Query 004913
Match_columns 724
No_of_seqs 164 out of 1015
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 14:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06879 PX_UP1_plant The phosp 100.0 1.1E-28 2.4E-33 233.2 12.6 114 48-161 1-138 (138)
2 cd06877 PX_SNX14 The phosphoin 99.9 1.4E-24 3E-29 199.8 13.7 113 48-160 3-118 (119)
3 cd06861 PX_Vps5p The phosphoin 99.9 1.7E-24 3.7E-29 196.1 12.8 111 49-161 2-112 (112)
4 cd07280 PX_YPT35 The phosphoin 99.9 4.2E-24 9.2E-29 195.5 12.5 109 49-159 4-119 (120)
5 cd06865 PX_SNX_like The phosph 99.9 8.1E-24 1.8E-28 194.3 12.7 99 63-161 19-120 (120)
6 cd07281 PX_SNX1 The phosphoino 99.9 2.1E-23 4.5E-28 192.3 12.2 111 49-161 2-124 (124)
7 cd06868 PX_HS1BP3 The phosphoi 99.9 3.9E-23 8.5E-28 190.8 12.5 110 49-161 3-120 (120)
8 cd06862 PX_SNX9_18_like The ph 99.9 3.7E-23 8E-28 192.3 12.3 107 48-161 1-107 (125)
9 cd07276 PX_SNX16 The phosphoin 99.9 3.6E-23 7.8E-28 186.8 11.6 106 48-161 4-110 (110)
10 cd07286 PX_SNX18 The phosphoin 99.9 3.8E-23 8.2E-28 193.3 12.1 106 49-161 2-107 (127)
11 cd06898 PX_SNX10 The phosphoin 99.9 6E-23 1.3E-27 187.2 13.0 109 49-160 3-112 (113)
12 cd06864 PX_SNX4 The phosphoino 99.9 6.2E-23 1.3E-27 191.2 12.7 113 49-161 2-129 (129)
13 cd07282 PX_SNX2 The phosphoino 99.9 5.2E-23 1.1E-27 190.6 12.1 109 50-160 3-123 (124)
14 cd06897 PX_SNARE The phosphoin 99.9 7.9E-23 1.7E-27 182.3 12.7 103 49-161 2-108 (108)
15 cd06863 PX_Atg24p The phosphoi 99.9 8.6E-23 1.9E-27 186.0 13.1 110 48-160 3-117 (118)
16 cd06886 PX_SNX27 The phosphoin 99.9 7.1E-23 1.5E-27 185.0 12.3 103 47-160 3-105 (106)
17 cd07279 PX_SNX20_21_like The p 99.9 7.7E-23 1.7E-27 185.0 12.2 110 49-161 2-112 (112)
18 cd06860 PX_SNX7_30_like The ph 99.9 9.5E-23 2E-27 186.3 12.8 109 50-160 3-115 (116)
19 cd06870 PX_CISK The phosphoino 99.9 7.2E-23 1.6E-27 184.6 11.6 105 49-161 4-109 (109)
20 cd06894 PX_SNX3_like The phosp 99.9 8.3E-23 1.8E-27 189.0 12.2 111 49-162 3-122 (123)
21 cd07295 PX_Grd19 The phosphoin 99.9 1.2E-22 2.6E-27 186.3 12.9 112 49-162 3-115 (116)
22 cd06867 PX_SNX41_42 The phosph 99.9 8.5E-23 1.8E-27 184.7 11.1 101 50-160 2-111 (112)
23 cd06859 PX_SNX1_2_like The pho 99.9 1E-22 2.2E-27 183.2 11.4 110 50-161 3-114 (114)
24 cd07301 PX_SNX21 The phosphoin 99.9 1.5E-22 3.3E-27 184.4 12.7 110 49-161 2-112 (112)
25 cd06873 PX_SNX13 The phosphoin 99.9 1.9E-22 4E-27 185.3 13.2 112 47-160 4-119 (120)
26 cd07300 PX_SNX20 The phosphoin 99.9 1.5E-22 3.2E-27 185.3 12.5 110 50-162 3-113 (114)
27 cd07293 PX_SNX3 The phosphoino 99.9 1.7E-22 3.7E-27 187.3 12.8 110 49-161 3-121 (123)
28 cd07283 PX_SNX30 The phosphoin 99.9 1.6E-22 3.5E-27 185.7 12.6 109 50-160 3-115 (116)
29 cd06881 PX_SNX15_like The phos 99.9 1.5E-22 3.1E-27 185.3 12.1 109 46-159 1-115 (117)
30 cd07294 PX_SNX12 The phosphoin 99.9 2.1E-22 4.6E-27 189.0 13.1 117 48-167 4-129 (132)
31 cd06876 PX_MDM1p The phosphoin 99.9 3.1E-22 6.7E-27 186.4 13.5 111 48-159 20-132 (133)
32 cd07284 PX_SNX7 The phosphoino 99.9 4.6E-22 1E-26 182.8 12.8 98 63-160 14-115 (116)
33 cd06893 PX_SNX19 The phosphoin 99.9 3E-22 6.4E-27 187.9 11.4 111 50-160 2-131 (132)
34 cd06878 PX_SNX25 The phosphoin 99.9 5.7E-22 1.2E-26 184.4 12.7 111 48-160 9-126 (127)
35 cd07285 PX_SNX9 The phosphoino 99.9 5.5E-22 1.2E-26 185.4 12.1 107 50-163 3-110 (126)
36 cd06872 PX_SNX19_like_plant Th 99.9 5.5E-22 1.2E-26 179.7 11.7 103 49-159 2-105 (107)
37 cd06875 PX_IRAS The phosphoino 99.9 6.8E-22 1.5E-26 181.2 12.4 104 48-163 4-107 (116)
38 cd06880 PX_SNX22 The phosphoin 99.9 9.3E-22 2E-26 178.5 12.4 105 48-164 1-105 (110)
39 cd06866 PX_SNX8_Mvp1p_like The 99.9 1.5E-21 3.3E-26 175.9 11.4 90 64-160 15-104 (105)
40 cd06885 PX_SNX17_31 The phosph 99.9 1.8E-21 4E-26 175.1 11.1 100 50-159 2-101 (104)
41 cd07288 PX_SNX15 The phosphoin 99.9 2.8E-21 6E-26 178.2 11.8 97 64-160 14-117 (118)
42 cd07287 PX_RPK118_like The pho 99.9 4.6E-21 9.9E-26 177.0 12.1 97 64-160 14-117 (118)
43 cd07277 PX_RUN The phosphoinos 99.8 6.3E-21 1.4E-25 176.0 11.6 107 49-163 2-108 (118)
44 cd06891 PX_Vps17p The phosphoi 99.8 9.3E-20 2E-24 173.2 12.8 119 38-161 20-140 (140)
45 cd06871 PX_MONaKA The phosphoi 99.8 8.1E-20 1.7E-24 168.4 11.5 104 49-163 9-112 (120)
46 cd06093 PX_domain The Phox Hom 99.8 3.9E-19 8.4E-24 152.5 12.8 105 50-160 2-106 (106)
47 cd06882 PX_p40phox The phospho 99.8 2.8E-19 6.1E-24 165.7 12.1 106 48-161 4-118 (123)
48 cd06869 PX_UP2_fungi The phosp 99.8 2.4E-19 5.1E-24 165.8 11.0 91 63-161 29-119 (119)
49 cd06883 PX_PI3K_C2 The phospho 99.8 3.7E-19 8.1E-24 161.4 11.8 105 50-160 2-108 (109)
50 smart00312 PX PhoX homologous 99.8 3.3E-19 7.2E-24 155.2 10.9 93 64-159 9-105 (105)
51 cd06874 PX_KIF16B_SNX23 The ph 99.8 1.2E-18 2.5E-23 162.9 11.8 99 49-154 2-101 (127)
52 KOG2527 Sorting nexin SNX11 [I 99.8 1.1E-18 2.4E-23 164.3 7.2 115 48-164 18-133 (144)
53 cd07291 PX_SNX5 The phosphoino 99.7 2.7E-18 5.8E-23 163.0 9.2 108 48-161 3-141 (141)
54 cd06892 PX_SNX5_like The phosp 99.7 4.8E-18 1E-22 161.7 9.8 108 48-161 3-141 (141)
55 PF00787 PX: PX domain; Inter 99.7 1.5E-17 3.4E-22 144.1 10.6 107 47-160 3-112 (113)
56 cd07292 PX_SNX6 The phosphoino 99.7 1.6E-17 3.4E-22 157.7 10.1 108 47-160 2-140 (141)
57 cd06884 PX_PI3K_C2_68D The pho 99.7 5.4E-17 1.2E-21 148.6 11.9 104 50-159 4-109 (111)
58 KOG2273 Membrane coat complex 99.7 4.2E-14 9.1E-19 155.8 35.6 116 46-162 108-228 (503)
59 KOG2528 Sorting nexin SNX9/SH3 99.7 9E-17 2E-21 174.0 9.3 126 11-161 167-292 (490)
60 cd06895 PX_PLD The phosphoinos 99.7 3.1E-16 6.8E-21 148.9 11.9 106 49-160 5-139 (140)
61 cd06890 PX_Bem1p The phosphoin 99.7 5.4E-16 1.2E-20 141.3 11.4 101 49-160 2-111 (112)
62 cd07289 PX_PI3K_C2_alpha The p 99.6 1.3E-15 2.8E-20 139.8 11.1 104 50-159 2-107 (109)
63 cd06887 PX_p47phox The phospho 99.6 1.6E-15 3.5E-20 140.6 10.7 92 64-161 15-116 (118)
64 cd06888 PX_FISH The phosphoino 99.6 6.8E-15 1.5E-19 136.5 10.7 92 65-160 16-118 (119)
65 cd07290 PX_PI3K_C2_beta The ph 99.6 8.9E-15 1.9E-19 134.3 10.8 92 65-159 14-107 (109)
66 cd07296 PX_PLD1 The phosphoino 99.5 1.8E-13 4E-18 129.8 10.9 91 64-160 22-134 (135)
67 KOG1259 Nischarin, modulator o 99.3 6.3E-12 1.4E-16 133.3 9.0 109 49-166 12-120 (490)
68 COG5391 Phox homology (PX) dom 99.3 1E-11 2.2E-16 139.2 8.9 103 49-152 134-244 (524)
69 cd06889 PX_NoxO1 The phosphoin 99.2 1.7E-10 3.7E-15 108.0 10.3 92 65-160 17-120 (121)
70 cd06896 PX_PI3K_C2_gamma The p 99.1 4.8E-10 1E-14 101.9 8.7 86 69-160 14-100 (101)
71 KOG3784 Sorting nexin protein 99.0 1.1E-09 2.3E-14 118.7 7.7 88 63-159 13-100 (407)
72 cd07297 PX_PLD2 The phosphoino 98.7 7.6E-08 1.6E-12 91.2 9.2 102 49-160 5-129 (130)
73 KOG2101 Intermediate filament- 98.3 1.2E-06 2.6E-11 93.6 8.0 93 63-155 131-232 (362)
74 KOG0905 Phosphoinositide 3-kin 97.8 7E-05 1.5E-09 90.1 9.5 114 42-161 1370-1485(1639)
75 PF07888 CALCOCO1: Calcium bin 97.7 0.006 1.3E-07 70.0 22.3 185 407-605 262-457 (546)
76 PF09755 DUF2046: Uncharacteri 97.6 0.0076 1.6E-07 65.0 20.5 202 401-615 78-304 (310)
77 TIGR02168 SMC_prok_B chromosom 97.6 0.009 1.9E-07 71.1 22.3 29 672-703 1019-1050(1179)
78 cd07298 PX_RICS The phosphoino 97.5 0.0004 8.7E-09 65.0 7.8 84 66-160 26-115 (115)
79 COG1196 Smc Chromosome segrega 97.3 0.06 1.3E-06 66.6 25.9 28 463-490 778-805 (1163)
80 TIGR02168 SMC_prok_B chromosom 97.3 0.043 9.4E-07 65.4 23.4 26 465-490 783-808 (1179)
81 TIGR02169 SMC_prok_A chromosom 97.2 0.045 9.6E-07 65.7 23.3 11 672-682 608-618 (1164)
82 PF07888 CALCOCO1: Calcium bin 97.0 0.062 1.3E-06 62.0 20.5 58 396-453 167-238 (546)
83 PRK02224 chromosome segregatio 96.9 0.48 1E-05 56.5 27.1 37 541-577 346-382 (880)
84 PRK02224 chromosome segregatio 96.8 0.29 6.3E-06 58.3 24.8 140 392-532 306-446 (880)
85 cd07278 PX_RICS_like The phosp 96.7 0.0092 2E-07 56.0 9.1 88 64-160 23-114 (114)
86 cd07299 PX_TCGAP The phosphoin 96.6 0.006 1.3E-07 57.1 7.1 87 65-160 23-113 (113)
87 KOG4773 NADPH oxidase [Energy 96.5 0.0032 6.9E-08 68.6 5.3 88 67-159 38-135 (386)
88 PF10174 Cast: RIM-binding pro 96.5 1 2.2E-05 54.4 26.2 177 401-577 253-455 (775)
89 KOG1660 Sorting nexin SNX6/TFA 96.4 0.0044 9.6E-08 67.6 5.5 93 68-161 40-163 (399)
90 PRK11637 AmiB activator; Provi 96.4 0.74 1.6E-05 51.1 22.9 16 510-525 171-186 (428)
91 TIGR00606 rad50 rad50. This fa 96.4 1 2.2E-05 56.8 26.2 60 467-531 795-862 (1311)
92 KOG0612 Rho-associated, coiled 96.2 1.3 2.8E-05 55.3 24.6 70 531-602 668-737 (1317)
93 PF12128 DUF3584: Protein of u 96.1 0.83 1.8E-05 57.2 23.6 78 413-490 341-428 (1201)
94 COG1196 Smc Chromosome segrega 96.1 0.63 1.4E-05 57.9 22.6 32 673-707 1004-1035(1163)
95 PRK11637 AmiB activator; Provi 96.0 1.2 2.6E-05 49.4 21.8 27 549-575 224-250 (428)
96 KOG4674 Uncharacterized conser 95.9 3.4 7.4E-05 53.8 27.3 295 397-696 834-1185(1822)
97 KOG0933 Structural maintenance 95.9 5.1 0.00011 49.6 27.3 208 391-617 672-897 (1174)
98 PF08317 Spc7: Spc7 kinetochor 95.8 0.11 2.5E-06 55.8 12.7 54 399-452 148-201 (325)
99 PF09730 BicD: Microtubule-ass 95.8 0.26 5.6E-06 58.7 16.4 157 425-593 23-181 (717)
100 PRK10361 DNA recombination pro 95.7 0.54 1.2E-05 53.8 18.0 133 409-561 55-189 (475)
101 KOG4674 Uncharacterized conser 95.7 1.2 2.5E-05 57.7 22.4 215 395-609 649-881 (1822)
102 PF04156 IncA: IncA protein; 95.6 0.2 4.3E-06 49.2 12.4 107 454-578 78-185 (191)
103 COG0419 SbcC ATPase involved i 95.4 2 4.3E-05 52.2 22.3 101 510-610 327-427 (908)
104 PRK04778 septation ring format 95.4 4.3 9.3E-05 47.1 23.9 233 397-644 195-463 (569)
105 TIGR00606 rad50 rad50. This fa 95.2 1.9 4.1E-05 54.5 22.1 20 673-692 1147-1166(1311)
106 PRK09039 hypothetical protein; 95.2 1.2 2.6E-05 48.8 17.8 180 428-620 39-223 (343)
107 KOG0161 Myosin class II heavy 95.2 2.5 5.4E-05 55.4 23.0 46 560-605 1099-1144(1930)
108 PRK04778 septation ring format 95.0 2.9 6.3E-05 48.5 21.1 150 409-576 284-436 (569)
109 KOG0994 Extracellular matrix g 94.9 2.9 6.2E-05 52.3 21.3 81 453-533 1545-1626(1758)
110 PF15619 Lebercilin: Ciliary p 94.9 2.8 6.1E-05 42.8 18.4 146 398-574 34-187 (194)
111 KOG0161 Myosin class II heavy 94.9 5.1 0.00011 52.8 24.6 130 396-535 981-1113(1930)
112 PRK04863 mukB cell division pr 94.8 4 8.7E-05 52.7 23.4 100 388-490 275-374 (1486)
113 KOG1029 Endocytic adaptor prot 94.6 1.1 2.3E-05 53.9 16.5 35 460-494 433-467 (1118)
114 PF00038 Filament: Intermediat 94.6 4.5 9.8E-05 42.6 19.8 38 403-440 71-108 (312)
115 PF00261 Tropomyosin: Tropomyo 94.5 3.7 8E-05 42.5 18.4 84 405-488 13-116 (237)
116 PHA02562 46 endonuclease subun 94.4 1.5 3.2E-05 49.5 16.5 45 516-560 355-402 (562)
117 PF00261 Tropomyosin: Tropomyo 94.4 3.1 6.8E-05 43.0 17.6 24 402-425 38-61 (237)
118 KOG0995 Centromere-associated 94.3 4 8.6E-05 47.8 19.8 171 416-605 219-393 (581)
119 COG1579 Zn-ribbon protein, pos 94.1 4.5 9.9E-05 42.8 18.2 153 438-602 34-187 (239)
120 KOG0996 Structural maintenance 94.0 5.1 0.00011 50.3 20.8 94 393-487 363-463 (1293)
121 KOG2129 Uncharacterized conser 94.0 8.3 0.00018 44.0 20.8 157 452-620 145-343 (552)
122 PRK03918 chromosome segregatio 93.9 7.8 0.00017 46.3 22.0 10 594-603 373-382 (880)
123 KOG0999 Microtubule-associated 93.8 15 0.00033 43.3 22.9 240 392-654 42-329 (772)
124 PF05701 WEMBL: Weak chloropla 93.8 8.4 0.00018 44.5 21.2 107 416-522 223-333 (522)
125 PF09726 Macoilin: Transmembra 93.5 23 0.00049 42.8 27.1 208 392-610 417-660 (697)
126 KOG0971 Microtubule-associated 93.4 9.3 0.0002 47.1 21.1 26 592-617 474-502 (1243)
127 PF08317 Spc7: Spc7 kinetochor 93.4 11 0.00024 40.9 20.2 192 398-605 73-270 (325)
128 KOG4673 Transcription factor T 93.4 5.1 0.00011 48.0 18.5 88 513-605 531-624 (961)
129 PF09726 Macoilin: Transmembra 93.2 11 0.00024 45.3 21.6 69 411-489 411-485 (697)
130 PF08580 KAR9: Yeast cortical 93.2 11 0.00023 45.4 21.4 158 402-561 66-266 (683)
131 KOG0977 Nuclear envelope prote 93.2 3.3 7.1E-05 48.4 16.7 202 401-604 128-367 (546)
132 PHA02562 46 endonuclease subun 93.1 19 0.00041 40.8 24.8 13 672-684 510-522 (562)
133 PF12128 DUF3584: Protein of u 93.1 33 0.00071 43.6 27.2 29 674-702 898-926 (1201)
134 PF04849 HAP1_N: HAP1 N-termin 93.0 2.1 4.5E-05 46.8 13.9 177 419-608 80-291 (306)
135 PF09755 DUF2046: Uncharacteri 92.9 13 0.00029 40.9 19.8 167 400-574 106-291 (310)
136 TIGR03007 pepcterm_ChnLen poly 92.8 2.5 5.3E-05 47.4 14.8 35 389-424 194-228 (498)
137 COG0419 SbcC ATPase involved i 92.7 31 0.00067 42.3 28.5 198 473-687 656-869 (908)
138 KOG4572 Predicted DNA-binding 92.7 2.6 5.6E-05 51.1 15.0 106 473-581 924-1039(1424)
139 KOG0964 Structural maintenance 92.4 9.6 0.00021 47.3 19.4 177 390-585 227-427 (1200)
140 PRK09039 hypothetical protein; 92.2 2.7 5.9E-05 46.0 13.8 46 510-566 142-187 (343)
141 PF00038 Filament: Intermediat 92.2 18 0.00038 38.2 20.8 34 542-575 214-247 (312)
142 smart00787 Spc7 Spc7 kinetocho 92.1 4.3 9.4E-05 44.2 15.1 22 555-576 243-264 (312)
143 PLN02939 transferase, transfer 92.0 1.3 2.8E-05 54.6 12.1 144 387-562 258-401 (977)
144 KOG0250 DNA repair protein RAD 92.0 11 0.00023 47.2 19.5 29 538-566 402-430 (1074)
145 KOG0977 Nuclear envelope prote 92.0 3.3 7.1E-05 48.4 14.7 154 403-565 31-190 (546)
146 KOG0976 Rho/Rac1-interacting s 91.9 17 0.00036 44.6 20.3 81 524-609 264-351 (1265)
147 KOG0933 Structural maintenance 91.8 15 0.00033 45.8 20.2 202 397-612 298-510 (1174)
148 COG1579 Zn-ribbon protein, pos 91.8 11 0.00023 40.2 16.9 121 433-568 57-180 (239)
149 PF09789 DUF2353: Uncharacteri 91.3 8 0.00017 42.6 15.9 161 390-578 62-223 (319)
150 PF10168 Nup88: Nuclear pore c 91.3 7.3 0.00016 46.9 17.0 126 395-538 538-665 (717)
151 TIGR03017 EpsF chain length de 91.2 27 0.00059 38.5 21.9 65 425-489 168-240 (444)
152 KOG1899 LAR transmembrane tyro 91.1 2.6 5.6E-05 49.9 12.6 58 404-461 108-168 (861)
153 KOG0980 Actin-binding protein 90.7 24 0.00052 43.6 20.2 165 398-571 349-542 (980)
154 smart00787 Spc7 Spc7 kinetocho 90.3 5.1 0.00011 43.7 13.4 192 399-606 69-266 (312)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.8 4.4 9.5E-05 38.5 11.1 127 435-604 3-130 (132)
156 COG4372 Uncharacterized protei 89.8 6.8 0.00015 44.3 13.9 75 502-580 126-205 (499)
157 TIGR03185 DNA_S_dndD DNA sulfu 89.7 16 0.00035 43.0 17.8 92 510-602 228-336 (650)
158 TIGR01005 eps_transp_fam exopo 89.6 14 0.0003 44.0 17.4 97 387-488 158-261 (754)
159 PF05667 DUF812: Protein of un 89.5 53 0.0011 39.1 22.9 209 394-605 329-569 (594)
160 PF13514 AAA_27: AAA domain 89.5 13 0.00028 46.4 17.7 175 395-574 745-926 (1111)
161 KOG0963 Transcription factor/C 89.5 47 0.001 39.7 20.9 89 469-557 194-312 (629)
162 PF13851 GAS: Growth-arrest sp 89.5 4.8 0.0001 41.2 11.8 94 466-573 29-129 (201)
163 TIGR01843 type_I_hlyD type I s 89.4 34 0.00075 36.8 21.2 69 542-610 208-277 (423)
164 PF04111 APG6: Autophagy prote 89.4 4.8 0.0001 43.7 12.4 139 467-617 12-150 (314)
165 PF00435 Spectrin: Spectrin re 89.0 9.9 0.00022 31.9 11.7 96 466-563 3-99 (105)
166 KOG0250 DNA repair protein RAD 88.6 33 0.00072 43.2 19.7 52 512-563 337-391 (1074)
167 PRK01156 chromosome segregatio 88.5 55 0.0012 39.8 21.5 25 538-562 364-388 (895)
168 KOG0612 Rho-associated, coiled 88.4 88 0.0019 40.2 23.1 22 405-427 453-474 (1317)
169 PF06160 EzrA: Septation ring 88.3 58 0.0013 38.1 25.8 175 412-645 283-460 (560)
170 PF15397 DUF4618: Domain of un 88.2 41 0.0009 36.3 19.2 207 413-652 5-223 (258)
171 KOG0996 Structural maintenance 88.1 70 0.0015 40.9 21.9 61 101-161 93-173 (1293)
172 PRK04863 mukB cell division pr 88.0 49 0.0011 43.3 21.5 32 393-424 293-324 (1486)
173 PF10174 Cast: RIM-binding pro 88.0 34 0.00073 41.9 19.2 42 565-610 566-607 (775)
174 TIGR03017 EpsF chain length de 87.9 48 0.001 36.7 20.6 209 397-625 168-388 (444)
175 PF10473 CENP-F_leu_zip: Leuci 87.9 10 0.00022 37.3 12.3 97 478-587 3-102 (140)
176 PF15233 SYCE1: Synaptonemal c 87.8 22 0.00047 35.0 14.2 65 476-556 67-131 (134)
177 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.8 11 0.00023 36.0 12.2 60 543-605 58-117 (132)
178 PF15070 GOLGA2L5: Putative go 87.8 26 0.00057 41.7 17.8 145 392-562 159-311 (617)
179 KOG0249 LAR-interacting protei 87.7 10 0.00022 45.7 14.2 181 384-581 54-257 (916)
180 KOG0971 Microtubule-associated 87.5 89 0.0019 39.2 24.4 105 412-533 223-346 (1243)
181 PF05557 MAD: Mitotic checkpoi 87.4 0.47 1E-05 56.1 3.6 140 452-606 283-426 (722)
182 COG4942 Membrane-bound metallo 87.3 61 0.0013 37.2 19.6 45 517-561 197-241 (420)
183 TIGR02680 conserved hypothetic 86.9 56 0.0012 42.2 21.2 114 463-576 843-960 (1353)
184 PF09728 Taxilin: Myosin-like 86.8 52 0.0011 35.9 20.9 202 394-610 37-275 (309)
185 TIGR01005 eps_transp_fam exopo 86.7 25 0.00054 41.9 17.1 64 469-532 199-264 (754)
186 KOG1029 Endocytic adaptor prot 86.6 82 0.0018 39.0 20.7 175 435-616 378-561 (1118)
187 COG1340 Uncharacterized archae 86.0 59 0.0013 35.8 24.1 78 469-561 105-182 (294)
188 TIGR03007 pepcterm_ChnLen poly 85.9 45 0.00098 37.6 17.8 20 428-447 161-180 (498)
189 KOG0979 Structural maintenance 85.7 49 0.0011 41.6 18.7 39 567-609 324-362 (1072)
190 PF05622 HOOK: HOOK protein; 85.7 0.24 5.2E-06 58.4 0.0 160 428-604 260-423 (713)
191 PRK10884 SH3 domain-containing 85.7 6.8 0.00015 40.5 10.3 69 510-578 98-166 (206)
192 PRK09841 cryptic autophosphory 85.1 32 0.0007 41.2 17.0 136 472-622 275-413 (726)
193 PF02403 Seryl_tRNA_N: Seryl-t 85.1 15 0.00032 33.4 11.2 91 472-564 3-94 (108)
194 PF15066 CAGE1: Cancer-associa 84.8 71 0.0015 37.3 18.4 194 321-578 256-459 (527)
195 KOG0963 Transcription factor/C 84.6 1E+02 0.0022 37.1 22.3 41 521-561 301-341 (629)
196 COG4942 Membrane-bound metallo 84.6 20 0.00044 40.9 14.1 32 513-544 88-119 (420)
197 PF10186 Atg14: UV radiation r 84.3 41 0.0009 34.6 15.4 29 616-644 175-203 (302)
198 KOG0976 Rho/Rac1-interacting s 84.1 52 0.0011 40.7 17.5 27 578-604 444-470 (1265)
199 PRK01156 chromosome segregatio 84.0 1.1E+02 0.0024 37.3 21.6 61 391-453 148-208 (895)
200 PF12718 Tropomyosin_1: Tropom 83.9 25 0.00054 34.3 12.8 50 405-454 12-61 (143)
201 PRK10929 putative mechanosensi 83.2 29 0.00063 44.0 16.0 100 510-609 56-160 (1109)
202 PF13870 DUF4201: Domain of un 83.0 28 0.00061 34.4 13.0 87 432-533 53-140 (177)
203 cd09238 V_Alix_like_1 Protein- 82.4 83 0.0018 34.5 19.6 83 396-478 75-169 (339)
204 PF05701 WEMBL: Weak chloropla 82.2 1.1E+02 0.0023 35.7 20.6 59 544-602 386-444 (522)
205 PF04156 IncA: IncA protein; 81.9 40 0.00087 33.2 13.6 11 591-601 180-190 (191)
206 PRK10698 phage shock protein P 81.8 61 0.0013 33.8 15.4 163 400-563 31-213 (222)
207 PF03148 Tektin: Tektin family 81.7 95 0.0021 34.8 18.7 129 430-572 224-352 (384)
208 TIGR01843 type_I_hlyD type I s 81.6 28 0.0006 37.5 13.4 31 542-572 201-231 (423)
209 PRK11519 tyrosine kinase; Prov 81.6 51 0.0011 39.5 16.7 135 473-622 276-413 (719)
210 PF10146 zf-C4H2: Zinc finger- 81.5 23 0.0005 37.3 12.3 51 553-603 48-98 (230)
211 KOG0978 E3 ubiquitin ligase in 81.3 1.4E+02 0.003 36.5 21.4 52 390-441 386-450 (698)
212 PRK10246 exonuclease subunit S 81.3 1.3E+02 0.0028 37.9 20.6 15 593-607 380-394 (1047)
213 smart00806 AIP3 Actin interact 81.3 14 0.00031 42.1 11.3 240 435-693 155-411 (426)
214 PF09787 Golgin_A5: Golgin sub 81.0 1.2E+02 0.0025 35.3 22.8 65 510-574 219-297 (511)
215 PF11559 ADIP: Afadin- and alp 80.7 17 0.00038 34.9 10.4 34 417-450 55-88 (151)
216 KOG0980 Actin-binding protein 80.6 68 0.0015 39.9 17.0 91 433-531 363-464 (980)
217 PF10473 CENP-F_leu_zip: Leuci 80.5 31 0.00067 34.1 12.0 90 427-531 16-106 (140)
218 PF05483 SCP-1: Synaptonemal c 80.4 1.5E+02 0.0033 36.3 20.3 56 435-490 450-518 (786)
219 PF05911 DUF869: Plant protein 80.3 1.1E+02 0.0024 37.7 18.8 183 409-604 504-712 (769)
220 TIGR02977 phageshock_pspA phag 80.1 73 0.0016 32.8 15.2 165 397-562 28-212 (219)
221 PF13851 GAS: Growth-arrest sp 80.0 39 0.00084 34.7 13.1 26 397-422 31-56 (201)
222 PF09787 Golgin_A5: Golgin sub 79.8 1.3E+02 0.0027 35.0 21.7 56 501-556 276-332 (511)
223 KOG0995 Centromere-associated 79.8 1.3E+02 0.0028 35.9 18.5 42 510-551 465-506 (581)
224 PF09789 DUF2353: Uncharacteri 79.6 72 0.0016 35.5 15.7 109 451-565 66-182 (319)
225 PLN02939 transferase, transfer 79.0 1.8E+02 0.0039 36.9 20.3 120 427-562 162-282 (977)
226 PF03915 AIP3: Actin interacti 78.9 8.9 0.00019 43.7 8.9 237 434-693 150-409 (424)
227 PF10146 zf-C4H2: Zinc finger- 78.9 44 0.00095 35.3 13.3 90 473-569 3-92 (230)
228 PRK11281 hypothetical protein; 78.8 1.3E+02 0.0028 38.6 19.4 97 393-490 73-182 (1113)
229 PRK10929 putative mechanosensi 78.7 1E+02 0.0022 39.4 18.5 93 393-490 58-163 (1109)
230 PF10186 Atg14: UV radiation r 78.4 33 0.00071 35.4 12.2 14 586-599 144-157 (302)
231 PF15619 Lebercilin: Ciliary p 78.1 88 0.0019 32.2 17.5 70 534-604 115-189 (194)
232 PF05667 DUF812: Protein of un 78.1 54 0.0012 39.1 15.2 65 98-173 38-106 (594)
233 KOG0579 Ste20-like serine/thre 78.0 1E+02 0.0022 37.9 17.0 85 513-601 879-969 (1187)
234 TIGR03319 YmdA_YtgF conserved 77.7 1.5E+02 0.0033 34.7 18.6 15 597-611 187-201 (514)
235 TIGR03185 DNA_S_dndD DNA sulfu 77.4 1.6E+02 0.0035 34.9 22.6 22 666-687 580-602 (650)
236 COG4477 EzrA Negative regulato 77.2 1.7E+02 0.0036 34.9 18.8 190 403-648 277-466 (570)
237 PF15070 GOLGA2L5: Putative go 76.4 1.8E+02 0.0039 35.0 26.8 37 502-538 156-193 (617)
238 KOG0979 Structural maintenance 75.9 73 0.0016 40.1 15.7 191 393-610 678-880 (1072)
239 PF14197 Cep57_CLD_2: Centroso 75.7 6.7 0.00015 34.2 5.4 63 455-524 3-66 (69)
240 TIGR02680 conserved hypothetic 75.6 1.8E+02 0.004 37.8 19.9 23 393-415 763-785 (1353)
241 PF05262 Borrelia_P83: Borreli 75.6 1.4E+02 0.003 35.0 17.2 43 382-425 150-209 (489)
242 PF04849 HAP1_N: HAP1 N-termin 75.2 1.4E+02 0.003 33.1 17.9 142 502-693 163-305 (306)
243 PF14662 CCDC155: Coiled-coil 74.5 52 0.0011 34.3 12.1 75 490-572 20-95 (193)
244 PF11559 ADIP: Afadin- and alp 74.2 86 0.0019 30.2 13.2 147 420-604 4-151 (151)
245 PF13801 Metal_resist: Heavy-m 74.0 7.7 0.00017 34.0 5.5 85 387-471 39-123 (125)
246 PF07111 HCR: Alpha helical co 74.0 1.5E+02 0.0032 36.3 17.1 157 355-523 48-215 (739)
247 KOG2751 Beclin-like protein [S 73.9 33 0.00071 39.5 11.4 71 510-586 155-225 (447)
248 KOG4643 Uncharacterized coiled 73.5 2.7E+02 0.0059 35.6 24.5 161 528-700 434-623 (1195)
249 PF09738 DUF2051: Double stran 73.3 38 0.00082 37.2 11.5 93 473-576 79-172 (302)
250 KOG4673 Transcription factor T 73.3 2.4E+02 0.0051 34.8 19.7 76 446-525 591-682 (961)
251 PLN02866 phospholipase D 72.6 9 0.0002 47.9 7.3 91 67-163 32-173 (1068)
252 PF14915 CCDC144C: CCDC144C pr 72.5 1.6E+02 0.0035 32.6 18.3 181 412-605 89-297 (305)
253 PF05557 MAD: Mitotic checkpoi 72.4 50 0.0011 39.6 13.2 101 386-489 406-535 (722)
254 PF10168 Nup88: Nuclear pore c 71.8 27 0.00059 42.3 10.9 96 503-605 604-711 (717)
255 KOG2911 Uncharacterized conser 71.8 55 0.0012 37.7 12.5 106 576-689 280-388 (439)
256 COG5185 HEC1 Protein involved 71.7 1.7E+02 0.0038 34.5 16.4 99 502-602 326-426 (622)
257 PRK10884 SH3 domain-containing 71.5 48 0.001 34.4 11.2 59 510-568 91-149 (206)
258 PF07106 TBPIP: Tat binding pr 71.4 11 0.00025 36.8 6.5 37 539-575 95-133 (169)
259 PF04111 APG6: Autophagy prote 71.1 27 0.00058 38.2 9.8 22 542-563 62-83 (314)
260 KOG0946 ER-Golgi vesicle-tethe 71.0 2.2E+02 0.0047 35.6 17.7 96 393-490 657-773 (970)
261 PF03962 Mnd1: Mnd1 family; I 70.9 31 0.00067 35.1 9.6 25 537-561 103-127 (188)
262 cd00176 SPEC Spectrin repeats, 70.7 95 0.0021 29.2 14.9 91 468-560 4-95 (213)
263 PRK09841 cryptic autophosphory 70.7 2.2E+02 0.0048 34.4 18.0 58 386-448 230-287 (726)
264 PRK12704 phosphodiesterase; Pr 70.1 2.3E+02 0.0049 33.3 19.1 18 554-571 153-170 (520)
265 PF01576 Myosin_tail_1: Myosin 69.9 1.5 3.2E-05 53.5 0.0 206 394-610 399-626 (859)
266 PLN02320 seryl-tRNA synthetase 69.9 31 0.00068 40.2 10.5 85 472-560 68-153 (502)
267 smart00806 AIP3 Actin interact 69.7 63 0.0014 37.2 12.5 105 431-538 220-329 (426)
268 PF05010 TACC: Transforming ac 69.6 1.5E+02 0.0033 31.1 16.3 38 494-531 64-102 (207)
269 PF03962 Mnd1: Mnd1 family; I 69.2 53 0.0011 33.5 10.8 33 437-469 14-53 (188)
270 PF07111 HCR: Alpha helical co 69.1 2.1E+02 0.0045 35.1 16.9 96 469-576 113-208 (739)
271 PRK05431 seryl-tRNA synthetase 69.0 35 0.00077 38.6 10.5 19 472-490 3-21 (425)
272 PLN03188 kinesin-12 family pro 68.7 3.7E+02 0.008 35.2 20.2 13 415-427 916-928 (1320)
273 KOG0239 Kinesin (KAR3 subfamil 68.6 1.1E+02 0.0023 37.2 14.7 16 640-655 376-391 (670)
274 TIGR01000 bacteriocin_acc bact 68.4 2.1E+02 0.0046 32.3 17.9 25 545-569 237-261 (457)
275 PF07798 DUF1640: Protein of u 68.1 1.3E+02 0.0029 29.9 16.6 28 462-489 71-98 (177)
276 TIGR03545 conserved hypothetic 68.0 32 0.00069 40.5 10.2 16 518-533 190-205 (555)
277 cd07686 F-BAR_Fer The F-BAR (F 67.5 81 0.0018 33.5 12.1 121 508-653 68-196 (234)
278 PF01576 Myosin_tail_1: Myosin 67.1 1.8 3.9E-05 52.7 0.0 125 522-652 471-625 (859)
279 KOG0239 Kinesin (KAR3 subfamil 67.0 88 0.0019 37.9 13.6 38 388-425 170-207 (670)
280 KOG4677 Golgi integral membran 67.0 2.6E+02 0.0057 32.9 18.8 119 428-552 190-317 (554)
281 PF09730 BicD: Microtubule-ass 66.7 3.2E+02 0.0069 33.7 23.3 97 510-606 364-467 (717)
282 TIGR01010 BexC_CtrB_KpsE polys 66.3 2E+02 0.0044 31.3 16.8 35 417-451 157-193 (362)
283 KOG0243 Kinesin-like protein [ 66.2 3.8E+02 0.0082 34.4 21.5 172 396-567 444-655 (1041)
284 COG1842 PspA Phage shock prote 66.0 1E+02 0.0022 32.5 12.4 31 434-464 30-60 (225)
285 PF14988 DUF4515: Domain of un 65.9 1.7E+02 0.0037 30.4 16.4 36 539-574 151-186 (206)
286 PRK11519 tyrosine kinase; Prov 65.7 2.4E+02 0.0053 34.0 17.0 59 386-450 230-289 (719)
287 PF04012 PspA_IM30: PspA/IM30 65.2 1E+02 0.0022 31.3 12.0 65 398-462 28-92 (221)
288 KOG1937 Uncharacterized conser 64.6 2.9E+02 0.0063 32.5 19.2 147 415-573 266-418 (521)
289 KOG0163 Myosin class VI heavy 64.6 95 0.0021 38.4 13.0 35 415-452 851-885 (1259)
290 KOG4403 Cell surface glycoprot 64.3 89 0.0019 36.3 12.2 125 395-531 241-380 (575)
291 KOG0962 DNA repair protein RAD 64.2 4.5E+02 0.0097 34.6 22.3 148 435-583 705-865 (1294)
292 PF05278 PEARLI-4: Arabidopsis 63.8 2.3E+02 0.005 31.0 17.0 132 427-578 121-255 (269)
293 KOG4807 F-actin binding protei 63.5 2E+02 0.0043 33.3 14.6 105 545-652 422-535 (593)
294 PRK11546 zraP zinc resistance 62.5 40 0.00086 33.5 8.2 53 512-564 61-116 (143)
295 COG2433 Uncharacterized conser 62.4 90 0.002 37.5 12.2 78 502-580 432-510 (652)
296 PRK00409 recombination and DNA 62.3 1.1E+02 0.0024 37.4 13.6 28 400-427 502-529 (782)
297 PF15066 CAGE1: Cancer-associa 62.3 3E+02 0.0064 32.5 15.9 32 514-545 455-486 (527)
298 PRK12705 hypothetical protein; 61.8 3.3E+02 0.0071 32.2 16.9 28 671-698 253-280 (508)
299 PF06785 UPF0242: Uncharacteri 61.4 2E+02 0.0043 32.6 13.9 117 427-565 67-190 (401)
300 PF07445 priB_priC: Primosomal 61.4 34 0.00074 34.4 7.7 90 394-490 78-171 (173)
301 PF03357 Snf7: Snf7; InterPro 60.7 64 0.0014 30.7 9.2 142 540-688 11-158 (171)
302 PF06160 EzrA: Septation ring 60.6 3.4E+02 0.0074 32.0 21.1 154 397-561 98-269 (560)
303 KOG4593 Mitotic checkpoint pro 60.3 4.1E+02 0.0088 32.8 21.0 31 675-705 388-418 (716)
304 cd09235 V_Alix Middle V-domain 60.1 2.7E+02 0.0058 30.6 20.8 66 396-461 72-146 (339)
305 TIGR00414 serS seryl-tRNA synt 60.0 70 0.0015 36.2 10.7 19 472-490 3-21 (418)
306 KOG0964 Structural maintenance 59.6 4.9E+02 0.011 33.5 20.7 130 428-573 672-814 (1200)
307 TIGR03545 conserved hypothetic 59.4 38 0.00082 39.9 8.7 101 477-578 190-312 (555)
308 PRK06800 fliH flagellar assemb 59.0 46 0.001 34.7 8.2 61 524-588 36-96 (228)
309 PF05010 TACC: Transforming ac 58.2 2.4E+02 0.0053 29.5 17.9 59 516-574 140-198 (207)
310 PF14282 FlxA: FlxA-like prote 58.0 61 0.0013 30.1 8.2 60 511-570 18-77 (106)
311 KOG4360 Uncharacterized coiled 57.6 2.5E+02 0.0054 33.5 14.4 90 510-610 203-292 (596)
312 PF14988 DUF4515: Domain of un 57.1 2.5E+02 0.0053 29.3 18.6 56 428-484 4-60 (206)
313 PF12718 Tropomyosin_1: Tropom 57.1 2E+02 0.0043 28.2 12.9 100 468-575 4-104 (143)
314 KOG4643 Uncharacterized coiled 57.0 5.4E+02 0.012 33.2 28.2 127 395-528 172-331 (1195)
315 PF14915 CCDC144C: CCDC144C pr 56.6 1.3E+02 0.0028 33.4 11.4 87 431-521 147-244 (305)
316 PF06008 Laminin_I: Laminin Do 56.4 2.6E+02 0.0057 29.4 21.9 177 402-606 47-236 (264)
317 PRK00409 recombination and DNA 56.2 1.3E+02 0.0029 36.8 12.8 12 679-690 719-730 (782)
318 cd00176 SPEC Spectrin repeats, 56.2 1.8E+02 0.0039 27.4 17.0 104 429-539 73-180 (213)
319 TIGR01069 mutS2 MutS2 family p 55.6 1.4E+02 0.0029 36.7 12.7 29 400-428 497-525 (771)
320 KOG0018 Structural maintenance 55.5 2.6E+02 0.0055 35.9 14.9 26 510-535 386-411 (1141)
321 KOG0962 DNA repair protein RAD 55.5 5E+02 0.011 34.1 17.6 162 407-573 757-928 (1294)
322 KOG1003 Actin filament-coating 55.4 2.8E+02 0.006 29.3 15.6 101 503-603 78-182 (205)
323 PF13166 AAA_13: AAA domain 55.3 4.2E+02 0.0091 31.4 22.3 150 535-693 408-563 (712)
324 PF14775 NYD-SP28_assoc: Sperm 55.1 13 0.00028 31.7 3.0 41 520-564 20-60 (60)
325 PF10498 IFT57: Intra-flagella 54.9 2.5E+02 0.0055 31.6 13.7 154 391-563 193-347 (359)
326 PF13514 AAA_27: AAA domain 54.8 5.6E+02 0.012 32.6 21.7 7 111-117 233-239 (1111)
327 PLN02678 seryl-tRNA synthetase 54.2 60 0.0013 37.4 9.0 20 510-529 45-64 (448)
328 PF05266 DUF724: Protein of un 53.9 62 0.0013 33.2 8.2 52 395-447 68-122 (190)
329 PF10211 Ax_dynein_light: Axon 53.4 2.6E+02 0.0057 28.5 18.0 151 384-562 18-188 (189)
330 KOG1853 LIS1-interacting prote 53.3 3.5E+02 0.0075 29.8 13.9 24 538-561 158-181 (333)
331 KOG0018 Structural maintenance 52.7 6.4E+02 0.014 32.7 18.9 23 393-415 262-284 (1141)
332 PF10205 KLRAQ: Predicted coil 52.6 88 0.0019 29.7 8.2 66 453-539 15-81 (102)
333 PF15188 CCDC-167: Coiled-coil 52.3 55 0.0012 30.0 6.7 54 512-565 5-64 (85)
334 TIGR01010 BexC_CtrB_KpsE polys 52.2 3.5E+02 0.0076 29.5 15.7 93 463-560 169-265 (362)
335 KOG3565 Cdc42-interacting prot 52.2 4.4E+02 0.0095 32.1 15.9 104 435-551 10-132 (640)
336 PF15233 SYCE1: Synaptonemal c 52.0 1.6E+02 0.0035 29.2 10.2 52 521-576 8-59 (134)
337 PF08614 ATG16: Autophagy prot 51.9 1.1E+02 0.0024 30.9 9.6 22 403-424 77-98 (194)
338 PF13949 ALIX_LYPXL_bnd: ALIX 51.6 3.1E+02 0.0067 28.7 22.5 70 395-464 24-102 (296)
339 PRK10246 exonuclease subunit S 51.3 6.2E+02 0.013 32.2 23.7 15 675-689 893-907 (1047)
340 PF07200 Mod_r: Modifier of ru 51.2 2.3E+02 0.005 27.1 13.1 41 416-456 6-48 (150)
341 KOG0946 ER-Golgi vesicle-tethe 50.9 5.8E+02 0.013 32.2 16.4 50 398-453 620-678 (970)
342 PF14992 TMCO5: TMCO5 family 50.3 1.6E+02 0.0036 32.3 11.0 95 476-571 23-129 (280)
343 PF03999 MAP65_ASE1: Microtubu 50.3 58 0.0013 38.5 8.4 168 394-568 215-408 (619)
344 PF09304 Cortex-I_coil: Cortex 50.2 1.9E+02 0.0041 27.8 10.0 38 538-575 52-89 (107)
345 TIGR01069 mutS2 MutS2 family p 49.9 1.6E+02 0.0034 36.2 12.0 71 510-580 516-591 (771)
346 cd08915 V_Alix_like Protein-in 49.4 3.8E+02 0.0082 29.2 19.7 70 396-465 73-152 (342)
347 PF06008 Laminin_I: Laminin Do 49.4 3.4E+02 0.0073 28.6 22.9 170 396-584 55-225 (264)
348 PF06548 Kinesin-related: Kine 49.3 4.3E+02 0.0092 31.2 14.4 34 567-600 436-469 (488)
349 PF05622 HOOK: HOOK protein; 48.8 5.8 0.00013 47.2 0.0 73 409-482 209-285 (713)
350 PF01442 Apolipoprotein: Apoli 48.6 2.4E+02 0.0052 26.6 17.4 50 417-466 26-76 (202)
351 PF11932 DUF3450: Protein of u 48.5 3.4E+02 0.0074 28.4 12.9 35 536-570 55-89 (251)
352 KOG0243 Kinesin-like protein [ 48.2 3.8E+02 0.0083 34.4 14.9 127 412-538 370-516 (1041)
353 PF03915 AIP3: Actin interacti 48.0 75 0.0016 36.5 8.5 100 431-533 216-320 (424)
354 KOG3003 Molecular chaperone of 47.8 84 0.0018 33.7 8.2 106 563-701 69-174 (236)
355 PF00769 ERM: Ezrin/radixin/mo 47.8 3.7E+02 0.008 28.5 13.7 113 474-604 1-114 (246)
356 KOG2891 Surface glycoprotein [ 47.3 4.5E+02 0.0097 29.4 14.5 10 65-74 28-37 (445)
357 PRK15422 septal ring assembly 47.2 1.2E+02 0.0026 27.7 7.9 68 451-529 9-77 (79)
358 PF13166 AAA_13: AAA domain 46.9 5.6E+02 0.012 30.4 18.4 48 556-603 408-455 (712)
359 PRK07720 fliJ flagellar biosyn 46.6 2.7E+02 0.0058 26.6 12.9 62 538-599 79-141 (146)
360 PF11598 COMP: Cartilage oligo 46.4 63 0.0014 26.5 5.5 17 591-607 27-43 (45)
361 PF02601 Exonuc_VII_L: Exonucl 46.3 4E+02 0.0087 28.5 14.9 42 427-468 135-176 (319)
362 KOG4593 Mitotic checkpoint pro 46.2 6.6E+02 0.014 31.0 19.6 15 568-582 274-288 (716)
363 PRK00591 prfA peptide chain re 46.1 1.7E+02 0.0038 33.0 10.8 86 517-603 4-99 (359)
364 PF05529 Bap31: B-cell recepto 46.1 92 0.002 31.1 8.0 20 510-529 173-192 (192)
365 PF07889 DUF1664: Protein of u 46.0 2.8E+02 0.006 27.2 10.8 72 416-491 52-123 (126)
366 PF03904 DUF334: Domain of unk 46.0 4.1E+02 0.009 28.6 13.7 41 511-555 42-82 (230)
367 PF15186 TEX13: Testis-express 45.8 3.4E+02 0.0074 27.6 11.8 61 521-603 87-148 (152)
368 KOG3478 Prefoldin subunit 6, K 45.8 2.4E+02 0.0052 27.5 10.1 38 525-562 64-101 (120)
369 PF08826 DMPK_coil: DMPK coile 45.6 91 0.002 27.0 6.7 49 505-557 10-59 (61)
370 PF15450 DUF4631: Domain of un 45.5 6.1E+02 0.013 30.4 15.4 157 395-555 285-466 (531)
371 COG1340 Uncharacterized archae 45.4 4.7E+02 0.01 29.1 17.6 165 417-609 30-195 (294)
372 TIGR00634 recN DNA repair prot 44.8 5.8E+02 0.013 29.9 15.8 71 407-487 168-238 (563)
373 PF14817 HAUS5: HAUS augmin-li 44.6 6.7E+02 0.014 30.6 17.2 43 396-439 249-291 (632)
374 PF07798 DUF1640: Protein of u 44.5 3.4E+02 0.0073 27.2 12.8 17 594-610 121-137 (177)
375 KOG0982 Centrosomal protein Nu 44.1 6E+02 0.013 29.9 26.3 271 385-703 207-493 (502)
376 smart00502 BBC B-Box C-termina 44.0 2.3E+02 0.005 25.1 13.3 98 510-610 12-111 (127)
377 PF05384 DegS: Sensor protein 43.9 2.8E+02 0.006 28.1 10.8 64 486-549 7-71 (159)
378 PF07106 TBPIP: Tat binding pr 43.7 50 0.0011 32.4 5.6 16 474-489 89-104 (169)
379 PF10267 Tmemb_cc2: Predicted 43.6 5.6E+02 0.012 29.5 16.5 92 397-532 216-318 (395)
380 PF06705 SF-assemblin: SF-asse 43.5 4.1E+02 0.0088 27.8 19.2 41 406-446 11-52 (247)
381 COG5283 Phage-related tail pro 43.4 3.5E+02 0.0077 35.1 13.7 137 466-608 73-220 (1213)
382 PF12325 TMF_TATA_bd: TATA ele 42.8 3.2E+02 0.007 26.4 10.8 27 427-453 15-41 (120)
383 PTZ00266 NIMA-related protein 42.4 2.6E+02 0.0056 35.7 12.5 18 567-584 506-523 (1021)
384 KOG0994 Extracellular matrix g 42.4 9.6E+02 0.021 31.8 21.8 63 510-572 1652-1717(1758)
385 TIGR01000 bacteriocin_acc bact 42.3 5.6E+02 0.012 29.1 15.1 23 502-524 239-262 (457)
386 PF15035 Rootletin: Ciliary ro 42.3 2.4E+02 0.0053 28.8 10.3 63 499-561 88-165 (182)
387 PF06818 Fez1: Fez1; InterPro 42.2 4.4E+02 0.0095 27.8 13.2 132 473-604 47-202 (202)
388 COG3206 GumC Uncharacterized p 42.2 5.6E+02 0.012 29.0 18.4 19 546-564 287-305 (458)
389 PF02403 Seryl_tRNA_N: Seryl-t 41.8 1.8E+02 0.004 26.3 8.6 59 510-572 27-88 (108)
390 PF11802 CENP-K: Centromere-as 41.7 64 0.0014 35.1 6.3 58 583-654 13-70 (268)
391 PF11932 DUF3450: Protein of u 41.5 4.4E+02 0.0095 27.6 12.6 62 502-574 45-107 (251)
392 PF05266 DUF724: Protein of un 41.4 2.5E+02 0.0054 29.0 10.3 90 395-489 92-184 (190)
393 smart00150 SPEC Spectrin repea 41.2 2.1E+02 0.0045 23.8 9.9 66 473-540 7-73 (101)
394 PF09032 Siah-Interact_N: Siah 41.2 44 0.00095 30.2 4.3 45 405-449 1-47 (79)
395 PRK00106 hypothetical protein; 41.1 7E+02 0.015 29.8 19.3 16 597-612 208-223 (535)
396 TIGR00634 recN DNA repair prot 40.8 6.6E+02 0.014 29.5 18.6 40 539-578 331-373 (563)
397 TIGR03752 conj_TIGR03752 integ 40.5 1.3E+02 0.0029 35.1 9.0 60 538-604 81-141 (472)
398 cd07657 F-BAR_Fes_Fer The F-BA 40.4 4.3E+02 0.0094 27.9 12.1 97 510-609 70-177 (237)
399 PF03310 Cauli_DNA-bind: Cauli 40.3 80 0.0017 30.8 6.2 57 542-608 4-60 (121)
400 COG3074 Uncharacterized protei 40.2 1.4E+02 0.003 26.9 7.1 30 449-482 7-36 (79)
401 PRK11546 zraP zinc resistance 40.1 1.3E+02 0.0029 29.9 7.8 42 468-509 58-99 (143)
402 KOG0288 WD40 repeat protein Ti 40.1 3.8E+02 0.0082 31.3 12.2 9 637-645 124-132 (459)
403 PRK09343 prefoldin subunit bet 40.1 3.3E+02 0.0072 25.9 10.2 50 510-566 65-114 (121)
404 PF03961 DUF342: Protein of un 40.0 1.8E+02 0.0039 33.0 9.9 24 510-533 332-355 (451)
405 PF05529 Bap31: B-cell recepto 39.8 1.4E+02 0.0029 30.0 8.0 7 392-398 28-34 (192)
406 PF02050 FliJ: Flagellar FliJ 39.7 2.6E+02 0.0055 24.4 13.2 41 544-584 66-106 (123)
407 PF06034 DUF919: Nucleopolyhed 39.6 53 0.0011 28.6 4.4 53 553-610 3-55 (62)
408 TIGR00570 cdk7 CDK-activating 39.5 3.2E+02 0.0068 30.5 11.3 62 393-455 73-140 (309)
409 PF13949 ALIX_LYPXL_bnd: ALIX 39.3 4.7E+02 0.01 27.4 19.0 87 474-575 80-181 (296)
410 PF04977 DivIC: Septum formati 39.3 1E+02 0.0022 25.9 6.1 22 542-563 29-50 (80)
411 PF01544 CorA: CorA-like Mg2+ 38.7 3.8E+02 0.0083 27.3 11.3 96 382-488 75-175 (292)
412 KOG4637 Adaptor for phosphoino 38.6 6E+02 0.013 29.5 13.3 59 476-545 148-207 (464)
413 KOG4657 Uncharacterized conser 38.3 2.2E+02 0.0047 30.7 9.4 52 511-563 68-119 (246)
414 PF07851 TMPIT: TMPIT-like pro 38.2 1.7E+02 0.0038 32.7 9.2 47 510-556 2-48 (330)
415 PRK00578 prfB peptide chain re 37.8 1.7E+02 0.0036 33.2 9.1 56 521-577 25-88 (367)
416 PF10481 CENP-F_N: Cenp-F N-te 37.7 3.1E+02 0.0068 30.4 10.7 19 682-700 282-300 (307)
417 KOG0577 Serine/threonine prote 37.4 9.1E+02 0.02 30.1 18.7 47 516-562 609-656 (948)
418 PF07197 DUF1409: Protein of u 37.3 16 0.00035 30.6 0.9 29 587-615 6-34 (51)
419 KOG0681 Actin-related protein 37.3 6.5E+02 0.014 30.5 13.8 36 582-617 461-496 (645)
420 KOG0993 Rab5 GTPase effector R 37.2 2.4E+02 0.0052 32.9 10.1 74 523-606 381-454 (542)
421 KOG0163 Myosin class VI heavy 37.0 4.8E+02 0.01 32.8 12.9 16 92-107 429-445 (1259)
422 PRK10476 multidrug resistance 37.0 4.8E+02 0.01 28.2 12.2 17 594-610 198-214 (346)
423 KOG0249 LAR-interacting protei 36.9 8.7E+02 0.019 30.5 14.9 72 480-551 183-258 (916)
424 COG4026 Uncharacterized protei 36.8 3.2E+02 0.0069 29.6 10.3 18 588-605 186-203 (290)
425 PF04380 BMFP: Membrane fusoge 36.5 56 0.0012 29.0 4.2 30 505-534 49-79 (79)
426 PF10234 Cluap1: Clusterin-ass 36.3 4.7E+02 0.01 28.6 11.8 115 419-558 136-257 (267)
427 PF02601 Exonuc_VII_L: Exonucl 35.7 3.6E+02 0.0079 28.8 11.0 68 399-468 157-224 (319)
428 PF02841 GBP_C: Guanylate-bind 35.6 4.3E+02 0.0092 28.4 11.4 92 512-604 204-295 (297)
429 PF02646 RmuC: RmuC family; I 35.4 1E+02 0.0022 33.4 6.8 121 510-636 4-139 (304)
430 cd00179 SynN Syntaxin N-termin 35.2 3E+02 0.0064 25.9 9.2 110 473-589 1-122 (151)
431 KOG1854 Mitochondrial inner me 35.2 9.3E+02 0.02 29.6 16.9 156 436-604 252-459 (657)
432 PRK10698 phage shock protein P 34.9 5.5E+02 0.012 26.8 17.6 26 624-649 161-186 (222)
433 COG1842 PspA Phage shock prote 34.7 5.8E+02 0.013 27.0 13.7 81 405-486 57-142 (225)
434 PF01920 Prefoldin_2: Prefoldi 34.5 1.5E+02 0.0032 26.2 6.7 18 542-559 81-98 (106)
435 PF06717 DUF1202: Protein of u 34.5 5.6E+02 0.012 28.6 11.9 114 448-570 186-302 (308)
436 KOG2002 TPR-containing nuclear 34.1 4.6E+02 0.01 33.5 12.5 97 503-604 773-883 (1018)
437 PF11802 CENP-K: Centromere-as 34.1 6.7E+02 0.015 27.6 16.1 115 431-565 55-178 (268)
438 cd00632 Prefoldin_beta Prefold 34.0 2.9E+02 0.0062 25.3 8.5 25 465-489 7-31 (105)
439 PF10046 BLOC1_2: Biogenesis o 33.9 3.8E+02 0.0081 24.6 11.1 90 398-489 5-98 (99)
440 PF12761 End3: Actin cytoskele 33.7 1.8E+02 0.004 30.4 7.9 87 470-560 95-183 (195)
441 PF02994 Transposase_22: L1 tr 33.6 1.3E+02 0.0028 33.7 7.4 21 590-610 176-196 (370)
442 KOG0288 WD40 repeat protein Ti 33.3 2.8E+02 0.0061 32.3 9.9 96 535-632 74-172 (459)
443 TIGR00019 prfA peptide chain r 33.0 3.6E+02 0.0079 30.6 10.7 86 517-603 5-99 (360)
444 COG1730 GIM5 Predicted prefold 33.0 4.9E+02 0.011 26.0 10.5 103 468-581 3-138 (145)
445 COG4026 Uncharacterized protei 32.6 3.1E+02 0.0066 29.8 9.4 55 505-559 148-206 (290)
446 cd09236 V_AnPalA_UmRIM20_like 32.6 7.2E+02 0.016 27.5 22.0 191 396-591 74-291 (353)
447 PF13863 DUF4200: Domain of un 32.5 4E+02 0.0087 24.5 12.8 82 525-606 20-108 (126)
448 KOG1103 Predicted coiled-coil 32.2 8.4E+02 0.018 28.2 19.2 75 391-478 87-164 (561)
449 PRK10476 multidrug resistance 32.2 5.4E+02 0.012 27.8 11.7 18 433-450 84-101 (346)
450 KOG0978 E3 ubiquitin ligase in 32.2 1.1E+03 0.023 29.4 20.3 30 458-490 486-515 (698)
451 PRK03598 putative efflux pump 32.1 6.6E+02 0.014 26.9 12.6 19 592-610 191-209 (331)
452 COG3883 Uncharacterized protei 32.1 7.2E+02 0.016 27.3 19.1 57 515-575 144-200 (265)
453 TIGR00020 prfB peptide chain r 32.1 2.4E+02 0.0052 32.0 9.2 81 520-606 24-112 (364)
454 KOG0244 Kinesin-like protein [ 31.9 9.8E+02 0.021 30.5 14.7 132 402-533 511-657 (913)
455 COG3264 Small-conductance mech 31.9 2.9E+02 0.0062 34.6 10.3 86 552-643 137-222 (835)
456 smart00503 SynN Syntaxin N-ter 31.8 3.7E+02 0.0081 24.0 11.8 11 591-601 101-111 (117)
457 cd07685 F-BAR_Fes The F-BAR (F 31.8 4.3E+02 0.0092 28.6 10.4 125 510-654 74-200 (237)
458 PF08703 PLC-beta_C: PLC-beta 31.5 6.2E+02 0.013 26.4 13.7 30 526-555 79-108 (185)
459 KOG0517 Beta-spectrin [Cytoske 31.0 5.6E+02 0.012 35.2 12.9 112 406-527 1322-1437(2473)
460 TIGR01541 tape_meas_lam_C phag 30.9 7.9E+02 0.017 27.4 12.8 22 584-605 153-174 (332)
461 TIGR00998 8a0101 efflux pump m 30.8 6.7E+02 0.014 26.6 11.9 18 593-610 193-210 (334)
462 PRK03598 putative efflux pump 30.8 4.7E+02 0.01 28.0 10.9 19 511-529 151-169 (331)
463 KOG0998 Synaptic vesicle prote 30.6 1.3E+02 0.0028 37.4 7.4 67 453-526 459-526 (847)
464 PF12240 Angiomotin_C: Angiomo 30.6 2.2E+02 0.0048 30.1 7.9 69 520-597 14-93 (205)
465 PF08606 Prp19: Prp19/Pso4-lik 30.3 2.2E+02 0.0049 25.5 6.8 33 542-574 20-52 (70)
466 PF10211 Ax_dynein_light: Axon 30.3 5.6E+02 0.012 26.2 10.7 18 543-560 126-143 (189)
467 KOG4677 Golgi integral membran 30.3 1E+03 0.022 28.4 20.5 47 501-547 311-358 (554)
468 PRK00286 xseA exodeoxyribonucl 30.1 6.1E+02 0.013 28.6 12.0 109 399-531 274-391 (438)
469 PF04977 DivIC: Septum formati 30.0 92 0.002 26.2 4.4 10 543-552 44-53 (80)
470 PRK05771 V-type ATP synthase s 29.9 2.5E+02 0.0055 33.3 9.4 41 533-573 89-129 (646)
471 KOG4302 Microtubule-associated 29.9 2.1E+02 0.0045 34.9 8.6 102 502-626 57-159 (660)
472 PF12711 Kinesin-relat_1: Kine 29.8 2.6E+02 0.0056 25.9 7.3 81 519-602 6-86 (86)
473 TIGR02231 conserved hypothetic 29.7 5E+02 0.011 30.0 11.5 87 512-606 71-172 (525)
474 PF12325 TMF_TATA_bd: TATA ele 29.6 2.8E+02 0.006 26.8 7.9 25 540-564 64-88 (120)
475 PF08912 Rho_Binding: Rho Bind 29.3 2.8E+02 0.0062 24.8 7.3 60 519-592 3-65 (69)
476 KOG2077 JNK/SAPK-associated pr 29.2 3.1E+02 0.0068 33.2 9.6 86 392-482 314-407 (832)
477 KOG0240 Kinesin (SMY1 subfamil 28.9 1E+03 0.022 29.0 13.6 121 416-566 419-539 (607)
478 PRK05431 seryl-tRNA synthetase 28.9 1.3E+02 0.0028 34.2 6.5 48 510-558 40-87 (425)
479 KOG4657 Uncharacterized conser 28.5 7.9E+02 0.017 26.7 12.0 48 394-441 27-79 (246)
480 KOG1937 Uncharacterized conser 28.5 9.9E+02 0.021 28.4 13.1 185 401-605 276-467 (521)
481 TIGR00618 sbcc exonuclease Sbc 28.4 1.3E+03 0.028 29.2 22.5 48 437-488 706-753 (1042)
482 PF07795 DUF1635: Protein of u 28.3 1.7E+02 0.0038 31.0 6.8 50 472-531 2-52 (214)
483 PF03961 DUF342: Protein of un 28.3 1.2E+02 0.0026 34.4 6.1 74 502-575 330-406 (451)
484 PRK10636 putative ABC transpor 28.2 2.1E+02 0.0046 33.9 8.4 64 510-574 561-628 (638)
485 COG2433 Uncharacterized conser 28.1 4.8E+02 0.01 31.8 10.9 48 510-561 420-467 (652)
486 TIGR01063 gyrA DNA gyrase, A s 27.8 7E+02 0.015 31.0 12.7 40 513-552 428-470 (800)
487 COG0172 SerS Seryl-tRNA synthe 27.7 3.3E+02 0.0071 31.6 9.4 13 609-621 115-127 (429)
488 PF10805 DUF2730: Protein of u 27.6 1.8E+02 0.0039 27.1 6.2 84 401-513 23-106 (106)
489 PF10481 CENP-F_N: Cenp-F N-te 27.6 2E+02 0.0043 31.8 7.2 24 631-654 104-127 (307)
490 KOG4438 Centromere-associated 27.6 1.1E+03 0.023 27.8 16.3 130 476-609 150-302 (446)
491 PF04899 MbeD_MobD: MbeD/MobD 27.5 1.1E+02 0.0023 27.2 4.4 31 673-703 30-60 (70)
492 PF12072 DUF3552: Domain of un 27.5 6.8E+02 0.015 25.6 18.4 29 575-603 147-175 (201)
493 cd07677 F-BAR_FCHSD2 The F-BAR 27.5 3.6E+02 0.0078 29.4 9.2 54 472-536 107-161 (260)
494 KOG4460 Nuclear pore complex, 27.4 5.6E+02 0.012 31.1 11.2 130 449-595 558-717 (741)
495 TIGR01554 major_cap_HK97 phage 26.8 4.4E+02 0.0095 29.0 10.0 19 474-492 2-20 (378)
496 PF10359 Fmp27_WPPW: RNA pol I 26.8 1.4E+02 0.003 34.5 6.3 71 490-560 145-223 (475)
497 PF06705 SF-assemblin: SF-asse 26.7 7.5E+02 0.016 25.8 19.7 26 465-490 86-111 (247)
498 KOG0804 Cytoplasmic Zn-finger 26.5 4.9E+02 0.011 30.7 10.4 20 417-436 338-359 (493)
499 PF02388 FemAB: FemAB family; 26.5 2.2E+02 0.0047 32.1 7.7 57 512-576 242-298 (406)
500 COG3352 FlaC Putative archaeal 26.4 7.2E+02 0.016 25.5 11.2 136 431-570 5-141 (157)
No 1
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.96 E-value=1.1e-28 Score=233.23 Aligned_cols=114 Identities=84% Similarity=1.289 Sum_probs=109.1
Q ss_pred EEEEecceEEccCCCCCCCeE------------------------EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVV------------------------FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLK 103 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yV------------------------vY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lk 103 (724)
|||.||||..+++++++++.+ +|.|+|++++|++....|.|.||||||++||..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~ 80 (138)
T cd06879 1 YCVFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLK 80 (138)
T ss_pred CcEeccceeEeccccCCCCccccccccccccceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHH
Confidence 799999999999998888766 99999999999998999999999999999999999
Q ss_pred HHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 104 KAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 104 k~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
+.||...+||+|||+++++++++|||+||.+||.||++|++||.+++++.|++||+++
T Consensus 81 ~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 81 KLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 9999988999999999999999999999999999999999999999999999999986
No 2
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.92 E-value=1.4e-24 Score=199.80 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=100.5
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeec---CCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS---PEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS 124 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs---pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s 124 (724)
|.|+||+.....++.+++.|++|.|.|.... +......|.|.||||||.+||..|++.||...+|+||+|+++++++
T Consensus 3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~ 82 (119)
T cd06877 3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKS 82 (119)
T ss_pred ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCC
Confidence 5899999988765457789999999996421 1223469999999999999999999999988889999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 125 RALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 125 ~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
++||++||.+||.||+.|+.||.++.|..|+.||+.
T Consensus 83 ~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 83 YEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence 999999999999999999999999999999999975
No 3
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.92 E-value=1.7e-24 Score=196.15 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=98.4
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.|.|..+...++ +.++||+|.|++.+..+.+....|.|.||||||.|||..|+..||+..+||+|+|+++++++++||
T Consensus 2 ~i~V~dp~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi 79 (112)
T cd06861 2 EITVGDPHKVGD--LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV 79 (112)
T ss_pred EEEEcCcceecC--CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence 455555555433 467899999999877666667899999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++||.+||.||++|+.||.|++|+.|+.||+.+
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 999999999999999999999999999999864
No 4
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.91 E-value=4.2e-24 Score=195.48 Aligned_cols=109 Identities=23% Similarity=0.390 Sum_probs=98.2
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---CCCCCCCCcccC----
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---NIPPAPPKGLLR---- 121 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~---~LPpLPPKk~fg---- 121 (724)
.|.||+|..+....++++||+|.|+|.+..+ ....|.|.||||||.+||..|+..||.. .+||||+|++++
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~ 81 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRV 81 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccc
Confidence 6899999987655457899999999965543 2369999999999999999999999986 799999999887
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913 122 MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (724)
Q Consensus 122 ~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE 159 (724)
+++++|||+||.+||.||+.|+.||.|++|+.|++||+
T Consensus 82 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 82 NLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 78899999999999999999999999999999999997
No 5
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.91 E-value=8.1e-24 Score=194.28 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=90.2
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWM 139 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---~~s~eFLEERR~gLEkYL 139 (724)
++++||+|.|+|.+..+++....|+|.||||||.+||..|+..||+..+||+|+|.++. +++++|||+||.+||.||
T Consensus 19 ~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~fie~Rr~~Le~fL 98 (120)
T cd06865 19 GGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYL 98 (120)
T ss_pred CCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccccCCHHHHHHHHHHHHHHH
Confidence 56899999999976666666789999999999999999999999999999999998764 258999999999999999
Q ss_pred HHHhcccCCCCCHHHhhccCcc
Q 004913 140 TKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 140 qrLLshP~Ls~S~~L~sFLElE 161 (724)
++|+.||.|++|+.|+.||+.+
T Consensus 99 ~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06865 99 NRLAAHPVIGLSDELRVFLTLQ 120 (120)
T ss_pred HHHHcCceeecCcHHHHhccCC
Confidence 9999999999999999999864
No 6
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.90 E-value=2.1e-23 Score=192.33 Aligned_cols=111 Identities=30% Similarity=0.430 Sum_probs=96.0
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC----
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM---- 122 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~---- 122 (724)
.|.|..+....+ +.++||+|.|.+.+..+......|.|.||||||++||..|...|| ++.+||+|+|+++++
T Consensus 2 ~i~V~~p~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~ 79 (124)
T cd07281 2 KVSITDPEKIGD--GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 79 (124)
T ss_pred EEEEcCCeEeeC--CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence 467777776543 568999999999766666666899999999999999999999997 356899999987653
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 123 ------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 123 ------~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++++|||+||.+||.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~~ 124 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEKE 124 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCCC
Confidence 478999999999999999999999999999999999864
No 7
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.89 E-value=3.9e-23 Score=190.76 Aligned_cols=110 Identities=23% Similarity=0.417 Sum_probs=95.6
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCC--------cceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGIT--------TTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL 120 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~--------~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f 120 (724)
.|.||++...... +.++||+|.|.|.+..+.+.. ..|.|.||||||.+||..|++.||...+||||+|+++
T Consensus 3 ~v~vp~~~~~~~~-~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 3 DLTVPEYQEIRGK-TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred ceecCCceeecCC-CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 5889999876543 567899999998654332221 3799999999999999999999999889999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 121 g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
+ +++||++||.+||.||++|++||.|++|+.|..||.+.
T Consensus 82 ~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 6 78999999999999999999999999999999999863
No 8
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.89 E-value=3.7e-23 Score=192.26 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=96.0
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
|.|+|..+...++..|+++||+|.|.+.. ..|.|.||||||.+||..|.+.||...+||+|+|.++++++++|
T Consensus 1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~f 73 (125)
T cd06862 1 YHCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDF 73 (125)
T ss_pred CEEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHH
Confidence 45677777665544577899999999832 48999999999999999999999998999999999998889999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|++||.+|+.||++|++||.|++|+.|+.||+.+
T Consensus 74 ie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~ 107 (125)
T cd06862 74 IEKRRERLELWMNRLARHPVLSQSEVFRHFLTCT 107 (125)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCc
Confidence 9999999999999999999999999999999876
No 9
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.89 E-value=3.6e-23 Score=186.80 Aligned_cols=106 Identities=24% Similarity=0.431 Sum_probs=94.0
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~e 126 (724)
+.|.|.+|.++.+ .++||+|.|+|.... +..|.|.||||||.+||..|++.||. .+|+||||++++ +++++
T Consensus 4 ~~~~i~~~~~~~~---~~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~~~~~~ 75 (110)
T cd07276 4 IRPPILGYEVMEE---RARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKDNFDPD 75 (110)
T ss_pred ccceeeeEEEeec---CCCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecccCCHH
Confidence 4789999987543 468999999996432 36999999999999999999999998 578999998776 57899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
||++||.+||.||+.|++||.|++|+.|++||+++
T Consensus 76 fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 76 FLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999999999875
No 10
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.89 E-value=3.8e-23 Score=193.33 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=94.8
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.|+|..+...+...|.++||+|.|.+. ...|.|.||||||+|||..|...||++.+||+|+|.++++++++||
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FI 74 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPS-------HTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFI 74 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEe-------cCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHH
Confidence 456666665554457789999999862 2479999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++||++||.||++|+.||.|++|+.|+.||+.+
T Consensus 75 e~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 75 SKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 999999999999999999999999999999975
No 11
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.89 E-value=6e-23 Score=187.15 Aligned_cols=109 Identities=25% Similarity=0.284 Sum_probs=94.1
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eF 127 (724)
.|+.|.... +. ++++||+|.|.|.+..+......|.|.||||||.+||..|+..+|...+||||+|+++++++ ++|
T Consensus 3 ~V~dP~~~~--~~-~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~f 79 (113)
T cd06898 3 EVRDPRTHK--ED-DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGF 79 (113)
T ss_pred EEeCCcEec--CC-CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHH
Confidence 455555553 21 46789999999976555444578999999999999999999999988899999999888776 999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
|++||.+||.||++|+.||.|.+++.|+.||+.
T Consensus 80 ie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 80 IEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 999999999999999999999999999999974
No 12
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.89 E-value=6.2e-23 Score=191.22 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=94.3
Q ss_pred EEEecceEEccCCCC---CCCeEEEEEEEeeecCCC----CCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-
Q 004913 49 CVTIPSWVVLPKSRD---SDPVVFYRVQVGLQSPEG----ITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL- 120 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~---sk~yVvY~IqV~iqspeg----i~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f- 120 (724)
.|+|........+.+ +++||+|.|+|.+..+.. ....|.|.||||||.+||..|...||...+||||+|+++
T Consensus 2 ~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~ 81 (129)
T cd06864 2 EITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMF 81 (129)
T ss_pred eeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceec
Confidence 355666554444333 568999999997655432 257899999999999999999999999999999999753
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 121 -------RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 121 -------g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++++++||++||.+||.||++|++||.|++|+.|..||+.+
T Consensus 82 ~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 82 MWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 36789999999999999999999999999999999999753
No 13
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.89 E-value=5.2e-23 Score=190.60 Aligned_cols=109 Identities=25% Similarity=0.396 Sum_probs=91.9
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC-----
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM----- 122 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~----- 122 (724)
|+|..+....+ +.++|++|.|++.+..+......|.|.||||||+|||..|++.|| +..+||+|+|.+++.
T Consensus 3 i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 3 IGVSDPEKVGD--GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred EEEeCCeEecC--CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 44444444332 567899999999765555556799999999999999999999997 567999999987653
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 123 -----KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 123 -----~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
++++|||+||.+||.||++|++||.|++|+.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 47899999999999999999999999999999999985
No 14
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.89 E-value=7.9e-23 Score=182.31 Aligned_cols=103 Identities=32% Similarity=0.494 Sum_probs=94.2
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--CCCHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR--MKSRA 126 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg--~~s~e 126 (724)
.|+||++... +++|++|.|.|... ...|.|.||||||.+||..|++.+|...+|+||+|.+++ +++++
T Consensus 2 ~v~ip~~~~~-----~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~ 71 (108)
T cd06897 2 EISIPTTSVS-----PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPK 71 (108)
T ss_pred eEEcCCeEEc-----CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHH
Confidence 5899999875 36799999999543 469999999999999999999999988889999999887 78899
Q ss_pred HHHHHHHHHHHHHHHHhccc--CCCCCHHHhhccCcc
Q 004913 127 LLEERRCSLEEWMTKLLSDI--DLSRSVSVASFLELE 161 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP--~Ls~S~~L~sFLElE 161 (724)
|||+||.+||.||+.|++|| .+++|+.|++||+++
T Consensus 72 ~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 72 LVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 99999999999999999999 999999999999874
No 15
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.89 E-value=8.6e-23 Score=185.95 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=95.3
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-----CC
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-----RM 122 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-----g~ 122 (724)
.+|++|.... + .++++||+|.|.|.+..+.+....|.|.||||||.+||+.|.+.||+..+||||+|..+ ++
T Consensus 3 i~V~dP~~~~--~-~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~ 79 (118)
T cd06863 3 CLVSDPQKEL--D-GSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR 79 (118)
T ss_pred EEEeCccccc--C-CCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence 3566666553 1 25789999999997666655567899999999999999999999999999999999754 35
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 123 KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 123 ~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
++++||++||.+||.||++|+.||.|++|+.|..||+.
T Consensus 80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 68999999999999999999999999999999999974
No 16
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.89 E-value=7.1e-23 Score=184.99 Aligned_cols=103 Identities=27% Similarity=0.418 Sum_probs=92.9
Q ss_pred eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 004913 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (724)
Q Consensus 47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~e 126 (724)
+..|+||++..+.+. +++||+|.|+|. ..|.|.||||||.+||..|++.||...+|++|+|++++ ++++
T Consensus 3 ~~~i~Ip~~~~~~~~--~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~ 71 (106)
T cd06886 3 SVPISIPDYKHVEQN--GEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQ 71 (106)
T ss_pred cceEecCCcceEcCC--CCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHH
Confidence 568999999875543 568999999882 37999999999999999999999998899999999886 4679
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
|||+||.+||.||+.|++||.|++|+.|+.||+-
T Consensus 72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999999999974
No 17
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.89 E-value=7.7e-23 Score=184.99 Aligned_cols=110 Identities=26% Similarity=0.327 Sum_probs=95.6
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC-CCCCCCCcccCCCCHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN-IPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~-LPpLPPKk~fg~~s~eF 127 (724)
.+.|+++.++.. ++++||+|.|+|.... .+....|.|.||||||.+||..|++.||... .|++|+|+++++++++|
T Consensus 2 ~~~i~~~~~~~~--~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~ 78 (112)
T cd07279 2 KFEIVSARTVKE--GEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSEL 78 (112)
T ss_pred eEEeccCeEEcC--CCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHH
Confidence 467888887655 4679999999996443 2224679999999999999999999999754 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|++||.+||.||+.|++||.|++|+.|++||+.+
T Consensus 79 ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd07279 79 IAERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP 112 (112)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence 9999999999999999999999999999999863
No 18
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.89 E-value=9.5e-23 Score=186.26 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=94.2
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR 125 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f----g~~s~ 125 (724)
|+|.++....+ +.++||+|.|.+.+..+......|.|.||||||.|||..|...||+..+||||+|..+ +++++
T Consensus 3 v~V~dP~~~~~--~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 3 ITVDNPEKHVT--TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred EEEcCCeeccC--CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 45555554333 4678999999997666655567999999999999999999999999999999999863 45789
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+||++||.+||.||++|+.||.|++|+.|+.||+.
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 19
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.89 E-value=7.2e-23 Score=184.60 Aligned_cols=105 Identities=31% Similarity=0.505 Sum_probs=93.4
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~eF 127 (724)
.|+||++..... .++.|++|.|+|... ...|.|.||||||.+||..|++.||... |+||+|++++ +.+++|
T Consensus 4 ~~~i~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~~~~~~-~~lP~K~~~~~~~~~~~ 75 (109)
T cd06870 4 SVSIPSSDEDRE--KKKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQFPASN-LKIPGKRLFGNNFDPDF 75 (109)
T ss_pred ceeeccceeecc--CCCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHHCcccC-cCCCCCcccccCCCHHH
Confidence 589999886543 468899999999543 3699999999999999999999999864 5799999998 789999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|++||.+||.||+.|++||.|++|+.|++||+++
T Consensus 76 ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 76 IKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 9999999999999999999999999999999874
No 20
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.89 E-value=8.3e-23 Score=189.01 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=94.1
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------- 120 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-------- 120 (724)
.|+|-.+....+ +.++|++|.|.+.+..+......|.|.||||||.|||..|.+. |+..+||||+|.++
T Consensus 3 ~i~V~dP~~~~~--~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd06894 3 EIDVVNPQTHGV--GKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD 79 (123)
T ss_pred EEEEeCCcEecC--CCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence 344555544333 4689999999997666655567999999999999999999876 88899999999864
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
++++++|||+||.+|+.||++|++||.|++|+.|+.||+.+.
T Consensus 80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~ 122 (123)
T cd06894 80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET 122 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence 567899999999999999999999999999999999998764
No 21
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.89 E-value=1.2e-22 Score=186.31 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=96.3
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.|.|-.+....+ +.+.|++|.|.+.+..+......|.|.||||||.+||..|+..||...+||+|+|.++++++++||
T Consensus 3 ~i~V~dP~~~~~--g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~i 80 (116)
T cd07295 3 EIEVRNPKTHGI--GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVI 80 (116)
T ss_pred EEEEeCCcEecC--CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHH
Confidence 344444444333 568899999998766665556789999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHhcccCCC-CCHHHhhccCcch
Q 004913 129 EERRCSLEEWMTKLLSDIDLS-RSVSVASFLELEA 162 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls-~S~~L~sFLElEa 162 (724)
|+||.+||.||++|+.||.|+ +++.|+.||+.+.
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 999999999999999999998 6899999999864
No 22
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.88 E-value=8.5e-23 Score=184.71 Aligned_cols=101 Identities=24% Similarity=0.436 Sum_probs=88.4
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC--------
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-------- 121 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-------- 121 (724)
|.|+....+.+. ++++||+|.|+|. .|+|.||||||.+||..|++.||...+||||+|..+.
T Consensus 2 ~~i~~~~~~~~~-~~~~y~~Y~I~~~---------~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 71 (112)
T cd06867 2 IQIVDAGKSSEG-GSGSYIVYVIRLG---------GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSK 71 (112)
T ss_pred cEEccCccccCC-CccCEEEEEEEee---------eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhcccccc
Confidence 456777665443 4678999999983 4999999999999999999999999999999997542
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+++++|||+||.+||.||+.|+.||.|++|+.|++||+.
T Consensus 72 ~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06867 72 AKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDP 111 (112)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCC
Confidence 467999999999999999999999999999999999975
No 23
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.88 E-value=1e-22 Score=183.19 Aligned_cols=110 Identities=25% Similarity=0.459 Sum_probs=94.4
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCH--HH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSR--AL 127 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~--eF 127 (724)
|.|..+..+.+ +.++||+|.|.|.+..+++....|.|.||||||.+||+.|++.||+..+|+||+|.+++..+. +|
T Consensus 3 ~~V~~p~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 3 ISVTDPVKVGD--GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred EEEeCcceecC--CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 44555554433 467999999999766655556789999999999999999999999989999999998887654 59
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|++||.+||.||+.|++||.|++|+.|+.||+.+
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 9999999999999999999999999999999754
No 24
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.88 E-value=1.5e-22 Score=184.41 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=94.7
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCC-CCCCCCcccCCCCHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNI-PPAPPKGLLRMKSRAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~L-PpLPPKk~fg~~s~eF 127 (724)
.|.|+++.++.+ +++.||+|+|+|.. .+......|.|.||||||.+||..|+..||.... +++|+|+++++++++|
T Consensus 2 ~~~v~~~~~~~~--~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~ 78 (112)
T cd07301 2 LFEVTDANVVQD--AHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAET 78 (112)
T ss_pred EEEECCCeEecc--CCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHH
Confidence 467788877654 46789999999952 2223356899999999999999999999997533 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|++||.+||.||++|++||.|+.|+.|++||.++
T Consensus 79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l~ 112 (112)
T cd07301 79 IAKRSRAFEQFLCHLHSLPELRASPAFLEFFYLR 112 (112)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCCC
Confidence 9999999999999999999999999999999874
No 25
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.88 E-value=1.9e-22 Score=185.31 Aligned_cols=112 Identities=27% Similarity=0.376 Sum_probs=99.7
Q ss_pred eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHH
Q 004913 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA 126 (724)
Q Consensus 47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~e 126 (724)
-.+++|+++..+.+ +++.||+|.|+|....+++....|.|.||||||.+||..|++.||...+|++|+|.++++.+++
T Consensus 4 ~~~~~i~~~~~~~~--~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~ 81 (120)
T cd06873 4 KLTAVIINTGIVKE--HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRA 81 (120)
T ss_pred EEEEEEeccEEEcc--CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHH
Confidence 35889999998765 5788999999997766554567999999999999999999999998888999999999988999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCH----HHhhccCc
Q 004913 127 LLEERRCSLEEWMTKLLSDIDLSRSV----SVASFLEL 160 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP~Ls~S~----~L~sFLEl 160 (724)
||++||.+||.||+.|+++|.|++|+ .|.+||+.
T Consensus 82 ~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 82 FLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 99999999999999999999999995 67777763
No 26
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.88 E-value=1.5e-22 Score=185.32 Aligned_cols=110 Identities=27% Similarity=0.330 Sum_probs=95.2
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC-CCCCCCCCcccCCCCHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-NIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~-~LPpLPPKk~fg~~s~eFL 128 (724)
+.||++..+.. +.++||+|.|.|. +.+......|+|.||||||.+||..|.+.|+.. ..|++|+|+++++++++||
T Consensus 3 ~~i~~~~~~~~--~~~~yv~Y~i~~~-~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~i 79 (114)
T cd07300 3 FEIPSARIIEQ--TISKHVVYQIIVI-QTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEII 79 (114)
T ss_pred EEecCceeecc--CCcceEEEEEEEE-EecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHH
Confidence 68999987644 4577999999873 222233569999999999999999999999864 4788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
++||.+||.||++|++||.|+.|+.|++||+.+.
T Consensus 80 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 80 AERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred HHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 9999999999999999999999999999998763
No 27
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.88 E-value=1.7e-22 Score=187.27 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=94.7
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc--------
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-------- 120 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-------- 120 (724)
.|.|..+....+ +.++||+|.|.+.+..|......|.|.||||||.|||..|+.. |+..+||||+|.++
T Consensus 3 ~i~v~dP~~~~~--~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd07293 3 EIDVTNPQTVGV--GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPFRGD 79 (123)
T ss_pred EEEecCCeEecC--CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhcccccc
Confidence 455666655444 4689999999998777766567999999999999999999865 77889999999865
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++++++|||+||++||.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 36789999999999999999999999999999999999875
No 28
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.88 E-value=1.6e-22 Score=185.69 Aligned_cols=109 Identities=25% Similarity=0.289 Sum_probs=93.7
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc----CCCCH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL----RMKSR 125 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f----g~~s~ 125 (724)
|.|.++....+ +.++|++|.|.+.+..+.+....|.|.||||||+|||..|...||+..+||||+|..+ +++++
T Consensus 3 i~V~dP~~~~~--~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd07283 3 VTVDDPKKHVC--TMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE 80 (116)
T ss_pred EEEcCcceecC--CCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence 34444444332 4678999999998777777778999999999999999999999999999999999643 34679
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+|||+||.+||.||++|+.||.|++|+.|..||..
T Consensus 81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 29
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.88 E-value=1.5e-22 Score=185.29 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=94.3
Q ss_pred ceEEEEecceEEccCCCCCCCeEEEEEEEeeec--CCCCCcceEEEccchhHHHHHHHHHHHCCC----CCCCCCCCCcc
Q 004913 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS--PEGITTTRGVLRRFNNFLKLFTDLKKAFPK----KNIPPAPPKGL 119 (724)
Q Consensus 46 wSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs--pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~----~~LPpLPPKk~ 119 (724)
|+..++|+.+... +++||+|.|.+.+.. ..+....|.|.||||||.+||..|++.||. ..+||||+|++
T Consensus 1 ~~~~~~V~d~~~~-----~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~ 75 (117)
T cd06881 1 WSRSFTVTDTRRH-----KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKY 75 (117)
T ss_pred CcEEEEecCccee-----cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcc
Confidence 7788899888864 257999999996421 112235899999999999999999999863 35799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913 120 LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (724)
Q Consensus 120 fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE 159 (724)
+++++++||++||.+||.||++|++||.|++|+.|++||+
T Consensus 76 ~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 115 (117)
T cd06881 76 FGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFE 115 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhc
Confidence 9999999999999999999999999999999999999996
No 30
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.88 E-value=2.1e-22 Score=189.02 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=100.5
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f------- 120 (724)
+.|+|-++..+.+ +.++||+|.|.+.+..|.+....|.|.||||||.|||+.|.+. |+..+||||+|.++
T Consensus 4 ~~i~v~dP~~~~~--g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 4 LEIDIFNPQTVGV--GRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred EEEEeeCCeEecC--CCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccccc
Confidence 4677777766554 5688999999987666655567999999999999999999865 77789999999852
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhhh
Q 004913 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167 (724)
Q Consensus 121 --g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs~ 167 (724)
++++++||++||.+||.||++|++||.|++++.|+.||+.+...|.|
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~ 129 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNY 129 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCccc
Confidence 35689999999999999999999999999999999999999887765
No 31
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.88 E-value=3.1e-22 Score=186.36 Aligned_cols=111 Identities=27% Similarity=0.398 Sum_probs=98.8
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC--CH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK--SR 125 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~--s~ 125 (724)
+.|.||++....+. ++++|++|.|+|....++.....|.|.||||||.+||..|++.||...+|+||+|++++.. ++
T Consensus 20 ~~i~I~~~~~~~~~-~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~ 98 (133)
T cd06876 20 TRVSIQSYISDVEE-EGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKT 98 (133)
T ss_pred ceEEEeeEEeeecC-CCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCH
Confidence 58999999875543 4789999999997655432346999999999999999999999999889999999988865 79
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (724)
Q Consensus 126 eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE 159 (724)
+||++||.+||.||+.|+.+|.+++|+.|..||+
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999995
No 32
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.87 E-value=4.6e-22 Score=182.83 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=89.6
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CCCHHHHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MKSRALLEERRCSLEEW 138 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----~~s~eFLEERR~gLEkY 138 (724)
+.++|+.|.|.+.+..+......|.|.||||||.|||..|...||+..+||+|+|.+++ .++++||++||++||.|
T Consensus 14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~F 93 (116)
T cd07284 14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKF 93 (116)
T ss_pred CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHH
Confidence 56799999999987777766789999999999999999999999999999999997543 46899999999999999
Q ss_pred HHHHhcccCCCCCHHHhhccCc
Q 004913 139 MTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 139 LqrLLshP~Ls~S~~L~sFLEl 160 (724)
|++|+.||.|++|+.|+.||+.
T Consensus 94 L~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 94 LNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHcCcccccChHHHHhhcC
Confidence 9999999999999999999974
No 33
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.87 E-value=3e-22 Score=187.88 Aligned_cols=111 Identities=31% Similarity=0.390 Sum_probs=90.9
Q ss_pred EEecceEEccCCC--CCCCeEEEEEEEeeec-----------CCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCC
Q 004913 50 VTIPSWVVLPKSR--DSDPVVFYRVQVGLQS-----------PEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPA 114 (724)
Q Consensus 50 VsIPS~~~v~~s~--~sk~yVvY~IqV~iqs-----------pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpL 114 (724)
|+||+|+..++.. |.++||+|.|++.+.. |......|.|.||||||++||..|+...+ ....+++
T Consensus 2 ~~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~ 81 (132)
T cd06893 2 IRIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKG 81 (132)
T ss_pred ccccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCC
Confidence 7899999876553 5679999999985432 23445799999999999999999998643 1222456
Q ss_pred CCCcc----cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 115 PPKGL----LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 115 PPKk~----fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
|+|++ +++++++|||+||.+||.||++|++||.|++|++|++||.+
T Consensus 82 P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 82 PPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 66654 57788999999999999999999999999999999999975
No 34
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.87 E-value=5.7e-22 Score=184.39 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=94.1
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeec-----CCCCCcceEEEccchhHHHHHHHHHHHCCCC--CCCCCCCCccc
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQS-----PEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--NIPPAPPKGLL 120 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqs-----pegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~--~LPpLPPKk~f 120 (724)
|.|.||+...+.. +++.|++|.|.|.... ++.....|+|.||||||..||.+|++.||.. ..+|+|||+++
T Consensus 9 w~~~I~~~~~~~~--~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~ 86 (127)
T cd06878 9 WRANIQSAEVTVE--DDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWF 86 (127)
T ss_pred ceEEEeeeEEEcC--CCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCcccc
Confidence 4899999987444 5688999999997653 2334678999999999999999999999963 23345667777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 121 RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 121 g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+..+++|||+||.+||+||+.|+.+|.|++|+.|.+||+.
T Consensus 87 ~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 87 KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 7789999999999999999999999999999999999974
No 35
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.87 E-value=5.5e-22 Score=185.40 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=91.9
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~-~~LPpLPPKk~fg~~s~eFL 128 (724)
|.|..+....+..+.+.||.|.|... +..+.|.||||||+|||..|...||. ..+||+|+|.++++++++||
T Consensus 3 ~~V~dp~k~~~~~g~~~Yv~Y~I~~~-------~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FI 75 (126)
T cd07285 3 CVVADPRKGSKMYGLKSYIEYQLTPT-------NTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFI 75 (126)
T ss_pred EEEcCcccccCCCCCcCeEEEEEEec-------cCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHH
Confidence 44445554444456789999999873 24789999999999999999999974 56999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
++||.+||.||++|++||.|++++.|+.||+....
T Consensus 76 e~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 76 KMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 99999999999999999999999999999987543
No 36
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.87 E-value=5.5e-22 Score=179.68 Aligned_cols=103 Identities=31% Similarity=0.376 Sum_probs=89.4
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-CCCCHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL-RMKSRAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f-g~~s~eF 127 (724)
.|.|.....+.. ++++|++|.|.|.... ...|.|.||||||.+||..|++ +|.. .|+||||+++ ++.+++|
T Consensus 2 ~~~v~~~~~~~~--~~~~y~vY~I~v~~~~----~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~~~~~~f 73 (107)
T cd06872 2 SCRVLGAEIVKS--GSKSFAVYSVAVTDNE----NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSSSLDGAF 73 (107)
T ss_pred eeEEeeeEEEec--CCccEEEEEEEEEECC----CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCCCCCHHH
Confidence 578888887644 4678999999995322 3699999999999999999997 5654 5789999887 5778999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLE 159 (724)
|++||.+||.||+.|+++|.|++|+.|++||.
T Consensus 74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 99999999999999999999999999999995
No 37
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.87 E-value=6.8e-22 Score=181.19 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=94.0
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
..|+||++... +.||+|.|+|.+. ...|.|.||||||.+||..|++.++ ...|++|||+++++.+++|
T Consensus 4 ~~v~I~~~~~~------~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~~~-~~~~~~P~Kk~~~~~~~~~ 71 (116)
T cd06875 4 TKIRIPSAETV------EGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAEHK-VDKDLLPPKKLIGNKSPSF 71 (116)
T ss_pred EEEEECCEEEE------CCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHHcC-cccCcCCCccccCCCCHHH
Confidence 47999999863 6799999999643 3589999999999999999999994 4678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
|++||.+||.||+.|++++.++.|+.|++||++..+
T Consensus 72 ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~ 107 (116)
T cd06875 72 VEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY 107 (116)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence 999999999999999999999999999999998864
No 38
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.87 E-value=9.3e-22 Score=178.46 Aligned_cols=105 Identities=27% Similarity=0.424 Sum_probs=92.1
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
++|+||++..+.+. .+++|++|.|.|... ...|.|.||||||.+||..|++.|+ +|+||+|++ ++.+++|
T Consensus 1 ~~V~Ip~~~~~~~~-~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-~~~~~~~ 70 (110)
T cd06880 1 IEVSIPSYRLEVDE-SEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-RNWNPKV 70 (110)
T ss_pred CEEEeCcEEEeeCC-CCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-cCCCHHH
Confidence 37999999987654 467899999999643 2499999999999999999999997 799999987 4567899
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a 164 (724)
|++||.+||.||+.|+.+|. .+..|.+||+++.++
T Consensus 71 ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 71 LEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred HHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 99999999999999999998 699999999998653
No 39
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.86 E-value=1.5e-21 Score=175.94 Aligned_cols=90 Identities=29% Similarity=0.388 Sum_probs=84.1
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHh
Q 004913 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143 (724)
Q Consensus 64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLL 143 (724)
...|++|.|.+. . ..|.|.||||||.+||..|++.||...+|+||||+++++++++||++||.+||.||+.|+
T Consensus 15 ~~~y~~Y~i~~~--~-----~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~ 87 (105)
T cd06866 15 FLKHVEYEVSSK--R-----FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVA 87 (105)
T ss_pred ccCCEEEEEEEe--c-----CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 348999999984 2 489999999999999999999999999999999999998899999999999999999999
Q ss_pred cccCCCCCHHHhhccCc
Q 004913 144 SDIDLSRSVSVASFLEL 160 (724)
Q Consensus 144 shP~Ls~S~~L~sFLEl 160 (724)
.||.+++|+.|+.||..
T Consensus 88 ~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 88 RHPVLSEDELVRTFLTE 104 (105)
T ss_pred cChhhccChHHHhhcCC
Confidence 99999999999999974
No 40
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.86 E-value=1.8e-21 Score=175.13 Aligned_cols=100 Identities=31% Similarity=0.480 Sum_probs=90.0
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLE 129 (724)
|+||++....+. ++++||+|.|.|. ..|.+.||||||.+||..|.+.||...+|+||||++++ ++++|||
T Consensus 2 v~I~~~~~~~~~-~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie 71 (104)
T cd06885 2 FSIPDTQELSDE-GGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLE 71 (104)
T ss_pred CccCCcceeccC-CCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHH
Confidence 789998875553 5689999999982 36889999999999999999999988899999999885 5569999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHhhccC
Q 004913 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLE 159 (724)
Q Consensus 130 ERR~gLEkYLqrLLshP~Ls~S~~L~sFLE 159 (724)
+||.+||.||+.|+.||.++.|+.|++||.
T Consensus 72 ~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~ 101 (104)
T cd06885 72 ERRLQLEKYLQAVVQDPRIANSDIFNSFLL 101 (104)
T ss_pred HHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence 999999999999999999999999999995
No 41
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.85 E-value=2.8e-21 Score=178.18 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=83.7
Q ss_pred CCCeEEEEEEEeee--cCCCCCcceEEEccchhHHHHHHHHHHHCCCC-----CCCCCCCCcccCCCCHHHHHHHHHHHH
Q 004913 64 SDPVVFYRVQVGLQ--SPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK-----NIPPAPPKGLLRMKSRALLEERRCSLE 136 (724)
Q Consensus 64 sk~yVvY~IqV~iq--spegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~-----~LPpLPPKk~fg~~s~eFLEERR~gLE 136 (724)
+++|++|.|.+.+. .+......|.|+||||||.+||..|...+++. .+||+|+|.++++++++|||+||.+||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~fIeeRR~~Le 93 (118)
T cd07288 14 PKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAAVIEERRNAAE 93 (118)
T ss_pred CCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHHHHHHHHHHHH
Confidence 35699999997532 22222469999999999999999999877543 489999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCHHHhhccCc
Q 004913 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 137 kYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+||++|++||.|++|++|++||+-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 94 AMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHhCChhhcCChHHHHHHhc
Confidence 999999999999999999999963
No 42
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.85 E-value=4.6e-21 Score=176.98 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=83.0
Q ss_pred CCCeEEEEEEEeeecCC--CCCcceEEEccchhHHHHHHHHHHHCCC-----CCCCCCCCCcccCCCCHHHHHHHHHHHH
Q 004913 64 SDPVVFYRVQVGLQSPE--GITTTRGVLRRFNNFLKLFTDLKKAFPK-----KNIPPAPPKGLLRMKSRALLEERRCSLE 136 (724)
Q Consensus 64 sk~yVvY~IqV~iqspe--gi~~~w~V~RRYSDF~~Lh~~Lkk~fP~-----~~LPpLPPKk~fg~~s~eFLEERR~gLE 136 (724)
+++|++|.|.+.+.... .....|.|.||||||.+||..|...||. ..+||+|+|+++++++++|||+||.+||
T Consensus 14 ~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~fIe~RR~~Le 93 (118)
T cd07287 14 PKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESVIEERRQCAE 93 (118)
T ss_pred CCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHHHHHHHHHHH
Confidence 35699999988543211 1125899999999999999999998873 3579999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCHHHhhccCc
Q 004913 137 EWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 137 kYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
.||++|++||.|++|++|++||.-
T Consensus 94 ~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 94 DLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999963
No 43
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.85 E-value=6.3e-21 Score=175.97 Aligned_cols=107 Identities=28% Similarity=0.406 Sum_probs=95.1
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.|+||++...++ +++.|++|.|.|.+. ...|.|.||||||.+||.+|++.||....|++|||+++++.+++||
T Consensus 2 ~v~IPs~~~~g~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~i 74 (118)
T cd07277 2 NVWIPSVFLRGK--GSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFV 74 (118)
T ss_pred EEEcCcEEEecC--CCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHH
Confidence 689999997655 478999999999654 3699999999999999999999999887899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
|+||.+||.||+.|+.| .+..++.|..||+-.+.
T Consensus 75 e~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~~ 108 (118)
T cd07277 75 EERRKRLQVYLRRVVNT-LIQTSPELTACPSKETL 108 (118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHHH
Confidence 99999999999999998 67778889999976654
No 44
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.82 E-value=9.3e-20 Score=173.20 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=101.2
Q ss_pred CCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcce-EEEccchhHHHHHHHHHHHCCCCCCCCCCC
Q 004913 38 WPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR-GVLRRFNNFLKLFTDLKKAFPKKNIPPAPP 116 (724)
Q Consensus 38 wphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w-~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPP 116 (724)
-|........+.|.|.....++ +.|++|.|.+.+..|.+....+ .|.||||||+|||+.|...+|++.+||+|+
T Consensus 20 ~~~~~~~~~~l~i~Vtd~ek~G-----~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~ 94 (140)
T cd06891 20 EPERKKPKYFLRVRVTGIERNK-----SKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPL 94 (140)
T ss_pred CccccCCCceEEEEEeCceecC-----CCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCC
Confidence 3444555666788888877643 3577888888777787766666 799999999999999999999999999999
Q ss_pred Ccc-cCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 117 KGL-LRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 117 Kk~-fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
|.+ ++.++.+|+++||.+||.||++|+.||.|.+++.|+.||+.+
T Consensus 95 k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 95 PSTSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 985 477788999999999999999999999999999999999864
No 45
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.82 E-value=8.1e-20 Score=168.43 Aligned_cols=104 Identities=23% Similarity=0.323 Sum_probs=86.4
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.+.|+... +.++||+|.|.|.. +......|.|.||||||.+||+.|+... . .+|+|||+++++.+++||
T Consensus 9 ~~~i~~~~------~~~~~t~Y~I~v~~--~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~-~~plP~K~~~g~~~~~~i 77 (120)
T cd06871 9 TCVIEASQ------NIQSHTEYIIRVQR--GPSPENSWQVIRRYNDFDLLNASLQISG--I-SLPLPPKKLIGNMDREFI 77 (120)
T ss_pred EEEEecCC------CccCcEEEEEEEEE--CCcCCceeEEEeeHHHHHHHHHHHHHcC--C-CCCCCCccccCCCCHHHH
Confidence 45555544 35679999999953 2222469999999999999999998642 2 346999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
++||.+||.||+.|++||.+++|+.|..||+...+
T Consensus 78 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 112 (120)
T cd06871 78 AERQQGLQNYLNVILMNPILASCLPVKKFLDPNNY 112 (120)
T ss_pred HHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccC
Confidence 99999999999999999999999999999986644
No 46
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.80 E-value=3.9e-19 Score=152.52 Aligned_cols=105 Identities=35% Similarity=0.590 Sum_probs=93.7
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLE 129 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLE 129 (724)
|.|+.+..... +++.|++|.|.|.... ...|.|.||||||.+||..|+..+|...+|+||+|.+++..+.++++
T Consensus 2 i~I~~~~~~~~--~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~ 75 (106)
T cd06093 2 VSIPDYEKVKD--GGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIE 75 (106)
T ss_pred EEeCCceEEcC--CCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHH
Confidence 67888876543 4678999999996433 36899999999999999999999998899999999988877889999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 130 ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 130 ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+|+.+|+.||+.|+.+|.+.+++.|..||+.
T Consensus 76 ~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 76 ERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 9999999999999999999999999999963
No 47
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.80 E-value=2.8e-19 Score=165.75 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=90.9
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCcc
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGL 119 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPPKk~ 119 (724)
..++|+..... .+...|++|.|.|.... +..|.|+||||||.+||.+|++.||. ..+|+||+|++
T Consensus 4 i~~~I~~~~~~---~~~~~y~vY~I~v~~~~----~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~ 76 (123)
T cd06882 4 VSATIADIEEK---RGFTNYYVFVIEVKTKG----GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIY 76 (123)
T ss_pred EEEEEeeeeEE---eCCCCEEEEEEEEEEcC----CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCee
Confidence 46777776532 35688999999996533 25899999999999999999999995 46899999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcc
Q 004913 120 LRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELE 161 (724)
Q Consensus 120 fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElE 161 (724)
+++.+ +|+++||.+|+.||+.|++.|. +++|+.|++||...
T Consensus 77 ~~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~ 118 (123)
T cd06882 77 VGRKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQT 118 (123)
T ss_pred cCccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCC
Confidence 88765 9999999999999999999985 99999999999765
No 48
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.80 E-value=2.4e-19 Score=165.79 Aligned_cols=91 Identities=33% Similarity=0.461 Sum_probs=81.9
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL 142 (724)
+++.|++|.|+|.+.... ...|.|.||||||.+||..|++.||...+|+||+|++ .|+|+||.+||.||+.|
T Consensus 29 ~~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~L 100 (119)
T cd06869 29 RSKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSL 100 (119)
T ss_pred CCCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHH
Confidence 467899999999765432 4699999999999999999999999999999999975 68899999999999999
Q ss_pred hcccCCCCCHHHhhccCcc
Q 004913 143 LSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 143 LshP~Ls~S~~L~sFLElE 161 (724)
+++|.|++|+.|+.||..+
T Consensus 101 l~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 101 LKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred hcChhhhcChHHHHhhCCC
Confidence 9999999999999999753
No 49
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.80 E-value=3.7e-19 Score=161.44 Aligned_cols=105 Identities=22% Similarity=0.374 Sum_probs=89.4
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL 128 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~eFL 128 (724)
|+|.++...- ....|++|.|.|..... +..|.|.||||||.+||.+|++.||...+|+||+|+++++ ++++++
T Consensus 2 ~~i~~~~~~~---~~~~~~vY~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~ 75 (109)
T cd06883 2 VSVFGFQKRY---SPEKYYIYVVKVTRENQ---TEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVA 75 (109)
T ss_pred cEEEEEEEEe---cCCceEEEEEEEEECCC---CCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHH
Confidence 6777776421 23569999999965432 3579999999999999999999999999999999998875 457999
Q ss_pred HHHHHHHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913 129 EERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP-~Ls~S~~L~sFLEl 160 (724)
++|+.+|+.||+.|++.| .+++|+.|++||..
T Consensus 76 e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 76 ERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 999999999999999985 99999999999964
No 50
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.80 E-value=3.3e-19 Score=155.16 Aligned_cols=93 Identities=35% Similarity=0.621 Sum_probs=81.3
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC---CCCHHHHHHHHHHHHHHHH
Q 004913 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---MKSRALLEERRCSLEEWMT 140 (724)
Q Consensus 64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---~~s~eFLEERR~gLEkYLq 140 (724)
.+.+++|.|.|.+..+ ...|.|.||||||.+||..|+..||...+|+||+|.+++ ..+++++++|+.+||.||+
T Consensus 9 ~~~~~~~~~~v~~~~~---~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~ 85 (105)
T smart00312 9 DGKHYYYVIEIETKTG---LEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQ 85 (105)
T ss_pred CCceEEEEEEEEECCC---CceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHH
Confidence 3456666666655543 369999999999999999999999988899999998765 4679999999999999999
Q ss_pred HHhcccCCCC-CHHHhhccC
Q 004913 141 KLLSDIDLSR-SVSVASFLE 159 (724)
Q Consensus 141 rLLshP~Ls~-S~~L~sFLE 159 (724)
.|+++|.+++ |+.|.+||+
T Consensus 86 ~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 86 SLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHcCHhhhccChHHHHhcC
Confidence 9999999999 999999995
No 51
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.78 E-value=1.2e-18 Score=162.92 Aligned_cols=99 Identities=27% Similarity=0.443 Sum_probs=86.5
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.|+||+|...++ +.+.|++|.|.|... ...|.|.||||||.+||..|+..||....|++|+|+++++.+++||
T Consensus 2 ~i~Ip~~~~~~~--~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~i 74 (127)
T cd06874 2 KITIPRYVLRGQ--GKDEHFEFEVKITVL-----DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVA 74 (127)
T ss_pred EEEECCeEEecC--CCCcEEEEEEEEEEC-----CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHH
Confidence 689999987543 577899999999542 2479999999999999999999999887889999999999899999
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCCCHHH
Q 004913 129 EERRCSLEEWMTKLLSD-IDLSRSVSV 154 (724)
Q Consensus 129 EERR~gLEkYLqrLLsh-P~Ls~S~~L 154 (724)
|+||.+||.||+.|++. +.+..|+.+
T Consensus 75 e~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 75 KERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHHHHHhchhccCCccc
Confidence 99999999999999974 677777754
No 52
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.1e-18 Score=164.26 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=99.2
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRA 126 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~e 126 (724)
..|.|+...+. ..+...||-|.|.+.+..|......-+|.||||||.|||..|....+.+.+|+||+|.++.+ ...+
T Consensus 18 LeI~V~nPrt~--~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre 95 (144)
T KOG2527|consen 18 LEIDVINPRTH--GDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFRE 95 (144)
T ss_pred EEEEeeCCccc--ccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHH
Confidence 46666666652 23456799999999988887777888999999999999999999988889999999986654 3469
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a 164 (724)
|||+||+|||.||++++.||.+.++..|..||..+...
T Consensus 96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~ 133 (144)
T KOG2527|consen 96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELID 133 (144)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999887654
No 53
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.75 E-value=2.7e-18 Score=162.97 Aligned_cols=108 Identities=24% Similarity=0.326 Sum_probs=89.2
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC----
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---- 121 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg---- 121 (724)
+.|.|...... +.+|.|.|+..+..+.+....+.|.||||||.|||..|.. .||++.+||+|+|..++
T Consensus 3 l~i~vsD~~~~------~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~ 76 (141)
T cd07291 3 LQIDIPDALSE------RDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPRE 76 (141)
T ss_pred cEEEecccccc------CCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHH
Confidence 45666666532 3469999999877787777899999999999999999996 67999999999998652
Q ss_pred -----------CCCHHHHHHH--------------HHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 122 -----------MKSRALLEER--------------RCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 122 -----------~~s~eFLEER--------------R~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
+...+|++.| +++||.||++|++||.|.+++.|+.||+.+
T Consensus 77 k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 77 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 1235777755 467999999999999999999999999853
No 54
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.74 E-value=4.8e-18 Score=161.70 Aligned_cols=108 Identities=25% Similarity=0.315 Sum_probs=92.9
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCccc-----
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLL----- 120 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~--fP~~~LPpLPPKk~f----- 120 (724)
..|.|+.... -..+|.|.|+..+..|......+.|.||||||.|||..|... |+++.+||+|+|..+
T Consensus 3 ~~~~i~da~~------~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~ 76 (141)
T cd06892 3 LQVDISDALS------ERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASRE 76 (141)
T ss_pred eeeecccccc------cCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccc
Confidence 4677776653 235899999998888887788999999999999999999976 899999999999754
Q ss_pred ---------CCCCHHHHHHHHHHH---------------HHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 121 ---------RMKSRALLEERRCSL---------------EEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 121 ---------g~~s~eFLEERR~gL---------------EkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
+....+|+++|+.+| |.||++|+.||.|.++..|+.||+.+
T Consensus 77 k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 77 KLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred eeeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 135689999999999 58999999999999999999999853
No 55
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.73 E-value=1.5e-17 Score=144.14 Aligned_cols=107 Identities=32% Similarity=0.527 Sum_probs=91.4
Q ss_pred eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC---C
Q 004913 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM---K 123 (724)
Q Consensus 47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~---~ 123 (724)
...|.|.+.... +.+..++|.|+|..... ...|.|.|||+||.+||..|+..+|...+|++|+|.+++. .
T Consensus 3 ~~~v~v~~~~~~----~~~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~ 75 (113)
T PF00787_consen 3 IIQVSVVDPETS----GNKKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNL 75 (113)
T ss_dssp EEEEEEEEEEEE----SSSSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTT
T ss_pred EEEEEEcCCEEE----cCCCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccc
Confidence 357777777653 23456777777754443 4799999999999999999999999999999999987765 7
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 124 s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+++++++|+.+|+.||+.|+++|.+.+|+.|..||+.
T Consensus 76 ~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 76 DPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLES 112 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence 8999999999999999999999999999999999985
No 56
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.72 E-value=1.6e-17 Score=157.67 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=88.8
Q ss_pred eEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH--CCCCCCCCCCCCcccCC--
Q 004913 47 SYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA--FPKKNIPPAPPKGLLRM-- 122 (724)
Q Consensus 47 Sy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~--fP~~~LPpLPPKk~fg~-- 122 (724)
+..|.|+..... +..|.|.|+..+..|......+.|.||||||.|||..|..+ |+++.+||+|+|..++.
T Consensus 2 ~l~v~isD~~~~------~d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~ 75 (141)
T cd07292 2 ALQVDISDALSE------RDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASR 75 (141)
T ss_pred ceEEEccccccc------CCceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchH
Confidence 356777776642 22499999998888877778999999999999999999965 89999999999986631
Q ss_pred ------------CC-HHHHH--------------HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 123 ------------KS-RALLE--------------ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 123 ------------~s-~eFLE--------------ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
.. ..|.. +|+.+||.||++|++||.|+++..|+.||+-
T Consensus 76 ~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 76 EKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 11 24442 7789999999999999999999999999984
No 57
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.71 E-value=5.4e-17 Score=148.65 Aligned_cols=104 Identities=21% Similarity=0.414 Sum_probs=88.3
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCC-CCHHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRM-KSRALL 128 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~-~s~eFL 128 (724)
|+|-++... .+.++|.+|.|.|...++ ...|.|+|||+||.+||.+|++.||...+|+||+|+++++ +++.+.
T Consensus 4 v~v~~~~kr---~~~~~~yvY~I~V~~~~~---~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~ 77 (111)
T cd06884 4 VTVVGFQKR---YDPEKYYVYVVEVTRENQ---ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVA 77 (111)
T ss_pred EEEEEEEEE---ecCCCeEEEEEEEEEcCC---CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHH
Confidence 455555432 245789999999954443 3689999999999999999999999988999999987764 568999
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCCCHHHhhccC
Q 004913 129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLE 159 (724)
Q Consensus 129 EERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLE 159 (724)
|+|+.+||.||+.|++. |.|++|+.|.+|+.
T Consensus 78 e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 78 EKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 99999999999999985 89999999999985
No 58
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.2e-14 Score=155.84 Aligned_cols=116 Identities=25% Similarity=0.343 Sum_probs=99.0
Q ss_pred ceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----
Q 004913 46 WSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---- 121 (724)
Q Consensus 46 wSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---- 121 (724)
+..+|.++.... .-..+.+.|+.|.|.+.+..|......+.|.||||||++||..|...||++.+||+|+|....
T Consensus 108 ~~~~i~~~~~~~-~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~ 186 (503)
T KOG2273|consen 108 LDLSITVSDPEP-EIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSG 186 (503)
T ss_pred hheeeecCCCcc-ccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhcccc
Confidence 444566665551 222367789999999988877766678999999999999999999999999999999997433
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
.++++|+++||.+|+.||++++.||.|.+++.|+.||+.+.
T Consensus 187 ~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 187 DSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 46789999999999999999999999999999999999884
No 59
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9e-17 Score=173.98 Aligned_cols=126 Identities=22% Similarity=0.313 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEc
Q 004913 11 RHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLR 90 (724)
Q Consensus 11 r~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~R 90 (724)
.|.++.+ |.|..|.++|+++ .|.|-+....++.+|.++|+.|.+.=+. +...|.|
T Consensus 167 ~~~i~~~-~~g~qw~~~~~~~-----------------~c~v~~p~k~sk~kg~ks~i~y~ltpt~-------t~~~v~r 221 (490)
T KOG2528|consen 167 KVLIMVG-DRGPQWQANPSPF-----------------RCVVDDPKKESKFKGLKSYIAYQLTPTH-------TNISVSR 221 (490)
T ss_pred cceeecC-CCCcccccCCCCe-----------------eEEecCcccccccccchheeEeeecccc-------cCcchhh
Confidence 4455566 8999999999966 5667777777778899999999996522 2344999
Q ss_pred cchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 91 RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 91 RYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
||..|.|||.+|..+||.+.+|+||.|.+.+++..+||++||.+|+.|++++|+||+|++|+.|+.||.-.
T Consensus 222 rykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 222 RYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred cccccHHHHHHHHhhcccccCCCCCccccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876
No 60
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.67 E-value=3.1e-16 Score=148.94 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=86.1
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------------------
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--------------------- 107 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--------------------- 107 (724)
.|.|+++.-.........|++|.|+|.. + ...|.|.|||+||.+||..|+..++
T Consensus 5 ~a~I~~~er~~~~~~~~~~~~Y~Iev~~--g---~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~ 79 (140)
T cd06895 5 KARITDVERSGTTRHLLNPNLYTIELQH--G---QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRS 79 (140)
T ss_pred EEEEeEEeccCCCCCCCceEEEEEEEEE--C---CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccc
Confidence 6788888643221125678999999943 2 3699999999999999999998732
Q ss_pred --------CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 108 --------KKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 108 --------~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
...+|+||.|..++ ..++++++||.+||.||+.|+.+|.+.++..+.+||+.
T Consensus 80 ~~~~~~~~~~~lP~lP~~~~~~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 80 RKPEREKKNRRLPSLPALPDIL-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred cccccccccccCCCCCCccccc-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 23578888777554 37899999999999999999999999999999999986
No 61
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.66 E-value=5.4e-16 Score=141.34 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=87.1
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCCCccc
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPPKGLL 120 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPPKk~f 120 (724)
.++|+++... +.+.+|.|.|...+ +..|.|+|||+||.+||.+|...||. ..+|+||++...
T Consensus 2 ~~~V~~~~~~------~~~y~Y~i~v~~s~----~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~ 71 (112)
T cd06890 2 SASVESVLLE------DNRYWYRVRATLSD----GKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD 71 (112)
T ss_pred eEEEEEEEEE------CCEEEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC
Confidence 5788888763 34789999997655 47999999999999999999999993 358989877544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913 121 RMKSRALLEERRCSLEEWMTKLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 121 g~~s~eFLEERR~gLEkYLqrLLshP-~Ls~S~~L~sFLEl 160 (724)
. .+.+++++||.+|+.||+.|+.+| .+++|+.|+.||..
T Consensus 72 ~-~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 72 V-VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred c-chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 3 567999999999999999999999 99999999999964
No 62
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.64 E-value=1.3e-15 Score=139.79 Aligned_cols=104 Identities=21% Similarity=0.379 Sum_probs=86.1
Q ss_pred EEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHH
Q 004913 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALL 128 (724)
Q Consensus 50 VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eFL 128 (724)
|+|+++.....+ +.|.+|.|.|...+. ....| |+|||++|..||.+|++.||...+|+||+|.++|+.. ++..
T Consensus 2 ~~V~~f~Kr~~p---~k~yvY~i~V~~~~~--~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~va 75 (109)
T cd07289 2 VSVFTYHKRYNP---DKHYIYVVRILREGQ--IEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVA 75 (109)
T ss_pred cEEeeEEEEEcC---CCeEEEEEEEEECCC--ceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHH
Confidence 688898754332 345699999965432 11255 9999999999999999999988899999998887653 7999
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCCCHHHhhccC
Q 004913 129 EERRCSLEEWMTKLLSD-IDLSRSVSVASFLE 159 (724)
Q Consensus 129 EERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLE 159 (724)
|+|+.+|+.||+.|++- |.+++|+.|.+|+.
T Consensus 76 e~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 76 AKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 99999999999999965 57999999999985
No 63
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.63 E-value=1.6e-15 Score=140.63 Aligned_cols=92 Identities=27% Similarity=0.419 Sum_probs=80.9
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCCHHHHHHHHHH
Q 004913 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKSRALLEERRCS 134 (724)
Q Consensus 64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~s~eFLEERR~g 134 (724)
.++|.+|.|.|...+ ...|.|+||||||..||.+|+..||. ..+|+||+|.++++. ++.|+||.+
T Consensus 15 ~~~~y~Y~i~v~~s~----~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~--~v~e~Rr~~ 88 (118)
T cd06887 15 PSQHYVYMFLVKWQD----LSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ--RAAENRQGT 88 (118)
T ss_pred CCCcEEEEEEEEEcC----CcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc--hHHHHHHHH
Confidence 467999999996544 36899999999999999999999995 679999999887764 999999999
Q ss_pred HHHHHHHHhc-ccCCCCCHHHhhccCcc
Q 004913 135 LEEWMTKLLS-DIDLSRSVSVASFLELE 161 (724)
Q Consensus 135 LEkYLqrLLs-hP~Ls~S~~L~sFLElE 161 (724)
|+.||+.|+. .+.+++|+.|..||...
T Consensus 89 L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 89 LTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred HHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 9999999975 56899999999999753
No 64
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.59 E-value=6.8e-15 Score=136.52 Aligned_cols=92 Identities=25% Similarity=0.382 Sum_probs=79.8
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCCC-HHHHHHHHHH
Q 004913 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMKS-RALLEERRCS 134 (724)
Q Consensus 65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~s-~eFLEERR~g 134 (724)
..|.+|.|.|...++ ..|.|+||||||..||.+|+..||. +.+|.||+|.++++.. .++.++|+..
T Consensus 16 ~k~y~Y~i~V~~~dg----~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~~~e~R~~~ 91 (119)
T cd06888 16 SKHYVYIINVTWSDG----SSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRDVAVKRLKP 91 (119)
T ss_pred CCcEEEEEEEEEcCC----CEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHHHHHHHHHH
Confidence 456699999976543 5799999999999999999999995 2599999999888654 6799999999
Q ss_pred HHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913 135 LEEWMTKLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 135 LEkYLqrLLshP-~Ls~S~~L~sFLEl 160 (724)
|+.||+.|++.| .|++|+.|..|++.
T Consensus 92 L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 92 IDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 999999999886 57899999999863
No 65
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.58 E-value=8.9e-15 Score=134.28 Aligned_cols=92 Identities=22% Similarity=0.361 Sum_probs=79.5
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCC-HHHHHHHHHHHHHHHHHHh
Q 004913 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKS-RALLEERRCSLEEWMTKLL 143 (724)
Q Consensus 65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s-~eFLEERR~gLEkYLqrLL 143 (724)
+.|.+|.|.|...+. ...|.|.|||+||..||.+|++.||...+|+||+|.++++.+ ++..|+|+.+|+.||+.|+
T Consensus 14 ~k~y~Y~I~V~~~~~---~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll 90 (109)
T cd07290 14 SKGYAYVVKVQREGH---KEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLI 90 (109)
T ss_pred CCcEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHHH
Confidence 345669999965432 345999999999999999999999988899999999888755 7999999999999997755
Q ss_pred -cccCCCCCHHHhhccC
Q 004913 144 -SDIDLSRSVSVASFLE 159 (724)
Q Consensus 144 -shP~Ls~S~~L~sFLE 159 (724)
..|.|++|+.|.+|+.
T Consensus 91 ~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 91 HAPPEVAECDLVYTFFH 107 (109)
T ss_pred cCChheecCHHHHHhcc
Confidence 6778999999999985
No 66
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.48 E-value=1.8e-13 Score=129.82 Aligned_cols=91 Identities=22% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcc-----------------cCCC-CH
Q 004913 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGL-----------------LRMK-SR 125 (724)
Q Consensus 64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~-----------------fg~~-s~ 125 (724)
...|++|+|.|.. + ...|+|.|||+||..||..|.. |+...-.|||+|.+ +... +.
T Consensus 22 ~~~~t~Y~I~v~~--g---~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~ 95 (135)
T cd07296 22 KPSLNVYTIELTH--G---EFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEE 95 (135)
T ss_pred ccceEEEEEEEEe--C---CEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCc
Confidence 4579999999943 3 3699999999999999999997 55432235778765 2211 11
Q ss_pred HHHH----HHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 126 ALLE----ERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 126 eFLE----ERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
...| +||.+||.||++|+..|..+++.++.+||+.
T Consensus 96 ~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 96 EAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred cccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 2444 8999999999999999999999999999985
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=6.3e-12 Score=133.25 Aligned_cols=109 Identities=27% Similarity=0.392 Sum_probs=86.2
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHH
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALL 128 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFL 128 (724)
.+..|.+.- +...+.|++|.|+|+.. ...|.|.|||+||..||++|..+.. ..---||||++.|++++.|+
T Consensus 12 ~~~~~~~~~---~~~~~~~t~y~i~v~~g-----~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig~~~~s~~ 82 (490)
T KOG1259|consen 12 TVTVPKFSN---ESSSGGVTYYDIKVRVG-----KVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVGNKQPSFL 82 (490)
T ss_pred ccccccccc---ccccCceEEEEEEEEec-----ceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcCCCChhHH
Confidence 455555542 22457899999999643 3699999999999999999987654 12224789999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhh
Q 004913 129 EERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARS 166 (724)
Q Consensus 129 EERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs 166 (724)
|+||..||-|||.++.-..---..++.+||.+..+--.
T Consensus 83 e~r~~~leiylq~ll~~f~~~~pr~la~fl~f~~y~i~ 120 (490)
T KOG1259|consen 83 EQRREQLEIYLQELLIYFRTELPRALAEFLDFNKYDII 120 (490)
T ss_pred HHHHHHHHHHHHHHHHHccccCHHHHHHHhccchHHHH
Confidence 99999999999999976655567789999988765544
No 68
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.26 E-value=1e-11 Score=139.20 Aligned_cols=103 Identities=27% Similarity=0.306 Sum_probs=85.5
Q ss_pred EEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcce---EEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----
Q 004913 49 CVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTR---GVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR---- 121 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w---~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg---- 121 (724)
.|++|...... ....+.|+.|.|.-....|.+..... .|.||||||.+||..|...||.+.+||+|+|.+++
T Consensus 134 ~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~ 212 (524)
T COG5391 134 TVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYG 212 (524)
T ss_pred ccccchhcccc-cccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccc
Confidence 45555554433 22456899999988766666554444 99999999999999999999999999999998763
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 004913 122 -MKSRALLEERRCSLEEWMTKLLSDIDLSRSV 152 (724)
Q Consensus 122 -~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~ 152 (724)
++++.|+++|+.+|+.||+.++.||.+.++.
T Consensus 213 ~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 213 DRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 7789999999999999999999999999876
No 69
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.16 E-value=1.7e-10 Score=108.02 Aligned_cols=92 Identities=26% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCCC--CHHHHHHHHH
Q 004913 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRMK--SRALLEERRC 133 (724)
Q Consensus 65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~~--s~eFLEERR~ 133 (724)
..+-+|.|.|...+ +..|.|+|||+||..||.+|+..||. +.+|.||.|.++++. ..+.=++|+.
T Consensus 17 ~~h~~Y~i~V~wsd----gs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~~ 92 (121)
T cd06889 17 RRHKTYMFSVLWSD----GSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKGSTSRSLARLK 92 (121)
T ss_pred cceeEEEEEEEEcC----CcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCcccccchHHHHHH
Confidence 34669999997664 36899999999999999999999993 469999999888764 3335679999
Q ss_pred HHHHHHHHHhccc-CCCCCHHHhhccCc
Q 004913 134 SLEEWMTKLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 134 gLEkYLqrLLshP-~Ls~S~~L~sFLEl 160 (724)
.|+.|++.|++-| .|++|+.|..|+..
T Consensus 93 ~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 93 LLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 9999999999765 69999999999864
No 70
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.07 E-value=4.8e-10 Score=101.95 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=74.3
Q ss_pred EEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcc-cC
Q 004913 69 FYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSD-ID 147 (724)
Q Consensus 69 vY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLsh-P~ 147 (724)
.|.|+|.-+++ ..-.|.|+|.+|..||++|++.||...+|.+|.++..+..+.+ .+|.+.|+.||+.|++- |.
T Consensus 14 lY~i~V~~sd~----~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~~--~~R~~~L~~Yl~~Ll~~~~e 87 (101)
T cd06896 14 LYLVQVTQSCN----LVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDSD--HKRVRDLNHYLEQLLSGSRE 87 (101)
T ss_pred EEEEEEEEeCC----CcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccHH--HHHHHHHHHHHHHHHccCHH
Confidence 69999966543 5678999999999999999999999999999999866665543 67999999999999965 68
Q ss_pred CCCCHHHhhccCc
Q 004913 148 LSRSVSVASFLEL 160 (724)
Q Consensus 148 Ls~S~~L~sFLEl 160 (724)
+++|+.|.+|+..
T Consensus 88 Va~sd~v~sFF~~ 100 (101)
T cd06896 88 VANSDCVLSFFLS 100 (101)
T ss_pred HhcchHHHHHhhc
Confidence 9999999999853
No 71
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.1e-09 Score=118.66 Aligned_cols=88 Identities=27% Similarity=0.460 Sum_probs=80.4
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL 142 (724)
+...|++|+|++ ....++.+|||.|..||..|++.|.+..+|++|||+.|.. .+.-+++||.+||+||+.+
T Consensus 13 ~~~~ytaynih~--------nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L-~~~~~~~rr~~leqylqa~ 83 (407)
T KOG3784|consen 13 SLERYTAYNIHI--------NGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKL-TPQQLDSRRRGLEQYLQAV 83 (407)
T ss_pred Ccccccceeeee--------cceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCC-ChhhhHHHHHHHHHHHHHH
Confidence 456799999999 3577899999999999999999999899999999998865 4599999999999999999
Q ss_pred hcccCCCCCHHHhhccC
Q 004913 143 LSDIDLSRSVSVASFLE 159 (724)
Q Consensus 143 LshP~Ls~S~~L~sFLE 159 (724)
+++|.++.+..+..||.
T Consensus 84 ~q~~~l~~s~~~~~fL~ 100 (407)
T KOG3784|consen 84 CQDPVLARSELVQKFLM 100 (407)
T ss_pred hcCccccchhhhhHHHH
Confidence 99999999999999994
No 72
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.69 E-value=7.6e-08 Score=91.22 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=72.0
Q ss_pred EEEecceEEccCCCCCCCe--EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCC----------------
Q 004913 49 CVTIPSWVVLPKSRDSDPV--VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN---------------- 110 (724)
Q Consensus 49 ~VsIPS~~~v~~s~~sk~y--VvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~---------------- 110 (724)
.|.|-....... +++.+ .+|+|.++ .+ .-.|.|.|||.+|..||..|...--...
T Consensus 5 ~~~V~~~er~~s--~s~~~~~~lYtIelt--HG---~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~ 77 (130)
T cd07297 5 TAKVENTERYTT--GSKVHVCTLYTVRLT--HG---EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLE 77 (130)
T ss_pred EEEEEEEEEeec--ccccccceeEEEEEe--cC---ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccc
Confidence 455555544322 23333 69999993 33 2599999999999999999986321122
Q ss_pred -----CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCc
Q 004913 111 -----IPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLEL 160 (724)
Q Consensus 111 -----LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLEl 160 (724)
+|.||...-. - .+-+..|++.||.||++|+..|.-.+..+..+||+.
T Consensus 78 ~~~~~mP~LP~~~~~--~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 78 GLTEEMPSLPGTDRE--A-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred cccCcCCCCCCCCch--h-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 3444433211 1 255788999999999999999999999999999985
No 73
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=1.2e-06 Score=93.64 Aligned_cols=93 Identities=28% Similarity=0.319 Sum_probs=74.4
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-CCC--CCCCCC----CCcccCCCCHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-PKK--NIPPAP----PKGLLRMKSRALLEERRCSL 135 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~f-P~~--~LPpLP----PKk~fg~~s~eFLEERR~gL 135 (724)
....|++|.|.|.+.........|.|+|||+||..||..|++.| |.. ..|..| .+.++++++..++.+|+.++
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 210 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEAL 210 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhH
Confidence 56789999999976654323357999999999999999999999 653 334444 23467788899999999999
Q ss_pred HHHH--HHHhcccCCCCCHHHh
Q 004913 136 EEWM--TKLLSDIDLSRSVSVA 155 (724)
Q Consensus 136 EkYL--qrLLshP~Ls~S~~L~ 155 (724)
+.|| +....++.+.++..+.
T Consensus 211 ~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 211 EEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred HHHHHhhhhhccccccchHHhh
Confidence 9999 8888888888877665
No 74
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.79 E-value=7e-05 Score=90.09 Aligned_cols=114 Identities=20% Similarity=0.329 Sum_probs=92.5
Q ss_pred CCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 004913 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (724)
Q Consensus 42 ~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg 121 (724)
.++|.+-.|+|-.+..--. ...+..|.|+|+-.+. ...-.+.|-|-+|.+||.+|+..||...+|.+|-.+..+
T Consensus 1370 ~sdgRi~~v~v~~f~K~~~---pnK~YmYvveV~r~n~---~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g 1443 (1639)
T KOG0905|consen 1370 NSDGRISEVTVLKFEKHYS---PNKIYMYVVEVTRENQ---AEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG 1443 (1639)
T ss_pred ccCCceEEEEEEEeeeecc---CCceEEEEEEEEecCC---CCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec
Confidence 6678888898888875322 2446689999954332 345679999999999999999999999999999887666
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcc
Q 004913 122 MKS-RALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELE 161 (724)
Q Consensus 122 ~~s-~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElE 161 (724)
+.+ .+.-++|+..|+.||..|..- +++++|..|.+|+-..
T Consensus 1444 rsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1444 RSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 544 789999999999999999965 5799999999998544
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.68 E-value=0.006 Score=69.96 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=131.2
Q ss_pred HHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHHHHHHhhHh----hhhhhhcHHHHHHH
Q 004913 407 RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQAILSERER----LTQMQWDMEELRQK 479 (724)
Q Consensus 407 ~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQa~l~ErEr----~t~mqwdmeelr~k 479 (724)
.||....++|++...+..+-.+--+.|-..++.++..|..++|+. ++.|--|+.. |.| +-+..|++++|+.+
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~-RDrt~aeLh~aRLe~aql~~q 340 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNV-RDRTMAELHQARLEAAQLKLQ 340 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHH
Confidence 566666666666665555555555677777888888888887654 3444444444 433 34557899999999
Q ss_pred HHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh---hcccchhHHHHHHHHHhhhhHH
Q 004913 480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA---KSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa---kskad~KvLvKEVKsLR~s~~~ 555 (724)
+.+....|+.. +....+|++ +.+.....++.++.|+.+...++- ..+++.-.|.+++...+.+..-
T Consensus 341 Lad~~l~lke~----------~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v 410 (546)
T PF07888_consen 341 LADASLELKEG----------RSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV 410 (546)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99888887654 245566666 666677777888888877766554 3467778999999999888865
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 556 LKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 556 lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
.=.|..+-+.|+...-+++|.||+.. ..=+..|++.++.|+.||.--
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql---~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQL---QEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 55666677777777778999999443 234678999999999999854
No 76
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.61 E-value=0.0076 Score=64.98 Aligned_cols=202 Identities=22% Similarity=0.319 Sum_probs=114.6
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh-hhhhhhcHHHHHHH
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERER-LTQMQWDMEELRQK 479 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr-~t~mqwdmeelr~k 479 (724)
|-+||=+||..+|-+.|+|+-.+-||+ +||| ++|.--|...++. |-.|+++.-.|.|. |..++=-++.|+++
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EE---E~lt---n~L~rkl~qLr~E-K~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEE---EFLT---NDLSRKLNQLRQE-KVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776666654 4444 4444555544443 33677777777776 45544444445444
Q ss_pred HHHHHHHhccccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHHHH---------------Hh----hhcccc
Q 004913 480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRYEE---------------LE----AKSKAD 538 (724)
Q Consensus 480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~~e---------------lE----akskad 538 (724)
...+...|.-...+|...|.+++.-.+-.= |-++|+.....-..|+.+++. .. .+.-+.
T Consensus 151 ~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~sh 230 (310)
T PF09755_consen 151 KSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSH 230 (310)
T ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHH
Confidence 444444444444444444443332111111 333333333333334433331 00 223345
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHhhhcccccccccC
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHE---CRILLNRFQACNANLYAEEED 615 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhe---c~iL~~rLqEC~~~~~~ee~~ 615 (724)
++.|..||..||.++...+++ ........++.|++..+.-...++||.+| |..|+..|-|.-..+=++++-
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e------~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEsslE~ddEr 304 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQE------HSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSLEMDDER 304 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence 667778888888776644443 34456677888888888777888888766 678998888876666555544
No 77
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.55 E-value=0.009 Score=71.06 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=17.3
Q ss_pred chHHHHHHH---HHHHHhhHHHHHHHHHHHHHHhh
Q 004913 672 TDNELREVI---ADILVDNAKLRKQVNSVLRRALL 703 (724)
Q Consensus 672 ~d~elrk~l---ad~~idna~LRkq~Nsv~r~al~ 703 (724)
.+.++++.+ .+.|.. ....+|.+.+..+.
T Consensus 1019 i~~~~~~~f~~~~~~F~~---v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168 1019 LEEAIEEIDREARERFKD---TFDQVNENFQRVFP 1050 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 556666666 666643 45566666666554
No 78
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.47 E-value=0.0004 Score=65.04 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred CeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHH-----CCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 004913 66 PVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKA-----FPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (724)
Q Consensus 66 ~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~-----fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLq 140 (724)
+-++|.|+|.++ ++.|.|.|+|-||.-|.+.|... |.. ++.||++..... .+++++ ..|.+||.
T Consensus 26 ~e~~~~v~v~Cq-----grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l~~-~~~~v~---~~l~~YL~ 94 (115)
T cd07298 26 KELVYLVQIACQ-----GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSLKD-SPESVT---QMLMAYLS 94 (115)
T ss_pred CCeEEEEEEEeC-----CCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCcccccc-cHHHHH---HHHHHHHH
Confidence 347999999775 36999999999999999999887 544 788998764433 357774 48999999
Q ss_pred HHhccc-CCCCCHHHhhccCc
Q 004913 141 KLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 141 rLLshP-~Ls~S~~L~sFLEl 160 (724)
++-..- ..-+|.++..||++
T Consensus 95 RlS~Ia~~~~nCGPvLtWlei 115 (115)
T cd07298 95 RLSAIAGNKINCGPALTWMEI 115 (115)
T ss_pred HHHHHhhCCccchhcceeeeC
Confidence 887653 34578888888864
No 79
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.06 Score=66.63 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=14.3
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.+.+..+.|.+..+..+..+.+..+...
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1163)
T COG1196 778 KEEIEELEEKRQALQEELEELEEELEEA 805 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544443
No 80
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.27 E-value=0.043 Score=65.43 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=13.1
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.+..++..+++++.+..+.+..+...
T Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 808 (1179)
T TIGR02168 783 EIEELEAQIEQLKEELKALREALDEL 808 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444433
No 81
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.25 E-value=0.045 Score=65.71 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 004913 672 TDNELREVIAD 682 (724)
Q Consensus 672 ~d~elrk~lad 682 (724)
+++++++.+--
T Consensus 608 ~~~~~~~~~~~ 618 (1164)
T TIGR02169 608 FDPKYEPAFKY 618 (1164)
T ss_pred CcHHHHHHHHH
Confidence 45555555443
No 82
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.02 E-value=0.062 Score=61.97 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=31.3
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhH--------------HHHHHhhhhhhHHHHHHHHHhhHH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTV--------------KDYLMTKVKDLEVELETTKQKSKE 453 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~av--------------k~fL~tKvkDlE~eLe~t~~~~ke 453 (724)
.+|..-+..|++-|.+.+..|+.|-...-.-... ..=+..+++.||.++.+..++.++
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666555432211111 122456777788777777777643
No 83
>PRK02224 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.48 Score=56.51 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE 577 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E 577 (724)
.+-++++.|.....+++++++...++..+++.-|...
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~ 382 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDR 382 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 84
>PRK02224 chromosome segregation protein; Provisional
Probab=96.83 E-value=0.29 Score=58.28 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=76.8
Q ss_pred ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhh
Q 004913 392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW 471 (724)
Q Consensus 392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqw 471 (724)
...+.+|......++.++...++.+..+-+.|..-....+-+..++++||.++......-.+ +.+.+-.=+..+...+=
T Consensus 306 ~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~ 384 (880)
T PRK02224 306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRRE 384 (880)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666655555577777888888888665533332 22222222444555555
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
+++.++.++.+.+..|.....+....+.....+..+.+ +.+++...+..+..+.+-.++++
T Consensus 385 ~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655555433322333344444555555 55555555555555554444444
No 85
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.74 E-value=0.0092 Score=56.04 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 004913 64 SDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMT 140 (724)
Q Consensus 64 sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLq 140 (724)
....++|.|+|.++. ..|.|.|.|-||.-|.+.|....-. -.++.||+--.. ...++-++ ..|.+||.
T Consensus 23 ~~k~~~~~v~V~cqg-----~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~-~~~~~~~~---~~l~~YL~ 93 (114)
T cd07278 23 SGKELVYLVQVQCQG-----KSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE-KREQQNLH---QVLSDYLK 93 (114)
T ss_pred CCCceEEEEEEEeCC-----cceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc-cchHHHHH---HHHHHHHH
Confidence 345689999997653 6999999999999999999875321 146677764322 12334454 48999999
Q ss_pred HHhccc-CCCCCHHHhhccCc
Q 004913 141 KLLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 141 rLLshP-~Ls~S~~L~sFLEl 160 (724)
++-..- ..-+|.++..||++
T Consensus 94 RlS~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 94 RLSSIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred HHHHHhcCcccchhcceeeeC
Confidence 987654 35678888888875
No 86
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.64 E-value=0.006 Score=57.13 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q 004913 65 DPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTK 141 (724)
Q Consensus 65 k~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqr 141 (724)
...++|.|+|.++ ++.|.|.|.|-||.-|.+.|....-. -.+++|||---.+ ...+.+ ...|.+||.+
T Consensus 23 ~k~~~flv~V~cq-----grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~-~~~~~~---~~~l~~YL~R 93 (113)
T cd07299 23 EKDLVFLVQVTCQ-----GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIG-DRLQIL---TPLLSEYLNR 93 (113)
T ss_pred CCceEEEEEEEec-----CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCcccccc-chHHHH---HHHHHHHHHH
Confidence 3468999999765 36999999999999999999875321 1356666552111 122334 4589999999
Q ss_pred Hhccc-CCCCCHHHhhccCc
Q 004913 142 LLSDI-DLSRSVSVASFLEL 160 (724)
Q Consensus 142 LLshP-~Ls~S~~L~sFLEl 160 (724)
+-..- ..-+|.+|..||++
T Consensus 94 lS~Ia~~~inCGPVLtWmeI 113 (113)
T cd07299 94 LTGIVDSNLNCGPVLTWMEI 113 (113)
T ss_pred HHHHhcCCccccccceeeeC
Confidence 87653 34578888888874
No 87
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=96.53 E-value=0.0032 Score=68.62 Aligned_cols=88 Identities=24% Similarity=0.279 Sum_probs=73.6
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC---------CCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Q 004913 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP---------KKNIPPAPPKGLLRMKSRALLEERRCSLEE 137 (724)
Q Consensus 67 yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP---------~~~LPpLPPKk~fg~~s~eFLEERR~gLEk 137 (724)
+.||.|.|.... .....|+|||.+|..++..|...|+ .+.+|+||.+..|+.. ++--|+|...|..
T Consensus 38 hFvyVievkw~~----~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfk-qe~Ae~r~~~ln~ 112 (386)
T KOG4773|consen 38 HFVYVIEVKWYG----GSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFK-QEIAEERIPALNA 112 (386)
T ss_pred heEEEEEehhhc----cccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechh-hhhhhhhhHHHHH
Confidence 779999885443 2478899999999999999999997 2578999999877654 4888999999999
Q ss_pred HHHHHhcccC-CCCCHHHhhccC
Q 004913 138 WMTKLLSDID-LSRSVSVASFLE 159 (724)
Q Consensus 138 YLqrLLshP~-Ls~S~~L~sFLE 159 (724)
|..-|++-|. +..++.|..|.-
T Consensus 113 y~e~LlslPi~~l~~p~l~~fff 135 (386)
T KOG4773|consen 113 YCEWLLSLPIGRLGGPGLRPFFF 135 (386)
T ss_pred HHHHHHhcchhhcCCCCceeeee
Confidence 9999999996 457888888874
No 88
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.53 E-value=1 Score=54.39 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=118.1
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH-------HhhHHHHHHHH-------------H
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK-------QKSKETLQQAI-------------L 460 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~-------~~~ke~lqQa~-------------l 460 (724)
=+..|+.|+.++.+|.+.++.=|-.+-..-.|+-.|+.-++.+|.... .+......|.. -
T Consensus 253 Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 253 EIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355677788888888888877776666667777777777777776655 22222222222 2
Q ss_pred HhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913 461 SERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI 539 (724)
Q Consensus 461 ~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~ 539 (724)
.=..+-+.+|=|+|.||.++-+.+..+.-.+.--......+.....|.. +...+++..-.+..|+++++.||-+.+-.-
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556789999999999999888887665555555566677777777 778888888888899999988888887666
Q ss_pred hHHHHHHHHHhh-----hhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004913 540 KVLVKEVKFLRS-----SQIGLKQELSQMLNEKSKTEELLQQE 577 (724)
Q Consensus 540 KvLvKEVKsLR~-----s~~~lk~el~~~~~eK~e~E~~l~~E 577 (724)
+.|..+.-.|++ .-..+.-.|..++.+|.-+-.-|.+.
T Consensus 413 ~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~ 455 (775)
T PF10174_consen 413 RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQ 455 (775)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777767772 11233344555555554444444333
No 89
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=96.41 E-value=0.0044 Score=67.59 Aligned_cols=93 Identities=23% Similarity=0.372 Sum_probs=72.3
Q ss_pred EEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC---------------CCCHHHH--
Q 004913 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR---------------MKSRALL-- 128 (724)
Q Consensus 68 VvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg---------------~~s~eFL-- 128 (724)
|-|+|++.+..|.+. ....|.|---+|+|||..+.. .|-+..+||.||+.-|- +.-.+|+
T Consensus 40 vK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~Km 118 (399)
T KOG1660|consen 40 VKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKM 118 (399)
T ss_pred ceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHH
Confidence 679999988888776 888999999999999988864 46678899999986441 1112333
Q ss_pred ---------HHHH---HHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 129 ---------EERR---CSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 129 ---------EERR---~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
+.=+ ..=|.||++|++||+++.+.-|.-||+.+
T Consensus 119 K~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 119 KQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD 163 (399)
T ss_pred HHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence 3222 23467999999999999999999999987
No 90
>PRK11637 AmiB activator; Provisional
Probab=96.41 E-value=0.74 Score=51.11 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLS 525 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~ 525 (724)
+++++...+++++...
T Consensus 171 ~l~~l~~~~~~L~~~k 186 (428)
T PRK11637 171 TIAELKQTREELAAQK 186 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.37 E-value=1 Score=56.84 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=33.8
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHH-------HHHHHHHHHHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDAT-------KEQLENLSKRYEEL 531 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~-------~~~~e~l~k~~~el 531 (724)
+.+.=++.++++++.+.+..++...... +...+..+.+ +..+++.+ +++.+.++++..+|
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~-----s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDR-----TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777888888888888888654422 2333344333 33344444 44455545555555
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.17 E-value=1.3 Score=55.30 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=40.3
Q ss_pred HhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 531 LEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 531 lEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
+|++-.-.+|.+-.|++-+++.+..+ +|...-.+..+++.-|..||--++.+.+-+.++-.||+.|++=+
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~ 737 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY 737 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333444444444444444444444 44444555666666667777666677777777777777776533
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.14 E-value=0.83 Score=57.19 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=53.9
Q ss_pred hcchHHHHHHhhhhhhHH----------HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 413 KTDMEDLITRLNQEMTVK----------DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 413 ktdmEDLiaRLnqe~avk----------~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
+.|+|++++|++++..++ +-|+.|+.|+|...+.-+++-+...+...-.-+++....+=...+++.+..+
T Consensus 341 ~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 420 (1201)
T PF12128_consen 341 DADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEE 420 (1201)
T ss_pred HCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999887665 4789999999999999888877777665555455555554444455555544
Q ss_pred HHHHhccc
Q 004913 483 MEWKLKSK 490 (724)
Q Consensus 483 ~E~~lks~ 490 (724)
-...+...
T Consensus 421 ~~~~l~~~ 428 (1201)
T PF12128_consen 421 EYQALEQE 428 (1201)
T ss_pred HHHHHHHH
Confidence 44444433
No 94
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.14 E-value=0.63 Score=57.95 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccC
Q 004913 673 DNELREVIADILVDNAKLRKQVNSVLRRALLFRNN 707 (724)
Q Consensus 673 d~elrk~lad~~idna~LRkq~Nsv~r~al~~~~~ 707 (724)
+.+.+..|-+.|- ...++++.+....+..+++
T Consensus 1004 d~~~~~~f~~~f~---~In~~F~~if~~L~~GG~a 1035 (1163)
T COG1196 1004 DKEKRERFKETFD---KINENFSEIFKELFGGGTA 1035 (1163)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCee
Confidence 3344444444443 2334444455444443333
No 95
>PRK11637 AmiB activator; Provisional
Probab=95.97 E-value=1.2 Score=49.41 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=10.1
Q ss_pred HhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 549 LRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 549 LR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
|++...+..+++.+.-.+...+++.|.
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 96
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.89 E-value=3.4 Score=53.81 Aligned_cols=295 Identities=22% Similarity=0.255 Sum_probs=169.5
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHH------------HHHHh--
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ------------AILSE-- 462 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQ------------a~l~E-- 462 (724)
.+++=|...+.++.+++-++.-+++=|-......+-|..||.+|+..|+-++.... +|.+ ++-+|
T Consensus 834 ~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~-~l~~~~~~~d~~~~~~~Lr~~~e 912 (1822)
T KOG4674|consen 834 SLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLL-NLDSKSSNEDATILEDTLRKELE 912 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hccccchhhhhhhhhHHHHHHHH
Confidence 34455667777777778888888888877778888899999999999987765432 2221 22222
Q ss_pred -----hHhhhhhhhcHHHHHHHHHHHHHHhccc---cCC-CCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 463 -----RERLTQMQWDMEELRQKSLEMEWKLKSK---QDG-NPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 463 -----rEr~t~mqwdmeelr~k~~e~E~~lks~---~~~-~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
++.+|-=+=.|.++-..++-+|..|++. -++ +.-.+........+.- +.+++-..+.+.++|..+. ++.
T Consensus 913 q~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-~~~ 991 (1822)
T KOG4674|consen 913 EITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL-ELS 991 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 3455555566667777777777776655 111 1111111111111111 5556666666666666555 333
Q ss_pred hhcccc-hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 533 AKSKAD-IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER-------QTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 533 akskad-~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er-------~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
.+.+.+ .--+++|+++|++-...+.+-.+++...-..+..=|..+. -.-++...--..+..++.-|+..+-.
T Consensus 992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~ 1071 (1822)
T KOG4674|consen 992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAK 1071 (1822)
T ss_pred ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 5568899999999988888888888776665555544442 11122222223344455566666666
Q ss_pred hccccc---------ccccCceecccCChhhHHH-hhcccchhHHHHHHHHhhhhhhhhhhhhhhhh-cccCCCCCccch
Q 004913 605 CNANLY---------AEEEDNVILESSSAADALA-LLTSSDDQISLLITEAQLLAEDSKAAASADVE-KAHDNDVCTRTD 673 (724)
Q Consensus 605 C~~~~~---------~ee~~~~~~~~ss~~da~d-lL~tsDnrI~lLlaEaqll~~d~e~~~~~~~~-~~~~~~~~~~~d 673 (724)
|+-.+. -..-+.+.-+-+.-.+|++ .+.-+-.||.-|.++-++|-.--+..++..+. ..+.+..+ +
T Consensus 1072 ~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g---~ 1148 (1822)
T KOG4674|consen 1072 CNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG---L 1148 (1822)
T ss_pred HHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc---h
Confidence 664442 1111222233344455654 34556678888888888885554443222221 11122222 4
Q ss_pred HHHHHHHH--------------HHHHhhHHHHHHHHH
Q 004913 674 NELREVIA--------------DILVDNAKLRKQVNS 696 (724)
Q Consensus 674 ~elrk~la--------------d~~idna~LRkq~Ns 696 (724)
..|+.++. =++.||++|+-++=+
T Consensus 1149 sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~ 1185 (1822)
T KOG4674|consen 1149 SDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVAS 1185 (1822)
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45555543 257899999988766
No 97
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=5.1 Score=49.60 Aligned_cols=208 Identities=20% Similarity=0.235 Sum_probs=119.3
Q ss_pred cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHH----HHHHhh
Q 004913 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQ----AILSER 463 (724)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQ----a~l~Er 463 (724)
|+-+=|+|+-+-.-+ .+.+.|.++|=. +.+--+=...|-+||..+|+....+- +.+++| -+++++
T Consensus 672 ~L~~l~~l~~~~~~~----~~~q~el~~le~----eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~ 743 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKEL----RAIQKELEALER----ELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDL 743 (1174)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHH
Confidence 556677877664422 233334443322 22223335567777777776654432 222222 122222
Q ss_pred HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-----HHHHHHHHHHHHHHHH----HHHHHHhhh
Q 004913 464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-----VLQELDATKEQLENLS----KRYEELEAK 534 (724)
Q Consensus 464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-----~~qel~~~~~~~e~l~----k~~~elEak 534 (724)
+ .|-=+++|+.++.-+.+..++.+++.-...|..++....+.+ +..++..+++.++.-+ +++.++| .
T Consensus 744 ~---~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e-~ 819 (1174)
T KOG0933|consen 744 K---ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE-R 819 (1174)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2 344477778888888888888887766666665555544443 3334444444333222 2222222 2
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc--cccccc
Q 004913 535 SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN--ANLYAE 612 (724)
Q Consensus 535 skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~--~~~~~e 612 (724)
...+.-.|-+|++++..++.+++...+.+..+-.+++.-+.... --..+.+.|+....+++.+|+ ++.+.-
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~-------~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE-------KDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 34566677788888888877777777777766666666555433 556778888999999999999 444444
Q ss_pred ccCce
Q 004913 613 EEDNV 617 (724)
Q Consensus 613 e~~~~ 617 (724)
...++
T Consensus 893 ~~e~~ 897 (1174)
T KOG0933|consen 893 SQEKC 897 (1174)
T ss_pred HHHHH
Confidence 44444
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.82 E-value=0.11 Score=55.81 Aligned_cols=54 Identities=26% Similarity=0.212 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH
Q 004913 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK 452 (724)
Q Consensus 399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k 452 (724)
+-+...|+.++...+.|.+.|.+.+++--.+..=|..+-..|+.++...++...
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777888888888888888887777777777777777777776665544
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.79 E-value=0.26 Score=58.71 Aligned_cols=157 Identities=25% Similarity=0.302 Sum_probs=103.8
Q ss_pred hhhhH-HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhh
Q 004913 425 QEMTV-KDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES 503 (724)
Q Consensus 425 qe~av-k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s 503 (724)
||.|- -.||+.++.+||.||..+++.--- +..|+||++++.- +++..+..+|.......++---....-+.
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~~---~~~~~~~~~e~~~~~lr~e~ke~K~rE~r 94 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSN-----VQAENERLSQLNQ---ELRKECEDLELERKRLREEIKEYKFREAR 94 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 569999999999999988775433 4578999999754 45666666666555543333333344456
Q ss_pred hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 004913 504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHN 582 (724)
Q Consensus 504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e 582 (724)
..++.- |.+|--..|+|+-.|.+--.|+| -.|-++|.|--|+-.|+++..++-.=..-+=++-.|.=..|+.|| |
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQvefE-~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER---e 170 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVEFE-GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER---E 170 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 666666 77777788999999999899999 468899999999999988866543322222222233334566666 3
Q ss_pred hHHHHHHHHHH
Q 004913 583 HMKTVREKLLH 593 (724)
Q Consensus 583 ~~~~ar~kllh 593 (724)
...+-|+.|-|
T Consensus 171 qk~~LrkEL~~ 181 (717)
T PF09730_consen 171 QKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 100
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.74 E-value=0.54 Score=53.82 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=88.4
Q ss_pred HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 409 LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 409 l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
+...+.+.+.+..+|.+.-+-...+...+..|+..|+..++...|.++.---. +++++. ..+.|..+.+|--
T Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~-~~~L~~---~F~~LA~~ile~k---- 126 (475)
T PRK10361 55 SEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINS-EQRLSE---QFENLANRIFEHS---- 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHH----
Confidence 34444555566666666666667777777777777777777776655443333 555554 4455555544321
Q ss_pred cccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 489 SKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 489 s~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
-++..+.+. +-.=|.=++++++.+.++.++++-+...+.--|..|||+|...+..|.+|-.
T Consensus 127 ------------~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~ 189 (475)
T PRK10361 127 ------------NRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAI 189 (475)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223333 3344667888888888999999988888889999999999998887777643
No 101
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.71 E-value=1.2 Score=57.74 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=149.1
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH------HHHHHHHHHhhHhhhh
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK------ETLQQAILSERERLTQ 468 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k------e~lqQa~l~ErEr~t~ 468 (724)
+...+-.+..++.++.-++-.|.++-.-|=-...-++|=..|.+.|+..++++|+... .+||+.|.....++--
T Consensus 649 ~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~ 728 (1822)
T KOG4674|consen 649 KKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHT 728 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888999999888888888999999999999999999988655 7899999997776666
Q ss_pred hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 004913 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK 547 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK 547 (724)
|-=+|=-|..+.--.+..+.....++...-.+..++..|.+ +..+....+..+-+++-...++|.---|-+.-+-..++
T Consensus 729 ~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~ 808 (1822)
T KOG4674|consen 729 LSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIK 808 (1822)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678788888888888888888888888888899999999 88888888877777775555555433333333334444
Q ss_pred HHhhhhHHHHHHHHHHHHhHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 548 FLRSSQIGLKQELSQMLNEKS-----------KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 548 sLR~s~~~lk~el~~~~~eK~-----------e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
.|-+...+||+++..-..+-. ..-..|-.+.............+-.+++.|-.++.+-+..+
T Consensus 809 eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l 881 (1822)
T KOG4674|consen 809 ELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRL 881 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433322222 22233444444444555555555555666666555555443
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.59 E-value=0.2 Score=49.24 Aligned_cols=107 Identities=23% Similarity=0.332 Sum_probs=70.5
Q ss_pred HHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 454 TLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 454 ~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
.++.-+.....+++++++++++++.+..+.+..+...++..... .++.. ..++++..++.++.+.+++.++.
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL-------RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666788999999999999999999998888774443322 24444 66677777777777777777777
Q ss_pred hhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 533 AKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 533 akskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
++++-+|..-.++.+++.+.-..+..++..++..+
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 151 -----------KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444444444433
No 103
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.41 E-value=2 Score=52.25 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
+.+++....++++.+..+..++.....+..+.+-+-.+.|+....+++.++...+..+..++..+++.+++......+-.
T Consensus 327 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 406 (908)
T COG0419 327 LEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666667776666677777777777788887888888888788888888888888888777777778
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 004913 590 KLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 590 kllhec~iL~~rLqEC~~~~~ 610 (724)
++.+.+..+.+++.+|.-.+-
T Consensus 407 ~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 407 EIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877776553
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.36 E-value=4.3 Score=47.11 Aligned_cols=233 Identities=20% Similarity=0.263 Sum_probs=114.9
Q ss_pred hHhHHHHHHHHHHhhhhcchHHH---HHHhhh--------------hhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDL---ITRLNQ--------------EMTVKDYLMTKVKDLEVELETTKQKSKETLQQAI 459 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDL---iaRLnq--------------e~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~ 459 (724)
+-..||..++..+...++.|+++ +..|.. ++-.+.|--+.+ +++.++++.+.+..+++....
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~-~i~~~i~~l~~~i~~~~~~l~ 273 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL-DIEKEIQDLKEQIDENLALLE 273 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC-ChHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999876 444433 233334433332 467777777766666553322
Q ss_pred HHh----hHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh-HHHHHHHHHHH----------HHH
Q 004913 460 LSE----RERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN-VLQELDATKEQ----------LEN 523 (724)
Q Consensus 460 l~E----rEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~----------~e~ 523 (724)
-.+ ++.+..++=.++.|... ++.|..-+.. +............+..+++ +..|++.+++. +..
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~-lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~ 352 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDI-LEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQ 352 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHH
Confidence 110 11222222222222211 1111111111 2222222333344455555 55566555555 444
Q ss_pred HHHHHHHHhhhcccchhH---HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004913 524 LSKRYEELEAKSKADIKV---LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600 (724)
Q Consensus 524 l~k~~~elEakskad~Kv---LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~ 600 (724)
+.++..+++...+.-.+. -......+.....++.++++...++..++...|+.=+.....++.--.++-...+-++.
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444311110 01112344455555555566666666665555554443333333333333334444555
Q ss_pred HHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHH
Q 004913 601 RFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITE 644 (724)
Q Consensus 601 rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaE 644 (724)
+++..++.-+ |.+-++++.+..++|.-|-.+
T Consensus 433 ~l~k~~lpgi-------------p~~y~~~~~~~~~~i~~l~~~ 463 (569)
T PRK04778 433 YLEKSNLPGL-------------PEDYLEMFFEVSDEIEALAEE 463 (569)
T ss_pred HHHHcCCCCC-------------cHHHHHHHHHHHHHHHHHHHH
Confidence 5555555433 777888888888888766554
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.22 E-value=1.9 Score=54.46 Aligned_cols=20 Identities=10% Similarity=0.146 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHhhHHHHH
Q 004913 673 DNELREVIADILVDNAKLRK 692 (724)
Q Consensus 673 d~elrk~lad~~idna~LRk 692 (724)
.+-.|+++....|||+++|-
T Consensus 1147 ~~~w~~~~~~~~~~~i~~~~ 1166 (1311)
T TIGR00606 1147 RDLWRSTYRGQDIEYIEIRS 1166 (1311)
T ss_pred HHHHHHHcCccHHHHhhcCC
Confidence 33445556666777777743
No 106
>PRK09039 hypothetical protein; Validated
Probab=95.19 E-value=1.2 Score=48.78 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=98.6
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHH
Q 004913 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKD 507 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e 507 (724)
-+.=||..-|..++.||+....+-.+ |=..+--||.+-..+|=.+.+++..+...+..-. ..+...+...+.
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~qIa~-L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-------~Le~~~~~~~~~ 110 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQIAE-LADLLSLERQGNQDLQDSVANLRASLSAAEAERS-------RLQALLAELAGA 110 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhh
Confidence 34456666666666666666655544 4444444577777766666666665543222111 111111111111
Q ss_pred H-hHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 004913 508 K-NVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKT 586 (724)
Q Consensus 508 ~-~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ 586 (724)
. ++...+...++.|..+...+.| +..++..|-.||-.||.+...|..+|..+-....+...-|..=+++-+.+.+
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se----~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222333333444444443332 4567888899999999999999999888887777777777666666666654
Q ss_pred HHH-HHHHHHHHHHHHHhhhccc---ccccccCceecc
Q 004913 587 VRE-KLLHECRILLNRFQACNAN---LYAEEEDNVILE 620 (724)
Q Consensus 587 ar~-kllhec~iL~~rLqEC~~~---~~~ee~~~~~~~ 620 (724)
.+. .|-.=+.-+..||++|--+ +-++ +|.+++.
T Consensus 187 ~~~~~l~~~~~~~~~~l~~~~~~~~~iri~-g~~~~~~ 223 (343)
T PRK09039 187 QRVQELNRYRSEFFGRLREILGDREGIRIV-GDRFVFQ 223 (343)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCCCCCcEEE-CCEEEec
Confidence 423 2333344455666765544 2333 4545443
No 107
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.18 E-value=2.5 Score=55.45 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 560 LSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 560 l~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
..+.-..+.+++.-|..||...+.+.-+|++|-+|+..|..||.+-
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566667778888888888899999999999999998876
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.98 E-value=2.9 Score=48.46 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=83.0
Q ss_pred HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHH---HHHHHHH
Q 004913 409 LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQ---KSLEMEW 485 (724)
Q Consensus 409 l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~---k~~e~E~ 485 (724)
+...+...++|-.-|..|+..|.|.....+.++..|+.++..+++.....--. +++++.-..+++..|. ++.+++.
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l-~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV-KQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHccccCchhHHHHHHHHHHHHHHHH
Confidence 33344556777788889999999999999999999999888877665544333 4443322343333332 2222222
Q ss_pred HhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 486 KLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 486 ~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~ 565 (724)
.++... ....++.. ....++++++.+.++.++++.. ..-+...|..||....+.++.|.++-+
T Consensus 363 ~~~~~~-----------~~i~~~~~--~ysel~e~leel~e~leeie~e----q~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 363 QYDEIT-----------ERIAEQEI--AYSELQEELEEILKQLEEIEKE----QEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred HHHHHH-----------HHHHcCCC--CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222110 00111110 1333444444444444444432 444556666777777777777776666
Q ss_pred hHHHHHHHHHH
Q 004913 566 EKSKTEELLQQ 576 (724)
Q Consensus 566 eK~e~E~~l~~ 576 (724)
...++.+.+.+
T Consensus 426 ~L~~ikr~l~k 436 (569)
T PRK04778 426 KLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHH
Confidence 65555555543
No 109
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.95 E-value=2.9 Score=52.31 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
++||+-+-.=|++-+-++=-||+++..+.+-+.....-++---.+.....-+.+-.. +.+++.++.+-+-+..++..+|
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444467777777777777777776666555443221111121122222222 4445555555555555555555
Q ss_pred hh
Q 004913 532 EA 533 (724)
Q Consensus 532 Ea 533 (724)
|.
T Consensus 1625 ~~ 1626 (1758)
T KOG0994|consen 1625 ET 1626 (1758)
T ss_pred HH
Confidence 53
No 110
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.91 E-value=2.8 Score=42.84 Aligned_cols=146 Identities=18% Similarity=0.311 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHHhhh-------hcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhh
Q 004913 398 LSRVLLTMERRLVTA-------KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (724)
Q Consensus 398 l~rvl~t~~~rl~~a-------ktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mq 470 (724)
=|++|..+|.|..-| .+|+-.||++-|.|+-|=.-...|.++-+.+++....+....|+.
T Consensus 34 ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k------------- 100 (194)
T PF15619_consen 34 ENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK------------- 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 378999999996554 589999999999999875444444444444444333332222221
Q ss_pred hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 004913 471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL 549 (724)
Q Consensus 471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL 549 (724)
++.++.- |+..-.++ -..|.+ +.++|..++..++.--++..+||.+....-|-..+++.+-
T Consensus 101 -----~~~~l~~----L~~L~~dk---------nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 101 -----TKDELKH----LKKLSEDK---------NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred -----HHHHHHH----HHHHHHcC---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111111 11111111 112233 5556666666666666666666655555555555555555
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 550 RSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 550 R~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
+..+.+++.++..+..+-..+...|
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444443
No 111
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.89 E-value=5.1 Score=52.77 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=59.4
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH--HHHHHHhhHhhhhhhhcH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL--QQAILSERERLTQMQWDM 473 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l--qQa~l~ErEr~t~mqwdm 473 (724)
.||++-=.-+|.++....+|....=..+|+-...+.=|..-|.|||+.|+..++...+.- ...+-. |- .-+|=.+
T Consensus 981 ~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~--el-~~~~e~~ 1057 (1930)
T KOG0161|consen 981 SKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEG--EL-KDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHhhhHH
Confidence 344444444555555555555555555555555555566666666666665544333322 111111 11 2223344
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS 535 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks 535 (724)
+++-.+-.+++..|+..+ .+..++..+.+ ....+..+++++..|+.++.+++..-
T Consensus 1058 ~~~~~~~~el~~~l~kke-------~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKE-------SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445544444442 22233333333 33344444555555555544444433
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.84 E-value=4 Score=52.68 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=75.0
Q ss_pred EEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhh
Q 004913 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT 467 (724)
Q Consensus 388 ~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t 467 (724)
+.=|.+-|..+-.++. ...|...|+..+++.=.+|..-..+-..|..+++.||.+++..++.....- ..+.-...+.
T Consensus 275 ~r~~eERR~liEEAag-~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e--e~lr~q~ei~ 351 (1486)
T PRK04863 275 MRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ--TALRQQEKIE 351 (1486)
T ss_pred hhCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4556777777777754 558888888888887777777777779999999999999998877644332 2222256677
Q ss_pred hhhhcHHHHHHHHHHHHHHhccc
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.++.++++|..+..+.+..+...
T Consensus 352 ~l~~~LeELee~Lee~eeeLeel 374 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEA 374 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877655
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=1.1 Score=53.88 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=16.1
Q ss_pred HHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCC
Q 004913 460 LSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGN 494 (724)
Q Consensus 460 l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~ 494 (724)
+-+.++-+|+|-+++-|--|.++++.+|+--.-+.
T Consensus 433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 33444444444444444444444444444443333
No 114
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.61 E-value=4.5 Score=42.59 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhh
Q 004913 403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDL 440 (724)
Q Consensus 403 ~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDl 440 (724)
..|+--+.+++.+.+|+=.|+..+.+.+.-|-.-+..|
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~l 108 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESL 108 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566677777777777777755555444433333
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.49 E-value=3.7 Score=42.49 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=42.2
Q ss_pred HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH--------------------HHHHHHHHHhhH
Q 004913 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK--------------------ETLQQAILSERE 464 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k--------------------e~lqQa~l~ErE 464 (724)
.+.|+..+++..++.-.|+.+..+==.=|..|+..||.+|+.+-.+.. ..|++-...-=+
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee 92 (237)
T PF00261_consen 13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444444444444444444444444445555555544444433322 223333333346
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lk 488 (724)
||.++.+.+.+.+..+.+.+.++.
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666666666654
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.38 E-value=1.5 Score=49.51 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHHHHHHH
Q 004913 516 ATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIGLKQEL 560 (724)
Q Consensus 516 ~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~lk~el 560 (724)
...+....|+.+.+++|.... .+.+.|..+.+.++....++.+++
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555544422 123344444444444444444443
No 117
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.36 E-value=3.1 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhh
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQ 425 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnq 425 (724)
+.+|++|+.....+.+..-.||..
T Consensus 38 ~~~l~rri~~lE~~le~~eerL~~ 61 (237)
T PF00261_consen 38 VASLQRRIQLLEEELERAEERLEE 61 (237)
T ss_dssp HHHHHHHHHHHHCCCHHHHCCCCH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666666655555554444433
No 118
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=4 Score=47.80 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=112.5
Q ss_pred hHHHHHHhhhhhhHHHHHHhhhhhhHHHHH---HHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccC
Q 004913 416 MEDLITRLNQEMTVKDYLMTKVKDLEVELE---TTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQD 492 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe---~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~ 492 (724)
+.+|-+||++...+ +.++..+|+...+ .+-+ ..+..-+++-.=||+.--||=|.--++ .+...+++
T Consensus 219 ~~Elk~~l~~~~~~---i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~----~y~~~~~~--- 287 (581)
T KOG0995|consen 219 EDELKHRLEKYFTS---IANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQ----AYVSQMKS--- 287 (581)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHH----HHHHHHHh---
Confidence 45788888876553 2334444433222 2222 333333443333666666665554333 33333332
Q ss_pred CCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913 493 GNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 493 ~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E 571 (724)
.++...+..+ +..|+....++.|.|+++.++|-.+..-+ ++=+++|+-.+.-..+|+++|..+-.++..+-
T Consensus 288 -------k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 288 -------KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555566 77788888889999999999888888777 78899999999999999999998888887777
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 572 ELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 572 ~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
+-+=..+-..+.-.-+-.+.+-+|.-|..||.=-
T Consensus 360 k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 360 KEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444555567778888898888887543
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.09 E-value=4.5 Score=42.83 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHH
Q 004913 438 KDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDA 516 (724)
Q Consensus 438 kDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~ 516 (724)
+.+.+++++. .+..+++++++-+=+.-+.+.+=++.++|.+.-.-|.++....+.+ + ...+..|.+ +.++...
T Consensus 34 ~k~~~e~e~~-~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~---e--~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 34 KKAKAELEAL-NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER---E--LRALNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH---H--HHHHHHHHHHHHHHHHH
Confidence 3444555443 4556777777777677778888899999999888888884442221 1 133444555 5555555
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004913 517 TKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECR 596 (724)
Q Consensus 517 ~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~ 596 (724)
++.++..|..++.+++ .+++.|...+..++++..++++.++..+....+.=..+.. ++.+.......+|+.+..
T Consensus 108 le~el~~l~~~~~~l~----~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~--~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 108 LEDELAELMEEIEKLE----KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS--KREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCHHHHHHHH
Confidence 5555555555555554 4577788888888889999999999888887774333333 334445556778888888
Q ss_pred HHHHHH
Q 004913 597 ILLNRF 602 (724)
Q Consensus 597 iL~~rL 602 (724)
-+++--
T Consensus 182 ri~~~~ 187 (239)
T COG1579 182 RIRKNK 187 (239)
T ss_pred HHHhcC
Confidence 777654
No 120
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=5.1 Score=50.27 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=66.4
Q ss_pred cchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhh----hhHH---HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQE----MTVK---DYLMTKVKDLEVELETTKQKSKETLQQAILSERER 465 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe----~avk---~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr 465 (724)
+.-.|..++=.+++.|..-+|-.-+++-.++++- +.++ .+++.|.+.||.+++..+.+ +..++-|.-.=|.-
T Consensus 363 ~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~-~~e~e~~pe~~~~~ 441 (1293)
T KOG0996|consen 363 EEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRK-KSELEKAPEKARIE 441 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhCchhhHhH
Confidence 4445666666677777777777777777777643 3333 58899999999999998754 56778887777888
Q ss_pred hhhhhhcHHHHHHHHHHHHHHh
Q 004913 466 LTQMQWDMEELRQKSLEMEWKL 487 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~l 487 (724)
|..+|=+.+.|-....--+.+|
T Consensus 442 i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 442 IQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777655444444433
No 121
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.02 E-value=8.3 Score=43.97 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhHhhhh---------------hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHH
Q 004913 452 KETLQQAILSERERLTQ---------------MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDA 516 (724)
Q Consensus 452 ke~lqQa~l~ErEr~t~---------------mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~ 516 (724)
|-.|+|...-|||-|-+ =|-.+|.||+..-+||.+|.-+| .+.. |.|.+.||.
T Consensus 145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEq-----------Ealv-N~LwKrmdk 212 (552)
T KOG2129|consen 145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQ-----------EALV-NSLWKRMDK 212 (552)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHH-----------HHHH-HHHHHHHHH
Confidence 33467777777765432 15556777777777777765551 1111 226677777
Q ss_pred HHHHHHHHHHHHHHH--------------------hhhcccchhHHHHHHHHHhhhhHHH----HHHHHHHHHhHHHHHH
Q 004913 517 TKEQLENLSKRYEEL--------------------EAKSKADIKVLVKEVKFLRSSQIGL----KQELSQMLNEKSKTEE 572 (724)
Q Consensus 517 ~~~~~e~l~k~~~el--------------------Eakskad~KvLvKEVKsLR~s~~~l----k~el~~~~~eK~e~E~ 572 (724)
..+.-..|++++++= -+.-++-+..|--||-.||+....- ..++-||..|+...+.
T Consensus 213 Le~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re 292 (552)
T KOG2129|consen 213 LEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE 292 (552)
T ss_pred HHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 777777777776531 1223456677888998887765443 3445556655554433
Q ss_pred HHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhhhcccccccccCceecc
Q 004913 573 LLQQERQTHNHM---KTVREKLLHECRILLNRFQACNANLYAEEEDNVILE 620 (724)
Q Consensus 573 ~l~~Er~~~e~~---~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~ 620 (724)
-+-++..+-.+. +.|.-..+.|-+-+..-+.|--+|..+.-+|.+-|-
T Consensus 293 en~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~Va 343 (552)
T KOG2129|consen 293 ENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVEVA 343 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCceeee
Confidence 322222221111 123345566666666666676677766667766543
No 122
>PRK03918 chromosome segregation protein; Provisional
Probab=93.92 E-value=7.8 Score=46.33 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 004913 594 ECRILLNRFQ 603 (724)
Q Consensus 594 ec~iL~~rLq 603 (724)
++..|+..+.
T Consensus 373 ~l~~l~~~l~ 382 (880)
T PRK03918 373 ELERLKKRLT 382 (880)
T ss_pred HHHHHHHHhc
Confidence 4444444433
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=15 Score=43.28 Aligned_cols=240 Identities=26% Similarity=0.293 Sum_probs=131.5
Q ss_pred ccchhhHhHHHHHHHHHHhhhhcchHHHHHH---------------------hhhhhhHH-HHHHhhhhhhHHHHHHHHH
Q 004913 392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITR---------------------LNQEMTVK-DYLMTKVKDLEVELETTKQ 449 (724)
Q Consensus 392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaR---------------------Lnqe~avk-~fL~tKvkDlE~eLe~t~~ 449 (724)
+++.+-|+.-+.-||.-+..++++|+-+--- |=||-|.| +|+.-||-+||.||...++
T Consensus 42 LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~ 121 (772)
T KOG0999|consen 42 LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ 121 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888766432 33444554 6999999999999987776
Q ss_pred hhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHH
Q 004913 450 KSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRY 528 (724)
Q Consensus 450 ~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~ 528 (724)
.--. +-.|+|||++.--|.-+--...-.--..|+.+-- .-...-+.+.+|-- |.+|---.++++-+|.+-.
T Consensus 122 el~~-----~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK---e~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 122 ELTN-----VQEENERLEKVHSDLKESNAAVEDQRRRLRDELK---EYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHH-----HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 5433 3457888887544332211111110011111100 00112244444444 5555556677777777777
Q ss_pred HHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004913 529 EELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE-------ELLQQERQTHNHMKTVREKLLHECRILLNR 601 (724)
Q Consensus 529 ~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E-------~~l~~Er~~~e~~~~ar~kllhec~iL~~r 601 (724)
.|+|- .|-++|-|-.||--|-.+.. .+..=|...| ..|+.||+ .+.|.+|=| .--+++
T Consensus 194 VEyEg-lkheikRleEe~elln~q~e-------e~~~Lk~IAekQlEEALeTlq~ERe----qk~alkkEL---~q~~n~ 258 (772)
T KOG0999|consen 194 VEYEG-LKHEIKRLEEETELLNSQLE-------EAIRLKEIAEKQLEEALETLQQERE----QKNALKKEL---SQYRNA 258 (772)
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH---HHhcch
Confidence 77764 46677777777665544433 3322222222 23455552 334444433 323332
Q ss_pred Hhhhcc-cccccccCceecccCCh-hh-----------HHHhhc-----ccchhHHHHHHHHhhhhhhhhh
Q 004913 602 FQACNA-NLYAEEEDNVILESSSA-AD-----------ALALLT-----SSDDQISLLITEAQLLAEDSKA 654 (724)
Q Consensus 602 LqEC~~-~~~~ee~~~~~~~~ss~-~d-----------a~dlL~-----tsDnrI~lLlaEaqll~~d~e~ 654 (724)
=--.+. ++++-=+|+|--|+++| +| |.|+-| .||=--.++++|.|-|-+.-.+
T Consensus 259 e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~s 329 (772)
T KOG0999|consen 259 EDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMS 329 (772)
T ss_pred hhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 221111 12233344666666655 22 444443 3777788899999998776644
No 124
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.77 E-value=8.4 Score=44.49 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=60.1
Q ss_pred hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHH---HhhHhhhhhhhcHHHHHHHHHHHHHHhccccC
Q 004913 416 MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAIL---SERERLTQMQWDMEELRQKSLEMEWKLKSKQD 492 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l---~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~ 492 (724)
-+.-+-+||.+.....-|-.|+...-.++...+...+.....-+- .+++.++.++=.+.-+...+.++..+|+.-.+
T Consensus 223 ae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~ 302 (522)
T PF05701_consen 223 AEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKE 302 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677776665555555554444444444433333331111 34566677776677777777777777776655
Q ss_pred CCCcccchhhhhHHHHh-HHHHHHHHHHHHH
Q 004913 493 GNPHAESMEESTVKDKN-VLQELDATKEQLE 522 (724)
Q Consensus 493 ~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e 522 (724)
+-........++..|.+ ...++..+++...
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556665555 5555555554443
No 125
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.46 E-value=23 Score=42.81 Aligned_cols=208 Identities=18% Similarity=0.219 Sum_probs=123.8
Q ss_pred ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhh----HHHHHHhhhh---hhHH---HHHHHHHhhHHHHHHHHHH
Q 004913 392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT----VKDYLMTKVK---DLEV---ELETTKQKSKETLQQAILS 461 (724)
Q Consensus 392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~a----vk~fL~tKvk---DlE~---eLe~t~~~~ke~lqQa~l~ 461 (724)
.|...+|-+=+..|+..|...+.--+||=..|++.+. .|.=|..+=+ .|+- +|.+.||+-|.+|+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~----- 491 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ----- 491 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3455577777778888888888778888888665444 3333322222 2222 23334444444443
Q ss_pred hhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhh---------------hHHHHh-HHHHHHHHHHHHHHHH
Q 004913 462 ERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES---------------TVKDKN-VLQELDATKEQLENLS 525 (724)
Q Consensus 462 ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s---------------~~~e~~-~~qel~~~~~~~e~l~ 525 (724)
++-=-+-|.|++-.+.|..|+.++-.+...|.+-+. ..+... |..|++..|-++....
T Consensus 492 ------~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 492 ------QLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335567777778888887775443333222111 111111 3344444444444433
Q ss_pred HHHHHHhhh----------cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 526 KRYEELEAK----------SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC 595 (724)
Q Consensus 526 k~~~elEak----------skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec 595 (724)
++..++|.. +..|.-+|.-.+-.|+--..+|+.=|+.-=+-|.+|=..|-.=|...|-+....++-=.||
T Consensus 566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 2446667777777777777777777777777777777777777777777888888888899
Q ss_pred HHHHHHHhhhccccc
Q 004913 596 RILLNRFQACNANLY 610 (724)
Q Consensus 596 ~iL~~rLqEC~~~~~ 610 (724)
..|..++-+--.-.+
T Consensus 646 ~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 646 EELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999987655444
No 126
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.43 E-value=9.3 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhcccc---cccccCce
Q 004913 592 LHECRILLNRFQACNANL---YAEEEDNV 617 (724)
Q Consensus 592 lhec~iL~~rLqEC~~~~---~~ee~~~~ 617 (724)
|.+.+-++.+|+|.|-.+ |.||=|.+
T Consensus 474 lEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 474 LEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999998766 45554443
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.38 E-value=11 Score=40.87 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=100.4
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhh--hhHHHHHHhhhh---hhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhc
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQE--MTVKDYLMTKVK---DLEVELETTKQKSKETLQQAILSERERLTQMQWD 472 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe--~avk~fL~tKvk---DlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwd 472 (724)
..-+...|.+++...+.=.+++-+....+ .-+|+|.+.--. -+...+...|.-++- +-+-.-..|.
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl---------~aK~~WYeWR 143 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARL---------EAKKMWYEWR 143 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 34567778888887777777776666443 367899775311 122222222222221 1122233566
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~ 551 (724)
|.=+..=...++.++...+.+........+.+..-.. +......+++++..|++...+++.--+.+.+-|-.|++.+..
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444444444444 555556666666666666666666555555555555555555
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 552 s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
...++++++.+.-.++.+++.-+ +....-..+++.+++-+...+.+|
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i-------~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKI-------EELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555554444444443333 223334444555555555555444
No 128
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.36 E-value=5.1 Score=47.99 Aligned_cols=88 Identities=22% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHH---H-HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLV---K-EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVR 588 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLv---K-EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar 588 (724)
++....+.+-+++-..+++|+|.+|.-.-+- + +-|.=|.-|-++.++-+.+...-.++--.|++- |++ +||
T Consensus 531 e~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~----Eq~-aar 605 (961)
T KOG4673|consen 531 ELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKK----EQQ-AAR 605 (961)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHH
Confidence 4455555556666667778888777543321 1 112224445566666666666666666666543 344 555
Q ss_pred HH--HHHHHHHHHHHHhhh
Q 004913 589 EK--LLHECRILLNRFQAC 605 (724)
Q Consensus 589 ~k--llhec~iL~~rLqEC 605 (724)
+. |-||++-|+.|||+.
T Consensus 606 rEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 54 558999999999974
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.23 E-value=11 Score=45.32 Aligned_cols=69 Identities=29% Similarity=0.380 Sum_probs=37.3
Q ss_pred hhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHH---HHHHhh---HhhhhhhhcHHHHHHHHHHHH
Q 004913 411 TAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQ---AILSER---ERLTQMQWDMEELRQKSLEME 484 (724)
Q Consensus 411 ~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQ---a~l~Er---Er~t~mqwdmeelr~k~~e~E 484 (724)
+++.--.|-+.|| -.-||-|-.||...||--.|==+| ..-.|| .-+.+||=+.|+|..|+.++.
T Consensus 411 ~~~~~~~~a~~rL----------E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 411 NAQNSEPDAISRL----------EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred cccccChHHHHHH----------HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666654 444566888888888766554444 222233 335565555555555555554
Q ss_pred HHhcc
Q 004913 485 WKLKS 489 (724)
Q Consensus 485 ~~lks 489 (724)
...+.
T Consensus 481 ~aRq~ 485 (697)
T PF09726_consen 481 QARQQ 485 (697)
T ss_pred HHHHH
Confidence 44433
No 130
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=93.22 E-value=11 Score=45.37 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=92.7
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh---hHhhhhhhhcHHHHHH
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQ 478 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E---rEr~t~mqwdmeelr~ 478 (724)
|..++.-+...-..-||+..|-.....+.+ |.+-|-|+|.+++.+...-|++++=|+==| -..|+-++++||+|=+
T Consensus 66 i~~~l~lIe~~v~~ie~~q~r~di~~~~~d-l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~ 144 (683)
T PF08580_consen 66 ISRFLDLIEVYVSAIEDLQLREDIANSLFD-LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIR 144 (683)
T ss_pred HHHHHHHHHhhccccccccccccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443332234444444443333333 667788888899999999999999887331 3577889999999999
Q ss_pred HHHHHHHH-hccccCCCCcccchhhhhHHHH-------------------------h---HHHHHHHHHHHHHHHHHHHH
Q 004913 479 KSLEMEWK-LKSKQDGNPHAESMEESTVKDK-------------------------N---VLQELDATKEQLENLSKRYE 529 (724)
Q Consensus 479 k~~e~E~~-lks~~~~~~~~e~~~~s~~~e~-------------------------~---~~qel~~~~~~~e~l~k~~~ 529 (724)
.|+|||++ .++-- ....-..+++.|+++. . |...|.=++.=|+-|=.+.+
T Consensus 145 ~vfemeE~R~~Sp~-~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~ 223 (683)
T PF08580_consen 145 LVFEMEEKRHSSPV-RHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIE 223 (683)
T ss_pred HHHHHHHHHccCCc-ccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999864 44431 1112223334444444 1 33334445555666667777
Q ss_pred HHhhhcccc-----------hhHHHHHHHHHhhhhHHHHHHHH
Q 004913 530 ELEAKSKAD-----------IKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 530 elEakskad-----------~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
+|+.-+..= .+.|.+..|.|.+.-.+||+||-
T Consensus 224 ~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELi 266 (683)
T PF08580_consen 224 EFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELI 266 (683)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776544221 23455556666666666666654
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.22 E-value=3.3 Score=48.39 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh----------HHHHHHHHHHhhHhhhhhh
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS----------KETLQQAILSERERLTQMQ 470 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~----------ke~lqQa~l~ErEr~t~mq 470 (724)
-+.-.++....+.-+.-|...|||+-.|--.++..+.|.||+++...+..+ |..++|+++.=.+.-.+.|
T Consensus 128 ~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q 207 (546)
T KOG0977|consen 128 KLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQ 207 (546)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444556667777788899999999999999999999999998877654 6677777777555566666
Q ss_pred hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHH-HHHhhhcccchhHHH----
Q 004913 471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRY-EELEAKSKADIKVLV---- 543 (724)
Q Consensus 471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~-~elEakskad~KvLv---- 543 (724)
==+|||.-.-...+..|..++.- ...+.+ .....+.+ |.+-|..+|.|+|.-.+.. +++|---+..+--+-
T Consensus 208 ~Lleel~f~~~~h~~eI~e~~~~-~~rd~t-~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~ 285 (546)
T KOG0977|consen 208 TLLEELAFLKRIHKQEIEEERRK-ARRDTT-ADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAE 285 (546)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH-Hhhccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence 66666666665555555444211 111121 33444444 7778888888888765443 344443333333222
Q ss_pred ----------HHHHHHhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHH
Q 004913 544 ----------KEVKFLRSSQIGLKQELSQ-------MLNEKSKTEELLQQERQTHNHMKTVR----EKLLHECRILLNRF 602 (724)
Q Consensus 544 ----------KEVKsLR~s~~~lk~el~~-------~~~eK~e~E~~l~~Er~~~e~~~~ar----~kllhec~iL~~rL 602 (724)
-||+++|+...+|...|+. ..+.-.+++..|-.|+..-|.+.+-+ +++=.||..|-.-|
T Consensus 286 ~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 286 RANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred cccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6788877777777766654 44555566777777777666665444 34445566655555
Q ss_pred hh
Q 004913 603 QA 604 (724)
Q Consensus 603 qE 604 (724)
|.
T Consensus 366 q~ 367 (546)
T KOG0977|consen 366 QK 367 (546)
T ss_pred HH
Confidence 53
No 132
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.12 E-value=19 Score=40.85 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=5.5
Q ss_pred chHHHHHHHHHHH
Q 004913 672 TDNELREVIADIL 684 (724)
Q Consensus 672 ~d~elrk~lad~~ 684 (724)
.|.+.+..+.++|
T Consensus 510 ld~~~~~~~~~~l 522 (562)
T PHA02562 510 LDAEGTKALLSIL 522 (562)
T ss_pred cchhHHHHHHHHH
Confidence 3444444444433
No 133
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.08 E-value=33 Score=43.57 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 004913 674 NELREVIADILVDNAKLRKQVNSVLRRAL 702 (724)
Q Consensus 674 ~elrk~lad~~idna~LRkq~Nsv~r~al 702 (724)
+++...+-|++..-.+++++++.-+.+.-
T Consensus 898 ~~~~~~~~~~~~~~~~l~~~l~~~~~~f~ 926 (1201)
T PF12128_consen 898 DERLRDLEDLLQRRKRLREELKKAVERFK 926 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888889999999988777543
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.99 E-value=2.1 Score=46.78 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=112.9
Q ss_pred HHHHhhhhhhHH-HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH-------------hhHhhhhhhhc------------
Q 004913 419 LITRLNQEMTVK-DYLMTKVKDLEVELETTKQKSKETLQQAILS-------------ERERLTQMQWD------------ 472 (724)
Q Consensus 419 LiaRLnqe~avk-~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~-------------ErEr~t~mqwd------------ 472 (724)
|.||+.|..--+ ..|+.++..||.+|......- ..|+.-+.. |-+.-+...|+
T Consensus 80 laA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v-~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~ 158 (306)
T PF04849_consen 80 LAARIGQSLLEQNQDLSERNEALEEQLGAALEQV-EQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQK 158 (306)
T ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccccccccccc
Confidence 567776665333 467778888888776554432 223333322 12222233443
Q ss_pred ---HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh---H---HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 004913 473 ---MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN---V---LQELDATKEQLENLSKRYEELEAKSKADIKVLV 543 (724)
Q Consensus 473 ---meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~---~---~qel~~~~~~~e~l~k~~~elEakskad~KvLv 543 (724)
.+-|++|+...|..-+....+-.+......+ .+|++ + .+++..+..++..|+++... -.-+-.---
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-~EekEqqLv~dcv~QL~~An~qia~LseELa~----k~Ee~~rQQ 233 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDT-YEEKEQQLVLDCVKQLSEANQQIASLSEELAR----KTEENRRQQ 233 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH----HHHHHHHHH
Confidence 4788888888876555443333222221111 12222 2 36778888888877765532 223344556
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN 608 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~ 608 (724)
.||=+|.++...|++.+.+++.|+.++-..|...| .+...|--|..-|+.|-.||-.-
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk-------e~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK-------ESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999877 45556777888899999999643
No 135
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.94 E-value=13 Score=40.86 Aligned_cols=167 Identities=19% Similarity=0.260 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhhh-hHHHHHHhhhhhhHHHH-------HHHHHhhHHHHHHHHHHhhHhh-hhhh
Q 004913 400 RVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLMTKVKDLEVEL-------ETTKQKSKETLQQAILSERERL-TQMQ 470 (724)
Q Consensus 400 rvl~t~~~rl~~aktdmEDLiaRLnqe~-avk~fL~tKvkDlE~eL-------e~t~~~~ke~lqQa~l~ErEr~-t~mq 470 (724)
++-++|+++|.+..++.-+|-..|-+|- .+=.=|++|+.+||.+. +..+. -|-.|+-+.-.|.|-| .-+|
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~-EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR-EKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHH
Confidence 4567899999999999888888887753 44566778888887654 33222 3334677777777754 5566
Q ss_pred hcHHHHHHHHHHHHHHhccc-cCCCCcccch--------hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 004913 471 WDMEELRQKSLEMEWKLKSK-QDGNPHAESM--------EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIK 540 (724)
Q Consensus 471 wdmeelr~k~~e~E~~lks~-~~~~~~~e~~--------~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~K 540 (724)
=-|+.|...---++.+|..- .+..+..++. .+.....-. |.+|+...++|+-..++++ .+.+.
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~-------~~k~~ 257 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEH-------SEKMA 257 (310)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 67888888777777777643 2222222111 111111112 5555555555555555544 44555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
..+.|.|.+|.-+..|+.-|..-+..+-.+-+-|
T Consensus 258 ~~~~eek~ireEN~rLqr~L~~E~erreal~R~l 291 (310)
T PF09755_consen 258 QYLQEEKEIREENRRLQRKLQREVERREALCRHL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888877777766665555544444433
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.80 E-value=2.5 Score=47.43 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=18.1
Q ss_pred EecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhh
Q 004913 389 VIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLN 424 (724)
Q Consensus 389 vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLn 424 (724)
++|..+ ..+..-+..+++++.+++++.-++-+++.
T Consensus 194 ~~~~~~-~~~~~~l~~l~~~l~~~~~~l~~~~a~~~ 228 (498)
T TIGR03007 194 ILPDQE-GDYYSEISEAQEELEAARLELNEAIAQRD 228 (498)
T ss_pred cCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 33344456666666666666555555544
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.69 E-value=31 Score=42.29 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~ 551 (724)
++++..+..+.+..+..+ ......+........+.+ +.+++..++++|+.+.++..++ .-++.++++.+.
T Consensus 656 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~--------~~~~~~l~~~~~ 726 (908)
T COG0419 656 LEELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEI--------EQLIEELESRKA 726 (908)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 666777777666666641 000000000011111111 4444444444444444444442 257777888888
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHhhhccccc---ccccCc---e-ecc
Q 004913 552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHE----CRILLNRFQACNANLY---AEEEDN---V-ILE 620 (724)
Q Consensus 552 s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhe----c~iL~~rLqEC~~~~~---~ee~~~---~-~~~ 620 (724)
....+++++..+-+....+..+-..=.... ....++..++.. ......++..-.+... ...+++ + .+.
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (908)
T COG0419 727 ELEELKKELEKLEKALELLEELREKLGKAG-LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNGGLVVVVY 805 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccccceEEEEe
Confidence 888888888877766666666665555443 334444444444 3334444443333332 222221 1 111
Q ss_pred cCChhhHHHhhcccch---hHHHHHHHHhhhhhhhhhhhhhhhhcccCCCCCcc-chHHHHHHHHHHHHhh
Q 004913 621 SSSAADALALLTSSDD---QISLLITEAQLLAEDSKAAASADVEKAHDNDVCTR-TDNELREVIADILVDN 687 (724)
Q Consensus 621 ~ss~~da~dlL~tsDn---rI~lLlaEaqll~~d~e~~~~~~~~~~~~~~~~~~-~d~elrk~lad~~idn 687 (724)
......+..-|+.-.. -|++=||=+..+.... .-..-..|++.. =|.|.+.-|+++|..-
T Consensus 806 ~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~-------~l~~l~LDEpf~~LD~e~l~~l~~~l~~i 869 (908)
T COG0419 806 DGGEVRPIKTLSGGERFLASLALRLALSDLLQGRA-------RLELLFLDEPFGTLDEERLEKLAEILEEL 869 (908)
T ss_pred cCCCccccccCCchHHHHHHHHHHHHHHHHHhccc-------CCCeeEeeCCCCCCCHHHHHHHHHHHHHH
Confidence 1111234444443332 2455556666654331 113446666665 7888999999988643
No 138
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=92.69 E-value=2.6 Score=51.09 Aligned_cols=106 Identities=25% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhccc-------cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH--hhhcccchhHH
Q 004913 473 MEELRQKSLEMEWKLKSK-------QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL--EAKSKADIKVL 542 (724)
Q Consensus 473 meelr~k~~e~E~~lks~-------~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el--Eakskad~KvL 542 (724)
.++=+++..|||-.|.+- .-.....+.-+..+-.|++ -||.+-+-+..| -++..++. ||+.| ..|-+
T Consensus 924 ~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~el--eqk~le~~eDea~aR-h~kef 1000 (1424)
T KOG4572|consen 924 IEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIEL--EQKALECKEDEAFAR-HEKEF 1000 (1424)
T ss_pred HhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHH-HHHHH
Confidence 466788888998877442 1222344455556666666 223222222222 23444444 44554 46788
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581 (724)
Q Consensus 543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~ 581 (724)
-+|.+-+|.++.++|+|+.+...++.+++..+-+|++.+
T Consensus 1001 E~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~e 1039 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGE 1039 (1424)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999999998887653
No 139
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.36 E-value=9.6 Score=47.32 Aligned_cols=177 Identities=20% Similarity=0.277 Sum_probs=103.3
Q ss_pred ecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh
Q 004913 390 IPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM 469 (724)
Q Consensus 390 lp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m 469 (724)
+=.-+-+-.+-.|..++.--.++--.-++++.+|++..+--+=|-++++.||..|.+.+. - .||+=..|-+.+
T Consensus 227 iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~-e---keq~~a~~t~~~--- 299 (1200)
T KOG0964|consen 227 IYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE-E---KEQLKARETKIS--- 299 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-H---HHHHHHHHHHHH---
Confidence 333444556666677777667777778899999999999999999999999999988765 3 344433332222
Q ss_pred hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh---hcccchhHHHHH
Q 004913 470 QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA---KSKADIKVLVKE 545 (724)
Q Consensus 470 qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa---kskad~KvLvKE 545 (724)
++-.-+|++.+..|+.-+..+...+......+ +..++...++.|.-...+|.++-- .-++++-.|-..
T Consensus 300 --------k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 300 --------KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred --------HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455667777777666665555555554444 444444444444333333333211 111122122111
Q ss_pred HH--------------------HHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH
Q 004913 546 VK--------------------FLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMK 585 (724)
Q Consensus 546 VK--------------------sLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~ 585 (724)
-+ -+|+... .|++.+.+..+.+.+||.|....+...
T Consensus 372 ~~~l~~Kqgr~sqFssk~eRDkwir~ei~----~l~~~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 372 QRDLLAKQGRYSQFSSKEERDKWIRSEIE----KLKRGINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHHHHhhccccccCcHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 11 1222211 355677888888888888886655543
No 140
>PRK09039 hypothetical protein; Validated
Probab=92.21 E-value=2.7 Score=46.04 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE 566 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e 566 (724)
|.+|+.+.|.|+..|+...++.|++. +..+.+..+|+++|..++.+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~-----------~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRD-----------RESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666554 66777777888888888766
No 141
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.16 E-value=18 Score=38.22 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+--||+.+|.....|..++...-..+..+|+-|.
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 4457777777777777777777777777777664
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.15 E-value=4.3 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 004913 555 GLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 555 ~lk~el~~~~~eK~e~E~~l~~ 576 (724)
+.++++.+...+-.++|+++.+
T Consensus 243 ~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 243 DLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445554433
No 143
>PLN02939 transferase, transferring glycosyl groups
Probab=92.01 E-value=1.3 Score=54.57 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=110.1
Q ss_pred eEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhh
Q 004913 387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (724)
Q Consensus 387 ~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~ 466 (724)
.++.--.+|.-|.--|.-||.||..|++|+-.|..+= .+ -|..||..|+.-|+++. ...+||++. +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~----~ 323 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQ-YD-----CWWEKVENLQDLLDRAT----NQVEKAALV----L 323 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchh-HH-----HHHHHHHHHHHHHHHHH----HHHHHHHHH----h
Confidence 3445567888899999999999999999999887653 22 29999999999888654 456788876 3
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
.| -.+||.|.-.+|..|+.-.-.|.. -..++-.|++++.+..++.+-.++..+++.+--.+|
T Consensus 324 ~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (977)
T PLN02939 324 DQ----NQDLRDKVDKLEASLKEANVSKFS--------------SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESI 385 (977)
T ss_pred cc----chHHHHHHHHHHHHHHHhhHhhhh--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33 247999999999888754322221 123455677888888888888999999999999999
Q ss_pred HHHhhhhHHHHHHHHH
Q 004913 547 KFLRSSQIGLKQELSQ 562 (724)
Q Consensus 547 KsLR~s~~~lk~el~~ 562 (724)
+-++.+...|+.|-..
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 386 KEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999888887543
No 144
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.01 E-value=11 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNE 566 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~e 566 (724)
..+-|.+||..|+.+...|++|+...+++
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777666665544
No 145
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.98 E-value=3.3 Score=48.39 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=74.2
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHH--HHHHHH
Q 004913 403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDME--ELRQKS 480 (724)
Q Consensus 403 ~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdme--elr~k~ 480 (724)
.++..-=..=|-++-+|=-||.-.+.==-||-+-=+-||.+|...+.. +-.|--.|-.| +++| .+|+-.
T Consensus 31 s~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~--------~~~~ts~ik~~-ye~El~~ar~~l 101 (546)
T KOG0977|consen 31 SPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV--------VGRETSGIKAK-YEAELATARKLL 101 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCCCcchhHH-hhhhHHHHHHHH
Confidence 444444456677888888888766654444444444444455444332 21111111110 0010 122222
Q ss_pred HHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhHHH
Q 004913 481 LEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQIGL 556 (724)
Q Consensus 481 ~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~~l 556 (724)
-+..-..-..+.+-.........+....+ ..+....+++++.+....+.++||+ .|+.+|.|.-|+|-||.++..|
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 21111111111111111122233333333 4444555555555556666677764 5778888888888888877777
Q ss_pred HHHHHHHHH
Q 004913 557 KQELSQMLN 565 (724)
Q Consensus 557 k~el~~~~~ 565 (724)
..+|..+.+
T Consensus 182 ~~~l~~~r~ 190 (546)
T KOG0977|consen 182 REELARARK 190 (546)
T ss_pred HHHHHHHHH
Confidence 777665544
No 146
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.93 E-value=17 Score=44.58 Aligned_cols=81 Identities=30% Similarity=0.247 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcccchhHHHHH-------HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004913 524 LSKRYEELEAKSKADIKVLVKE-------VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECR 596 (724)
Q Consensus 524 l~k~~~elEakskad~KvLvKE-------VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~ 596 (724)
+.++.+|-+-+-|+-.-||.+| ||-|..-...+||--.+++.+-.+..+.|..|- .+-.|.|+---|+
T Consensus 264 sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~en-----mkltrqkadirc~ 338 (1265)
T KOG0976|consen 264 SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLEN-----MKLTRQKADIRCA 338 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 3466666666777777777766 566667777777777777777777777777665 5556666666788
Q ss_pred HHHHHHhhhcccc
Q 004913 597 ILLNRFQACNANL 609 (724)
Q Consensus 597 iL~~rLqEC~~~~ 609 (724)
+|-+|++.-+++-
T Consensus 339 LlEarrk~egfdd 351 (1265)
T KOG0976|consen 339 LLEARRKAEGFDD 351 (1265)
T ss_pred HHHHHHhhcchhH
Confidence 8888877665543
No 147
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.80 E-value=15 Score=45.78 Aligned_cols=202 Identities=17% Similarity=0.146 Sum_probs=110.2
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHH
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeel 476 (724)
.|.--+.++++-..+..|+..-.-+-||+|.-=.+-+.....|++..|+.-+-.-.+...-+-.. .|. +-++
T Consensus 298 ~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~-ke~-------~~~~ 369 (1174)
T KOG0933|consen 298 ALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKL-KEA-------FQED 369 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHH-HHH-------HHHH
Confidence 45555667777777777777777777888776666666666666655554333222221111111 222 2234
Q ss_pred HHHHHHHHHHhccccCCCCcccc-------hhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913 477 RQKSLEMEWKLKSKQDGNPHAES-------MEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF 548 (724)
Q Consensus 477 r~k~~e~E~~lks~~~~~~~~e~-------~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs 548 (724)
..-+-..|+.+.+.-.+.+..+- .+..+....- +.-++...+-.++.+++++...|.+.+.--+--++.++.
T Consensus 370 s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ 449 (1174)
T KOG0933|consen 370 SKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEE 449 (1174)
T ss_pred HHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHH
Confidence 55555555566655333333222 2222222222 555777777788888888887777665544444555555
Q ss_pred HhhhhHHH---HHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 004913 549 LRSSQIGL---KQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAE 612 (724)
Q Consensus 549 LR~s~~~l---k~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~e 612 (724)
|+..+.+. ++.|.-+=-+-...|.+.++.+ .-+....+|..+...|.+|| -||.|-|-
T Consensus 450 ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~----~l~~~~~~lk~~~~~l~a~~--~~~~f~Y~ 510 (1174)
T KOG0933|consen 450 LDALQNEVEKLKKRLQSLGYKIGQEEALKQRRA----KLHEDIGRLKDELDRLLARL--ANYEFTYQ 510 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh--cccccccC
Confidence 55544432 2222222222233344444433 34455677888888888888 77777654
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.79 E-value=11 Score=40.18 Aligned_cols=121 Identities=25% Similarity=0.331 Sum_probs=73.6
Q ss_pred HHhhhhhhHHHHHHHHHhhH--HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-
Q 004913 433 LMTKVKDLEVELETTKQKSK--ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN- 509 (724)
Q Consensus 433 L~tKvkDlE~eLe~t~~~~k--e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~- 509 (724)
|-+.|+.+|.+|..++.+-+ +..+-||-++|| +..++-+|..+-+..-..|. ....+..+.+
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e-~~aL~~E~~~ak~r~~~le~--------------el~~l~~~~~~ 121 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKLSAVKDERE-LRALNIEIQIAKERINSLED--------------ELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 45667777777766655432 233356666554 34444444433333333322 2344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
+..++...++.+..+.+...+.++.....++.+-++...+...-.+|+.++..-+-.+.
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y 180 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEY 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66677777777777777777777777777777777777777777777777766554443
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.27 E-value=8 Score=42.62 Aligned_cols=161 Identities=23% Similarity=0.293 Sum_probs=107.8
Q ss_pred ecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh
Q 004913 390 IPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM 469 (724)
Q Consensus 390 lp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m 469 (724)
.|...-..|-.+|.-...+--..+++.++|-.||+-.--==..|-.++.+..+.-...-.. ... .|||.+-.
T Consensus 62 ~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~-----~ere~lV~- 133 (319)
T PF09789_consen 62 PPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFP-----HEREDLVE- 133 (319)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccc-----hHHHHHHH-
Confidence 3445667888889888888889999999998888754433346777777777766544322 111 77876554
Q ss_pred hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913 470 QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF 548 (724)
Q Consensus 470 qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs 548 (724)
.+|.++.++.++|..+++. ..|++ +..|-|+.+..++-|..+..-+= ..|..-+| -|=+
T Consensus 134 --qLEk~~~q~~qLe~d~qs~--------------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L---~g~~~riv-DIDa 193 (319)
T PF09789_consen 134 --QLEKLREQIEQLERDLQSL--------------LDEKEELVTERDAYKCKAHRLNHELNYIL---NGDENRIV-DIDA 193 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCcc-cHHH
Confidence 5799999999999888765 55667 88899999999999988775542 22222222 3444
Q ss_pred HhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 549 LRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 549 LR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
|-..+.-|++.+.+.-.|+.-+...|.+=|
T Consensus 194 Li~ENRyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 194 LIMENRYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555556666666666655555555
No 150
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.26 E-value=7.3 Score=46.93 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=64.0
Q ss_pred hhhHhHHHHHHHHH-HhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhh-Hhhhhhhhc
Q 004913 395 RHKLSRVLLTMERR-LVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSER-ERLTQMQWD 472 (724)
Q Consensus 395 r~kl~rvl~t~~~r-l~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~Er-Er~t~mqwd 472 (724)
.+-|.+....+..+ +.-...=.+.+-.|+++-.+-++--..++.+|+.+++..+.+. + .|+|| |++...|+.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~a-e-----~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESA-E-----KLAERYEEAKDKQEK 611 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHH
Confidence 33444444444333 2323333445555555555556666666666666655553222 1 12222 344444443
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKAD 538 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad 538 (724)
|.+++..+=..++..+- .-...|++..+||+.++.++..|+...+++-+|...+
T Consensus 612 ---L~~R~~~vl~~l~~~~P---------~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 612 ---LMKRVDRVLQLLNSQLP---------VLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred ---HHHHHHHHHHHHhccCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333223322211 2344567778888888888888887777765555444
No 151
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.22 E-value=27 Score=38.54 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH--------HHhhHhhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913 425 QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAI--------LSERERLTQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 425 qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~--------l~ErEr~t~mqwdmeelr~k~~e~E~~lks 489 (724)
......+||...++.++.+|+...++-..=-++-- -.+-.++.+++=.+...+.+..+.+.++..
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 240 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG 240 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445666666666665555554443322111111 111344555555555566666666655543
No 152
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.11 E-value=2.6 Score=49.86 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=40.8
Q ss_pred HHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh---hHHHHHHHHHH
Q 004913 404 TMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILS 461 (724)
Q Consensus 404 t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~---~ke~lqQa~l~ 461 (724)
+.|.||....-|+|-|+--..=-..--+-=-.|++|||+-|+.-++| ..|-|||-.+.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqells 168 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLS 168 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHh
Confidence 67899999999999987543211111122346999999999988776 45778887776
No 153
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.67 E-value=24 Score=43.57 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=87.4
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHh------hhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH------HHHHHHhhHh
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRL------NQEMTVKDYLMTKVKDLEVELETTKQKSKETL------QQAILSERER 465 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRL------nqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l------qQa~l~ErEr 465 (724)
+-+++..-++|+.+.+.-+++|-.-| +|+-.+-+ .++++....|..++..+..-. +--+++=..|
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~---eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~r 425 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQ---EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENR 425 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666778888888888886544 44443332 277777777777765442221 1112222333
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc--------
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKA-------- 537 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakska-------- 537 (724)
+..|-=-..+||++-.+|=.|+.-.+--....+. ++. ++.++.....++||.++.+.+.+|+|-..
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~---s~~---~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ---SID---DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333445555555554444333111111111 111 13333444444555555555554444433
Q ss_pred ---------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913 538 ---------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 538 ---------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E 571 (724)
+.+.|-.++++++.++....+++...+++|--+-
T Consensus 500 ~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 500 RQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445666778888888888888888888886443
No 154
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.29 E-value=5.1 Score=43.69 Aligned_cols=192 Identities=14% Similarity=0.172 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHHhhhhh--hHHHHHHhhhhhhHHHHHHHHHhhHHHH---HHHHHHhhHhhhhhhhcH
Q 004913 399 SRVLLTMERRLVTAKTDMEDLITRLNQEM--TVKDYLMTKVKDLEVELETTKQKSKETL---QQAILSERERLTQMQWDM 473 (724)
Q Consensus 399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~--avk~fL~tKvkDlE~eLe~t~~~~ke~l---qQa~l~ErEr~t~mqwdm 473 (724)
...-.-|.+++..-+-=..++-+..+.+- =.|+|.+.= -|.=..+....+.-|..- -.++| ..|-|
T Consensus 69 ~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~-~d~r~lm~~Qf~lvK~~aRl~ak~~W--------YeWR~ 139 (312)
T smart00787 69 QFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSAS-PDVKLLMDKQFQLVKTFARLEAKKMW--------YEWRM 139 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 44556677777777765555544444333 367887541 111111222222222211 12223 24544
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s 552 (724)
-=+.-=-...+.++...+.+.....-..+.+..-.. +.+.....+.++..|++..++++.--..+.+-|-.+++.+-..
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 333322233333333333333333333333333344 6667777777788888888877765555555555555555555
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
++..++++.+.-.+..+++..|.. ...-..++..+++-+...+.+|.
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~-------~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIED-------LTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555444444444444433 22334455556666666666663
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.84 E-value=4.4 Score=38.54 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=71.2
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHH
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQE 513 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qe 513 (724)
.++..|+.++.+.+...... .+.+..++=|++.....+.+.+.+|..+ . ..+. ..+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~--------~~~~~~~~~dl~~q~~~a~~Aq~~YE~E--------l------~~Ha~~~~~ 60 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDA--------EEQLQSLREDLESQAKIAQEAQQKYERE--------L------VKHAEDIKE 60 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H------HHhHHHHHH
Confidence 45666777776665544433 3455566667777888888887777655 1 2222 5666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 514 LDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLH 593 (724)
Q Consensus 514 l~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllh 593 (724)
|..+|+++..++.+..++ |.+-...+.+|.+.-..+.+.+..|..|....+ .-...|-+
T Consensus 61 L~~lr~e~~~~~~~~~~l------------------~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~---~r~~dL~~ 119 (132)
T PF07926_consen 61 LQQLREELQELQQEINEL------------------KAEAESAKAELEESEASWEEQKEQLEKELSELE---QRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 777776666665444443 333334444445555555555555555543222 22344555
Q ss_pred HHHHHHHHHhh
Q 004913 594 ECRILLNRFQA 604 (724)
Q Consensus 594 ec~iL~~rLqE 604 (724)
-=.+||++|+.
T Consensus 120 QN~lLh~QlE~ 130 (132)
T PF07926_consen 120 QNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHhh
Confidence 55677777653
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.80 E-value=6.8 Score=44.34 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=34.7
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH----HHHHHHHHhHHHHHHHHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK----QELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk----~el~~~~~eK~e~E~~l~~ 576 (724)
..+.+++- .+|+|..+.+|..+|+.+...|-+ ++.-|.-+--||-+++.+|. |-.++-+.=|.+.++|=|+
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~----qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~ 201 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAE----QRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE 201 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 555555555555555544443322 12223333334444444444 2223334445556666666
Q ss_pred HHHh
Q 004913 577 ERQT 580 (724)
Q Consensus 577 Er~~ 580 (724)
++.-
T Consensus 202 ~~~l 205 (499)
T COG4372 202 AQNL 205 (499)
T ss_pred HHHH
Confidence 6643
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.66 E-value=16 Score=43.03 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------cccchhHHHHHHHHHhhhhHHHHHHHHHHHHh----------HHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAK-------SKADIKVLVKEVKFLRSSQIGLKQELSQMLNE----------KSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEak-------skad~KvLvKEVKsLR~s~~~lk~el~~~~~e----------K~e~E~ 572 (724)
+.+++...+.+++.+++++.+++.+ ...++.-|.++++.|+....+.++++.++... -.++..
T Consensus 228 l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~ 307 (650)
T TIGR03185 228 LAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKA 307 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHH
Confidence 3344444444444444444444443 33445566667777777777777777665522 245556
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 573 LLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 573 ~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
.|..|++.. +.......|..--+-|+.++
T Consensus 308 q~~~e~~~~-~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 308 QLQKEEQSQ-QNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 666666443 44344443334334444444
No 158
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.63 E-value=14 Score=44.01 Aligned_cols=97 Identities=9% Similarity=0.163 Sum_probs=45.5
Q ss_pred eEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHH-------HHHHHHHhhHHHHHHHH
Q 004913 387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEV-------ELETTKQKSKETLQQAI 459 (724)
Q Consensus 387 ~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~-------eLe~t~~~~ke~lqQa~ 459 (724)
.|-+=..--.+-.+|++++=+-...-. +-.|........+||...+.++.. +|+.-|+++....-+..
T Consensus 158 ~Is~~~~dP~~Aa~iaN~la~~Y~~~~-----~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~ 232 (754)
T TIGR01005 158 AIEFRSEDPKLAAAIPDAIAAAYIAGQ-----GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNA 232 (754)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCc
Confidence 334444445556666666544443221 223344445566777666555555 45555555444332221
Q ss_pred HHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 460 LSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 460 l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
...-++++.+.=.+...+.+..+.+..++
T Consensus 233 ~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 233 TLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124455544444444444444444443
No 159
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.51 E-value=53 Score=39.12 Aligned_cols=209 Identities=18% Similarity=0.213 Sum_probs=117.3
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH---------HhhHHHHHHHHHHhhH
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK---------QKSKETLQQAILSERE 464 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~---------~~~ke~lqQa~l~ErE 464 (724)
+...|...|..+..++....++|++|-+.+.|-..=.+=.......||.+++--+ .++-+.||..|=.-.+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3456788888888999999999998887777666555555566666676665321 3444666777777788
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhccccCCCCc----ccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKSKQDGNPH----AESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI 539 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks~~~~~~~----~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~ 539 (724)
|+-.|+=.+|..|..+.+--..|+...+.+.. .-...+.+.++.+ +.+|+....+.+..|.++|+.+--. ..+
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~R 486 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNR 486 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCH
Confidence 88888655567777766655555554332221 1112233344444 4445555555555555544443221 222
Q ss_pred hHHH----HHHHHHhhhhHHHHHHHH--------------HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004913 540 KVLV----KEVKFLRSSQIGLKQELS--------------QMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNR 601 (724)
Q Consensus 540 KvLv----KEVKsLR~s~~~lk~el~--------------~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~r 601 (724)
.--+ -=||++|.|..++.+-|+ ++...-+-++.+|=++-.+-+.++.|= |+|..+.-.|+.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaY-K~La~lh~~c~~ 565 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAY-KLLASLHENCSQ 565 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHH
Confidence 2221 225666666655544443 222233445566666666666665553 444455555555
Q ss_pred Hhhh
Q 004913 602 FQAC 605 (724)
Q Consensus 602 LqEC 605 (724)
|-+|
T Consensus 566 Li~~ 569 (594)
T PF05667_consen 566 LIET 569 (594)
T ss_pred HHHH
Confidence 5444
No 160
>PF13514 AAA_27: AAA domain
Probab=89.49 E-value=13 Score=46.43 Aligned_cols=175 Identities=24% Similarity=0.313 Sum_probs=70.5
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh--hHHHHHHHHHHhhHhhhhhhhc
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK--SKETLQQAILSERERLTQMQWD 472 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~--~ke~lqQa~l~ErEr~t~mqwd 472 (724)
...+.+-+..|++.+.+-......|+.++.......... ..|..|...|+..++. ..+.+++.+-.-++.+.+.+=.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~-~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~ 823 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE-EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEE 823 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554445555555554432222111 4555555555555433 2223333333334444443333
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccc-hhhhhHHHHh-HHHHHHHHHHHHHHHHHH--HHHHhhhc-ccchhHHHHHHH
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAES-MEESTVKDKN-VLQELDATKEQLENLSKR--YEELEAKS-KADIKVLVKEVK 547 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~-~~~s~~~e~~-~~qel~~~~~~~e~l~k~--~~elEaks-kad~KvLvKEVK 547 (724)
++.++.+..++-....-. ...+. .......+.. +.+++...+.+++..... ..++++.. ..+..-|..++.
T Consensus 824 l~~~~~~l~~L~~~a~~~----~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~ 899 (1111)
T PF13514_consen 824 LEELEAELAELLEQAGVE----DEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELE 899 (1111)
T ss_pred HHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHH
Confidence 333333333221111100 00011 0111122223 556666666665433321 22222211 124444445555
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 548 FLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 548 sLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
.|......|.+++.+...+..+++.-|
T Consensus 900 ~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 900 ELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444444333
No 161
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.49 E-value=47 Score=39.72 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=52.0
Q ss_pred hhhcHHHHHHHHHHHHHHhccccCCCCcccch----hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 004913 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESM----EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS-------- 535 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~----~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks-------- 535 (724)
||=-.+++-.+...|...++--+.+-...+.. ...-..|-. ++.+|+.+++-+..|+.+.+.+.-+.
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444555556666655555444444433333 222233444 77788888877777776666554321
Q ss_pred -----------------ccchhHHHHHHHHHhhhhHHHH
Q 004913 536 -----------------KADIKVLVKEVKFLRSSQIGLK 557 (724)
Q Consensus 536 -----------------kad~KvLvKEVKsLR~s~~~lk 557 (724)
-..++-|+.+|+.+++|+.++.
T Consensus 274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~ 312 (629)
T KOG0963|consen 274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER 312 (629)
T ss_pred hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246778899999988876543
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.47 E-value=4.8 Score=41.16 Aligned_cols=94 Identities=21% Similarity=0.309 Sum_probs=67.0
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh------hhcccc
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE------AKSKAD 538 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE------akskad 538 (724)
|..|-=+|+++|.+....+.-+ ..+..|+. +.+-|..+++.++.|+++....+ +.+|+-
T Consensus 29 IksLKeei~emkk~e~~~~k~m--------------~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLM--------------AEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666665555433 44566666 66667777777766666655544 246788
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL 573 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~ 573 (724)
.+++-++++.|+-.+..|++...+.-.|+.++.+-
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998887643
No 163
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.41 E-value=34 Score=36.84 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL-LQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~-l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
+-.++.++++...++++++.++-.+......- +.+..+....+.....++-.+...++.+|..|.+.=+
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence 33444444444444444444433322222211 1122223344455566666777888888888876544
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.40 E-value=4.8 Score=43.72 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
.+|+=..++....+..|...|+..+.+....+. ..++.+++..++++-+.|.+++.++|. +...|.+|+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~-------~~~~~~el~~le~Ee~~l~~eL~~LE~----e~~~l~~el 80 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEEESDSEED-------IEELEEELEKLEQEEEELLQELEELEK----EREELDQEL 80 (314)
T ss_dssp ------------------------------HH---------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 345555666677777777777666521111111 111455555555555555555555553 345667788
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCce
Q 004913 547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNV 617 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~ 617 (724)
+.|.....+|+++-.++.++.+.+..-+.+=.+..+-..+...-.......|+ |.--+|--|-+..+|.+
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~-ktNv~n~~F~I~hdG~f 150 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR-KTNVYNDTFHIWHDGPF 150 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-T--TTTTT--EEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhceeeEeecCCe
Confidence 88888888888888888888888776665443333333333333333333332 23345556666666654
No 165
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=89.04 E-value=9.9 Score=31.86 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=71.7
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
+-+++-++++|-.=+.++|..|.+..-+... ........+.. +.+++...+..++.+......|....-.+...+-+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~--~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDL--EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 3456678899999999999999655443332 33355666666 99999999999999999999996666677788888
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 004913 545 EVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~ 563 (724)
.+..|...-..|.+.+.+.
T Consensus 81 ~~~~l~~~w~~l~~~~~~r 99 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEER 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887776666555443
No 166
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.61 E-value=33 Score=43.18 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
.|++.+++-|..+..++.+++++.+ ..++-+-++|+-|+.+...+++++.+.
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444322 344455566666666666666666333
No 167
>PRK01156 chromosome segregation protein; Provisional
Probab=88.53 E-value=55 Score=39.84 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
+.+-|-+++++|......+.++++.
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~~~~~~ 388 (895)
T PRK01156 364 DYNSYLKSIESLKKKIEEYSKNIER 388 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3334444444444444444443333
No 168
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.41 E-value=88 Score=40.24 Aligned_cols=22 Identities=9% Similarity=0.398 Sum_probs=11.2
Q ss_pred HHHHHhhhhcchHHHHHHhhhhh
Q 004913 405 MERRLVTAKTDMEDLITRLNQEM 427 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaRLnqe~ 427 (724)
+.....+.+ +.|++++-|++++
T Consensus 453 ~~~~~~~~~-~~~~~~keL~e~i 474 (1317)
T KOG0612|consen 453 LDEKCQAVA-ELEEMDKELEETI 474 (1317)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHH
Confidence 333333333 5666666666554
No 169
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.33 E-value=58 Score=38.11 Aligned_cols=175 Identities=26% Similarity=0.368 Sum_probs=95.8
Q ss_pred hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhcccc
Q 004913 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ 491 (724)
Q Consensus 412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~ 491 (724)
.....+.|...|-.|+..|.|....++.+..-|+..+..+++-.. |=+|+.+ ++
T Consensus 283 i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~-----e~~~v~~--------------------sY- 336 (560)
T PF06160_consen 283 IEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE-----ELERVSQ--------------------SY- 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--------------------hc-
Confidence 334444555566678999999999999999998888887765433 3334333 11
Q ss_pred CCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchh---HHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 492 DGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIK---VLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 492 ~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~K---vLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
...+++ ++....+.++++.+.+.+..+......... .+..+++.+..+ |++.-++-.
T Consensus 337 ------------~L~~~e-~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~-------l~~ie~~q~ 396 (560)
T PF06160_consen 337 ------------TLNHNE-LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQ-------LEEIEEEQE 396 (560)
T ss_pred ------------CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 000000 112233344555555555555544443332 233344444444 444444444
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHH
Q 004913 569 KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEA 645 (724)
Q Consensus 569 e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEa 645 (724)
++...|+.=+.....|+..-.+|--+++..+.+++-.|+.=+ |.+-++++...-+.|.-|-++.
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl-------------p~~y~~~~~~~~~~i~~l~~~L 460 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL-------------PEDYLDYFFDVSDEIEELSDEL 460 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333345555555666666677777777665433 6677777777777776554443
No 170
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.23 E-value=41 Score=36.27 Aligned_cols=207 Identities=21% Similarity=0.232 Sum_probs=115.2
Q ss_pred hcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh-hh---cHHHHHHHHHHHHHHhc
Q 004913 413 KTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM-QW---DMEELRQKSLEMEWKLK 488 (724)
Q Consensus 413 ktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m-qw---dmeelr~k~~e~E~~lk 488 (724)
|+-+++|-.+.+.=.-.-.-|...+.|.| ++|-.+-++-|||-=.- +-.+.-+ .| .++..+..++++|.+..
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE---~st~~~Vr~lLqqy~~~-~~~i~~le~~~~~~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTE---DSTALKVRKLLQQYDIY-RTAIDILEYSNHKQLQQAKAELQEWEEKEE 80 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHH---hhHHHHHHHHHHHHHHH-HHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333444455555 35556666666652111 1111111 23 36777888888888776
Q ss_pred cccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHhhhhHHHHHHHHHHHH-
Q 004913 489 SKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA-DIKVLVKEVKFLRSSQIGLKQELSQMLN- 565 (724)
Q Consensus 489 s~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska-d~KvLvKEVKsLR~s~~~lk~el~~~~~- 565 (724)
+. ...+.++-+ +-.++..++++|.-|+--. +-|==.|+ +|--|++.|..|+.+|..=-.+|+...+
T Consensus 81 ~~----------l~~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~ 149 (258)
T PF15397_consen 81 SK----------LSKLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQM 149 (258)
T ss_pred hH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 466777777 7778888888888887322 24444556 7888999999999888766666666553
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HhhhcccccccccCceecccCChhhHHHhhcccchhHHH
Q 004913 566 EKSKTEELLQQERQTHNHMKTVREKLLHECRILLNR-----FQACNANLYAEEEDNVILESSSAADALALLTSSDDQISL 640 (724)
Q Consensus 566 eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~r-----LqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~l 640 (724)
+-..+++-.+..++..-.+-+...---|.=+++..= ++.|-+-|- .+ -+.+. +.|..
T Consensus 150 el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r-----e~-------i~el~------e~I~~ 211 (258)
T PF15397_consen 150 ELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR-----EE-------IDELE------EEIPQ 211 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-----HH-------HHHHH------HHHHH
Confidence 344555555555554444322222211222222222 233433332 11 12233 89999
Q ss_pred HHHHHhhhhhhh
Q 004913 641 LITEAQLLAEDS 652 (724)
Q Consensus 641 LlaEaqll~~d~ 652 (724)
|-||++-|..+-
T Consensus 212 L~~eV~~L~~~~ 223 (258)
T PF15397_consen 212 LRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHhh
Confidence 999999995554
No 171
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.06 E-value=70 Score=40.94 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHHHCCCCCCCCCCCCc--ccCCC-C--HHHHHH------------HHHHHHHHHHHHhcccCCCCCHH---HhhccCc
Q 004913 101 DLKKAFPKKNIPPAPPKG--LLRMK-S--RALLEE------------RRCSLEEWMTKLLSDIDLSRSVS---VASFLEL 160 (724)
Q Consensus 101 ~Lkk~fP~~~LPpLPPKk--~fg~~-s--~eFLEE------------RR~gLEkYLqrLLshP~Ls~S~~---L~sFLEl 160 (724)
..+.+++...+-||-+.. +.|-+ + ..+|+. |...|-..+..=..||.+..|.. |+.|...
T Consensus 93 NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l~SCsV~vhFq~iiD~ 172 (1293)
T KOG0996|consen 93 NFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNLQSCSVEVHFQKIIDK 172 (1293)
T ss_pred hhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCCcceeEEEeeeeeecc
Confidence 345666666777776653 44422 1 134432 66677777777778998876644 4444444
Q ss_pred c
Q 004913 161 E 161 (724)
Q Consensus 161 E 161 (724)
+
T Consensus 173 ~ 173 (1293)
T KOG0996|consen 173 P 173 (1293)
T ss_pred C
Confidence 3
No 172
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.03 E-value=49 Score=43.35 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=17.5
Q ss_pred cchhhHhHHHHHHHHHHhhhhcchHHHHHHhh
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLN 424 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLn 424 (724)
..+.+-.+.|...+.++......+++|-.||.
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~ 324 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAES 324 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544
No 173
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.01 E-value=34 Score=41.93 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 565 NEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 565 ~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
+.++|+|++|.-=+ .+...+-..=-+|.-|-..|.+|.....
T Consensus 566 kaq~EVERLl~~L~----~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 566 KAQAEVERLLDILR----EAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 33788888875322 2333344444577778888877777664
No 174
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.89 E-value=48 Score=36.65 Aligned_cols=209 Identities=12% Similarity=0.186 Sum_probs=100.6
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhh------hhH---HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh-hHhh
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQE------MTV---KDYLMTKVKDLEVELETTKQKSKETLQQAILSE-RERL 466 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe------~av---k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E-rEr~ 466 (724)
...+.+.-++.|+..++.+++..=.+|+.- ++. .++...++.+|+..|...+.+-.+...+.--.+ .+-+
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDAL 247 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 344566667777777777777665555431 111 234556777777777666543322211110000 0000
Q ss_pred hhh--hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 467 TQM--QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 467 t~m--qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
..+ .=-+..|++++.+.|..+......-+..-+....+.. ++..+++++ .++...+....+++...+..
T Consensus 248 ~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~------~i~~l~~~l---~~e~~~~~~~~~~~~~~~~~ 318 (444)
T TIGR03017 248 PEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQA------EINSLKSQL---NAEIKKVTSSVGTNSRILKQ 318 (444)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 000 1113467888888887777652111111111122222 233333322 22233344444445556667
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCCh
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSA 624 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~ 624 (724)
.++.|+.+..++++++..+-....+.+. |++|.+ +.++++ ..|.+|++|-.+..-.+..+--+|++-.+
T Consensus 319 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~-L~r~~~-------~~~~~y---~~ll~r~~e~~l~~~~~~~~~~Vi~~a~~ 387 (444)
T TIGR03017 319 REAELREALENQKAKVLELNRQRDEMSV-LQRDVE-------NAQRAY---DAAMQRYTQTRIEAQSNQTDISILNPAVP 387 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHH---HHHHHHHHHHHHHhccCCCceEeeCCCCC
Confidence 7777777777777666655554444432 333332 222222 35667777776665555455555555443
Q ss_pred h
Q 004913 625 A 625 (724)
Q Consensus 625 ~ 625 (724)
+
T Consensus 388 P 388 (444)
T TIGR03017 388 P 388 (444)
T ss_pred C
Confidence 3
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.87 E-value=10 Score=37.26 Aligned_cols=97 Identities=26% Similarity=0.314 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhH
Q 004913 478 QKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQI 554 (724)
Q Consensus 478 ~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~ 554 (724)
.|...++.+||.-+.++... ...+....-.|+..+.....++.. +|+.+--|--|+=.+.+...
T Consensus 3 ~K~l~v~~kLK~~~~e~dsl-------------e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~ 69 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSL-------------EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN 69 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhH-------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777654333322 223333333333333333333332 34445557777778888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHH
Q 004913 555 GLKQELSQMLNEKSKTEELLQQERQTHNHMKTV 587 (724)
Q Consensus 555 ~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~a 587 (724)
.|..||.....+|..+.+.|++.+++..-=...
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999888765544333
No 176
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=87.85 E-value=22 Score=34.96 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHH
Q 004913 476 LRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~ 555 (724)
|+-.|++.|...+.. ....+++.+ .+ .+.+|||.|-.+|..+=.=-+ -.-|++||.+|-+|..+
T Consensus 67 Lqlhcqeke~eaqrq-----------~~~~~eck~--R~-~fe~qLE~lm~qHKdLwefh~--~erLa~EI~~l~~sKEQ 130 (134)
T PF15233_consen 67 LQLHCQEKESEAQRQ-----------QTLLQECKL--RL-DFEEQLEDLMGQHKDLWEFHM--PERLAREICALESSKEQ 130 (134)
T ss_pred HHHHHHHHHHHhhhh-----------hhhhHhHHH--HH-HHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhHHH
Confidence 555666666555433 223333332 22 456688888877766533223 45699999999999554
Q ss_pred H
Q 004913 556 L 556 (724)
Q Consensus 556 l 556 (724)
|
T Consensus 131 L 131 (134)
T PF15233_consen 131 L 131 (134)
T ss_pred H
Confidence 3
No 177
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.78 E-value=11 Score=35.95 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
++++..||....+++.++.++-.+...+...|...+..=+ .-+..|-.|+..+..|+.+-
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~---~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWE---EQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888777777777666655443222 22344556677777776653
No 178
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.76 E-value=26 Score=41.72 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=96.3
Q ss_pred ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhh
Q 004913 392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQW 471 (724)
Q Consensus 392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqw 471 (724)
..|-+.|+-=|.-||.+|+..--|.=+|...|..|--|+.=|..|+-+|+.+|.+.+.+.+..-+-+..-..++
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~------ 232 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR------ 232 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------
Confidence 35677999999999999999999999999999999999999999999999999999988777765444432221
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR 550 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR 550 (724)
+.+-..++.|...+ +.+..|++ |-.++..-.+.+..|+ --|++.|+......+|.+-.+
T Consensus 233 --dq~~~~Lqqy~a~~--------------q~l~~e~e~L~~q~l~Qtql~d~lq----~eE~q~~~~~E~~~~ELq~~q 292 (617)
T PF15070_consen 233 --DQYLGHLQQYVAAY--------------QQLASEKEELHKQLLQQTQLMDRLQ----HEESQGKVQLEMAHQELQEAQ 292 (617)
T ss_pred --HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHH
Confidence 22444444544332 44555565 4334333222233343 225566666656666665443
Q ss_pred -------hhhHHHHHHHHH
Q 004913 551 -------SSQIGLKQELSQ 562 (724)
Q Consensus 551 -------~s~~~lk~el~~ 562 (724)
.++.+|+..|+.
T Consensus 293 e~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 293 EHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred HHHHHHHhhhHHHHHHHHh
Confidence 444555555553
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.66 E-value=10 Score=45.74 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=100.5
Q ss_pred CCceEEecccchhhHhHHHHHHHHHHhhhh---cchHHHHHHhhhhhhHHHH----HHhhhhhhHHHHHHHHHhhHHHHH
Q 004913 384 GDAELVIPLDQRHKLSRVLLTMERRLVTAK---TDMEDLITRLNQEMTVKDY----LMTKVKDLEVELETTKQKSKETLQ 456 (724)
Q Consensus 384 ~d~~~vlp~d~r~kl~rvl~t~~~rl~~ak---tdmEDLiaRLnqe~avk~f----L~tKvkDlE~eLe~t~~~~ke~lq 456 (724)
....+++|..|+--+--=+.|++.|+.+|+ |+.-|+-+.|+-+.|=|+- +-.|+.-|-.-|+-.-.+....+.
T Consensus 54 lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 54 LQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred HhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 345677777777777777889999999987 5677788888777665543 223444443333333222222222
Q ss_pred HHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHH------------
Q 004913 457 QAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLEN------------ 523 (724)
Q Consensus 457 Qa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~------------ 523 (724)
-+.+- |.=..+|-+|++++.+-..|+. .+.+......+.+ +-+||..+++.++.
T Consensus 134 ae~lp--eveael~qr~~al~~aee~~~~-----------~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtv 200 (916)
T KOG0249|consen 134 AETLP--EVEAELAQRNAALTKAEEHSGN-----------IEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTV 200 (916)
T ss_pred hhhhh--hhHHHHHHHHHHHHHHHHhhcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 11111 2223456666666655444332 2334455555555 55566666654432
Q ss_pred ---HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913 524 ---LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581 (724)
Q Consensus 524 ---l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~ 581 (724)
|+-+..|. ++++-++..|-.|+.+++++..++..+.++.-.+ -|++.++++|..
T Consensus 201 dErlqlhlker-maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d---~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 201 DERLQLHLKER-MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTD---IEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Confidence 12222222 3445566777777777777777776666665443 355566666555
No 180
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.47 E-value=89 Score=39.24 Aligned_cols=105 Identities=28% Similarity=0.387 Sum_probs=61.2
Q ss_pred hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-
Q 004913 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK- 490 (724)
Q Consensus 412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~- 490 (724)
.||.|| |-..|+||+.+|||.|.|-+|--.. +-|=||+.+=-=-++|+|.|.|+--.-|+-+
T Consensus 223 skte~e---------------Lr~QvrdLtEkLetlR~kR~EDk~K--l~ElekmkiqleqlqEfkSkim~qqa~Lqrel 285 (1243)
T KOG0971|consen 223 SKTEEE---------------LRAQVRDLTEKLETLRLKRAEDKAK--LKELEKMKIQLEQLQEFKSKIMEQQADLQREL 285 (1243)
T ss_pred ccchHH---------------HHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888 6666999999999999998876444 3344444332223566777766654444433
Q ss_pred cCCCCcc-----------------cchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh
Q 004913 491 QDGNPHA-----------------ESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 491 ~~~~~~~-----------------e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa 533 (724)
++.+--. ..+.+=+.-+|+ ..+..+..+..||.|+++.+|+|.
T Consensus 286 ~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet 346 (1243)
T KOG0971|consen 286 KRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET 346 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000 001112223444 455666777777777777777764
No 181
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.44 E-value=0.47 Score=56.10 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh----HHHHHHHHHHHHHHHHHH
Q 004913 452 KETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN----VLQELDATKEQLENLSKR 527 (724)
Q Consensus 452 ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~----~~qel~~~~~~~e~l~k~ 527 (724)
.+.|++=+..-+-++.. ||.++.++.++|...+..+++...-..-.+..-.+.. +...+...|...-.|..+
T Consensus 283 ~elLeEe~~sLq~kl~~----~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek 358 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLER----LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEK 358 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344434333344443 4666777776666666555554433332222111111 445555555555555555
Q ss_pred HHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 528 YEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 528 ~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
++++++ +|+.|+....+|..|+.++..+-.+++.-+..-+....+..--+.=+..||..||+.|...-
T Consensus 359 ~g~~~~-----------~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 359 LGSLQS-----------ELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555543 45556666666666666665555555554443333222222333345689999999998743
No 182
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.32 E-value=61 Score=37.23 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 517 TKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 517 ~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
-++.+.-+.++...++++.-+++.-.-+..+.|+.....|++++.
T Consensus 197 q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444444555555555555555555555555555555555544
No 183
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.92 E-value=56 Score=42.23 Aligned_cols=114 Identities=12% Similarity=0.159 Sum_probs=66.7
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCc---ccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPH---AESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD 538 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~---~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad 538 (724)
.+.+.+..=.++++++.+.+....++....-... .....+.+.+..+ ..+++..+++++..++.++.++++...+.
T Consensus 843 ~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~ 922 (1353)
T TIGR02680 843 PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM 922 (1353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556677777777777666655211111 1122233333444 55556666666666666666677766666
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
+.-|-.++..+|....++.+++..+-++...+++-+..
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~ 960 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGR 960 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777777666666555544443
No 184
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.83 E-value=52 Score=35.93 Aligned_cols=202 Identities=16% Similarity=0.263 Sum_probs=118.8
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh-hhhhhhc
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERER-LTQMQWD 472 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr-~t~mqwd 472 (724)
+..++.+=+..+++++.+..-+.+.|.+-++..+.+|+=|-.--+.|-..-...+..++.....---. |.- .+.
T Consensus 37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k-R~el~~k---- 111 (309)
T PF09728_consen 37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK-RKELSEK---- 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----
Confidence 34556677788999999999999999999999999998877666666555544444333221110000 111 111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHH------HHh-------------
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYE------ELE------------- 532 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~------elE------------- 532 (724)
+...+.++...+... . ........||. +.+.+..+-+|+|.-.++++ ++|
T Consensus 112 ---Fq~~L~dIq~~~ee~----~---~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 112 ---FQATLKDIQAQMEEQ----S---ERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred ---HHHHHHHHHHHHHhc----c---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 0 11122344444 44444444444442221111 111
Q ss_pred --hhcccchhHHHH-------HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHH
Q 004913 533 --AKSKADIKVLVK-------EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE-------RQTHNHMKTVREKLLHECR 596 (724)
Q Consensus 533 --akskad~KvLvK-------EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E-------r~~~e~~~~ar~kllhec~ 596 (724)
.+..+..+.+.. .|..|+.+-.+|+..|+-|..-=.+++..|.+= |+-.+...-.-++|=.|+.
T Consensus 182 ~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~ 261 (309)
T PF09728_consen 182 EAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQ 261 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222334444 788888899999999999998878888877653 3344556667788999999
Q ss_pred HHHHHHhhhccccc
Q 004913 597 ILLNRFQACNANLY 610 (724)
Q Consensus 597 iL~~rLqEC~~~~~ 610 (724)
.++.|--.||..++
T Consensus 262 ~~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 262 TWKSKWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHhHHHH
Confidence 99999999999775
No 185
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.74 E-value=25 Score=41.89 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=32.5
Q ss_pred hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhH-HHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTV-KDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~-~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
++=-++++|++..+.|.+|+..+............+. ++.. +-+++..++.+....+.+++.++
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556888888888888887444333322222222 2223 44444444444444444444443
No 186
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=82 Score=38.95 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=82.8
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHH
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQE 513 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qe 513 (724)
.|-+.||.+-|.-+.|-.|.++- .-.|=||.-|++|+- .| .+||--.-..+|.........+..+..|.+ |-..
T Consensus 378 erQReiE~qrEEerkkeie~rEa-ar~ElEkqRqlewEr--ar--~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k 452 (1118)
T KOG1029|consen 378 ERQREIERQREEERKKEIERREA-AREELEKQRQLEWER--AR--RQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK 452 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776664 456688888888852 33 333322222223333333344444444444 3222
Q ss_pred HHHHHHHHHH----HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHH--
Q 004913 514 LDATKEQLEN----LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTV-- 587 (724)
Q Consensus 514 l~~~~~~~e~----l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~a-- 587 (724)
+..+-..|.+ +..+..++|.- ..++..-.-|++-|-....|+.+-|-+..-||.+++.-|.+-. -.-....+
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~-~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q-~a~~~~~~~~ 530 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEV-TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ-SAHKETTQRK 530 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-hhccCcchHH
Confidence 2222222222 22334444432 2234444455555555555666666666666666655442211 11111112
Q ss_pred --HHHHHHHHHHHHHHHhhhcccccccccCc
Q 004913 588 --REKLLHECRILLNRFQACNANLYAEEEDN 616 (724)
Q Consensus 588 --r~kllhec~iL~~rLqEC~~~~~~ee~~~ 616 (724)
..+...+-..+|++|++---++.-|-+.+
T Consensus 531 s~L~aa~~~ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222334456666666555554444433
No 187
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.03 E-value=59 Score=35.77 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=46.4
Q ss_pred hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF 548 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs 548 (724)
-+=+.+.+.+.....|.+.++.+ -++..|.++.|++..++++++...+..+. .+..+-|..|++.
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~----------L~~e~E~~lvq~I~~L~k~le~~~k~~e~-----~~~~~el~aei~~ 169 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSV----------LTPEEERELVQKIKELRKELEDAKKALEE-----NEKLKELKAEIDE 169 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 34456667777777777766651 34455666888888888888887765443 2334444444444
Q ss_pred HhhhhHHHHHHHH
Q 004913 549 LRSSQIGLKQELS 561 (724)
Q Consensus 549 LR~s~~~lk~el~ 561 (724)
||..-.++..++.
T Consensus 170 lk~~~~e~~eki~ 182 (294)
T COG1340 170 LKKKAREIHEKIQ 182 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 188
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.93 E-value=45 Score=37.58 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=11.4
Q ss_pred hHHHHHHhhhhhhHHHHHHH
Q 004913 428 TVKDYLMTKVKDLEVELETT 447 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t 447 (724)
+..+||...++.++.+|+..
T Consensus 161 ~~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667666555555555544
No 189
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.75 E-value=49 Score=41.60 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 567 KSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 567 K~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
|.++|-+..++.+++.+...|++.++ -++++||+-..-.
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i~----~~q~el~~~~~~e 362 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMIL----DAQAELQETEDPE 362 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhcCCcc
Confidence 34555556666666666666666554 5888888866543
No 190
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.74 E-value=0.24 Score=58.45 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHH---HHHHHHhccccCCCCcccchhhhh
Q 004913 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS---LEMEWKLKSKQDGNPHAESMEEST 504 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~---~e~E~~lks~~~~~~~~e~~~~s~ 504 (724)
+.++=+..++..+|.++...++++.+-...| +.+..++=+||+||.+. .-+|..+..+. .=
T Consensus 260 ~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A-----~~a~~LrDElD~lR~~a~r~~klE~~ve~YK-----------kK 323 (713)
T PF05622_consen 260 EQRDDLKIELEELEKEIDELRQENEELQAEA-----REARALRDELDELREKADRADKLENEVEKYK-----------KK 323 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 3444445667777777877777776543332 45666777777777643 33555554441 11
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNH 583 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~ 583 (724)
.++.+ +..++...+++...|.+....+|.+.+.=. -+-..+-.++++..+|++++......+..++.=+.+=+++.+.
T Consensus 324 Led~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 324 LEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 455555555555555566666666655422 2334566667777777777666554444333333332333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004913 584 MKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 584 ~~~ar~kllhec~iL~~rLqE 604 (724)
....+..++.|...|+.++.+
T Consensus 403 l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 403 LEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777666665543
No 191
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.73 E-value=6.8 Score=40.49 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
+.+|+..+++++.++.++.++.-+.-.-..+-+-+++..|++.+.+|++||..+-++-..++.-+...+
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333333333334555666777777777777776666555555544443
No 192
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.15 E-value=32 Score=41.21 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR 550 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR 550 (724)
.++++++++.+.|..|+..+..+..... ..|.+ +++++...+.|+..|+.+..++......+= =+|++|+
T Consensus 275 qL~~l~~~L~~aE~~l~~fr~~~~~~d~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~h----P~v~~l~ 345 (726)
T PRK09841 275 QLPEVRSELDQAEEKLNVYRQQRDSVDL-----NLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDH----PTYRALL 345 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----chHHHHH
Confidence 3444666666677666666443332222 23334 566666677777777766666544322221 1355666
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccC
Q 004913 551 SSQIGLKQELSQMLNEKSKTEELLQQERQT--HNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESS 622 (724)
Q Consensus 551 ~s~~~lk~el~~~~~eK~e~E~~l~~Er~~--~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~s 622 (724)
.+...|++++.++-. ++..+-..|++- -++...+.+.++ ..|.+|.||-.+..-.+..+--+||.-
T Consensus 346 ~~~~~L~~~~~~l~~---~~~~~p~~e~~~~~L~R~~~~~~~lY---~~lL~r~~e~~i~~a~~~~~~rIid~A 413 (726)
T PRK09841 346 EKRQTLEQERKRLNK---RVSAMPSTQQEVLRLSRDVEAGRAVY---LQLLNRQQELSISKSSAIGNVRIIDPA 413 (726)
T ss_pred HHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCceeeccCC
Confidence 666666666655422 233333333322 223333444444 357889999888776665555555543
No 193
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.13 E-value=15 Score=33.37 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR 550 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR 550 (724)
|+.-+|.....+..+++.........+ ....+.++.- +..+++.++.+-..++++...+-.+. .+..-|..|+|.|+
T Consensus 3 Dik~ir~n~e~v~~~l~~R~~~~~~vd-~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk 80 (108)
T PF02403_consen 3 DIKLIRENPEEVRENLKKRGGDEEDVD-EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELK 80 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHcCCCHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 555677777777777766531111111 1123333333 55555555555555555555543333 56666777777777
Q ss_pred hhhHHHHHHHHHHH
Q 004913 551 SSQIGLKQELSQML 564 (724)
Q Consensus 551 ~s~~~lk~el~~~~ 564 (724)
....++.+++.+.-
T Consensus 81 ~~i~~le~~~~~~e 94 (108)
T PF02403_consen 81 EEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666665543
No 194
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.78 E-value=71 Score=37.29 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=112.1
Q ss_pred CcccccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCcccccccccccccCCC---cccccCCceEEecccchhh
Q 004913 321 KVIGHARKLSADSVRSDASSIRGSEISNFGIPNSSADGSPGLHRCAEVSSSREILGNS---DLQFSGDAELVIPLDQRHK 397 (724)
Q Consensus 321 ~~~~h~r~~s~es~~sd~ss~~~se~s~~~~~~~~~d~~~dl~~~~~~~~~~~~~~~~---~~~~~~d~~~vlp~d~r~k 397 (724)
..+.|.+.+..|.+.+-.. .|-.|..||+.+.|+ +..+. |++. ...-.=|+++---
T Consensus 256 ~sv~~qkev~~e~~e~p~~---~s~wspagis~~~~a----------------~~e~c~~~d~eq--s~Eslqpleedma 314 (527)
T PF15066_consen 256 MSVSHQKEVTVEGVESPEI---ASTWSPAGISWSSGA----------------SQEDCKTPDTEQ--SFESLQPLEEDMA 314 (527)
T ss_pred cccchhhhcchhcccCccc---ccCCCCCcccccccc----------------hhhhccCCCHHh--hhhccCCcHHHHH
Confidence 5688888888888866221 222344455432222 22222 2221 1112237788888
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHH
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELR 477 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr 477 (724)
||-||.+|+. ..+.-+-+|.-|.-. .-||-.|||+|-. .++| |-|+. .+|..+-=+||||-
T Consensus 315 LNEvL~kLk~----tn~kQq~~IqdLq~s---N~yLe~kvkeLQ~--k~~k--------Qqvfv--DiinkLk~niEeLI 375 (527)
T PF15066_consen 315 LNEVLQKLKH----TNRKQQNRIQDLQCS---NLYLEKKVKELQM--KITK--------QQVFV--DIINKLKENIEELI 375 (527)
T ss_pred HHHHHHHHHh----hhHHHHHHHHHhhhc---cHHHHHHHHHHHH--Hhhh--------hhHHH--HHHHHHHHHHHHHH
Confidence 9999987664 444455556555443 4599999998853 3333 33443 36666555555542
Q ss_pred HHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH
Q 004913 478 QKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK 557 (724)
Q Consensus 478 ~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk 557 (724)
|-|++ +-+. .+++-.-|...++-+.+-+|++.| ||++++-|-=|||.+......|+
T Consensus 376 ------edKY~--------viLE------Knd~~k~lqnLqe~la~tqk~LqE----sr~eKetLqlelkK~k~nyv~LQ 431 (527)
T PF15066_consen 376 ------EDKYR--------VILE------KNDIEKTLQNLQEALANTQKHLQE----SRNEKETLQLELKKIKANYVHLQ 431 (527)
T ss_pred ------HhHhH--------hhhh------hhhHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhhhHHHHH
Confidence 22322 2232 233444445555666666676654 78889999999999998888887
Q ss_pred HHHHHHHHhH-------HHHHHHHHHHH
Q 004913 558 QELSQMLNEK-------SKTEELLQQER 578 (724)
Q Consensus 558 ~el~~~~~eK-------~e~E~~l~~Er 578 (724)
..-..-|++| .|++++|++-.
T Consensus 432 Ery~~eiQqKnksvsqclEmdk~LskKe 459 (527)
T PF15066_consen 432 ERYMTEIQQKNKSVSQCLEMDKTLSKKE 459 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhhH
Confidence 6655555544 46677766543
No 195
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=84.61 E-value=1e+02 Score=37.14 Aligned_cols=41 Identities=37% Similarity=0.349 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 521 LENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 521 ~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
++.++.-+.+..++++++++-|.+|+|+.+.-..+|+..|.
T Consensus 301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555556666666666666666655555555543
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.59 E-value=20 Score=40.92 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
+++..++++.++.+.+..+|.+-++++-+|++
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~ 119 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQEREQRRRLAE 119 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 197
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.33 E-value=41 Score=34.64 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=18.0
Q ss_pred ceecccCChhhHHHhhcccchhHHHHHHH
Q 004913 616 NVILESSSAADALALLTSSDDQISLLITE 644 (724)
Q Consensus 616 ~~~~~~ss~~da~dlL~tsDnrI~lLlaE 644 (724)
.+.|-+-++.+.-+.....++.|+--|+=
T Consensus 175 ~~~I~~~~lp~~~~~~~~~~~~isaALgy 203 (302)
T PF10186_consen 175 EYTICGLPLPNSRDFNSLPDEEISAALGY 203 (302)
T ss_pred CeeecCcccCCCcccccCCHHHHHHHHHH
Confidence 34444445667667777778888665543
No 198
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.08 E-value=52 Score=40.68 Aligned_cols=27 Identities=19% Similarity=0.529 Sum_probs=14.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 578 RQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 578 r~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+--.++++..|+.-+.-|--+-.|+|.
T Consensus 444 k~Lke~aegsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 444 KVLKEHAEGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred HHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 333455555566556666555555553
No 199
>PRK01156 chromosome segregation protein; Provisional
Probab=84.03 E-value=1.1e+02 Score=37.26 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=38.3
Q ss_pred cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHH
Q 004913 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE 453 (724)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke 453 (724)
|.+.+.-+.+++++= ++.++-..+.+.+..+..+..--+++...+++++.+|+.....-++
T Consensus 148 ~~~r~~~ld~~~~~~--~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~e 208 (895)
T PRK01156 148 PAQRKKILDEILEIN--SLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIAD 208 (895)
T ss_pred HHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555432 3445555566777777777777777777777777777665554444
No 200
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.91 E-value=25 Score=34.34 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHH
Q 004913 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET 454 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~ 454 (724)
.+.|...+.+.+-+|=.|+-+-.-==.-|+.|+.-||.+|+.+..+-++.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333332222222346677777777776665554443
No 201
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.15 E-value=29 Score=44.01 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh-----hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR-----SSQIGLKQELSQMLNEKSKTEELLQQERQTHNHM 584 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR-----~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~ 584 (724)
.+++.+..++..+.+++..+...++.+.-.+-|.++-+..+ -+..+|.|.+.+...+-.++.+-++.+-.+....
T Consensus 56 ~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~ 135 (1109)
T PRK10929 56 WLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREI 135 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555555555566666655555554444444443322222 2468899999999999888888888875444222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 585 KTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 585 ~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
..+-..+=.-..-.+.||||-+..+
T Consensus 136 ~~~l~~~pq~~~~~~~~l~~i~~~L 160 (1109)
T PRK10929 136 SDSLSQLPQQQTEARRQLNEIERRL 160 (1109)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHH
Confidence 2222111122245778888877654
No 202
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.95 E-value=28 Score=34.37 Aligned_cols=87 Identities=24% Similarity=0.228 Sum_probs=64.0
Q ss_pred HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-H
Q 004913 432 YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-V 510 (724)
Q Consensus 432 fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~ 510 (724)
-|+.|+.+=..||...+.++..++|...-. ||....+..++..++..+.+.+..+... ..+.. +
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~-keKl~~~~~~~~~l~~~l~~~~~~~~~~--------------r~~l~~~ 117 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHV-KEKLHFLSEELERLKQELKDREEELAKL--------------REELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 367888888899999999999999877776 9999999999988888888777665544 33334 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004913 511 LQELDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEa 533 (724)
..+.+.++.+...|+.+.+-+.+
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Confidence 44555666666666655555443
No 203
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=82.35 E-value=83 Score=34.53 Aligned_cols=83 Identities=19% Similarity=0.082 Sum_probs=59.7
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhh---------hHHHHHHHHHhhHHHHHHHHHHh---h
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD---------LEVELETTKQKSKETLQQAILSE---R 463 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkD---------lE~eLe~t~~~~ke~lqQa~l~E---r 463 (724)
..+.+.|..+..-....++.-+..-..|+.|..+-+=+-+|-.. +=..|-+.-.+-+..|+||.-.- |
T Consensus 75 ~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~ 154 (339)
T cd09238 75 AALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDESLR 154 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 56677888888888888888888888999999988877777644 44577777788888999987442 3
Q ss_pred HhhhhhhhcHHHHHH
Q 004913 464 ERLTQMQWDMEELRQ 478 (724)
Q Consensus 464 Er~t~mqwdmeelr~ 478 (724)
++|.+..=+++.|..
T Consensus 155 ~k~~~~~~~l~~L~~ 169 (339)
T cd09238 155 RRIEDAMDGMLILDD 169 (339)
T ss_pred HHHHHHHHHHHhcCc
Confidence 444444445555533
No 204
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.20 E-value=1.1e+02 Score=35.73 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
+|....|.-...+|.|+.+.-..-..+|.=|+.=.+..+-++++-+.-+-++.+|...-
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444455555555566666555555665566555666678888888899998876544
No 205
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.85 E-value=40 Score=33.22 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 004913 591 LLHECRILLNR 601 (724)
Q Consensus 591 llhec~iL~~r 601 (724)
.+++...+++|
T Consensus 180 ~~~~~~~l~~~ 190 (191)
T PF04156_consen 180 KIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHhh
Confidence 34444444444
No 206
>PRK10698 phage shock protein PspA; Provisional
Probab=81.78 E-value=61 Score=33.76 Aligned_cols=163 Identities=18% Similarity=0.284 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh----------
Q 004913 400 RVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM---------- 469 (724)
Q Consensus 400 rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m---------- 469 (724)
-++--|+.=++.+++..-.++|.--+...=-+=+...+.++|.--+.-.++.+|.|-...|.++..+...
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555444444444333322222333344455555555556667777777766666554332
Q ss_pred -hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHH-----HHHHHHHHHHHHHHHHHHhhhcccc----h
Q 004913 470 -QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQE-----LDATKEQLENLSKRYEELEAKSKAD----I 539 (724)
Q Consensus 470 -qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qe-----l~~~~~~~e~l~k~~~elEakskad----~ 539 (724)
+=-.+.|..++..++.+|+.-...+...--....+.....+-+. ...+-..|+.+..+.++.||++.|. .
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~ 190 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQ 190 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 11223333333334433333321111111111111111111111 1223346777778888888888774 2
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
+-|-.|+..|.. ..++..||..+
T Consensus 191 ~~l~~e~~~le~-~~~ve~ELa~L 213 (222)
T PRK10698 191 KSLDQQFAELKA-DDEISEQLAAL 213 (222)
T ss_pred CCHHHHHHHhhc-cchHHHHHHHH
Confidence 236666666643 23455555443
No 207
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=81.71 E-value=95 Score=34.76 Aligned_cols=129 Identities=22% Similarity=0.333 Sum_probs=72.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh
Q 004913 430 KDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 430 k~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~ 509 (724)
|..+..=+...=..|.+-.++.-..|.+=|-.-.+--++|+|...+......+||..+... +.++.++.
T Consensus 224 R~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L-----------~~ai~~k~ 292 (384)
T PF03148_consen 224 REDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDL-----------EKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 3333333333333444444444444444444445556677888888888888888777655 55555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~ 572 (724)
- -|..++--|++-..+ =-+|.=--.=-.-|+.||+.|+.+...|++.|.++-.....|.+
T Consensus 293 ~--~lkvaqTRL~~R~~R-P~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 293 G--PLKVAQTRLENRTQR-PNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred h--hHHHHHHHHhhHhcC-CchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333334444432 11222111222458999999999999999988887666555544
No 208
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.64 E-value=28 Score=37.55 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~ 572 (724)
.-.++..+++....++.++.++-.+..+++.
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 231 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQL 231 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555444444433
No 209
>PRK11519 tyrosine kinase; Provisional
Probab=81.58 E-value=51 Score=39.53 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~ 551 (724)
++++++++.+.|.+|+..+..+..... ..|.+ .++.+...+.|+-.++.+..++......+-= .|++|..
T Consensus 276 l~~l~~~L~~aE~~l~~fr~~~~~vd~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP----~v~~l~~ 346 (719)
T PRK11519 276 LPEVRSRLDVAENKLNAFRQDKDSVDL-----PLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHP----AYRTLLE 346 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----HHHHHHH
Confidence 344666666666666666444333322 23333 5555566666666666555555433222110 1334444
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccC
Q 004913 552 SQIGLKQELSQMLNEKSKTEELLQQER--QTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESS 622 (724)
Q Consensus 552 s~~~lk~el~~~~~eK~e~E~~l~~Er--~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~s 622 (724)
+...|+++++++-.+ +..+-..|+ .+-++...+.++++. .|.+|++|-.+..-....+--+||.-
T Consensus 347 ~~~~L~~~~~~l~~~---~~~lp~~e~~~~~L~Re~~~~~~lY~---~lL~r~~e~~i~~a~~~~~~rIid~A 413 (719)
T PRK11519 347 KRKALEDEKAKLNGR---VTAMPKTQQEIVRLTRDVESGQQVYM---QLLNKQQELKITEASTVGDVRIVDPA 413 (719)
T ss_pred HHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhcCCCCCeEEEecC
Confidence 444455544443222 222222222 222333344444443 56788888777766555555555543
No 210
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.45 E-value=23 Score=37.33 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913 553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLq 603 (724)
-+..-+||-+...++..+|.++.+=+.-.++.+..=.++++|+.-|.+.+-
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777777744333333333333556677777766543
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.35 E-value=1.4e+02 Score=36.49 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=34.5
Q ss_pred ecccchh----hHhHHHHHHHHHHhhh---------hcchHHHHHHhhhhhhHHHHHHhhhhhhH
Q 004913 390 IPLDQRH----KLSRVLLTMERRLVTA---------KTDMEDLITRLNQEMTVKDYLMTKVKDLE 441 (724)
Q Consensus 390 lp~d~r~----kl~rvl~t~~~rl~~a---------ktdmEDLiaRLnqe~avk~fL~tKvkDlE 441 (724)
+|.+++. |.++.+..+-+|+..+ |..++|.-.|.-|....++.|-.|++-..
T Consensus 386 ~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k 450 (698)
T KOG0978|consen 386 LLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK 450 (698)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5777888 5555555555544322 35667777777788888888887777654
No 212
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.30 E-value=1.3e+02 Score=37.90 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhcc
Q 004913 593 HECRILLNRFQACNA 607 (724)
Q Consensus 593 hec~iL~~rLqEC~~ 607 (724)
.+...|.+.+.++.-
T Consensus 380 ~~l~~l~~~~~~~~~ 394 (1047)
T PRK10246 380 EQLRQWQQQLTHAEQ 394 (1047)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 213
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.30 E-value=14 Score=42.15 Aligned_cols=240 Identities=16% Similarity=0.242 Sum_probs=125.3
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHH-Hhccc-cCCCCcccchhhhhHHHHh-HH
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW-KLKSK-QDGNPHAESMEESTVKDKN-VL 511 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~-~lks~-~~~~~~~e~~~~s~~~e~~-~~ 511 (724)
.-|..|.-+|.-+||--. +-++.++=-|..+|.|...+-. .+..- -.++++++..+..+..+.+ ++
T Consensus 155 ~el~~lrrdLavlRQ~~~-----------~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~ll 223 (426)
T smart00806 155 AELKSLQRELAVLRQTHN-----------SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLL 223 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHH
Confidence 446677778877777543 3345556667779999887754 24433 5678899999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHhhhhHHHHHHHHHH----HHhH-HHHHHHHHHHHHhhhhHH
Q 004913 512 QELDATKEQLENLSKRYEELEAK-SKADIKVLVKEVKFLRSSQIGLKQELSQM----LNEK-SKTEELLQQERQTHNHMK 585 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEak-skad~KvLvKEVKsLR~s~~~lk~el~~~----~~eK-~e~E~~l~~Er~~~e~~~ 585 (724)
-..|+.|+.+|.|.+.--.==++ ++.+.+...||+..++.....|+.=++.- -+.| +||+++.++...-.-+..
T Consensus 224 tkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 224 TKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753221111 22344555566655555554443322211 1111 455555444332211110
Q ss_pred H--HHHHHHHHHHHHHHHHhhhcccccc---cccCcee-cccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhhh--hh
Q 004913 586 T--VREKLLHECRILLNRFQACNANLYA---EEEDNVI-LESSSAADALALLTSSDDQISLLITEAQLLAEDSKAA--AS 657 (724)
Q Consensus 586 ~--ar~kllhec~iL~~rLqEC~~~~~~---ee~~~~~-~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~~--~~ 657 (724)
- =.++=|..+.--.+=++-|+..-.. .-..+.+ +-.-.++|.. +=..-+|.|++.|-.|+|.- |-
T Consensus 304 L~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~i~~pg~~~-------~~kd~VL~EV~aL~PdHEsRLeAI 376 (426)
T smart00806 304 LIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVSLPVPTPGTFN-------DLKDQVLMEVRALKPDHESRLEAI 376 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCccCCCCCCCChh-------HHHHHHHHHHHccCCChHHHHHHH
Confidence 0 0010011111222223333322110 0000111 1101111211 22345788999999999873 22
Q ss_pred hhhhcccCCCCCccchHHHHHHHHHHHHhhHHHHHH
Q 004913 658 ADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQ 693 (724)
Q Consensus 658 ~~~~~~~~~~~~~~~d~elrk~lad~~idna~LRkq 693 (724)
..+.+.....=..+.-|++.+=|.+ ||+|-+|+|+
T Consensus 377 ErAEklR~kEle~r~~d~Fq~ELg~-FVe~~kLKks 411 (426)
T smart00806 377 ERAEKLREKELEYRRVDEFEKELGN-FVENGKLKKS 411 (426)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHH-HhccCCcccC
Confidence 2333333222223344566677766 7777777764
No 214
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.04 E-value=1.2e+02 Score=35.31 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhcccchhHHHHHHHH--Hh---hh------hHHHHHHHHHHHHhHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELE---AKSKADIKVLVKEVKF--LR---SS------QIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elE---akskad~KvLvKEVKs--LR---~s------~~~lk~el~~~~~eK~e~E~~l 574 (724)
+.+.++..+...+....++.+.- ++...++.-|....|. +. .. +.+|++|....-.+-..++.-|
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554 3333444444444443 22 01 4567777776666666666555
No 215
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.72 E-value=17 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh
Q 004913 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK 450 (724)
Q Consensus 417 EDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~ 450 (724)
|+|..++..-.+=-+.|...+..|+..++...++
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333444455555555555555554443
No 216
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.55 E-value=68 Score=39.93 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHH----------HHHHHHHhccccCCCCcccchhh
Q 004913 433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQK----------SLEMEWKLKSKQDGNPHAESMEE 502 (724)
Q Consensus 433 L~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k----------~~e~E~~lks~~~~~~~~e~~~~ 502 (724)
+.-.|.+||.+++.-+.-..+++.+. | |++-....+++. ..|+|.+....++--.-......
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~-----e---qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t 434 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQ-----E---QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYT 434 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888887766655555432 2 222222222222 23333322221111111112234
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
...+++. +++..+++.+|+|.-++-.+++
T Consensus 435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~ 464 (980)
T KOG0980|consen 435 ELRQEHADLLRKYDDIQKQLESAEQSIDDV 464 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5566666 8888888888888777666633
No 217
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.48 E-value=31 Score=34.06 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=57.0
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHH
Q 004913 427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK 506 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~ 506 (724)
..=++.|--+|--||.+|+.+..+.-..--+|=-. +.-+.-|+=.++.+......++..|.+ ++.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~-k~eie~L~~el~~lt~el~~L~~EL~~--------------l~s 80 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENS-KAEIETLEEELEELTSELNQLELELDT--------------LRS 80 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 34467788899999999998754433333333333 556666676777777777666665544 456
Q ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 507 DKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 507 e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
|++ +.+++...++++..|......+
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666 6666666666666665544443
No 218
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=80.43 E-value=1.5e+02 Score=36.27 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=32.2
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHH----hh---------HhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAILS----ER---------ERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l~----Er---------Er~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.+|.|||+.|-++..+.+....|.--- |+ ..++-++-+-..+.+..+.|-..+|-.
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~ 518 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ 518 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 356677777766666665555543221 11 234445556666677777777766644
No 219
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.28 E-value=1.1e+02 Score=37.73 Aligned_cols=183 Identities=22% Similarity=0.264 Sum_probs=85.2
Q ss_pred HhhhhcchHHHHHHhhhhhhHHH-------HHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHH
Q 004913 409 LVTAKTDMEDLITRLNQEMTVKD-------YLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481 (724)
Q Consensus 409 l~~aktdmEDLiaRLnqe~avk~-------fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~ 481 (724)
+..|-.-..||+.+|.+++-|=. -|-.++.++.+.|+-....+. .||. |++++.-|...-+-++.. ..
T Consensus 504 L~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~-SLqD-v~s~~sEIK~~f~~~ss~---e~ 578 (769)
T PF05911_consen 504 LNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCF-SLQD-VSSMRSEIKKNFDGDSSS---EA 578 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccc-hHHH-HHHHHHHHHHhhhhcccc---cc
Confidence 33333334888888888875522 344456666666666655543 3333 667776666542222111 11
Q ss_pred HHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHh-------
Q 004913 482 EMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA---DIKVLVKEVKFLR------- 550 (724)
Q Consensus 482 e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska---d~KvLvKEVKsLR------- 550 (724)
+.....+.........+...+.+..++. +.-+|....+++|.++-++.|.|.+... +.. +++|-+++-
T Consensus 579 E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~-~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 579 EINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE-SAKESNSLAETQLKAM 657 (769)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1111112222222222333344444444 4444555555555555555555554221 111 222222222
Q ss_pred --------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 551 --------SSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 551 --------~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
.....++.|+.+....-..||.=|.+||+- =..++-.|.-|...|+-
T Consensus 658 ~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 658 KESYESLETRLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHh
Confidence 222233344444444444455555555533 33445567777666653
No 220
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.08 E-value=73 Score=32.80 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=87.5
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh-------
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM------- 469 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m------- 469 (724)
-|+..+--|+.-|..++...-+++|.--+...=-+=+..++.++|.--..-.++..|.|-..++.++..+...
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777778777777777544444444445566677777777777888888888777766544332
Q ss_pred ----hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhhcccch-
Q 004913 470 ----QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQ-----ELDATKEQLENLSKRYEELEAKSKADI- 539 (724)
Q Consensus 470 ----qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~q-----el~~~~~~~e~l~k~~~elEakskad~- 539 (724)
+=-.++|..++.+|+.++..-..-+...-...+.+.....+-+ ....+-..|+-+..+..++||.+.+.-
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~ 187 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL 187 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2334455555555555555442221111010111111111100 123444566666677777777766642
Q ss_pred ---hHHHHHHHHHhhhhHHHHHHHHH
Q 004913 540 ---KVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 540 ---KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
.-|-+|+..|-. ......||..
T Consensus 188 ~~~~~l~~~l~~l~~-~~~vd~eLa~ 212 (219)
T TIGR02977 188 GRKPSLEDEFAELEA-DDEIERELAA 212 (219)
T ss_pred cCCCCHHHHHHHhcC-CChHHHHHHH
Confidence 125555555532 2334444433
No 221
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.00 E-value=39 Score=34.71 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=14.6
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHH
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITR 422 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaR 422 (724)
.|+.=+..|..+....+..|.|+.+.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~e 56 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQE 56 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555566555554
No 222
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.83 E-value=1.3e+02 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=37.5
Q ss_pred hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHH
Q 004913 501 EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGL 556 (724)
Q Consensus 501 ~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~l 556 (724)
...+.+|.+ +.+++...+.|++.|.-+..+.|++...+...+-+.++.+......+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~ 332 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPE 332 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356677777 77777777777777777777777776666666666666555544433
No 223
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.77 E-value=1.3e+02 Score=35.94 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~ 551 (724)
+.-++..+...++-..++-++.-.+.+++++-|.+|+..|--
T Consensus 465 ~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 465 IELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666667777777888888888888888776643
No 224
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.57 E-value=72 Score=35.45 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-------cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHH
Q 004913 451 SKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-------QDGNPHAESMEESTVKDKN-VLQELDATKEQLE 522 (724)
Q Consensus 451 ~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-------~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e 522 (724)
...+|.|.+..=||+-..++=++++||+++.|..--.|.. +.+.-....... ..|.+ +..+|..++++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888888888888887765443222 222222222111 15666 7777777666666
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 523 NLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 523 ~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~ 565 (724)
.|+..+..+- -++--|+.|==..|.--.-|-+||+..+.
T Consensus 144 qLe~d~qs~l----DEkeEl~~ERD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 144 QLERDLQSLL----DEKEELVTERDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6554433221 11222333333344444444555555443
No 225
>PLN02939 transferase, transferring glycosyl groups
Probab=78.95 E-value=1.8e+02 Score=36.86 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=61.9
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHH
Q 004913 427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK 506 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~ 506 (724)
..-|+-|-.||.=||..|..|-.+.|-.-| ++.+.--+-=.+|-||..+.. ....+.++. -++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~ 226 (977)
T PLN02939 162 LTEKEALQGKINILEMRLSETDARIKLAAQ-----EKIHVEILEEQLEKLRNELLI------RGATEGLCV----HSLSK 226 (977)
T ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhh-----ccccchhhHHHHHHHhhhhhc------ccccccccc----ccHHH
Confidence 344667777888888888776555444333 232222222233444443321 112222211 12344
Q ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 507 DKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 507 e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
|.. +.+|--..++.++.|..+..++--. -.-+-+|.||---|.++..+|..-+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLRELESKFIV 282 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 4444444555555565555544221 112446788888888888888776543
No 226
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=78.91 E-value=8.9 Score=43.68 Aligned_cols=237 Identities=15% Similarity=0.230 Sum_probs=66.8
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHH-Hhcc-ccCCCCcccchhhhhHHHHh-H
Q 004913 434 MTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW-KLKS-KQDGNPHAESMEESTVKDKN-V 510 (724)
Q Consensus 434 ~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~-~lks-~~~~~~~~e~~~~s~~~e~~-~ 510 (724)
...|++|.-+|..+||-.... .+.++=.|..||.|...+=. .++. -..++++.+..+..+..+.+ |
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~-----------~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~L 218 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEF-----------QSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRL 218 (424)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 678999999999988854433 33445566668887654222 1111 13567888999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhH-----HHHHHHHHHHHHhhhhH
Q 004913 511 LQELDATKEQLENLSKRYEELEAK-SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEK-----SKTEELLQQERQTHNHM 584 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEak-skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK-----~e~E~~l~~Er~~~e~~ 584 (724)
+..++++++-+|.|.+.--.==++ +..+++-+.||+..+.....+|+.-+...--.+ .||++|..++..-..+.
T Consensus 219 l~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Qe 298 (424)
T PF03915_consen 219 LTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQE 298 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998753221111 223556666777777666666665554433322 46666655544333221
Q ss_pred HHHHHHHHHHHHHH---HHHHhhhccccccc---ccCcee-----cccC-ChhhHHHhhcccchhHHHHHHHHhhhhhhh
Q 004913 585 KTVREKLLHECRIL---LNRFQACNANLYAE---EEDNVI-----LESS-SAADALALLTSSDDQISLLITEAQLLAEDS 652 (724)
Q Consensus 585 ~~ar~kllhec~iL---~~rLqEC~~~~~~e---e~~~~~-----~~~s-s~~da~dlL~tsDnrI~lLlaEaqll~~d~ 652 (724)
.--..|..+|.-+ ..-++.|...-... .-.+.+ ..+. ++.++ -+-+|.|++-|..|+
T Consensus 299 -dL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~----------~~~VL~EV~aL~PDH 367 (424)
T PF03915_consen 299 -DLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEA----------RDQVLGEVRALQPDH 367 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHCT------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhH----------HHHHHHHHHhcCCCc
Confidence 2222333333332 33444454221100 001111 0010 11222 235688999999999
Q ss_pred hhh--hhhhhhcccCCCCCccchHHHHHHHHHHHHhhHHHHHH
Q 004913 653 KAA--ASADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQ 693 (724)
Q Consensus 653 e~~--~~~~~~~~~~~~~~~~~d~elrk~lad~~idna~LRkq 693 (724)
|.- |-..+++...-.=.....|++.+=|.+ ||++-+|+|+
T Consensus 368 E~RLeAIerAEKlRqkele~~~~~~f~~EL~~-FV~~~kLKks 409 (424)
T PF03915_consen 368 ESRLEAIERAEKLRQKELEYRRVDEFQKELGN-FVEEKKLKKS 409 (424)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HhccCccccc
Confidence 873 222233333222234456677777776 8888888875
No 227
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.87 E-value=44 Score=35.30 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s 552 (724)
+-++|.|+.+||....... .+.+.+.+|...++|+....++|..=...|.|-=.+..+||-.|-..||++|+.
T Consensus 3 i~~ir~K~~~lek~k~~i~-------~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEIL-------QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999997655441 112333333335555555555555545555555556678888888888888888
Q ss_pred hHHHHHHHHHHHHhHHH
Q 004913 553 QIGLKQELSQMLNEKSK 569 (724)
Q Consensus 553 ~~~lk~el~~~~~eK~e 569 (724)
....+....+.+.|..-
T Consensus 76 r~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666655544433
No 228
>PRK11281 hypothetical protein; Provisional
Probab=78.85 E-value=1.3e+02 Score=38.60 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=45.8
Q ss_pred cchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhh------HHHH-------HHhhhhhhHHHHHHHHHhhHHHHHHHH
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMT------VKDY-------LMTKVKDLEVELETTKQKSKETLQQAI 459 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~a------vk~f-------L~tKvkDlE~eLe~t~~~~ke~lqQa~ 459 (724)
++..+.+.=...+++++.+|-+.++..-++|...-. -+.| |..++.++|.+|+.....-.+---|.+
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666655444432111 1223 444444444433332222111111112
Q ss_pred HHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 460 LSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 460 l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
-. +.+...-|=-|.+-++..++....|++-
T Consensus 153 ~~-qT~PERAQ~~lsea~~RlqeI~~~L~~~ 182 (1113)
T PRK11281 153 SL-QTQPERAQAALYANSQRLQQIRNLLKGG 182 (1113)
T ss_pred hh-hcchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 21 3333334445666778888888777765
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.73 E-value=1e+02 Score=39.44 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=49.3
Q ss_pred cchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhh-hHHHHHH-hhhhhhHHHHHHHHHh---hHHHHHHHHHHhhHhh-
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLM-TKVKDLEVELETTKQK---SKETLQQAILSERERL- 466 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~-avk~fL~-tKvkDlE~eLe~t~~~---~ke~lqQa~l~ErEr~- 466 (724)
++..+.+.-...+++.+.+|-..++.+-++|..+. ..+.|+. .=..+||..|..+... -++.+++ +-.+.
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~----~~~~~~ 133 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQ----EQDRAR 133 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhH
Confidence 45556666666677777777666666666655321 1122311 1146677666654433 2222222 11222
Q ss_pred ---hhh----hhcHHHHHHHHHHHHHHhccc
Q 004913 467 ---TQM----QWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 467 ---t~m----qwdmeelr~k~~e~E~~lks~ 490 (724)
..+ |=- .+.|+.+++.+..|++.
T Consensus 134 ~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~ 163 (1109)
T PRK10929 134 EISDSLSQLPQQQ-TEARRQLNEIERRLQTL 163 (1109)
T ss_pred HHHHHHhhchhhH-HHHHHHHHHHHHHHhCC
Confidence 111 111 77899999999888885
No 230
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.42 E-value=33 Score=35.38 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 004913 586 TVREKLLHECRILL 599 (724)
Q Consensus 586 ~ar~kllhec~iL~ 599 (724)
..|+.++.|...+.
T Consensus 144 ~~r~~l~~~l~~if 157 (302)
T PF10186_consen 144 RRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666655544
No 231
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.09 E-value=88 Score=32.23 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=43.1
Q ss_pred hcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 534 KSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS-----KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 534 kskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~-----e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+--+++--|.+++-.+..-..+-.+.... |.-+. ...+-|..|+.+.-.+...-..+..||.-|..+|+|
T Consensus 115 knL~eReeL~~kL~~~~~~l~~~~~ki~~-Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 115 KNLAEREELQRKLSQLEQKLQEKEKKIQE-LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544443333332222 11122 234567788888888888889999999999999987
No 232
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.06 E-value=54 Score=39.05 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCC--CCCC-CCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc-hhhhhhhhhhcc
Q 004913 98 LFTDLKKAFPKK--NIPP-APPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE-AAARSSFQDVNQ 173 (724)
Q Consensus 98 Lh~~Lkk~fP~~--~LPp-LPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE-a~aRs~fqd~nq 173 (724)
.-..|..-.|.. .+|+ ||| .+. .| --+-.-|-..|..--...+-.++.||... ...|..|--+-+
T Consensus 38 ~~~cL~~I~p~~~~~l~~~lP~-~ms---------aR-fr~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLie 106 (594)
T PF05667_consen 38 VVRCLRVIDPSLGSSLPRSLPP-GMS---------AR-FRVGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIE 106 (594)
T ss_pred HHHHHHHhCccccCCCcccCCh-HHH---------HH-HHHHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHH
Confidence 445566667754 5554 443 211 11 12223334444444455666677888543 445555444333
No 233
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.00 E-value=1e+02 Score=37.88 Aligned_cols=85 Identities=26% Similarity=0.420 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhcccchhHHHHHHHHHhhhhHHHHHHH---HHHHHhHHHHHHHHHH--HHHhhhhHHH
Q 004913 513 ELDATKEQLENLSKRYE-ELEAKSKADIKVLVKEVKFLRSSQIGLKQEL---SQMLNEKSKTEELLQQ--ERQTHNHMKT 586 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~-elEakskad~KvLvKEVKsLR~s~~~lk~el---~~~~~eK~e~E~~l~~--Er~~~e~~~~ 586 (724)
+|.+++++|..-.|+.. |+++-+|-++|--.|- |..|.+++..| +=.|+.+.++|..|++ |+++.+-+.+
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkq----r~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~i 954 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQ----RKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASI 954 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56778888887776654 8888888888766654 44555555544 4567888888888875 7778888888
Q ss_pred HHHHHHHHHHHHHHH
Q 004913 587 VREKLLHECRILLNR 601 (724)
Q Consensus 587 ar~kllhec~iL~~r 601 (724)
-|.=||..-.+||+|
T Consensus 955 ErecLm~Kq~LlRar 969 (1187)
T KOG0579|consen 955 ERECLMQKQNLLRAR 969 (1187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888876
No 234
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.65 E-value=1.5e+02 Score=34.70 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=7.7
Q ss_pred HHHHHHhhhcccccc
Q 004913 597 ILLNRFQACNANLYA 611 (724)
Q Consensus 597 iL~~rLqEC~~~~~~ 611 (724)
||-.=.|-|..++..
T Consensus 187 i~~~aiqr~a~~~~~ 201 (514)
T TIGR03319 187 ILATAIQRYAGDHVA 201 (514)
T ss_pred HHHHHHHhccchhhh
Confidence 344455666555543
No 235
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.38 E-value=1.6e+02 Score=34.92 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=13.3
Q ss_pred CCCCcc-chHHHHHHHHHHHHhh
Q 004913 666 NDVCTR-TDNELREVIADILVDN 687 (724)
Q Consensus 666 ~~~~~~-~d~elrk~lad~~idn 687 (724)
+|+... .|.+-|+.|+.-++.+
T Consensus 580 iD~p~~~lD~~~r~~l~~~~~~~ 602 (650)
T TIGR03185 580 IDTPLGRLDSSHRENLVVNYFPK 602 (650)
T ss_pred EcCCccccChHHHHHHHHHHhhc
Confidence 444433 6777888877645544
No 236
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=77.21 E-value=1.7e+02 Score=34.95 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=111.3
Q ss_pred HHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 403 LTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 403 ~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
..++.-++..+-.+|+|..=|-.|++.|.+...+..-|=.-|+.++.++.-- +=+.+.+++.+-=
T Consensus 277 d~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L---------------~~Eie~V~~sY~l 341 (570)
T COG4477 277 DEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHL---------------KEEIERVKESYRL 341 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH---------------HHHHHHHHHHhcc
Confidence 3456778888888999999999999999999888888877777776655422 2222334433332
Q ss_pred HHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 483 MEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 483 ~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
-|..+.+- .....+|+-+.+.+....+.. +++..| --.|...|++++.....++.+-..
T Consensus 342 ~e~e~~~v-----------------r~~e~eL~el~~~~~~i~~~~---~~~~~~-yS~lq~~l~~~~~~l~~i~~~q~~ 400 (570)
T COG4477 342 AETELGSV-----------------RKFEKELKELESVLDEILENI---EAQEVA-YSELQDNLEEIEKALTDIEDEQEK 400 (570)
T ss_pred ChhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHh---hccccc-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 22221111 011122222222222222211 111111 235677788888887777777666
Q ss_pred HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHH
Q 004913 563 MLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLI 642 (724)
Q Consensus 563 ~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLl 642 (724)
+-..-..+++ .|.+-++++..-+. .+..+..+++-||.-= -|.+-+.|+.|-+++|.-|.
T Consensus 401 ~~e~L~~Lrk---dEl~Are~l~~~~~----~l~eikR~mek~nLPG-------------lPe~~l~l~~~~~~~i~~l~ 460 (570)
T COG4477 401 VQEHLTSLRK---DELEARENLERLKS----KLHEIKRYMEKSNLPG-------------LPETFLSLFFTAGHEIQDLM 460 (570)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHcCCCC-------------CcHHHHHHHHhhhhHHHHHH
Confidence 5554444443 34444444433333 3344556778888643 48999999999999999888
Q ss_pred HHHhhh
Q 004913 643 TEAQLL 648 (724)
Q Consensus 643 aEaqll 648 (724)
.|..-.
T Consensus 461 ~eLse~ 466 (570)
T COG4477 461 KELSEV 466 (570)
T ss_pred HHHhhc
Confidence 776544
No 237
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=76.44 E-value=1.8e+02 Score=34.99 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD 538 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad 538 (724)
..+..+|. |.++|...++-|-.|+.+.-++.-+--++
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE 193 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 34555666 88888888888877776665554444443
No 238
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.93 E-value=73 Score=40.14 Aligned_cols=191 Identities=19% Similarity=0.204 Sum_probs=111.4
Q ss_pred cchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhc
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWD 472 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwd 472 (724)
.+|+++|-.+...++|..++.+-..||. -|+.-+..-.++|++|.|.-....- -|-
T Consensus 678 ~er~~~~~~~~~~~~r~~~ie~~~~~l~---~qkee~~~~~~~~I~~~~~~~~~~~---------------------~~~ 733 (1072)
T KOG0979|consen 678 RERTKLNSELKSYQQRKERIENLVVDLD---RQEEEYAASEAKKILDTEDMRIQSI---------------------RWH 733 (1072)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHH---------------------HHH
Confidence 4788899988889999888888777764 3566666666666666554433222 222
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHH-----HHh-HHHHHHHHHHHHHHHHHH-HHHHhhhcc-cchhHHHH
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK-----DKN-VLQELDATKEQLENLSKR-YEELEAKSK-ADIKVLVK 544 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~-----e~~-~~qel~~~~~~~e~l~k~-~~elEaksk-ad~KvLvK 544 (724)
|+-. -|.-+.+.+.+++... ++...+..+.. ..+ ....+++..++++..-+. ..+++++-+ -..+-+..
T Consensus 734 ~~~~-~k~~e~~i~~~~~~~~--~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~ 810 (1072)
T KOG0979|consen 734 LELT-DKHKEIGIKEKNESSY--MARSNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKR 810 (1072)
T ss_pred HHHH-HHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhh
Confidence 2211 1222222222222111 11122222222 222 333344444444443322 233333333 56778888
Q ss_pred HHHHHhhhhHH----HHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 545 EVKFLRSSQIG----LKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 545 EVKsLR~s~~~----lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
|+.|++.+-.+ +.+|+.+.-..-.++...|+.|+.+.-...+...-.+.+.....+-|.+-+-.+.
T Consensus 811 ~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~ 880 (1072)
T KOG0979|consen 811 EIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLE 880 (1072)
T ss_pred ccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhh
Confidence 88888887766 8888888888889999999999976666666666677766666666666555543
No 239
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.75 E-value=6.7 Score=34.21 Aligned_cols=63 Identities=27% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHH
Q 004913 455 LQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENL 524 (724)
Q Consensus 455 lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l 524 (724)
|++.|..=|+++++ +.+|..-++..++....++.........+..++. |..|+++.+++++.+
T Consensus 3 Lea~~~~Lr~rLd~-------~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDS-------LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556555666666 8888888888888887777666666666666666 666666666555443
No 240
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.59 E-value=1.8e+02 Score=37.80 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=13.0
Q ss_pred cchhhHhHHHHHHHHHHhhhhcc
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTD 415 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktd 415 (724)
+++..+..=+..|.++....-.|
T Consensus 763 ~~l~~l~~r~~~L~~e~~~~Ps~ 785 (1353)
T TIGR02680 763 RELRALGARQRALADELAGAPSD 785 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 34445666666666666555443
No 241
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=75.57 E-value=1.4e+02 Score=35.04 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=25.2
Q ss_pred ccCCceEEeccc---ch--------hhH--hHHHHHHHHH----HhhhhcchHHHHHHhhh
Q 004913 382 FSGDAELVIPLD---QR--------HKL--SRVLLTMERR----LVTAKTDMEDLITRLNQ 425 (724)
Q Consensus 382 ~~~d~~~vlp~d---~r--------~kl--~rvl~t~~~r----l~~aktdmEDLiaRLnq 425 (724)
.+|..|||+|+- .+ ..| ++|+..|... +.. +.||.|+--|=.|
T Consensus 150 WpG~tqI~IPL~~~~~~~~~s~vdt~~i~~~~vv~~l~~~~dk~~~~-rk~m~D~KEreae 209 (489)
T PF05262_consen 150 WPGKTQIVIPLSDNILSGSLSDVDTDEISDEKVVQELREDKDKGIDK-RKDMVDIKEREAE 209 (489)
T ss_pred CCCCceEEEeccccccCCCccccchhhcccHHHHHHHhhccccChhh-hhhhHHHHHHHhH
Confidence 578889999987 33 223 2566655443 222 4689998443333
No 242
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.19 E-value=1.4e+02 Score=33.12 Aligned_cols=142 Identities=21% Similarity=0.214 Sum_probs=84.9
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQT 580 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~ 580 (724)
..+..... |.+|-...|.+...|..+-..+|-|...=+.--||+...-..+...|-.||.+-..+ ...|+|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee-----~~rQQEE-- 235 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEE-----NRRQQEE-- 235 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-----HHHHHHH--
Confidence 44444455 777888888888888888888888755555555666666666666666666543322 1222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhhhhhhhh
Q 004913 581 HNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADV 660 (724)
Q Consensus 581 ~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~~~~~~~ 660 (724)
+ ..|+.++--|+.|+|.+.+. ...+. ..|-++-|+|-. |-||.+-|-+-.
T Consensus 236 -----I--t~LlsqivdlQ~r~k~~~~E-----nEeL~---------q~L~~ske~Q~~-L~aEL~elqdkY-------- 285 (306)
T PF04849_consen 236 -----I--TSLLSQIVDLQQRCKQLAAE-----NEELQ---------QHLQASKESQRQ-LQAELQELQDKY-------- 285 (306)
T ss_pred -----H--HHHHHHHHHHHHHHHHHhhh-----HHHHH---------HHHHHHHHHHHH-HHHHHHHHHHHH--------
Confidence 2 35888999999999998864 22221 112223334433 566655552222
Q ss_pred hcccCCCCCccchHHHHHHHHHHHHhhHHHHHH
Q 004913 661 EKAHDNDVCTRTDNELREVIADILVDNAKLRKQ 693 (724)
Q Consensus 661 ~~~~~~~~~~~~d~elrk~lad~~idna~LRkq 693 (724)
.|+-.||.+.=-+-.+||++
T Consensus 286 -------------~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 286 -------------AECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred -------------HHHHHHHHHHHHHHHHhhCC
Confidence 26667777777766666654
No 243
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.52 E-value=52 Score=34.27 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred ccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 490 KQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 490 ~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
..|+.....-+...+...+. |..++..+++++.++++=.. .-|.|-.|+..||..-..|..+-.+++.+-.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~--------~aK~l~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ--------KAKALEEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455 55666666666666652211 2244556666666666666666655555555
Q ss_pred HHHH
Q 004913 569 KTEE 572 (724)
Q Consensus 569 e~E~ 572 (724)
.+|+
T Consensus 92 qlEk 95 (193)
T PF14662_consen 92 QLEK 95 (193)
T ss_pred HHHH
Confidence 5443
No 244
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.22 E-value=86 Score=30.18 Aligned_cols=147 Identities=23% Similarity=0.258 Sum_probs=78.5
Q ss_pred HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccc
Q 004913 420 ITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAES 499 (724)
Q Consensus 420 iaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~ 499 (724)
|.-||++...++|+.....-.-. .....++.+.|= .=|+|=-.|++-++.-..|...
T Consensus 4 ~~yiN~~L~s~G~~~~~~~~~~~------~~~~~~~~~vin--------~i~~Ll~~~~r~~~~~e~l~~~--------- 60 (151)
T PF11559_consen 4 IEYINQQLLSRGYPSDGLLFDSA------EESEDNDVRVIN--------CIYDLLQQRDRDMEQREDLSDK--------- 60 (151)
T ss_pred HHHHHHHHHHCCCCCCCccCccc------ccccccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH---------
Confidence 55678888888888775544333 222233333222 2344444455555544444332
Q ss_pred hhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 500 MEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 500 ~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
..++..+++ +...+...+++++.+.++...++++ ..-|-+++|++...+...|.|+.. +-..-.
T Consensus 61 -~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~----~~~l~~~~~~~~~~~k~~kee~~k----------lk~~~~ 125 (151)
T PF11559_consen 61 -LRRLRSDIERLQNDVERLKEQLEELERELASAEEK----ERQLQKQLKSLEAKLKQEKEELQK----------LKNQLQ 125 (151)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 244555555 5556666677777777666655544 344555666665555444444433 333333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 579 QTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 579 ~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
++...-..-.+|-=.|+.-|++||.+
T Consensus 126 ~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333334445556678888888764
No 245
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=74.00 E-value=7.7 Score=34.03 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=72.3
Q ss_pred eEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhh
Q 004913 387 ELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (724)
Q Consensus 387 ~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~ 466 (724)
.+=|+.+|+.++..++............++..+-..|+...+-..|=..||..+=.++..............++.-++.+
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 118 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVL 118 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35589999999999999999999999999999999999998888888889999988998888888888888888888887
Q ss_pred hhhhh
Q 004913 467 TQMQW 471 (724)
Q Consensus 467 t~mqw 471 (724)
|-=||
T Consensus 119 tpeQR 123 (125)
T PF13801_consen 119 TPEQR 123 (125)
T ss_dssp -GGGH
T ss_pred CHHHh
Confidence 76443
No 246
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=73.96 E-value=1.5e+02 Score=36.31 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred CCCCCCCCcccccccccccccCC-------CcccccCCceEEecccchhhHhHHHHHHHHHH---hhhhcchHHHHHHhh
Q 004913 355 SADGSPGLHRCAEVSSSREILGN-------SDLQFSGDAELVIPLDQRHKLSRVLLTMERRL---VTAKTDMEDLITRLN 424 (724)
Q Consensus 355 ~~d~~~dl~~~~~~~~~~~~~~~-------~~~~~~~d~~~vlp~d~r~kl~rvl~t~~~rl---~~aktdmEDLiaRLn 424 (724)
.++-++++.|+-..+.++++++. .+.++ ..+. ..-+.|+-+|-..-.-|++.- -+-+++.|.|-|.|.
T Consensus 48 ~r~Rs~~~~~s~~lsqqaelis~qlqE~rrle~e~-~~lr-e~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala 125 (739)
T PF07111_consen 48 RRGRSLELEGSQALSQQAELISRQLQELRRLEEEV-RALR-ETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALA 125 (739)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 34555666666666676766665 12221 1111 112346666666655666331 234577999999999
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913 425 QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST 504 (724)
Q Consensus 425 qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~ 504 (724)
.++.||.-|-.-. -.||+.+...-++.+...--.= |=.+..|+.|..+.|..|++.+..+.....+++.+
T Consensus 126 ~ae~~R~~lEE~~---q~ELee~q~~Hqeql~~Lt~aH-------q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~ 195 (739)
T PF07111_consen 126 GAEVVRKNLEEGS---QRELEEAQRLHQEQLSSLTQAH-------QEALASLTSKAEELEKSLESLETRRAGEAKELAEA 195 (739)
T ss_pred hHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997775444 3478888777777665433332 33445577777788877777755555555666777
Q ss_pred HHHHh-HHHHHHHHHHHHHH
Q 004913 505 VKDKN-VLQELDATKEQLEN 523 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~ 523 (724)
..|.+ |.++|-.+++.|+.
T Consensus 196 q~e~d~L~~qLsk~~~~le~ 215 (739)
T PF07111_consen 196 QREADLLREQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 77777 77777666665443
No 247
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=73.92 E-value=33 Score=39.45 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKT 586 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ 586 (724)
+.+|.+.-++.++.|.++..+. +.+-|++|-|.|-.....|-|+|....++-.++-..|.+.+++.+....
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDV------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444 7788888888888888888888888888888888888777766555443
No 248
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.55 E-value=2.7e+02 Score=35.64 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=90.6
Q ss_pred HHHHhhhcccchhHHHHHHHHHhhhhHHH---HHHHHHHHHhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHH
Q 004913 528 YEELEAKSKADIKVLVKEVKFLRSSQIGL---KQELSQMLNEKSKTEELLQQERQT-------HNHMKTVREKLLHECRI 597 (724)
Q Consensus 528 ~~elEakskad~KvLvKEVKsLR~s~~~l---k~el~~~~~eK~e~E~~l~~Er~~-------~e~~~~ar~kllhec~i 597 (724)
.+.++-+...+.+-|-+|++.++.+..+- ..++.|.+..-.+++....+++.+ -+++.---..+.....-
T Consensus 434 led~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~e 513 (1195)
T KOG4643|consen 434 LEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNE 513 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888888764432 333444444333444443333333 22222222334455666
Q ss_pred HHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhhhhhhhhhcccCCCCCccchHHHH
Q 004913 598 LLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELR 677 (724)
Q Consensus 598 L~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~~~~~~~~~~~~~~~~~~~d~elr 677 (724)
|.+++|.|..-+ +..++ -.-.--.+|.+-..+=+.||.++|.|-....+ ....+.+.+..+ .-+.|++
T Consensus 514 lkeQ~kt~~~qy--e~~~~------k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn--~~~LEq~~n~lE--~~~~elk 581 (1195)
T KOG4643|consen 514 LKEQYKTCDIQY--ELLSN------KLEELEELLGNLEEENAHLLKQIQSLKTTSQN--GALLEQNNNDLE--LIHNELK 581 (1195)
T ss_pred HHHHHHHHHHHH--HHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHH--HHHHHHhhhHHH--HHHHHHH
Confidence 777888886543 22222 13444566777777888999999999776433 244444443333 2233444
Q ss_pred HHH-------------------HHHHHhhHHHHHHHHHHHHH
Q 004913 678 EVI-------------------ADILVDNAKLRKQVNSVLRR 700 (724)
Q Consensus 678 k~l-------------------ad~~idna~LRkq~Nsv~r~ 700 (724)
||+ --+|.|+.-+|+-|+.+.|.
T Consensus 582 k~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~ 623 (1195)
T KOG4643|consen 582 KYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRK 623 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHH
Confidence 433 44677777788888776665
No 249
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.34 E-value=38 Score=37.15 Aligned_cols=93 Identities=18% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~ 551 (724)
..+|+-++.|+|.|++.- =.+.+.+.-|+. +..++|.+++.||.+++.+-++--+. +-..+|+.-++.
T Consensus 79 ~r~lk~~l~evEekyrkA-------Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~----~eK~~elEr~K~ 147 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKA-------MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY----REKIRELERQKR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 552 SQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 552 s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
.+..|+.|+..+-.+-.+...+|.+
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 250
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.28 E-value=2.4e+02 Score=34.84 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-------------cCCCCcccchhhhhHHHH---h
Q 004913 446 TTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-------------QDGNPHAESMEESTVKDK---N 509 (724)
Q Consensus 446 ~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-------------~~~~~~~e~~~~s~~~e~---~ 509 (724)
..|++-...=|||+--| -+|--+.++|-+.+++-|..-++. |=+....-+.++++.-|+ .
T Consensus 591 dLR~~L~~~Eq~aarrE----d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~ 666 (961)
T KOG4673|consen 591 DLRQTLSKKEQQAARRE----DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERS 666 (961)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34445555555665544 233444444555555554433322 112222223333333333 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLS 525 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~ 525 (724)
|.+.|..-+-++-.+.
T Consensus 667 l~~rL~dSQtllr~~v 682 (961)
T KOG4673|consen 667 LNERLSDSQTLLRINV 682 (961)
T ss_pred HHHhhhhHHHHHHHHH
Confidence 7777776665555544
No 251
>PLN02866 phospholipase D
Probab=72.63 E-value=9 Score=47.92 Aligned_cols=91 Identities=21% Similarity=0.429 Sum_probs=64.1
Q ss_pred eEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC---------------------------------C-C----
Q 004913 67 VVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF---------------------------------P-K---- 108 (724)
Q Consensus 67 yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~f---------------------------------P-~---- 108 (724)
-..|+|.+ +.. .=.|.+++.-|+-.-||-.|++.- | .
T Consensus 32 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (1068)
T PLN02866 32 LLSYTIEL--QYK---QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVP 106 (1068)
T ss_pred EEEEEEEE--EEe---eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccccccccccccc
Confidence 34799988 332 348999999999999998887541 0 0
Q ss_pred ---------CCCC---CCCCCc-ccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 109 ---------KNIP---PAPPKG-LLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 109 ---------~~LP---pLPPKk-~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
..+| .||--+ .+|+ .+.+-..++.+||.||+.++.++.+.++..+..||+....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~l 173 (1068)
T PLN02866 107 LHHDESAKNRDVPSSAALPVIRPALGR-QQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSKL 173 (1068)
T ss_pred ccchhhcccCCCcchhhcceeccccCC-CccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeecee
Confidence 1122 122111 1222 3467777888899999999999999999999999998754
No 252
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.46 E-value=1.6e+02 Score=32.64 Aligned_cols=181 Identities=20% Similarity=0.319 Sum_probs=91.7
Q ss_pred hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh---hHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~---~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
..|++|-.-+||+.++-=-+==.|-=+|||-.+..++.. -++.|-=-|..-|+.- +-|-+++...|.+.+
T Consensus 89 LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~n-------e~LsQqLskaesK~n 161 (305)
T PF14915_consen 89 LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNN-------EILSQQLSKAESKFN 161 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHh-------HHHHHHHHHHHHHHH
Confidence 345666666666654433333233335555555544442 1222222222222222 558889999999998
Q ss_pred cccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH----HHH------HHHHHhhhhHHHHH
Q 004913 489 SKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKV----LVK------EVKFLRSSQIGLKQ 558 (724)
Q Consensus 489 s~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~Kv----LvK------EVKsLR~s~~~lk~ 558 (724)
+.+++=-+.-- +..|+-| =|..++-.+.-.+-+..|+|..-..+.-- .+| -+=-|-+.++=|.|
T Consensus 162 sLe~elh~trd----aLrEKtL--~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQ 235 (305)
T PF14915_consen 162 SLEIELHHTRD----ALREKTL--ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQ 235 (305)
T ss_pred HHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88554222211 2223331 12233333333344444444433332211 111 13356677777888
Q ss_pred HHHHHHHhHHHHHH--------------HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhhh
Q 004913 559 ELSQMLNEKSKTEE--------------LLQQERQTHNH-MKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 559 el~~~~~eK~e~E~--------------~l~~Er~~~e~-~~~ar~kllhec~iL~~rLqEC 605 (724)
.|+.+.+.=..-|+ -|+.|.+++-. ...-+++|+.||.-|+.|+--|
T Consensus 236 QLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 236 QLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88887654433443 23455555433 3344677999999999998554
No 253
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.36 E-value=50 Score=39.58 Aligned_cols=101 Identities=21% Similarity=0.341 Sum_probs=20.1
Q ss_pred ceEEecccchhhHhHHHHHHHHHHhhhhcc---------hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHH---
Q 004913 386 AELVIPLDQRHKLSRVLLTMERRLVTAKTD---------MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKE--- 453 (724)
Q Consensus 386 ~~~vlp~d~r~kl~rvl~t~~~rl~~aktd---------mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke--- 453 (724)
-+.+|=..+|.-|+.+|.+...=......+ .+||+..+.+..+-.+ ..|++|+.+|...++.+..
T Consensus 406 rq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele---~~l~~l~~~l~~~k~~~~~~~~ 482 (722)
T PF05557_consen 406 RQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELE---AQLEELEEELSEQKQRNETLEA 482 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccccchhh
Confidence 456777788888888998877666555444 5555554444222111 1456666666555443221
Q ss_pred ---HHHHHH-HH-------------hhHhhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913 454 ---TLQQAI-LS-------------ERERLTQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 454 ---~lqQa~-l~-------------ErEr~t~mqwdmeelr~k~~e~E~~lks 489 (724)
.+.+.. .. =|..+..++=+.+.|+++...+|++|..
T Consensus 483 e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 483 ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp -----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 11 1346667777777788888888888765
No 254
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.81 E-value=27 Score=42.26 Aligned_cols=96 Identities=14% Similarity=0.235 Sum_probs=52.3
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH--H
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER--Q 579 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er--~ 579 (724)
.+....+ +.+.++...+.+...+....+-|-+-+.+.+-+..+++.|+++..++|..++. ++.-+...+ +
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~-------Q~~~i~~~~~~~ 676 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY-------QQRQIESQKSPK 676 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccc
Confidence 3333333 66666666666655444555666666666666666666666666665555543 222111111 1
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 580 ---------THNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 580 ---------~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
..+..+.+.++.-++++-|-++++.-
T Consensus 677 ~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 677 KKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344566677777777777776643
No 255
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.78 E-value=55 Score=37.71 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=68.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHh-hc--ccchhHHHHHHHHhhhhhhh
Q 004913 576 QERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALAL-LT--SSDDQISLLITEAQLLAEDS 652 (724)
Q Consensus 576 ~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dl-L~--tsDnrI~lLlaEaqll~~d~ 652 (724)
++|++.|+-...+.++++-+.-+..++-.---|.. +..--++.+.|+.. |+ .+++.+.-+|+|++-.....
T Consensus 280 r~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkv------vl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~ 353 (439)
T KOG2911|consen 280 RARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKV------VLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQ 353 (439)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHH------HHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhH
Confidence 34455555556666777777777776654333222 22233456788865 44 68899999999999887777
Q ss_pred hhhhhhhhhcccCCCCCccchHHHHHHHHHHHHhhHH
Q 004913 653 KAAASADVEKAHDNDVCTRTDNELREVIADILVDNAK 689 (724)
Q Consensus 653 e~~~~~~~~~~~~~~~~~~~d~elrk~lad~~idna~ 689 (724)
++ +..+=++.+......-|+++-|=|=|+.-|+.+
T Consensus 354 ~E--V~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k 388 (439)
T KOG2911|consen 354 EE--VEDALASYNVNNIDFEDEDLEKELEDLEADEKK 388 (439)
T ss_pred HH--HHHHHhcCCCCCCccchHHHHHHHHHHHhcccc
Confidence 66 233334444444455788888888888888776
No 256
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.72 E-value=1.7e+02 Score=34.46 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=61.1
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH-HHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ-QERQ 579 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~-~Er~ 579 (724)
++--+... |..++.-..++++.|+.+.++|-+|.+.+. +=.-+|+-.-+.-.+|-.||+..--++.++-+.+- ++++
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~-Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG-ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 44444455 667788888889999999999888876542 33445665555566677777776666666665543 3333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 004913 580 THNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 580 ~~e~~~~ar~kllhec~iL~~rL 602 (724)
.++.+ .+..|.+....-|+.++
T Consensus 405 aq~~~-~slek~~~~~~sl~~~i 426 (622)
T COG5185 405 AQGIF-KSLEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHh
Confidence 33333 34555555555555443
No 257
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.55 E-value=48 Score=34.42 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
+...+...+++++.|+.++.++..+.......|..++..+.....+|++|.+++-++-.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888887777777777777766666667777766644433
No 258
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.37 E-value=11 Score=36.82 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhhhh--HHHHHHHHHHHHhHHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQ--IGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~--~~lk~el~~~~~eK~e~E~~l~ 575 (724)
.|-|-.|.++|+++. .+|..++.+.-++..+++.-|.
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555443 3444444444444444444443
No 259
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.14 E-value=27 Score=38.15 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~ 563 (724)
|.+|++.|.....++.+|+...
T Consensus 62 l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 260
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.98 E-value=2.2e+02 Score=35.65 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=64.9
Q ss_pred cchhhHhHHHHHHHHHHhhhhcch---HHHHHHhhhhhhHHHH------HHhhhhhhHHHHHHHHHhhHHHHH-------
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTDM---EDLITRLNQEMTVKDY------LMTKVKDLEVELETTKQKSKETLQ------- 456 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktdm---EDLiaRLnqe~avk~f------L~tKvkDlE~eLe~t~~~~ke~lq------- 456 (724)
++-.|++-++..|+--+...|.+- .-..+-|+ +.|++| |..-+.+|+.+|..-.++.++-+|
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~--~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t 734 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELE--EEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKT 734 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccC
Confidence 344678888877777666666532 22233333 344555 777788899999865555555554
Q ss_pred -----HHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 457 -----QAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 457 -----Qa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
+|.+.|=++.+-=||+...=+.|..++-...|.+
T Consensus 735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7888888888888999888777777777766666
No 261
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.89 E-value=31 Score=35.11 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 537 ADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 537 ad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
.++..+..+.+.|+....+|++||.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777666
No 262
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.71 E-value=95 Score=29.21 Aligned_cols=91 Identities=25% Similarity=0.247 Sum_probs=61.8
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
..+++++++..=+.++|..|++..... ..+ ..+....+.+ +..++...+..++.+......|-.....+...+...|
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~-~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGD-DLE-SVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCcccCC-CHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 457888899999999999999886554 222 2344444555 7778887888888888877777776666666666666
Q ss_pred HHHhhhhHHHHHHH
Q 004913 547 KFLRSSQIGLKQEL 560 (724)
Q Consensus 547 KsLR~s~~~lk~el 560 (724)
..|...-..|.+.+
T Consensus 82 ~~l~~~w~~l~~~~ 95 (213)
T cd00176 82 EELNQRWEELRELA 95 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655544444433
No 263
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.71 E-value=2.2e+02 Score=34.41 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=36.0
Q ss_pred ceEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Q 004913 386 AELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (724)
Q Consensus 386 ~~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~ 448 (724)
+.|-+=.....+-.+|++++=.....- .+-.|..+.....+||...+..++.+|++..
T Consensus 230 i~Is~~~~dP~~Aa~ilN~la~~Yi~~-----~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE 287 (726)
T PRK09841 230 LELTMTGDDPQLITRILNSIANNYLQQ-----NIARQAAQDSQSLEFLQRQLPEVRSELDQAE 287 (726)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778888888865555433 2333444455567777777666666665543
No 264
>PRK12704 phosphodiesterase; Provisional
Probab=70.09 E-value=2.3e+02 Score=33.33 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 004913 554 IGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 554 ~~lk~el~~~~~eK~e~E 571 (724)
.+-|++|=..+++....|
T Consensus 153 ~ea~~~l~~~~~~~~~~~ 170 (520)
T PRK12704 153 EEAKEILLEKVEEEARHE 170 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 265
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=69.93 E-value=1.5 Score=53.46 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcH
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDM 473 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdm 473 (724)
++.++.+=...++..+...+...|++...+-.-.-.+..|..-+.||-..+...... --.|+.+.-. +.=..
T Consensus 399 e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~-v~eLek~kr~-------LE~e~ 470 (859)
T PF01576_consen 399 ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKS-VHELEKAKRR-------LEQEK 470 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccc-hHHHHHHHHH-------HHHHH
Confidence 344555556667777777788888888877766666666666666665555433221 1233333322 33356
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh--HHH---HHHHHHHHHHHHHHHHHHHhhhcccchh---HHHHH
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN--VLQ---ELDATKEQLENLSKRYEELEAKSKADIK---VLVKE 545 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~--~~q---el~~~~~~~e~l~k~~~elEakskad~K---vLvKE 545 (724)
+|++..+.|.|..|+..++-+.+.+..++.+..+.+ +.+ +++.+| .++++++.++++.--.+.| -++++
T Consensus 471 ~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~R---r~~qr~l~~le~~LE~E~k~r~~~~r~ 547 (859)
T PF01576_consen 471 EELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETR---RNHQRQLESLEAELEEERKERAEALRE 547 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988877 333 344442 2334455555444333333 36677
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-Hh------hhhHHHHHH-------HHHHHHHHHHHHHhhhccccc
Q 004913 546 VKFLRSSQIGLKQELSQMLNEKSKTEELLQQER-QT------HNHMKTVRE-------KLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er-~~------~e~~~~ar~-------kllhec~iL~~rLqEC~~~~~ 610 (724)
-|.|.....+|..-|..+-+.+.++.+.|.+=. +. .+-+..++. .+-..|+.|++-|.+|...+-
T Consensus 548 kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~ 626 (859)
T PF01576_consen 548 KKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALE 626 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877777777666666666655555443211 00 011112222 233456677777777776654
No 266
>PLN02320 seryl-tRNA synthetase
Probab=69.90 E-value=31 Score=40.24 Aligned_cols=85 Identities=14% Similarity=0.279 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR 550 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR 550 (724)
|+.-+|..-..+..+++... -....+ ....+.++.. +.++++.+|.+...++++... .+.+.+..-|..|+|.|+
T Consensus 68 D~k~ir~n~~~v~~~l~~R~-~~~~vd-~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk 143 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRN-SNANLE-LVLELYENMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLK 143 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcC-CCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHH
Confidence 57778877777777777652 111111 1122222322 445555555555555555443 233344445555555555
Q ss_pred hhhHHHHHHH
Q 004913 551 SSQIGLKQEL 560 (724)
Q Consensus 551 ~s~~~lk~el 560 (724)
....+|++++
T Consensus 144 ~~i~~le~~~ 153 (502)
T PLN02320 144 EGLVTLEEDL 153 (502)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 267
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=69.68 E-value=63 Score=37.17 Aligned_cols=105 Identities=21% Similarity=0.307 Sum_probs=74.9
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh
Q 004913 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~ 509 (724)
+=|.|||.||..-.|..| |.+.+.-|---.--+-.++=||+.+...+..|+..++.+ --=+---|..++.+-+|-+
T Consensus 220 d~lltkVDDLQD~vE~LR---kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqq 296 (426)
T smart00806 220 DSLLTKVDDLQDIIEALR---KDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQ 296 (426)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 558899999999998887 566676666655666677889999999999999999987 2223334566688888877
Q ss_pred ---HHHH-HHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 510 ---VLQE-LDATKEQLENLSKRYEELEAKSKAD 538 (724)
Q Consensus 510 ---~~qe-l~~~~~~~e~l~k~~~elEakskad 538 (724)
+.++ +.+.++.|+.+.+=+.=+|.-++-+
T Consensus 297 fL~lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ 329 (426)
T smart00806 297 FLTLQEDLIADLKEDLEKAEETFDLVEQCCEEQ 329 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3456777777776666666544444
No 268
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.62 E-value=1.5e+02 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 494 NPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 494 ~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
+...+...+++..|++ +..+|.-+..-|-+|.++|+-+
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444455678888999 9999999999999999998854
No 269
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.19 E-value=53 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=16.5
Q ss_pred hhhhHHHHHH----HHHhhHHHHHHHHH---HhhHhhhhh
Q 004913 437 VKDLEVELET----TKQKSKETLQQAIL---SERERLTQM 469 (724)
Q Consensus 437 vkDlE~eLe~----t~~~~ke~lqQa~l---~ErEr~t~m 469 (724)
+||||-.+-- +-+.-|+.+|+.|= +.=|.|+..
T Consensus 14 lKELEK~~pK~~gI~~~~VKdvlq~LvDDglV~~EKiGss 53 (188)
T PF03962_consen 14 LKELEKLAPKEKGIVSMSVKDVLQSLVDDGLVHVEKIGSS 53 (188)
T ss_pred HHHHHHHcccccCCchhhHHHHHHHHhccccchhhhccCe
Confidence 4566555443 23455666666653 333445443
No 270
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.08 E-value=2.1e+02 Score=35.13 Aligned_cols=96 Identities=25% Similarity=0.259 Sum_probs=45.6
Q ss_pred hhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 004913 469 MQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKF 548 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKs 548 (724)
++=+.|+||..+.--|+--|..++++ ..|+ +.+... -++|+.+|.+.|.+-=+......-.|.|.+++
T Consensus 113 graEae~Lraala~ae~~R~~lEE~~-q~EL--ee~q~~---------Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~ 180 (739)
T PF07111_consen 113 GRAEAEELRAALAGAEVVRKNLEEGS-QREL--EEAQRL---------HQEQLSSLTQAHQEALASLTSKAEELEKSLES 180 (739)
T ss_pred hhhhHHHHHHHHhhHHHHHHhhHHHH-HHHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558888887777666666554332 2222 222211 23344444444444444444444444444444
Q ss_pred HhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 549 LRSSQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 549 LR~s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
|=.......++|..+.++...+.+=|++
T Consensus 181 le~~r~~e~~~La~~q~e~d~L~~qLsk 208 (739)
T PF07111_consen 181 LETRRAGEAKELAEAQREADLLREQLSK 208 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 271
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=69.04 E-value=35 Score=38.58 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHhccc
Q 004913 472 DMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~ 490 (724)
|+.-+|..-..+..+++..
T Consensus 3 D~k~ir~n~~~v~~~l~~R 21 (425)
T PRK05431 3 DIKLIRENPEAVKEALAKR 21 (425)
T ss_pred CHHHHHhCHHHHHHHHHhc
Confidence 4445666555566666655
No 272
>PLN03188 kinesin-12 family protein; Provisional
Probab=68.74 E-value=3.7e+02 Score=35.23 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=9.6
Q ss_pred chHHHHHHhhhhh
Q 004913 415 DMEDLITRLNQEM 427 (724)
Q Consensus 415 dmEDLiaRLnqe~ 427 (724)
-.||=|+||-.-+
T Consensus 916 ~~~~ki~~l~~~~ 928 (1320)
T PLN03188 916 TREDKIIRLESLM 928 (1320)
T ss_pred hhhhhHHHHhhhc
Confidence 4688899986655
No 273
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.59 E-value=1.1e+02 Score=37.22 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhhhhhh
Q 004913 640 LLITEAQLLAEDSKAA 655 (724)
Q Consensus 640 lLlaEaqll~~d~e~~ 655 (724)
-++.|++.|++-.-++
T Consensus 376 ~VF~e~~~lv~S~lDG 391 (670)
T KOG0239|consen 376 DVFEEVSPLVQSALDG 391 (670)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3456888886654443
No 274
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.37 E-value=2.1e+02 Score=32.34 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=11.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHH
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSK 569 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e 569 (724)
++..|+.+...++.++.++-.+..+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455544444444443
No 275
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.07 E-value=1.3e+02 Score=29.93 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=12.6
Q ss_pred hhHhhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913 462 ERERLTQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 462 ErEr~t~mqwdmeelr~k~~e~E~~lks 489 (724)
+|.-|..|+=+.+.|++.+-.++..|+.
T Consensus 71 ~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 71 RKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 276
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.98 E-value=32 Score=40.51 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 004913 518 KEQLENLSKRYEELEA 533 (724)
Q Consensus 518 ~~~~e~l~k~~~elEa 533 (724)
++.++.+++++++++.
T Consensus 190 ~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKK 205 (555)
T ss_pred chhHHHHHHHHHHHHh
Confidence 3344444444444443
No 277
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=67.55 E-value=81 Score=33.50 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=86.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH--hHHHHHHHHHHHHHhhhhHH
Q 004913 508 KNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN--EKSKTEELLQQERQTHNHMK 585 (724)
Q Consensus 508 ~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~--eK~e~E~~l~~Er~~~e~~~ 585 (724)
++++.+++.+=.+.+.+.+. +..+.-...+.|.++.+.+|.++.++-++|..-+. ...+++++=..=.+-..-+.
T Consensus 68 ~~vl~qte~iA~~~~~~aE~---l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e 144 (234)
T cd07686 68 LHMVQQTEQLSKIMKTHAEE---LNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVN 144 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34888888888777777665 56777778889999999999999988888776663 45667777666666666777
Q ss_pred HHHHHHHH------HHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhh
Q 004913 586 TVREKLLH------ECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSK 653 (724)
Q Consensus 586 ~ar~kllh------ec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e 653 (724)
.||+|.-. +-.-.++|+++|+..+-. ..|.--|-|+.|+..-+...
T Consensus 145 ~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~----------------------~kN~Yll~i~~aN~~k~~Yy 196 (234)
T cd07686 145 SAKEKYKDAVAKGKETEKARERYDKATMKLHM----------------------LHNQYVLAVKGAQLHQHQYY 196 (234)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHh----------------------hhhHHHHHHHHHHHHHHHHH
Confidence 77777742 235688888888877652 23566666777776644443
No 278
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=67.12 E-value=1.8 Score=52.69 Aligned_cols=125 Identities=24% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHhhh--hHHHHHHHHHHHHhHH---------------HHHHHHHHHHHhhhhH
Q 004913 522 ENLSKRYEELEAKSKADIKVLVKEVKFLRSS--QIGLKQELSQMLNEKS---------------KTEELLQQERQTHNHM 584 (724)
Q Consensus 522 e~l~k~~~elEakskad~KvLvKEVKsLR~s--~~~lk~el~~~~~eK~---------------e~E~~l~~Er~~~e~~ 584 (724)
+.|+.+++|+|+.-.+ -|-+.||-+ ...+|+++.+-+.+|- +++.-|-.|+.-...+
T Consensus 471 ~El~~~leE~E~~l~~------~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~ 544 (859)
T PF01576_consen 471 EELQEQLEEAEDALEA------EEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEA 544 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444554443322 344444443 3455555555555543 3444454455444455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc--cc----ccC-------ceecccCChhhHHHhhcccchhHHHHHHHHhhhhhh
Q 004913 585 KTVREKLLHECRILLNRFQACNANLY--AE----EED-------NVILESSSAADALALLTSSDDQISLLITEAQLLAED 651 (724)
Q Consensus 585 ~~ar~kllhec~iL~~rLqEC~~~~~--~e----e~~-------~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d 651 (724)
...++||=.++.-|.-+|..-|-.-- .. -.. .+--......++..-+..+.-|+..|-+|..-+...
T Consensus 545 ~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~ 624 (859)
T PF01576_consen 545 LREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREA 624 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666776666666655543332110 00 000 000011123455556666677777776666555443
Q ss_pred h
Q 004913 652 S 652 (724)
Q Consensus 652 ~ 652 (724)
.
T Consensus 625 ~ 625 (859)
T PF01576_consen 625 L 625 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 279
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.04 E-value=88 Score=37.88 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.7
Q ss_pred EEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhh
Q 004913 388 LVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQ 425 (724)
Q Consensus 388 ~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnq 425 (724)
+.+..++-.++..-+.++...|..++.+.+.++..|-.
T Consensus 170 ~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 170 LDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566777777777777777887777777777777665
No 280
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=66.98 E-value=2.6e+02 Score=32.86 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=61.9
Q ss_pred hHHHHHHhhhhhhHHH--HHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCC----CCcccchh
Q 004913 428 TVKDYLMTKVKDLEVE--LETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDG----NPHAESME 501 (724)
Q Consensus 428 avk~fL~tKvkDlE~e--Le~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~----~~~~e~~~ 501 (724)
+||+.|.++|--||+= |-+..++-+ -.+||+-.+.|..-+||- +.-+++...|+..+.+-.- .-+.-..|
T Consensus 190 e~~~ll~~Rve~le~~Sal~~lq~~L~-la~~~~~~~~e~~i~~~~---~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~k 265 (554)
T KOG4677|consen 190 EVRRLLKGRVESLERFSALRSLQDKLQ-LAEEAVSMHDENVITAVL---IFLKRTLSKEIEFRNELEVRQLALRHLIHFK 265 (554)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999986 344444443 356778888888888763 3445555555555433000 00001112
Q ss_pred hhhHHHHhHHH---HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh
Q 004913 502 ESTVKDKNVLQ---ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552 (724)
Q Consensus 502 ~s~~~e~~~~q---el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s 552 (724)
..+.+.+.+++ =++++++.++++++++.-+..+-| .-.+-+||--+|--
T Consensus 266 Ke~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k--stas~~E~ee~rve 317 (554)
T KOG4677|consen 266 KEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK--STASRKEFEETRVE 317 (554)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc--chhHHHHHHHHHhc
Confidence 23333333222 244455555555555544433222 33455666555544
No 281
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.68 E-value=3.2e+02 Score=33.71 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh-------hh
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQT-------HN 582 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~-------~e 582 (724)
...|+...+..|..|..+|.+++.+.+-++..+--|+..|...+..+.+...+--....++|+=|+.-... -.
T Consensus 364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~Ln 443 (717)
T PF09730_consen 364 AVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLN 443 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555666666666666666666666666767777777776666664444433333444333332222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 583 HMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 583 ~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
.|+....-|-.|.+-|-..+=-||
T Consensus 444 sAQDELvtfSEeLAqLYHHVC~cN 467 (717)
T PF09730_consen 444 SAQDELVTFSEELAQLYHHVCMCN 467 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555666778888887776666
No 282
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.35 E-value=2e+02 Score=31.32 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=20.8
Q ss_pred HHHHHHhhhhh--hHHHHHHhhhhhhHHHHHHHHHhh
Q 004913 417 EDLITRLNQEM--TVKDYLMTKVKDLEVELETTKQKS 451 (724)
Q Consensus 417 EDLiaRLnqe~--avk~fL~tKvkDlE~eLe~t~~~~ 451 (724)
|..+.+++... ...+||...|..++.+|+...++-
T Consensus 157 ~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 157 ERLINRLNERARKDTIAFAENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 355688777777777776665443
No 283
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.20 E-value=3.8e+02 Score=34.41 Aligned_cols=172 Identities=21% Similarity=0.263 Sum_probs=108.9
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHHH--HHHhhHhhhhhh
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQA--ILSERERLTQMQ 470 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQa--~l~ErEr~t~mq 470 (724)
..+.-.|..|+..+....-...+|-..++-+.-++.+|..++.-|+..|..+-+.+ ++.++|+ .|.|.|.+++-|
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~ 523 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQ 523 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788899999999999999999999999999999999999998887765443 4555554 455677776643
Q ss_pred hcH--------HHHHHHHHHHHHHhccc---cCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHH---------
Q 004913 471 WDM--------EELRQKSLEMEWKLKSK---QDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRY--------- 528 (724)
Q Consensus 471 wdm--------eelr~k~~e~E~~lks~---~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~--------- 528 (724)
=-- .+||+.+.++-.-+.+. .|.+-..+...+..+.... +.+.+..+-..+-+...+.
T Consensus 524 ~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~ 603 (1041)
T KOG0243|consen 524 EKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLA 603 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 332 24555555555555433 4555555555555554444 4444444433333222221
Q ss_pred -------------HHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhH
Q 004913 529 -------------EELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEK 567 (724)
Q Consensus 529 -------------~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK 567 (724)
+.+.-+..+++.++..=+.+++..+..||+.+.--+...
T Consensus 604 ~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i 655 (1041)
T KOG0243|consen 604 QMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVI 655 (1041)
T ss_pred hhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333455666777777777777777777665554443
No 284
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.96 E-value=1e+02 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHHHHhhH
Q 004913 434 MTKVKDLEVELETTKQKSKETLQQAILSERE 464 (724)
Q Consensus 434 ~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErE 464 (724)
--.++|.+.+|...++..-..+-.....||+
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~ 60 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERK 60 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888877777777666666554
No 285
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.93 E-value=1.7e+02 Score=30.37 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
++.|+.-.+++.+.+..|.++|.+.+++=..++..-
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~ 186 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARK 186 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999877776543
No 286
>PRK11519 tyrosine kinase; Provisional
Probab=65.73 E-value=2.4e+02 Score=34.01 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=38.6
Q ss_pred ceEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHH-hhhhhhHHHHHHhhhhhhHHHHHHHHHh
Q 004913 386 AELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITR-LNQEMTVKDYLMTKVKDLEVELETTKQK 450 (724)
Q Consensus 386 ~~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaR-Lnqe~avk~fL~tKvkDlE~eLe~t~~~ 450 (724)
+.|.+=.....+-.+|++++-+.... +.+.+ .-+.....+||...+..++.+|+...++
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~~Yi~------~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~ 289 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITRNYLE------QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENK 289 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888555543 33333 3334457788888888877777765444
No 287
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.15 E-value=1e+02 Score=31.27 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE 462 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E 462 (724)
|+..|--|+.-+..+++.....+|.-.+-..=.+=+..++.+++.....-.++..+.|=..++.+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~ 92 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQR 92 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444444333333322233333444444444444455555554444443
No 288
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.64 E-value=2.9e+02 Score=32.51 Aligned_cols=147 Identities=24% Similarity=0.342 Sum_probs=81.4
Q ss_pred chHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCC
Q 004913 415 DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGN 494 (724)
Q Consensus 415 dmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~ 494 (724)
--+..+++|-+.--.|+=|..-++|=|+-|+...++-++.-+| + +-.|| ||+ +.|+-+.+.=+.|....+-.
T Consensus 266 q~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~-~----~~ltq-qwe--d~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 266 QFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQ-M----EELTQ-QWE--DTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHH-H----HHHHH-HHH--HHhhhHHHHHHHHHHHHhcc
Confidence 3456777777777777888888888888777776665544333 2 23566 774 56666666555555553222
Q ss_pred CcccchhhhhHHHHh-HHHHHHHHHHHHH----HHHHHHHHHhhhcc-cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 495 PHAESMEESTVKDKN-VLQELDATKEQLE----NLSKRYEELEAKSK-ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 495 ~~~e~~~~s~~~e~~-~~qel~~~~~~~e----~l~k~~~elEaksk-ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
.-... . ..+.+ +.|+|.++-++.+ ...+=+.|+|-..+ +.+|++..=+|-+=...+..+++.-..+.|-.
T Consensus 338 e~e~~---e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etr 413 (521)
T KOG1937|consen 338 ETEDE---E-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETR 413 (521)
T ss_pred cchHH---H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11111 1 22222 4445544444443 22344556666555 45888877666655555555555555555544
Q ss_pred HHHHH
Q 004913 569 KTEEL 573 (724)
Q Consensus 569 e~E~~ 573 (724)
++-+=
T Consensus 414 eLqkq 418 (521)
T KOG1937|consen 414 ELQKQ 418 (521)
T ss_pred HHHHH
Confidence 44333
No 289
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.60 E-value=95 Score=38.43 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=27.9
Q ss_pred chHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhH
Q 004913 415 DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSK 452 (724)
Q Consensus 415 dmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~k 452 (724)
.|+++++|||- -|+=.+.-+++++.+|++...+-|
T Consensus 851 k~~ei~s~lke---~r~e~~~~~~~~~~~id~lv~~IK 885 (1259)
T KOG0163|consen 851 KTIEILSRLKE---GREEIISGANSTYRQIDDLVKKIK 885 (1259)
T ss_pred HHHHHHHHHhc---chHHHHhhhhhHHHHHHHHHHHhc
Confidence 68899999986 566677788889888888777665
No 290
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=64.27 E-value=89 Score=36.31 Aligned_cols=125 Identities=22% Similarity=0.328 Sum_probs=64.3
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH--HHHhhHHHHHHHHHHhhHhhhhhhhc
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELET--TKQKSKETLQQAILSERERLTQMQWD 472 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~--t~~~~ke~lqQa~l~ErEr~t~mqwd 472 (724)
..+||+++.-|+. |-.|.+..+||-.||+.+-.=..-..+---|||.-|.. +... +.--+-.|++| + +
T Consensus 241 kehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~e----lreg~e~e~~r--k---e 310 (575)
T KOG4403|consen 241 KEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSE----LREGVENETSR--K---E 310 (575)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhh----hhcchhHHHHH--H---H
Confidence 3457777777764 77889999999999987644322222222244444431 1111 11112223333 1 5
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHH------------HHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVK------------DKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~------------e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
+|-||.++.+-|-.|..-. ...+-.++|+..+ +.+ ..++|..++++.|.|+|+...+
T Consensus 311 lE~lR~~L~kAEkele~nS--~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 311 LEQLRVALEKAEKELEANS--SWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
Confidence 6667766665554443221 2333333333222 222 4456666777777777665544
No 291
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=64.22 E-value=4.5e+02 Score=34.56 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=85.2
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCc-------ccchhhhhHHH
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPH-------AESMEESTVKD 507 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~-------~e~~~~s~~~e 507 (724)
+|++.++++|.++... -+++-+..-++=..+--.-=...+++.+..+...-+.-....... +...+.++...
T Consensus 705 ~~~~~~~~~l~k~~k~-~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l 783 (1294)
T KOG0962|consen 705 DKLEEAEVELSKEEKI-FEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETL 783 (1294)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHH
Confidence 4667777777776655 666666554422111111113344444444444433322111111 11111222222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhccc--c----hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913 508 KNVLQELDATKEQLENLSKRYEELEAKSKA--D----IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581 (724)
Q Consensus 508 ~~~~qel~~~~~~~e~l~k~~~elEakska--d----~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~ 581 (724)
....-.++.+-++.+...++++++..++.+ | +--|-+|+..+=.++.++.+|+..+-+++.+.++.+++.....
T Consensus 784 ~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~ 863 (1294)
T KOG0962|consen 784 QTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLR 863 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345677778888888999998888877 3 2334556666666788899999999999999999998887444
Q ss_pred hh
Q 004913 582 NH 583 (724)
Q Consensus 582 e~ 583 (724)
..
T Consensus 864 ~e 865 (1294)
T KOG0962|consen 864 NE 865 (1294)
T ss_pred HH
Confidence 33
No 292
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.83 E-value=2.3e+02 Score=31.05 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=74.1
Q ss_pred hhHHHHHHhhhhhhHHHHHH--HHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913 427 MTVKDYLMTKVKDLEVELET--TKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST 504 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~--t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~ 504 (724)
...|.|++.=+=++=.+|.. +++=++..+.-++-+ =--++.++-+++-||.++-|.=.+.+.. ...+..
T Consensus 121 ~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~-l~DLesa~vkV~WLR~~L~Ei~Ea~e~~--------~~~~~~ 191 (269)
T PF05278_consen 121 QQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIAT-LKDLESAKVKVDWLRSKLEEILEAKEIY--------DQHETR 191 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHH-HHHHHHcCcchHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 34455555555555555532 233344444222211 1125556667777888877754443333 111233
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
..|++ ....|...++.++.+..+ .|-.-||||-+|...++++..|.++-.+-+.+.+.+--=+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~Ee-----------L~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEE-----------LKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 444455555555544433 3444578899999999999999998888887777654433
No 293
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=63.54 E-value=2e+02 Score=33.31 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=60.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccccccCceeccc
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN---LYAEEEDNVILES 621 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~---~~~ee~~~~~~~~ 621 (724)
||-++.+...-|-...+|--.|-.-+-..|-.|++.-.+-+.-...|..--.-|+|||-+--.- |+.-.+|- .+
T Consensus 422 elqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgG---tG 498 (593)
T KOG4807|consen 422 ELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGG---TG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCC---CC
Confidence 4444444444444445555555556666666676655555555555665566677777664433 23333332 34
Q ss_pred CCh---hhHHH---hhcccchhHHHHHHHHhhhhhhh
Q 004913 622 SSA---ADALA---LLTSSDDQISLLITEAQLLAEDS 652 (724)
Q Consensus 622 ss~---~da~d---lL~tsDnrI~lLlaEaqll~~d~ 652 (724)
|.+ -||.+ ||-+-.+-|.-|--|++-|-++-
T Consensus 499 splaqgkdayELEVLLRVKEsEiQYLKqEissLkDEL 535 (593)
T KOG4807|consen 499 SPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDEL 535 (593)
T ss_pred CccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 433 46655 57788888888888887775443
No 294
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.55 E-value=40 Score=33.53 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADI---KVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~---KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
.+...+|+++-.-+.++..+-+..+.|- +-|+|||-.||.+..++.-++.-.+
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888888874 5799999999998776655444433
No 295
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.43 E-value=90 Score=37.52 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=46.5
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQT 580 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~ 580 (724)
++...|+. |.-++...+..+|.|..+.+++-...+ +....-+||..+.+-...|+++|...-+.-.+|++=|.+=++.
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 555555555566666666655555544 4444566777777777777777776666666666666555533
No 296
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.32 E-value=1.1e+02 Score=37.43 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhhh
Q 004913 400 RVLLTMERRLVTAKTDMEDLITRLNQEM 427 (724)
Q Consensus 400 rvl~t~~~rl~~aktdmEDLiaRLnqe~ 427 (724)
.|+..-+..+..-..++|.||.+|+++.
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~ 529 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELE 529 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4666677777777778888888877654
No 297
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.27 E-value=3e+02 Score=32.53 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 514 LDATKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 514 l~~~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
|-...+.++-||+..+|+|-...+-.-+|-+|
T Consensus 455 LskKeeeverLQ~lkgelEkat~SALdlLkrE 486 (527)
T PF15066_consen 455 LSKKEEEVERLQQLKGELEKATTSALDLLKRE 486 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999999983333333333333
No 298
>PRK12705 hypothetical protein; Provisional
Probab=61.76 E-value=3.3e+02 Score=32.20 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004913 671 RTDNELREVIADILVDNAKLRKQVNSVL 698 (724)
Q Consensus 671 ~~d~elrk~lad~~idna~LRkq~Nsv~ 698 (724)
.+--.|+++++|=.|+.+++-.-+|++-
T Consensus 253 ia~~~l~~Li~dgri~p~rIeevv~~~~ 280 (508)
T PRK12705 253 IARLTLEKLLADGRIHPARIEEYVQKAN 280 (508)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3556677888877777777766666543
No 299
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.39 E-value=2e+02 Score=32.62 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=68.0
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-------cCCCCcccc
Q 004913 427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-------QDGNPHAES 499 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-------~~~~~~~e~ 499 (724)
+|.-+.|-||++.+=..=|+.| | + ||.+-.-|-||++|+-..+.+=..|-.- .++.-|.|.
T Consensus 67 ~aa~~llq~kirk~~e~~eglr--------~---i-~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 67 TAAGQLLQTKIRKITEKDEGLR--------K---I-RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HHHHHHHHHHHHHHHhccHHHH--------H---H-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4667788899887754444433 3 2 6777777899999998877654333221 233334444
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 500 MEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 500 ~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~ 565 (724)
......+||+ ..+-||..++++..|-|..+. -|-+|..--++=|.+|-.|-..-+.
T Consensus 135 li~~~~EEn~------~lqlqL~~l~~e~~Ekeeesq----~LnrELaE~layqq~L~~eyQatf~ 190 (401)
T PF06785_consen 135 LIRHLREENQ------CLQLQLDALQQECGEKEEESQ----TLNRELAEALAYQQELNDEYQATFV 190 (401)
T ss_pred HHHHHHHHHH------HHHHhHHHHHHHHhHhHHHHH----HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4444444444 334456666677766655443 3566666666666666555544433
No 300
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=61.37 E-value=34 Score=34.36 Aligned_cols=90 Identities=28% Similarity=0.352 Sum_probs=70.5
Q ss_pred chhhHhHHHHHHHHHHhhhhc----chHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh
Q 004913 394 QRHKLSRVLLTMERRLVTAKT----DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM 469 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~akt----dmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m 469 (724)
|=.-|.|.|.|..=|-...++ ...+|-.+|++--.-..=|..+|.|.|..|++.-.-.+..+++.|..=--|..-
T Consensus 78 Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~R- 156 (173)
T PF07445_consen 78 QIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQR- 156 (173)
T ss_pred HHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-
Confidence 334556666666555444444 568899999888777778999999999999988777889999999887777777
Q ss_pred hhcHHHHHHHHHHHHHHhccc
Q 004913 470 QWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 470 qwdmeelr~k~~e~E~~lks~ 490 (724)
||++....|..|.-.
T Consensus 157 ------Cr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 157 ------CRQAIEKIEEQIQRR 171 (173)
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 999999999887643
No 301
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=60.74 E-value=64 Score=30.67 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCcee
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKS-KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVI 618 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~~eK~-e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~ 618 (724)
+-|-++++.|.....++++++..+++... +..+++-+++.+.++...-.-..+.-+..+..+++....+-- +.
T Consensus 11 ~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~------v~ 84 (171)
T PF03357_consen 11 RRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQ------VV 84 (171)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 33344444444444444444444444322 334444455545555555555556666666666666655443 11
Q ss_pred cccCChhhHHHhhc--ccchhHHHHHHHHhhhhhhhhhhhhhhhhccc---CCCCCccchHHHHHHHHHHHHhhH
Q 004913 619 LESSSAADALALLT--SSDDQISLLITEAQLLAEDSKAAASADVEKAH---DNDVCTRTDNELREVIADILVDNA 688 (724)
Q Consensus 619 ~~~ss~~da~dlL~--tsDnrI~lLlaEaqll~~d~e~~~~~~~~~~~---~~~~~~~~d~elrk~lad~~idna 688 (724)
---...+.++.-+. .+=+.|.-++.+.+-...+.+. ....++... ...++..-++||.+++.++..+..
T Consensus 85 ~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~e-i~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~ 158 (171)
T PF03357_consen 85 KALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDE-ISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEE 158 (171)
T ss_dssp SS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS-----------------TTSTTCHHHHHHHCCCTTS-
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 11112233443331 1224566666676666554433 222222222 222334477788888877766543
No 302
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.63 E-value=3.4e+02 Score=31.99 Aligned_cols=154 Identities=15% Similarity=0.245 Sum_probs=77.4
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHH
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEEL 476 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeel 476 (724)
|.+..+..++..|..+.+++..+...|+.=...-+==...|..|..... .++..+++-|-.|+. -++.|
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~--------~lrk~ll~~~~~~G~---a~~~L 166 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYR--------ELRKELLAHSFSYGP---AIEEL 166 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhhch---hHHHH
Confidence 5566777777777777777777777776544433333333333333222 234455666666665 45566
Q ss_pred HHHHHHHHHHhccc-----cCCCCcccchhhhhHHHHh-HHHHHHH-----------HHHHHHHHHHHHHHHhhhccc-c
Q 004913 477 RQKSLEMEWKLKSK-----QDGNPHAESMEESTVKDKN-VLQELDA-----------TKEQLENLSKRYEELEAKSKA-D 538 (724)
Q Consensus 477 r~k~~e~E~~lks~-----~~~~~~~e~~~~s~~~e~~-~~qel~~-----------~~~~~e~l~k~~~elEakska-d 538 (724)
-.++.++|...... .++-.-+......+..+.. +.+.|+. +-.||+.|+.-|.++..+-=. .
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~ 246 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE 246 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC
Confidence 66666666666554 1111122222333333333 3333333 334555555555555543110 0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
-.-+-++++.++.+..++.+-|.
T Consensus 247 ~~~i~~~i~~i~~~l~~~~~~L~ 269 (560)
T PF06160_consen 247 HLDIEEEIEQIEEQLEEALALLK 269 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 11244556666665555554443
No 303
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.31 E-value=4.1e+02 Score=32.76 Aligned_cols=31 Identities=32% Similarity=0.249 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Q 004913 675 ELREVIADILVDNAKLRKQVNSVLRRALLFR 705 (724)
Q Consensus 675 elrk~lad~~idna~LRkq~Nsv~r~al~~~ 705 (724)
++...|++++-.-|-+++++=-+.|.-++.-
T Consensus 388 ~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~ 418 (716)
T KOG4593|consen 388 ELHETLARRLQKRALLLTQERDLNRAILGSK 418 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555677777777777777766666655443
No 304
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=60.15 E-value=2.7e+02 Score=30.63 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=49.3
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhh---------hhHHHHHHHHHhhHHHHHHHHHH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVK---------DLEVELETTKQKSKETLQQAILS 461 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvk---------DlE~eLe~t~~~~ke~lqQa~l~ 461 (724)
..|.+.|..+..-....+.--+.....|+.|...-+=+-.|-. .+=..|-+--.+-++.|+||.-.
T Consensus 72 ~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~s 146 (339)
T cd09235 72 QTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQA 146 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777777777777777778889999888887777763 35556777778888889998765
No 305
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.98 E-value=70 Score=36.21 Aligned_cols=19 Identities=26% Similarity=0.262 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHhccc
Q 004913 472 DMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~ 490 (724)
|+.-+|..-..+..+++..
T Consensus 3 Dik~ir~n~~~v~~~l~~R 21 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKAR 21 (418)
T ss_pred CHHHHHhCHHHHHHHHHhc
Confidence 4455666555555555555
No 306
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.60 E-value=4.9e+02 Score=33.48 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=66.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHH
Q 004913 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKD 507 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e 507 (724)
.|+.| ..++++|+..|+-.+..-.+..|++--. +-++-+.+-+...|-++.-.+-..+ ..+.+|
T Consensus 672 ~~~~~-~~~~~~l~~~L~~~r~~i~~~~~~i~q~-~~~~qk~e~~~~~~~~~~~~l~~e~--------------~~~k~e 735 (1200)
T KOG0964|consen 672 NVNES-RSELKELQESLDEVRNEIEDIDQKIDQL-NNNMQKVENDRNAFKREHEKLKREL--------------NTIKGE 735 (1200)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH--------------HHhhhH
Confidence 34444 4577888888887666655555543222 2222222223333333333333333 344444
Q ss_pred Hh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchh------------HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913 508 KN-VLQELDATKEQLENLSKRYEELEAKSKADIK------------VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL 573 (724)
Q Consensus 508 ~~-~~qel~~~~~~~e~l~k~~~elEakskad~K------------vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~ 573 (724)
+. +.+.+.....+|+.+.-+...+++++..=.- --...|++|+....+|.+++.++..+..+++..
T Consensus 736 ~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~r 814 (1200)
T KOG0964|consen 736 KSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETR 814 (1200)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4444555555555555444444444332111 123556777777777777777766666554443
No 307
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=59.42 E-value=38 Score=39.92 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHH-----------HHHHHHHhhhcccchhHHHH
Q 004913 477 RQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENL-----------SKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 477 r~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l-----------~k~~~elEakskad~KvLvK 544 (724)
..++.+|+.+++..+..+.-.-...+++.+|.+ +..++.+.++++++| ++++.++++..+.|.+-|..
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 455555666655554442222233356666666 666666655555544 45566666666666665542
Q ss_pred HHHHHhhh----------hHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 545 EVKFLRSS----------QIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 545 EVKsLR~s----------~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
=.- |..- ..++++=+.+++.-...++-.|+..+
T Consensus 270 ~~~-~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~~~~ 312 (555)
T TIGR03545 270 KYA-IKSGDLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLNKSK 312 (555)
T ss_pred HhC-CCcccHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccch
Confidence 111 1000 12445555666666666677777764
No 308
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=59.00 E-value=46 Score=34.74 Aligned_cols=61 Identities=31% Similarity=0.348 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH
Q 004913 524 LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVR 588 (724)
Q Consensus 524 l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar 588 (724)
+++.+.+|+++ -|-|-||.-.||-+|..|..|..+.+.+|.+.....++--+..|.++.+.
T Consensus 36 ~~~d~~~L~~~----Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~f 96 (228)
T PRK06800 36 IQKDHEELLAQ----QKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQF 96 (228)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777765 45688999999999999999999999999988877765544444444443
No 309
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.19 E-value=2.4e+02 Score=29.55 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 516 ATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 516 ~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
-+.++|+...++++.+..+..++...|--.+|...-...-|...|.|--+|..||.+|-
T Consensus 140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkIC 198 (207)
T PF05010_consen 140 HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKIC 198 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888887777776666667777777777777776653
No 310
>PF14282 FlxA: FlxA-like protein
Probab=57.96 E-value=61 Score=30.14 Aligned_cols=60 Identities=15% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 511 LQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
-..+..+++++..|++++.+|....-.+-+.--+-++-|-.+...|..++.++..++.+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888888888877774333434434445555555555555555555444443
No 311
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.65 E-value=2.5e+02 Score=33.45 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
++++++.+..+.-++++++. -|. .+.-++-.|.-+|=++.-.+++++.-.--||.++-.+|+.=+++. +
T Consensus 203 ~~KelrdtN~q~~s~~eel~---~kt-~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~-------~ 271 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQ---SKT-KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ-------R 271 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH-------H
Confidence 56677777777766665432 221 234455566666667777777777666677777777777655333 3
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 004913 590 KLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 590 kllhec~iL~~rLqEC~~~~~ 610 (724)
.+--|.+-|.++--||--+|-
T Consensus 272 ql~aE~~EleDkyAE~m~~~~ 292 (596)
T KOG4360|consen 272 QLTAELEELEDKYAECMQMLH 292 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666655553
No 312
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=57.14 E-value=2.5e+02 Score=29.26 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhh-hhhhcHHHHHHHHHHHH
Q 004913 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLT-QMQWDMEELRQKSLEME 484 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t-~mqwdmeelr~k~~e~E 484 (724)
.|=+||..|-..-+...+...+......+++-.. |+.+. ...=-+.+|...+.+.+
T Consensus 4 ~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~-r~~l~s~y~~q~~~Lq~qLlq~~ 60 (206)
T PF14988_consen 4 EFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRE-RQELVSRYAKQTSELQDQLLQKE 60 (206)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999998888888888888777777776533 44433 22223334444444433
No 313
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=57.10 E-value=2e+02 Score=28.20 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=69.0
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
.|.=+-|..-.+.-++|.++|..++.....|-...++...+. +-.+++.++++|..+....++.+-.. .. +
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~-------~ 75 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SN-------A 75 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-Hh-------H
Confidence 344455666667777788888777777777788888888888 88888888888888887777765321 11 1
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 547 KFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
-+|=+-..-|..||.++-+.-.++..-|.
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16666666777777777665555554444
No 314
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.00 E-value=5.4e+02 Score=33.18 Aligned_cols=127 Identities=25% Similarity=0.333 Sum_probs=63.9
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHH-----------HHHh-
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQA-----------ILSE- 462 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa-----------~l~E- 462 (724)
+.-|.--|.+++..+.+...+||.=+.-|- =|-.-+.|||.|+++.+|.+.+-+--| ++.|
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ 244 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQ 244 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Confidence 334555566666666666666664332111 123345678888888888776655433 2222
Q ss_pred --------hHhhh---hhhhcHHHHHHH------HHH-HHHHhccc--cCCCCcccchhhhhHHHHh-HHHHHHHHHHHH
Q 004913 463 --------RERLT---QMQWDMEELRQK------SLE-MEWKLKSK--QDGNPHAESMEESTVKDKN-VLQELDATKEQL 521 (724)
Q Consensus 463 --------rEr~t---~mqwdmeelr~k------~~e-~E~~lks~--~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~ 521 (724)
+||+. |.-=-+|||++- ..+ ||..|+-. +.+..-.|++.-...+..+ +..+.+.-|.+.
T Consensus 245 aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 245 AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 12222 122235666654 222 35556555 3444444444444444444 555666666655
Q ss_pred HHHHHHH
Q 004913 522 ENLSKRY 528 (724)
Q Consensus 522 e~l~k~~ 528 (724)
+.|+.+-
T Consensus 325 eeL~eEn 331 (1195)
T KOG4643|consen 325 EELHEEN 331 (1195)
T ss_pred HHHHHHH
Confidence 5555433
No 315
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=56.57 E-value=1.3e+02 Score=33.44 Aligned_cols=87 Identities=17% Similarity=0.296 Sum_probs=41.6
Q ss_pred HHHHhhhhhhHHHHHHHH---HhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccC-------CCCcccch
Q 004913 431 DYLMTKVKDLEVELETTK---QKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQD-------GNPHAESM 500 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~---~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~-------~~~~~e~~ 500 (724)
+||+.++-..|....+.+ ...+..|..-.|. +-.+|=|+..--.+..|||..++.+++ -.-..+..
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~----lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLA----LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 577765544444322222 2223333332222 224555555555555566666665532 22334444
Q ss_pred hhhhHHHHh-HHHHHHHHHHHH
Q 004913 501 EESTVKDKN-VLQELDATKEQL 521 (724)
Q Consensus 501 ~~s~~~e~~-~~qel~~~~~~~ 521 (724)
...+..|+- |.|+|+++....
T Consensus 223 L~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 223 LSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666 556666655433
No 316
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.35 E-value=2.6e+02 Score=29.35 Aligned_cols=177 Identities=15% Similarity=0.256 Sum_probs=78.1
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHH
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSL 481 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~ 481 (724)
+..++..+.....|++.|-.+.++. .++...+....+.|.++.++ +.=++..+..+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~-------~~~~~~l~~~t~~t~~~a~~---------------L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKV-------SRKAQQLNNNTERTLQRAQD---------------LEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 4445555555555555555555432 23333334444444433332 2222333455555
Q ss_pred HHHHHhccc-cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH----hhhhHH
Q 004913 482 EMEWKLKSK-QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL----RSSQIG 555 (724)
Q Consensus 482 e~E~~lks~-~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL----R~s~~~ 555 (724)
++-.++... +++.............|-+ ++++|... ++..++...|...++=.+ |-..|+.. ...+..
T Consensus 105 ~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-----~f~~~~~~Ae~El~~A~~-LL~~v~~~~~~~~~~~~~ 178 (264)
T PF06008_consen 105 ELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-----DFTPQRQNAEDELKEAED-LLSRVQKWFQKPQQENES 178 (264)
T ss_pred HHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhhHH
Confidence 555555444 2233334444566666666 66666322 122222222222222222 22222221 222222
Q ss_pred ----HHHHHHHHHHhHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 556 ----LKQELSQMLNEKSKTEELLQQERQT---HNHMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 556 ----lk~el~~~~~eK~e~E~~l~~Er~~---~e~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
++.-|+++--.-.++..+|++=... .+.-..+.++.|.++.-=+.+|++-.
T Consensus 179 l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 179 LAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555556666666542211 12233455666666666666666543
No 317
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.24 E-value=1.3e+02 Score=36.82 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=7.2
Q ss_pred HHHHHHHhhHHH
Q 004913 679 VIADILVDNAKL 690 (724)
Q Consensus 679 ~lad~~idna~L 690 (724)
..-|-|+|.|.+
T Consensus 719 ~~l~~fl~~a~~ 730 (782)
T PRK00409 719 ERLDKYLDDALL 730 (782)
T ss_pred HHHHHHHHHHHH
Confidence 344667777653
No 318
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=56.16 E-value=1.8e+02 Score=27.37 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=50.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhHHH---HHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhH
Q 004913 429 VKDYLMTKVKDLEVELETTKQKSKET---LQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTV 505 (724)
Q Consensus 429 vk~fL~tKvkDlE~eLe~t~~~~ke~---lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~ 505 (724)
....+..+|.+|+..-+...+.+.+. |++++ . ...++ ++..++..-+.+.|..|....... .-...+...
T Consensus 73 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~-~---~~~~~-~~~~~l~~wl~~~e~~l~~~~~~~--~~~~~~~~l 145 (213)
T cd00176 73 DAEEIQERLEELNQRWEELRELAEERRQRLEEAL-D---LQQFF-RDADDLEQWLEEKEAALASEDLGK--DLESVEELL 145 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHH-HHHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHH
Confidence 45566666666666655555444332 23322 1 11111 122235555556666665443222 112223344
Q ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913 506 KDKN-VLQELDATKEQLENLSKRYEELEAKSKADI 539 (724)
Q Consensus 506 ~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~ 539 (724)
.+.+ +..++...+..++.+......+........
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (213)
T cd00176 146 KKHKELEEELEAHEPRLKSLNELAEELLEEGHPDA 180 (213)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCc
Confidence 4444 555666666666666666666655554433
No 319
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.65 E-value=1.4e+02 Score=36.75 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHhhhhhh
Q 004913 400 RVLLTMERRLVTAKTDMEDLITRLNQEMT 428 (724)
Q Consensus 400 rvl~t~~~rl~~aktdmEDLiaRLnqe~a 428 (724)
.|+..-++-+..-+.++|+||+.|+++..
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEK 525 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 37777777778888889999988887643
No 320
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.53 E-value=2.6e+02 Score=35.94 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKS 535 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEaks 535 (724)
+-.++...++-+.++-....++|++.
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~ 411 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARI 411 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 321
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=55.50 E-value=5e+02 Score=34.14 Aligned_cols=162 Identities=21% Similarity=0.163 Sum_probs=83.6
Q ss_pred HHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHH
Q 004913 407 RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWK 486 (724)
Q Consensus 407 ~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~ 486 (724)
+.+.....+-+=++.++|-+..-..=|.+.|..+|-.+.-++...++.-+++.-. .-++. ----|+|++.+-..|-.+
T Consensus 757 ~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l-~~~~d-~i~t~~E~~~Ek~~~~~~ 834 (1294)
T KOG0962|consen 757 GDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSEL-DSSVD-GIRTVDELRKEKSKKQES 834 (1294)
T ss_pred HhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc-ccccc-chhhHHHHHHHHHHHHHH
Confidence 3444455555667888888888889999999999999988888888776664321 11000 011344444443333222
Q ss_pred hccc----------cCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHH
Q 004913 487 LKSK----------QDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGL 556 (724)
Q Consensus 487 lks~----------~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~l 556 (724)
+... ..+....-..++.+..+ +......+..++..+++--++++ ....++-.++.+|+-+-....-+
T Consensus 835 ~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e--~k~~~~~~~~~l~~~~qle~~~~-~l~e~~~~~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 835 LDKLRKEIECLQKEVIEQEREISRLINLRNE--LKEEKQKIERSLARLQQLEEDIE-ELSEEITRLDSKVKELLERIQPL 911 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhHhhhcch
Confidence 2221 00000000000000000 11222223333333332222222 22234556677777777777777
Q ss_pred HHHHHHHHHhHHHHHHH
Q 004913 557 KQELSQMLNEKSKTEEL 573 (724)
Q Consensus 557 k~el~~~~~eK~e~E~~ 573 (724)
+.+|.+++.+|.++++=
T Consensus 912 ~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 912 KVELEEAQSEKEELKNE 928 (1294)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888877776653
No 322
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=55.42 E-value=2.8e+02 Score=29.34 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=73.5
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
.+..+.+ +--.|..+..+||...++-+.-|.+++ -|.+++--..|+|+.+...+-+.+..|-.+-..+..=|-+=.
T Consensus 78 ~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 78 KADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 3444555 667888888999998888888887775 478889999999999999888888888777666666555555
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913 579 QTHNHMKTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 579 ~~~e~~~~ar~kllhec~iL~~rLq 603 (724)
.+-+++.-+=.||=.++.-|...|-
T Consensus 158 ~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 158 TRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred hhHHHHHHHHHHHcccHHHHHHhhH
Confidence 5666666555666666655554443
No 323
>PF13166 AAA_13: AAA domain
Probab=55.35 E-value=4.2e+02 Score=31.37 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=71.2
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 004913 535 SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEE 614 (724)
Q Consensus 535 skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~ 614 (724)
.+.++..+.++++.+......+++++..+-.+....++-+.+=++..-....+-..+=.++..| -.....+.+-.+ .
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~--g~~~~~l~~~~~-~ 484 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL--GFSNFSLEIVDD-D 484 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCeEEEEecC-C
Confidence 3344445566666666666666666666655555555554333333233344455555555555 112222222222 2
Q ss_pred CceecccCChhhHHHhhcccchhHHHH---HHHHhhhhhhhhhhhhhhhhcccCCCCCcc-chHHHHHHHHHHHHhhH--
Q 004913 615 DNVILESSSAADALALLTSSDDQISLL---ITEAQLLAEDSKAAASADVEKAHDNDVCTR-TDNELREVIADILVDNA-- 688 (724)
Q Consensus 615 ~~~~~~~ss~~da~dlL~tsDnrI~lL---laEaqll~~d~e~~~~~~~~~~~~~~~~~~-~d~elrk~lad~~idna-- 688 (724)
+...+.......+..-|+.-+-++=-| ||++. ...+. . ...+.--.||-+. =|..-|-.++.++.+-.
T Consensus 485 ~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~---~~~~~--~-~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~ 558 (712)
T PF13166_consen 485 KGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELK---EDDED--I-NKKKIIVIDDPISSLDHNRRFGVASRLKEEIKN 558 (712)
T ss_pred CeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHh---hcccc--c-CcCceEEECCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 223333323344557777777775322 44444 11111 0 1223334455444 44555555666666554
Q ss_pred HHHHH
Q 004913 689 KLRKQ 693 (724)
Q Consensus 689 ~LRkq 693 (724)
.-.+|
T Consensus 559 ~~~~Q 563 (712)
T PF13166_consen 559 SKFRQ 563 (712)
T ss_pred CCcce
Confidence 33444
No 324
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=55.07 E-value=13 Score=31.69 Aligned_cols=41 Identities=34% Similarity=0.425 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 520 QLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 520 ~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
.|+..-++|-+ .-.|+.-|..|+.+||.++.+|+.=|.|++
T Consensus 20 ~L~~~l~rY~~----vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 20 ALENFLKRYNK----VLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444455553 346788899999999999999999998875
No 325
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.91 E-value=2.5e+02 Score=31.61 Aligned_cols=154 Identities=25% Similarity=0.288 Sum_probs=103.9
Q ss_pred cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhh
Q 004913 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQ 470 (724)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mq 470 (724)
|.+=+--|.||+-.| =+++++|-.|--++|-|.-..+.=+.+.+.+....|+..-+.-...|+.--.-|+-.=.|+.
T Consensus 193 ~~eWklEvERV~PqL---Kv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 193 PAEWKLEVERVLPQL---KVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred HHHHHHHHHHHhhhh---eeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 667788899999888 46788999999999999999999999999999999999888888888887766665555644
Q ss_pred hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 004913 471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL 549 (724)
Q Consensus 471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL 549 (724)
=-+.+.|....++...-..+ ..+.+-.. +.++|..+-++||..+++.+|-.+ +=+|-.=||| +
T Consensus 270 ~l~~eYr~~~~~ls~~~~~y-----------~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~-~mtD~sPlv~----I 333 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQEKY-----------KQASEGVSERTRELAEISEELEQVKQEMEERGS-SMTDGSPLVK----I 333 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHH----H
Confidence 44444444333332221111 22333333 566777777777777777766543 3345444443 4
Q ss_pred hhhhHHHHHHHHHH
Q 004913 550 RSSQIGLKQELSQM 563 (724)
Q Consensus 550 R~s~~~lk~el~~~ 563 (724)
|.....||+|+.++
T Consensus 334 KqAl~kLk~EI~qM 347 (359)
T PF10498_consen 334 KQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555666666553
No 326
>PF13514 AAA_27: AAA domain
Probab=54.80 E-value=5.6e+02 Score=32.64 Aligned_cols=7 Identities=29% Similarity=0.728 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 004913 111 IPPAPPK 117 (724)
Q Consensus 111 LPpLPPK 117 (724)
+|.||+.
T Consensus 233 ~~~~p~~ 239 (1111)
T PF13514_consen 233 VPDFPED 239 (1111)
T ss_pred cCCCChh
Confidence 4455544
No 327
>PLN02678 seryl-tRNA synthetase
Probab=54.15 E-value=60 Score=37.39 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYE 529 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~ 529 (724)
++++++..+.+...++++..
T Consensus 45 l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 328
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.93 E-value=62 Score=33.24 Aligned_cols=52 Identities=27% Similarity=0.403 Sum_probs=31.6
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHH---HHHhhhhhhHHHHHHH
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKD---YLMTKVKDLEVELETT 447 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~---fL~tKvkDlE~eLe~t 447 (724)
+..+...+.||.. |..-==|...|.+|||.-..+|+ -+....|.+|.+++.-
T Consensus 68 ~~~f~~~~~tl~~-LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 68 RSSFESLMKTLSE-LEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHH-HHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445544444432 33344577789999999888887 4444455566655543
No 329
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.45 E-value=2.6e+02 Score=28.51 Aligned_cols=151 Identities=22% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCceEEeccc---chhhHhHHHHHHHHHHhhhhcchHH---------------HHHHhhhhhhHHHHHHhhhhhhHHHHH
Q 004913 384 GDAELVIPLD---QRHKLSRVLLTMERRLVTAKTDMED---------------LITRLNQEMTVKDYLMTKVKDLEVELE 445 (724)
Q Consensus 384 ~d~~~vlp~d---~r~kl~rvl~t~~~rl~~aktdmED---------------LiaRLnqe~avk~fL~tKvkDlE~eLe 445 (724)
+...+.+|+- -|.-+-.+...|+.+|...++..-. ||.-.-=+-+=|+.|--||+|= +.
T Consensus 18 ~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde---~~ 94 (189)
T PF10211_consen 18 GQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDE---YR 94 (189)
T ss_pred CeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHH---HH
Confidence 3444555554 4777788888888888888776432 2222222334477888888763 33
Q ss_pred HHHHhhHHHHHHHHH-HhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHH
Q 004913 446 TTKQKSKETLQQAIL-SERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLEN 523 (724)
Q Consensus 446 ~t~~~~ke~lqQa~l-~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~ 523 (724)
.|...-+...+.++- .-|..+-..|+ +.++..+. ..+..++. |..++...+...+.
T Consensus 95 ~~l~~y~~l~~s~~~f~~rk~l~~e~~-~~~l~~~i---------------------~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 95 MTLDAYQTLYESSIAFGMRKALQAEQG-KQELEEEI---------------------EELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222221 10111111110 11222222 22222333 44444444444444
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 524 LSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 524 l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
+.++..+. -....|....||..|+.++..|+.+|.+
T Consensus 153 ~ek~~~e~---~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 153 LEKREEEL---RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44333222 2245677899999999999999998875
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.30 E-value=3.5e+02 Score=29.84 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
++.+|.-+|--||-.-..|.|||-
T Consensus 158 Eke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888873
No 331
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.67 E-value=6.4e+02 Score=32.69 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=13.5
Q ss_pred cchhhHhHHHHHHHHHHhhhhcc
Q 004913 393 DQRHKLSRVLLTMERRLVTAKTD 415 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~aktd 415 (724)
..++|+-|=+.++.+.+-.-.+.
T Consensus 262 ~e~~ki~re~~~~Dk~i~~ke~~ 284 (1141)
T KOG0018|consen 262 KERGKIRRELQKVDKKISEKEEK 284 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776666655444333
No 332
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=52.61 E-value=88 Score=29.69 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
.+|-+||++|+...+. |+..+.+.|..| -.+.+|++ |-=.-+..-+-++.||.+.+..
T Consensus 15 ~vLKKaVieEQ~k~~~-------L~e~Lk~ke~~L--------------Rk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAE-------LKEQLKEKEQAL--------------RKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999988887 555555555444 33455666 4444555566677788877777
Q ss_pred hhhcccch
Q 004913 532 EAKSKADI 539 (724)
Q Consensus 532 Eakskad~ 539 (724)
+.+++..+
T Consensus 74 ~~~~~k~~ 81 (102)
T PF10205_consen 74 EQKSKKKK 81 (102)
T ss_pred hccccccc
Confidence 66665544
No 333
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=52.33 E-value=55 Score=30.04 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc------chhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKA------DIKVLVKEVKFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakska------d~KvLvKEVKsLR~s~~~lk~el~~~~~ 565 (724)
.|+|...+.+.....+.+.+|-+.+. +++-|.||..+|.+......+||...-+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 35555555555555566666655543 6788899999999998888888877655
No 334
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.18 E-value=3.5e+02 Score=29.53 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=55.6
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc---ccc
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS---KAD 538 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks---kad 538 (724)
++...|++=.++++++++.+.|.+|+..++.+.......+ -. ..+.+...+.++..+..++.++.... =-+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~-----~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ-----SSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 3444555666777999999999999999887777654221 11 33344455555555555555544322 234
Q ss_pred hhHHHHHHHHHhhhhHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQEL 560 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el 560 (724)
++.|-.++..|+.+..+..+.+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666654444433
No 335
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=52.18 E-value=4.4e+02 Score=32.08 Aligned_cols=104 Identities=24% Similarity=0.202 Sum_probs=62.8
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHHHH--HhhHhhhhhhhcHHHHHHHHHHHHHHhccccC---CCCcccchhhhhHHH--
Q 004913 435 TKVKDLEVELETTKQKSKETLQQAIL--SERERLTQMQWDMEELRQKSLEMEWKLKSKQD---GNPHAESMEESTVKD-- 507 (724)
Q Consensus 435 tKvkDlE~eLe~t~~~~ke~lqQa~l--~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~---~~~~~e~~~~s~~~e-- 507 (724)
..++|.+..++.-.|+.-.-|+-++. .||-. +-.+||+++.+... -+.+.+.+......+
T Consensus 10 ~~~~d~~~~~~~~~q~gL~~le~~~~~~~era~-------------~ek~y~~~l~~l~~k~~~q~~~~d~v~~~~~~q~ 76 (640)
T KOG3565|consen 10 RELKDAFKATEQSTQNGLDWLERIVQFLKERAD-------------KEKEYEEKLRSLCKKFEFQSKSGDEVAESVSGQP 76 (640)
T ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHhcchhH-------------HHHHHHHHHHHhhhHhhcCCcccchHHHHhccCc
Confidence 46889999998888887766655543 44443 33466666665533 222333322222222
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHHHH----------hhhcccchhHHHHHHHHHhh
Q 004913 508 --KNVLQELDATKEQLENLSKRYEEL----------EAKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 508 --~~~~qel~~~~~~~e~l~k~~~el----------Eakskad~KvLvKEVKsLR~ 551 (724)
.+++|+...++.+++-|+++..++ ..+-++..|-++-+...+|+
T Consensus 77 ~~~~~lq~~~~i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~ 132 (640)
T KOG3565|consen 77 LFSELLQRAQQIATRLEILKIEDEEVKKSLEATLKTSLDLVAQRKQLESDLFQARN 132 (640)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 228888999999988886555443 23445566666667777774
No 336
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=51.97 E-value=1.6e+02 Score=29.17 Aligned_cols=52 Identities=29% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 521 LENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 521 ~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
+|+|=.+..++.. -+|....|+---++=...|++||+-.-.||.-+|.||++
T Consensus 8 iE~LInrInelQQ----aKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk 59 (134)
T PF15233_consen 8 IEDLINRINELQQ----AKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK 59 (134)
T ss_pred HHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444444443 234445555555555556777777777777777766663
No 337
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=51.90 E-value=1.1e+02 Score=30.86 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcchHHHHHHhh
Q 004913 403 LTMERRLVTAKTDMEDLITRLN 424 (724)
Q Consensus 403 ~t~~~rl~~aktdmEDLiaRLn 424 (724)
..++.=|..+.-...+++.||+
T Consensus 77 ~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3333334444444444444443
No 338
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=51.57 E-value=3.1e+02 Score=28.71 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=48.9
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhh---------hhHHHHHHHHHhhHHHHHHHHHHhhH
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVK---------DLEVELETTKQKSKETLQQAILSERE 464 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvk---------DlE~eLe~t~~~~ke~lqQa~l~ErE 464 (724)
-.+|.+.|..+..-...+++...+.-.+|..|..--+=+..|.. .+=..+-..-++.+..|+||.-.-..
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~ 102 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQ 102 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45788888888888888999999999999988876655555542 23345555566666677776655333
No 339
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.29 E-value=6.2e+02 Score=32.17 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhHH
Q 004913 675 ELREVIADILVDNAK 689 (724)
Q Consensus 675 elrk~lad~~idna~ 689 (724)
-++.++..+.++|.-
T Consensus 893 kf~~~~~~~~~~~~~ 907 (1047)
T PRK10246 893 KFRKFAQGLTLDNLV 907 (1047)
T ss_pred hHHHHHHHHHHHHHH
Confidence 466777666665544
No 340
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=51.23 E-value=2.3e+02 Score=27.13 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=29.9
Q ss_pred hHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHHHhhHHHHH
Q 004913 416 MEDLITRLNQEMTVKDYLM--TKVKDLEVELETTKQKSKETLQ 456 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~--tKvkDlE~eLe~t~~~~ke~lq 456 (724)
+++|-.=|+.+..+.+|+. ..|+++..+.+.++..+..--+
T Consensus 6 ~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe 48 (150)
T PF07200_consen 6 TEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAE 48 (150)
T ss_dssp THHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888889999988 5589999999988887765443
No 341
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=5.8e+02 Score=32.23 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHhhhhc---chHHHHHHhhhhhhHHHHHH------hhhhhhHHHHHHHHHhhHH
Q 004913 398 LSRVLLTMERRLVTAKT---DMEDLITRLNQEMTVKDYLM------TKVKDLEVELETTKQKSKE 453 (724)
Q Consensus 398 l~rvl~t~~~rl~~akt---dmEDLiaRLnqe~avk~fL~------tKvkDlE~eLe~t~~~~ke 453 (724)
...+...++-+++++.+ |-|- |+.-++.|+. +|.|++=-+++++.+.+|+
T Consensus 620 f~kL~kele~~i~k~ls~~~eee~------~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 620 FKKLFKELEGLIAKLLSSKTEEEE------QTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCccch------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555566666666544 3332 2333455543 6777777777766665554
No 342
>PF14992 TMCO5: TMCO5 family
Probab=50.31 E-value=1.6e+02 Score=32.27 Aligned_cols=95 Identities=26% Similarity=0.253 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccc------cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHH----HHHhhh-cccchhHHH
Q 004913 476 LRQKSLEMEWKLKSK------QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRY----EELEAK-SKADIKVLV 543 (724)
Q Consensus 476 lr~k~~e~E~~lks~------~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~----~elEak-skad~KvLv 543 (724)
|=+|+++.|.++|+. -++....+.....+..+.+ .+++|+--...||-=.+.. .++.-| ++-..+ ++
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~-~~ 101 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETN-VQ 101 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC-CC
Confidence 445677777776663 3334444445566666666 6666665555555544444 555544 333344 55
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E 571 (724)
-|.-.+..+..+.|..+.++...=..+|
T Consensus 102 ~e~~~~~~~lq~sk~~lqql~~~~~~qE 129 (280)
T PF14992_consen 102 CEDPQLSQSLQFSKNKLQQLLESCASQE 129 (280)
T ss_pred CCccchhcccHHhhhhHHHHHHHHHHHH
Confidence 6777777777777766666554433333
No 343
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=50.30 E-value=58 Score=38.50 Aligned_cols=168 Identities=24% Similarity=0.250 Sum_probs=34.4
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHH-HHH-------hhhhhhHHHHHHHHHhhHHHHHHHHHHhhHh
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKD-YLM-------TKVKDLEVELETTKQKSKETLQQAILSERER 465 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~-fL~-------tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr 465 (724)
.+.+|...-...++++....+.++.|-.||.--..-++ |+. .-+.-+|.||+....-.+++|..-|..=|..
T Consensus 215 ~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~e 294 (619)
T PF03999_consen 215 LLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQE 294 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666666677788888888889999986555544 653 4578899999999999999999998887777
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhcc----ccCCCC-----cccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKS----KQDGNP-----HAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSK 536 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks----~~~~~~-----~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEaksk 536 (724)
|-. |-.+|+=.+..-+. ..|... ..|.....+.++.+..+.+-..=++.+.|-++..+||++++
T Consensus 295 i~e-------lWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~ 367 (619)
T PF03999_consen 295 IEE-------LWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSK 367 (619)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 765 33333321111111 111111 11222223333333344444444566777788889998886
Q ss_pred cchhHHH---------HHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 537 ADIKVLV---------KEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 537 ad~KvLv---------KEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
-.-.++. |+=|.|-+....|.++|...+.++.
T Consensus 368 D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE 408 (619)
T PF03999_consen 368 DPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWE 408 (619)
T ss_dssp -CCGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4433322 3334444555555555555555444
No 344
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.18 E-value=1.9e+02 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+...+++=|-.|.++..++.+.+.-.-..|.+++.-+.
T Consensus 52 q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 52 QNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 345
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.90 E-value=1.6e+02 Score=36.21 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHH----HHHHHHHHHh-HHHHHHHHHHHHHh
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGL----KQELSQMLNE-KSKTEELLQQERQT 580 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~l----k~el~~~~~e-K~e~E~~l~~Er~~ 580 (724)
++++|...+.++|...++.+.+.+..+..++-|-++.+.|+....++ ++|..+++++ |.++++++.+-|++
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~ 591 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEK 591 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555444433 3333333332 44566666666654
No 346
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=49.45 E-value=3.8e+02 Score=29.17 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=41.3
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhh----------hHHHHHHHHHhhHHHHHHHHHHhhHh
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD----------LEVELETTKQKSKETLQQAILSERER 465 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkD----------lE~eLe~t~~~~ke~lqQa~l~ErEr 465 (724)
..+.+.|..|..-......--...-.+|+.|...-+-+-.|... +=.+|-.--.+-+..|+||.-.=...
T Consensus 73 ~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 152 (342)
T cd08915 73 DNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEV 152 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34555566665555555555556666677776655555555433 22456666667777888887653333
No 347
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.42 E-value=3.4e+02 Score=28.56 Aligned_cols=170 Identities=12% Similarity=0.186 Sum_probs=94.5
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEE 475 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmee 475 (724)
.+|..=+..|+.+...+.++-+.+-... +=...+.++|+..+..+.++-.+.+.|+.---. ...+=.-++
T Consensus 55 ~~L~~d~~~L~~k~~~~~~~~~~l~~~t-------~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~---~~~~~~~~~ 124 (264)
T PF06008_consen 55 ESLEQDVENLQEKATKVSRKAQQLNNNT-------ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE---NGDQLPSED 124 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---ccCCCCHHH
Confidence 3445556666666666666666654433 335568899999999999999999988854422 233334456
Q ss_pred HHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhH
Q 004913 476 LRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQI 554 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~ 554 (724)
|.+++-|-+.-|+..+.-. ....++.+..|.. ...=|..+++.|...+++-..+ ++-+..-+...-...+
T Consensus 125 l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l-------~~~i~~~L~~~~~kL~ 195 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL-------AEAIRDDLNDYNAKLQ 195 (264)
T ss_pred HHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH-------HHHHHHHHHHHHHHHH
Confidence 6666666666666654332 1122222333333 2222333343333333333222 1222233344555667
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913 555 GLKQELSQMLNEKSKTEELLQQERQTHNHM 584 (724)
Q Consensus 555 ~lk~el~~~~~eK~e~E~~l~~Er~~~e~~ 584 (724)
+|..-|.++...=.+.+++...=+..-+..
T Consensus 196 Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~ 225 (264)
T PF06008_consen 196 DLRDLLNEAQNKTREAEDLNRANQKNLEDL 225 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888777777777776655444433
No 348
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.33 E-value=4.3e+02 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004913 567 KSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600 (724)
Q Consensus 567 K~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~ 600 (724)
-.|.|....-..++-..+..-..|+..++.-|..
T Consensus 436 l~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 436 LREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444444444444445555555554443
No 349
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.75 E-value=5.8 Score=47.22 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred HhhhhcchHHHHHHhhhhh----hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 409 LVTAKTDMEDLITRLNQEM----TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 409 l~~aktdmEDLiaRLnqe~----avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
....+.+.+.|-.|+++-. .-...+..+.-+|-..++..++...+ ++.+..+-|.++..++=++.+||++..+
T Consensus 209 ~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~-~e~~~~d~~~~~e~le~ei~~L~q~~~e 285 (713)
T PF05622_consen 209 KESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELER-LEEQRDDLKIELEELEKEIDELRQENEE 285 (713)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444554422 12334444455555555555554433 3445555566666666566666666554
No 350
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=48.61 E-value=2.4e+02 Score=26.60 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=25.2
Q ss_pred HHHHHHhhhh-hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhh
Q 004913 417 EDLITRLNQE-MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL 466 (724)
Q Consensus 417 EDLiaRLnqe-~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~ 466 (724)
+++.++|.+. .++.+=|..++.++...|+.....-+..+...+-.=+..|
T Consensus 26 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l 76 (202)
T PF01442_consen 26 DEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEELKNSL 76 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 3455555666666666666555555555554443333333
No 351
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.55 E-value=3.4e+02 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 536 KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 536 kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
.++++.|.+|+.+|+..+.+++..+...-++..++
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555544444444
No 352
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.23 E-value=3.8e+02 Score=34.35 Aligned_cols=127 Identities=25% Similarity=0.334 Sum_probs=64.0
Q ss_pred hhcchHHHHHHhhhhhh---------HHHHHHhh--hhhhHHHHHHHHHhhHHHHH-HHHHHhhHhhhhh-------hhc
Q 004913 412 AKTDMEDLITRLNQEMT---------VKDYLMTK--VKDLEVELETTKQKSKETLQ-QAILSERERLTQM-------QWD 472 (724)
Q Consensus 412 aktdmEDLiaRLnqe~a---------vk~fL~tK--vkDlE~eLe~t~~~~ke~lq-Qa~l~ErEr~t~m-------qwd 472 (724)
|+.+||.=+.=|-=+.- |-++|+.| +||+=.|+|..|+.-.-.-+ +-|.+=.|+.+|+ +=.
T Consensus 370 a~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ 449 (1041)
T KOG0243|consen 370 AKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQ 449 (1041)
T ss_pred CcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHH
Confidence 45566665555522221 23566655 58888888777664332211 1233334555543 223
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD 538 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad 538 (724)
++++-.+....+..|+..+.--.+....++.+..+++ +..+|...-+.++++++++.++.++.+..
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444555555555 55566666666666666666666654433
No 353
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=48.04 E-value=75 Score=36.51 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh
Q 004913 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~ 509 (724)
+=|.+||.||+.-.|..|. ++.+.-|-.----+..++=|+..+...+.+|+..++.+ ..=+..-|..++.+.+|-+
T Consensus 216 d~Ll~kVdDLQD~VE~LRk---DV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQq 292 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRK---DVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQ 292 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776653 34444444433334455556666777777777777766 2223333445566666655
Q ss_pred -HHHH---HHHHHHHHHHHHHHHHHHhh
Q 004913 510 -VLQE---LDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 510 -~~qe---l~~~~~~~e~l~k~~~elEa 533 (724)
+.-+ +.++++.++.+..=+.-+|.
T Consensus 293 fL~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 293 FLKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 23444444444444444443
No 354
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=47.75 E-value=84 Score=33.68 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHH
Q 004913 563 MLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLI 642 (724)
Q Consensus 563 ~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLl 642 (724)
..-++.++++.+..|++..+.+--- ..=+-||+-||+|++-|.-++- +|-| -+-+=|||-++||.=.
T Consensus 69 ~~ae~~~l~~~~k~~~e~~eLkdk~-~rs~Ad~eNlr~R~~r~~edak-----~Fai----Q~f~kdLleVaD~Le~--- 135 (236)
T KOG3003|consen 69 SLAEKALLEKVLKLEKEEQELKDKY-LRSLAECENLRDRTIRDVEDAK-----KFAI----QSFCKDLLEVADNLEK--- 135 (236)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHH----HHHHHHHHHHHHHHHH---
Confidence 3344555555555555444443222 2336799999999999976542 2322 3456778877776432
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 004913 643 TEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELREVIADILVDNAKLRKQVNSVLRRA 701 (724)
Q Consensus 643 aEaqll~~d~e~~~~~~~~~~~~~~~~~~~d~elrk~lad~~idna~LRkq~Nsv~r~a 701 (724)
| ...+.... ....-.+-|.|+|---..+++|+=+|.+++
T Consensus 136 --a-----------~~~v~ee~-------~~~d~~~~L~~l~eGl~mte~ql~~vf~Kh 174 (236)
T KOG3003|consen 136 --A-----------TECVKEES-------EKEDQKKDLKDLFEGLSMTEAQLKEVFAKH 174 (236)
T ss_pred --H-----------HHhcchhh-------cccccchHHHHHHhHHHHHHHHHHHHHHHc
Confidence 1 11111111 111234678888888888999998888765
No 355
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.75 E-value=3.7e+02 Score=28.54 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s 552 (724)
|+.-++..+||..|+.. ..+.. ..++|....+....|.++....|. +.+.|.++..-+..-
T Consensus 1 E~aEr~k~Ele~rL~q~--------------eee~~~a~~~L~e~e~~a~~Leek~k~aee----ea~~Le~k~~eaee~ 62 (246)
T PF00769_consen 1 EEAEREKQELEERLRQM--------------EEEMRRAQEALEESEETAEELEEKLKQAEE----EAEELEQKRQEAEEE 62 (246)
T ss_dssp HHHHHHCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
...|+.+......+|..|+.=+..=-.....-..+..+--.|+.-|+++|.+
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=47.29 E-value=4.5e+02 Score=29.38 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=5.6
Q ss_pred CCeEEEEEEE
Q 004913 65 DPVVFYRVQV 74 (724)
Q Consensus 65 k~yVvY~IqV 74 (724)
+|.++..|.|
T Consensus 28 kpia~ikisv 37 (445)
T KOG2891|consen 28 KPIAKIKISV 37 (445)
T ss_pred ccceeEEEEE
Confidence 3555566665
No 357
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.23 E-value=1.2e+02 Score=27.69 Aligned_cols=68 Identities=26% Similarity=0.393 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHH
Q 004913 451 SKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYE 529 (724)
Q Consensus 451 ~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~ 529 (724)
--...||||=+ |+-+|-++|||..|-.......+... .....+.+|++ +.+|...-++.+-.|--+.+
T Consensus 9 LE~KIqqAvdt----I~LLqmEieELKekn~~L~~e~~~~~-------~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 9 LEAKVQQAIDT----ITLLQMEIEELKEKNNSLSQEVQNAQ-------HQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567888866 99999999999998877776665542 23456777888 88888888877777654443
No 358
>PF13166 AAA_13: AAA domain
Probab=46.90 E-value=5.6e+02 Score=30.35 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913 556 LKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 556 lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLq 603 (724)
+++.+..+.+++..+++.++.-......++..-.++-.++..|++++.
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555444444444444555555566665554
No 359
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=46.59 E-value=2.7e+02 Score=26.60 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVR-EKLLHECRILL 599 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar-~kllhec~iL~ 599 (724)
.|.-..+.|.-++.....-++.+-++.+++.-+|++..+-.........-+ .|++-|.+..+
T Consensus 79 ~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~~~~~~~e~r~EQk~~DE~a~~~ 141 (146)
T PRK07720 79 TIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEMFALEEKAAEMKEMDEISIQQ 141 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556788888888888889999999999999999766654444432222 36777877654
No 360
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=46.45 E-value=63 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 004913 591 LLHECRILLNRFQACNA 607 (724)
Q Consensus 591 llhec~iL~~rLqEC~~ 607 (724)
-.+|.+-|||=+.||.+
T Consensus 27 Q~kE~~~LRntI~eC~a 43 (45)
T PF11598_consen 27 QIKETRFLRNTIMECQA 43 (45)
T ss_dssp HHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34677778888888853
No 361
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.31 E-value=4e+02 Score=28.53 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=28.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhh
Q 004913 427 MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ 468 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~ 468 (724)
+|+-+|++.-..++...|+...++-...+++-+...+.++..
T Consensus 135 taaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~ 176 (319)
T PF02601_consen 135 TAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQ 176 (319)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777666666666665555555
No 362
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.22 E-value=6.6e+02 Score=31.04 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhh
Q 004913 568 SKTEELLQQERQTHN 582 (724)
Q Consensus 568 ~e~E~~l~~Er~~~e 582 (724)
.++=.+|++|.++-+
T Consensus 274 ~~tv~~LqeE~e~Lq 288 (716)
T KOG4593|consen 274 RETVGLLQEELEGLQ 288 (716)
T ss_pred hhhhHHHHHHHHHHH
Confidence 334445555554443
No 363
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=46.14 E-value=1.7e+02 Score=32.96 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH--HHhhhhHHH
Q 004913 517 TKEQLENLSKRYEELEAKSK--------ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE--RQTHNHMKT 586 (724)
Q Consensus 517 ~~~~~e~l~k~~~elEaksk--------ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E--r~~~e~~~~ 586 (724)
..+.++.+.+++.++|.... +..+-+.||.+.|+.....+++ +.....+-.++..+++.| .+..+.+..
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~-~~~~~~~~~~~~~l~~~e~D~~~~~~~~~ 82 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYRE-YKQAQEDLEEAKEMLEEESDPEMREMAKE 82 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 34556666677777775432 2334567888888877666554 666677777777777643 223334444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004913 587 VREKLLHECRILLNRFQ 603 (724)
Q Consensus 587 ar~kllhec~iL~~rLq 603 (724)
.-.++-.++.-|..+|+
T Consensus 83 e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 83 ELKELEERLEELEEELK 99 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666655553
No 364
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.10 E-value=92 Score=31.15 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYE 529 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~ 529 (724)
...++++.++|.|.|+++||
T Consensus 173 ~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 44566777777777777764
No 365
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.05 E-value=2.8e+02 Score=27.16 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=60.7
Q ss_pred hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhcccc
Q 004913 416 MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ 491 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~ 491 (724)
+|.+-+.|. +.|..|+-++.-|...|+....-.+..-.+..-. |+-+.++.-|++.+.+....+|.|+.+.+
T Consensus 52 l~~vs~~l~---~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v-~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 52 LEQVSESLS---STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV-REDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555554 6899999999999999999888887777776666 99999999999999999999999997764
No 366
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.01 E-value=4.1e+02 Score=28.59 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHH
Q 004913 511 LQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~ 555 (724)
-+|++..+.|-.-+.+...|++-+ .++..|+-+.++++..+
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~----qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEK----QDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445666666666666677776654 34555666666665544
No 367
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=45.82 E-value=3.4e+02 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004913 521 LENLSKRYEELEAKSKADIKVLVKEVKFLRSSQI-GLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILL 599 (724)
Q Consensus 521 ~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~-~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~ 599 (724)
+.-|+.+.++=++.+- .|+-|+|-||.++. |-|+-..|+ ..++++..+.+.||.+||
T Consensus 87 V~~Lqd~~~~hksa~~----aLas~L~~Lr~q~e~e~keaa~qL------------------~~~~a~L~~v~~ERD~Lr 144 (152)
T PF15186_consen 87 VQWLQDQAEEHKSAAW----ALASELKRLREQREMERKEAAFQL------------------QLTQAALQEVQKERDLLR 144 (152)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 3445555565555554 69999999998854 212111111 146788889999999999
Q ss_pred HHHh
Q 004913 600 NRFQ 603 (724)
Q Consensus 600 ~rLq 603 (724)
.||=
T Consensus 145 ~kLl 148 (152)
T PF15186_consen 145 WKLL 148 (152)
T ss_pred HHHH
Confidence 9973
No 368
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=2.4e+02 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 525 SKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 525 ~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
.++++|.-+.-+.-+....+|+|.+-++...+.++.+.
T Consensus 64 kqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478|consen 64 KQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677766666777788999999998888877777654
No 369
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.62 E-value=91 Score=26.98 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK 557 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk 557 (724)
+.=++ +.+||..++.-.-.+.++..+.|++.+ -|..||+.|+....+++
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~----eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNR----ELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 34455 778888888888888888888887754 46677777766655443
No 370
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=45.45 E-value=6.1e+02 Score=30.36 Aligned_cols=157 Identities=16% Similarity=0.262 Sum_probs=74.9
Q ss_pred hhhHhHHHHHH-HHHHhh---hhcchHHHHHHhhhhhhH-HHHHHhhhhhhHHHHHHHHHhhHHHH-------HHHHHHh
Q 004913 395 RHKLSRVLLTM-ERRLVT---AKTDMEDLITRLNQEMTV-KDYLMTKVKDLEVELETTKQKSKETL-------QQAILSE 462 (724)
Q Consensus 395 r~kl~rvl~t~-~~rl~~---aktdmEDLiaRLnqe~av-k~fL~tKvkDlE~eLe~t~~~~ke~l-------qQa~l~E 462 (724)
+.+|+|||++= +.|=.. -...+|||-++||-.+.. ..-.---+++...++++.+ +....| -+.|.+=
T Consensus 285 q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~Lq-Eksqile~sv~~l~~~lkDL 363 (531)
T PF15450_consen 285 QKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQ-EKSQILEDSVAELMRQLKDL 363 (531)
T ss_pred HHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45677776652 222222 234678888887754322 1111112233333444433 222222 2223332
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccc-hhhhhHH-HHhHHHHHHHHHHHHHHHHHHHHH----------
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAES-MEESTVK-DKNVLQELDATKEQLENLSKRYEE---------- 530 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~-~~~s~~~-e~~~~qel~~~~~~~e~l~k~~~e---------- 530 (724)
=.+|--++|-++- +-+.++.+|-+..++-...+- ..+++.. .+++...++.+++.++.|-++.++
T Consensus 364 d~~~~aLs~rld~---qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks 440 (531)
T PF15450_consen 364 DDHILALSWRLDL---QEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS 440 (531)
T ss_pred HHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3578888998642 222233333332221111100 0111111 112444566667777777665554
Q ss_pred -HhhhcccchhHHHHHHHHHhhhhHH
Q 004913 531 -LEAKSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 531 -lEakskad~KvLvKEVKsLR~s~~~ 555 (724)
++.+.-++-|..-.||+.+|.-...
T Consensus 441 d~d~kIdtE~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 441 DSDTKIDTEGKAREREVGAVRQELAT 466 (531)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888899988865544
No 371
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.41 E-value=4.7e+02 Score=29.07 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=99.2
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhcccc-CCCC
Q 004913 417 EDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ-DGNP 495 (724)
Q Consensus 417 EDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~-~~~~ 495 (724)
..|++.++--.+-|+=|..||+++=....-.+.+-.+.+++..=. |+.-..+-=.+.+|++.+-+.=.+..-+- .+..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~el-K~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~ 108 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL-KEKRDEINAKLQELRKEYRELKEKRNEFNLGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 667777777788899999999999888888888888888777655 55555554556666666655544444331 1111
Q ss_pred cccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 496 HAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 496 ~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
. ..+...+++.+-.|+. ..-+.+.=+-||++++-||......++-+.+..+-+.-...+
T Consensus 109 ~--~~ler~i~~Le~~~~T-----------------~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei-- 167 (294)
T COG1340 109 I--KSLEREIERLEKKQQT-----------------SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEI-- 167 (294)
T ss_pred H--HHHHHHHHHHHHHHHh-----------------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1 1111111111111111 122344456688888888888777666555544433222222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 576 QERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 576 ~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
. .-+..++.+-.++.-|.+..|+|.-.+
T Consensus 168 --~----~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 168 --D----ELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred --H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233556777888889999999997655
No 372
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=44.77 E-value=5.8e+02 Score=29.93 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHH
Q 004913 407 RRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWK 486 (724)
Q Consensus 407 ~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~ 486 (724)
+++..++...+.+..+-..-..-.+||.-++++||.. +-+..-...+-.|+.++.. .+.++..+...-..
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~------~l~~~E~e~L~~e~~~L~n----~e~i~~~~~~~~~~ 237 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA------DLQPGEDEALEAEQQRLSN----LEKLRELSQNALAA 237 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC------CcCCCcHHHHHHHHHHHhC----HHHHHHHHHHHHHH
Confidence 3344444444444444333444445555555444431 0011112223445555554 44555555555444
Q ss_pred h
Q 004913 487 L 487 (724)
Q Consensus 487 l 487 (724)
|
T Consensus 238 L 238 (563)
T TIGR00634 238 L 238 (563)
T ss_pred H
Confidence 5
No 373
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=44.62 E-value=6.7e+02 Score=30.59 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=36.4
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhh
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD 439 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkD 439 (724)
|--+-||.+|+.=...+++..++++.+++-..+| +||.-++-|
T Consensus 249 ~pP~~vL~AL~~la~~~~~~i~~~~~~id~~~D~-e~lr~~l~d 291 (632)
T PF14817_consen 249 HPPNHVLQALEHLASRRKAEIRSETESIDVRADA-EYLRNQLED 291 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH-HHhhhccCC
Confidence 4456799999999999999999999999988888 788765555
No 374
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.53 E-value=3.4e+02 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhccccc
Q 004913 594 ECRILLNRFQACNANLY 610 (724)
Q Consensus 594 ec~iL~~rLqEC~~~~~ 610 (724)
|...+..++++|+..+-
T Consensus 121 e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 121 EQAKQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555666665553
No 375
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.09 E-value=6e+02 Score=29.91 Aligned_cols=271 Identities=17% Similarity=0.179 Sum_probs=131.7
Q ss_pred CceEEecccchhhHhHHHHHHHHHHhhhhc---chHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH
Q 004913 385 DAELVIPLDQRHKLSRVLLTMERRLVTAKT---DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILS 461 (724)
Q Consensus 385 d~~~vlp~d~r~kl~rvl~t~~~rl~~akt---dmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ 461 (724)
|..+=+-...|+-+.+=+.-+|++....-- --+|+-.||-||.++ |.+.+--||.-+. +.--.-.+++..
T Consensus 207 dl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlq---LvhR~h~LEEq~r----eqElraeE~l~E 279 (502)
T KOG0982|consen 207 DLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQ---LVHRYHMLEEQRR----EQELRAEESLSE 279 (502)
T ss_pred hhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHH---HHHHHHHHHHHHH----hhhhhHHHHHHH
Confidence 444445567899999999999998755433 357889999999987 6676666665432 222222333332
Q ss_pred ----------hhHhhhhhhhcHHHHHHHHHHHHH-HhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHH
Q 004913 462 ----------ERERLTQMQWDMEELRQKSLEMEW-KLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYE 529 (724)
Q Consensus 462 ----------ErEr~t~mqwdmeelr~k~~e~E~-~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~ 529 (724)
=.||--.++-+....|-+..+-|- .|.++ -++..+--...-++.+ +.++|++++.|+-..|+.|.
T Consensus 280 e~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~---~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~ 356 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSL---IARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333222221 11111 1111122233445555 77778888888877777766
Q ss_pred HHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhhhccc
Q 004913 530 ELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREK-LLHECRILLNRFQACNAN 608 (724)
Q Consensus 530 elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~k-llhec~iL~~rLqEC~~~ 608 (724)
..=-+-+- ..+|=++---=..+|.+||.++-..|..+++.. .=.. .||.. +=||++ ||+-=|.+
T Consensus 357 rm~d~Lrr----fq~ekeatqELieelrkelehlr~~kl~~a~p~------rgrs-SaRe~eleqevk----rLrq~nr~ 421 (502)
T KOG0982|consen 357 RMNDILRR----FQEEKEATQELIEELRKELEHLRRRKLVLANPV------RGRS-SAREIELEQEVK----RLRQPNRI 421 (502)
T ss_pred HHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccc------cCch-hHHHHHHHHHHH----Hhccccch
Confidence 54322211 112222221122233333333333333333111 0000 13322 223443 45555555
Q ss_pred ccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhhhhhhhhhcccCCCCCccchHHHHHHHHHHHHhhH
Q 004913 609 LYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKAAASADVEKAHDNDVCTRTDNELREVIADILVDNA 688 (724)
Q Consensus 609 ~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~~~~~~~~~~~~~~~~~~~d~elrk~lad~~idna 688 (724)
+. +-++.+ +..+++--+..|++- -.+-+=++-||.+.+. -+-|+|-++|-.----|.
T Consensus 422 l~-eqneel--ngtilTls~q~lkn~----ha~~~~~~Slaaeid~----------------~sqdeLmqafqeqeeiNf 478 (502)
T KOG0982|consen 422 LS-EQNEEL--NGTILTLSTQFLKNW----HATFSLFFSLAAEIDE----------------MSQDELMQAFQEQEEINF 478 (502)
T ss_pred hh-hhhhhh--hhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHhhh
Confidence 43 222222 222222223333221 1112233344444322 256788899888888899
Q ss_pred HHHHHHHHHHHHHhh
Q 004913 689 KLRKQVNSVLRRALL 703 (724)
Q Consensus 689 ~LRkq~Nsv~r~al~ 703 (724)
+|+--|--+|-+.+-
T Consensus 479 RL~~yid~iilniie 493 (502)
T KOG0982|consen 479 RLKFYIDFIILNIIE 493 (502)
T ss_pred HHHHHHhHHHHHHHh
Confidence 999888888776654
No 376
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.05 E-value=2.3e+02 Score=25.11 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLN-EKSKTEELLQQERQTHNHMKTVR 588 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~-eK~e~E~~l~~Er~~~e~~~~ar 588 (724)
+......+...+..+......++.+...-+.-+..++..|+.-..+-+++|-.-+. +..+....|....+..+. ..
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~---~l 88 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ---KQ 88 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 44555555666666666666677777777777777777777776666665543332 333444455555544433 34
Q ss_pred HHHHHHHHHHHHHHhhhc-cccc
Q 004913 589 EKLLHECRILLNRFQACN-ANLY 610 (724)
Q Consensus 589 ~kllhec~iL~~rLqEC~-~~~~ 610 (724)
.++-+=|.-....|++|+ +.|+
T Consensus 89 ~~l~~~~~~~e~~l~~~~~~e~L 111 (127)
T smart00502 89 EKLSHAINFTEEALNSGDPTELL 111 (127)
T ss_pred HHHHHHHHHHHHHHHcCCChHHH
Confidence 455555556666666543 3444
No 377
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=43.86 E-value=2.8e+02 Score=28.08 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=47.0
Q ss_pred HhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 004913 486 KLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL 549 (724)
Q Consensus 486 ~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL 549 (724)
++.+.+++|..+-.-.+++..|.+ +.+||..++.++...-++-+.+|.+.|.-++-|+.==|..
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555677888888 8899999999999888888888888887777776444444
No 378
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.71 E-value=50 Score=32.40 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhcc
Q 004913 474 EELRQKSLEMEWKLKS 489 (724)
Q Consensus 474 eelr~k~~e~E~~lks 489 (724)
.+|+..+..++..|++
T Consensus 89 ~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 89 AELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 379
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.57 E-value=5.6e+02 Score=29.46 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=51.5
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhh-------
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQM------- 469 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~m------- 469 (724)
++..=|..++........++|+|=..+-++. ..+-||.-.||.|...|
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~-------------------------~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREY-------------------------QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333355555556666666666655544443 23334444555555443
Q ss_pred ----hhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 004913 470 ----QWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 470 ----qwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elE 532 (724)
|=+|..|++.+..||+++.=- .-+...++.+-+|+.+-+...+|
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~~Yq-------------------s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKMAYQ-------------------SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-------------------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555666666666554211 44466677777788887777777
No 380
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=43.49 E-value=4.1e+02 Score=27.79 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHhhhhcchHHH-HHHhhhhhhHHHHHHhhhhhhHHHHHH
Q 004913 406 ERRLVTAKTDMEDL-ITRLNQEMTVKDYLMTKVKDLEVELET 446 (724)
Q Consensus 406 ~~rl~~aktdmEDL-iaRLnqe~avk~fL~tKvkDlE~eLe~ 446 (724)
..|+..-..+||+= -.|-..|..--.-|...+..||..|++
T Consensus 11 ~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~ 52 (247)
T PF06705_consen 11 NERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEA 52 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455433 244444444444444444455544443
No 381
>COG5283 Phage-related tail protein [Function unknown]
Probab=43.39 E-value=3.5e+02 Score=35.12 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=80.9
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh----------h
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEA----------K 534 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa----------k 534 (724)
+-.++-+|-|+-+.+++.+..+|..-+.-+++|-...++.++.. .-.++..-++.++.++.+...+.. +
T Consensus 73 ~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eq 152 (1213)
T COG5283 73 YEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQ 152 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33456688899999999999999998888888888888888777 444444444444444444433333 3
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 535 SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN 608 (724)
Q Consensus 535 skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~ 608 (724)
.+-+.--.-++|..||.|-.---..++..+++=.-++..|- +....++.++..--..+..||++.-..
T Consensus 153 t~n~~g~a~~~~~gl~esf~~q~~aln~q~~~t~k~~~~~~------~~l~e~qq~~~q~~~a~~~~L~~s~~q 220 (1213)
T COG5283 153 TGNKFGTADAKVVGLRESFGRQTEALNKQLERTKKVADALT------YVLDEAQQKLSQALSARLERLQESRTQ 220 (1213)
T ss_pred hhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHhhhhhhhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556678888997555445555555544433332222 233333444444333333555554433
No 382
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=42.78 E-value=3.2e+02 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=21.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhhHH
Q 004913 427 MTVKDYLMTKVKDLEVELETTKQKSKE 453 (724)
Q Consensus 427 ~avk~fL~tKvkDlE~eLe~t~~~~ke 453 (724)
+.+=++|...+|.+|.|+.+.++....
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~ 41 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELAR 41 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888899999999988877654
No 383
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=42.45 E-value=2.6e+02 Score=35.75 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 004913 567 KSKTEELLQQERQTHNHM 584 (724)
Q Consensus 567 K~e~E~~l~~Er~~~e~~ 584 (724)
+.|.|++-..|+++.|.+
T Consensus 506 r~e~er~~r~e~e~~e~~ 523 (1021)
T PTZ00266 506 RLERERVDRLERDRLEKA 523 (1021)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 384
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.44 E-value=9.6e+02 Score=31.81 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hcccchhHHHHH-HHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEA--KSKADIKVLVKE-VKFLRSSQIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEa--kskad~KvLvKE-VKsLR~s~~~lk~el~~~~~eK~e~E~ 572 (724)
++++-..+++.++.|++.|+.++. ..|++.-+-++| .+.||..-..|-.+-...|+.-.+||.
T Consensus 1652 a~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1652 AKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666655543 233333333333 455666655565555566666666664
No 385
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=42.29 E-value=5.6e+02 Score=29.06 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=12.0
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENL 524 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l 524 (724)
..+.++.. +..++..++.++..+
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 555555555555554
No 386
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=42.25 E-value=2.4e+02 Score=28.83 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=43.3
Q ss_pred chhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccc------------hhHHH--HHHHHHhhhhHHHHHHHH
Q 004913 499 SMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKAD------------IKVLV--KEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 499 ~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad------------~KvLv--KEVKsLR~s~~~lk~el~ 561 (724)
..++.+...|+ |..+|..+..+++.+..+...=|+.-+.+ .++|. +||-.||++-.+||..-.
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~Te 165 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATE 165 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777 77788887777777776666555544433 34555 999999999888876544
No 387
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.21 E-value=4.4e+02 Score=27.82 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH--------------hhhccc
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL--------------EAKSKA 537 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el--------------Eakska 537 (724)
|+.....+.+....+.+++-+--.-+...+....|.+ +.+.+..+..++..|......+ +|+..-
T Consensus 47 l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~ 126 (202)
T PF06818_consen 47 LRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQR 126 (202)
T ss_pred HHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhh
Q ss_pred c-----hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 538 D-----IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQT----HNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 538 d-----~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~----~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+ ..-|..||=.||+.....++...+....=..=-++-++||++ +..-+..=..+++-++.|-.+|++
T Consensus 127 ~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~q 202 (202)
T PF06818_consen 127 QAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELRQ 202 (202)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 388
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=42.18 E-value=5.6e+02 Score=29.03 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=10.6
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 004913 546 VKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~ 564 (724)
|-.||.++..+++++....
T Consensus 287 i~~Lr~~~~~~~~~~~~l~ 305 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLS 305 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666655544443
No 389
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.83 E-value=1.8e+02 Score=26.28 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhh---hHHHHHHHHHHHHhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS---QIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s---~~~lk~el~~~~~eK~e~E~ 572 (724)
.+.++..+-++.-.++.+.+++ +++++.+.|+|+.+..+ -.+|++|....-.+..++|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~l----r~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEEL----RAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554 34466666666666654 34444444444444444443
No 390
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=41.69 E-value=64 Score=35.12 Aligned_cols=58 Identities=28% Similarity=0.497 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhh
Q 004913 583 HMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKA 654 (724)
Q Consensus 583 ~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~ 654 (724)
....|...|+.||+-+-..+.+|--.+..-+.+ -|+.||.++.||+..++.|..+.+.
T Consensus 13 ~~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e--------------~l~~s~~ql~ll~~~~k~L~aE~~q 70 (268)
T PF11802_consen 13 DVTDAKEELIKECEELWKDMEECQNKLSLIGTE--------------TLTDSDAQLSLLMMRVKCLTAELEQ 70 (268)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------CCCCcchhHHHHHHHHHHHHHHHHH
Confidence 455788899999999999999998877532222 2347889999999999999777755
No 391
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.51 E-value=4.4e+02 Score=27.58 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=28.2
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
.....|++ +++++...+.++++|+...+. |.+.|.+++....+|++++.+.-..+.++.-++
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~-----------l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQ-----------LERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 555555555555554443333 333444444444444444444444444444433
No 392
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.41 E-value=2.5e+02 Score=28.97 Aligned_cols=90 Identities=17% Similarity=0.320 Sum_probs=54.5
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhh---HHHHHHHHHHhhHhhhhhhh
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKS---KETLQQAILSERERLTQMQW 471 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~---ke~lqQa~l~ErEr~t~mqw 471 (724)
|+.||. |..++.+....+-++..+=.++.+..+-++=+-.+.++||..+-..++.. ++..+-+- .-|..|+=
T Consensus 92 ~~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~----~ei~~lks 166 (190)
T PF05266_consen 92 RSRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD----KEISRLKS 166 (190)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 677888 55566667777778888888888887777777777777777666555432 11111111 22444555
Q ss_pred cHHHHHHHHHHHHHHhcc
Q 004913 472 DMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks 489 (724)
+++.+-+.+..+|...++
T Consensus 167 ~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 167 EAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 393
>smart00150 SPEC Spectrin repeats.
Probab=41.21 E-value=2.1e+02 Score=23.81 Aligned_cols=66 Identities=26% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIK 540 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~K 540 (724)
++++-.=+.++|..+.+..- +......+....+++ +..++...+..++.+.+....|-...-.+..
T Consensus 7 ~~~l~~Wl~~~e~~l~~~~~--~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~ 73 (101)
T smart00150 7 ADELEAWLSEKEALLASEDL--GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAE 73 (101)
T ss_pred HHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHH
Confidence 34444455556655554322 222333455555666 7788888888888888777777665444433
No 394
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=41.16 E-value=44 Score=30.19 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=37.2
Q ss_pred HHHHHhhhhcchHHHHHHhhhhh--hHHHHHHhhhhhhHHHHHHHHH
Q 004913 405 MERRLVTAKTDMEDLITRLNQEM--TVKDYLMTKVKDLEVELETTKQ 449 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaRLnqe~--avk~fL~tKvkDlE~eLe~t~~ 449 (724)
|...+...+.|.+.|-+=|.+.. -||++|+...+.||.||...++
T Consensus 1 ~~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 1 MSEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999887777654 6999999999999999998776
No 395
>PRK00106 hypothetical protein; Provisional
Probab=41.08 E-value=7e+02 Score=29.81 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=8.8
Q ss_pred HHHHHHhhhccccccc
Q 004913 597 ILLNRFQACNANLYAE 612 (724)
Q Consensus 597 iL~~rLqEC~~~~~~e 612 (724)
|+-.=.|-|..++..|
T Consensus 208 ii~~aiqr~a~~~~~e 223 (535)
T PRK00106 208 LLAQAMQRLAGEYVTE 223 (535)
T ss_pred HHHHHHHHhcchhhhh
Confidence 3444566676665543
No 396
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.82 E-value=6.6e+02 Score=29.47 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhh---hhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 539 IKVLVKEVKFLRS---SQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 539 ~KvLvKEVKsLR~---s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
++-+.+|+..|-. ...+|++++.++.++-.++...|++.|
T Consensus 331 ~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 331 AEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 344566666666666666666666555
No 397
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.47 E-value=1.3e+02 Score=35.11 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNE-KSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~e-K~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
|-|-|.+|-+.||..+..+.+...+++.- ..++. +|+ +..+..+.++...+.-|..||..
T Consensus 81 ~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~----~~~---~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 81 ENEALKAENERLQKREQSIDQQIQQAVQSETQELT----KEI---EQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556777777777777777777777643 22222 222 22334455666667777888853
No 398
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=40.38 E-value=4.3e+02 Score=27.87 Aligned_cols=97 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhh----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQ----IGLKQELSQMLNEKSKTEELLQQERQTHNHMK 585 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~----~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~ 585 (724)
++.+++..=.+.+.+.+. +..+-=..++.|.++.+.+|.++ ..|.+|+.....+-.-..+--.+.-+..|.|+
T Consensus 70 iL~ete~~A~~~~~~ae~---l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar 146 (237)
T cd07657 70 IMDSTDQLSKLIKQHAEA---LESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAK 146 (237)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-------HHHHHHHHHhhhcccc
Q 004913 586 TVREKLLH-------ECRILLNRFQACNANL 609 (724)
Q Consensus 586 ~ar~kllh-------ec~iL~~rLqEC~~~~ 609 (724)
.--.+... ++.-.+++++++....
T Consensus 147 ~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~ 177 (237)
T cd07657 147 SKFEEAVVKGGRGGRKLDKARDKYQKACRKL 177 (237)
T ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHH
No 399
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=40.31 E-value=80 Score=30.77 Aligned_cols=57 Identities=18% Similarity=0.478 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN 608 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~ 608 (724)
..|||-.|+..+.+++..+.+.+..+..++ +..++...+=+|++-| +.+++..|-.+
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~~-------~~~e~lEsiAAKIIkD---isdkIdkCeC~ 60 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQSTE-------QDQENLESIAAKIIKD---ISDKIDKCECN 60 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------HHHHHHHHHHHHHHH---HHHHHHT-TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------chHHHHHHHHHHHHHH---HHHHHHhchhh
Confidence 358888899888888888887765544333 2455667777888888 67777777433
No 400
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.21 E-value=1.4e+02 Score=26.94 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=23.2
Q ss_pred HhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 449 QKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 449 ~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
.|-.+..||||-+ ||-+|-++|||..|-..
T Consensus 7 ekLE~KiqqAvdT----I~LLQmEieELKEknn~ 36 (79)
T COG3074 7 EKLEAKVQQAIDT----ITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhhH
Confidence 4455678999966 99999999999876543
No 401
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.11 E-value=1.3e+02 Score=29.94 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=27.1
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~ 509 (724)
..+=++++||++.......|+.+.....--+.....+..|..
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~ 99 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEME 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344578899999999999999985444433333333333333
No 402
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.09 E-value=3.8e+02 Score=31.28 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 004913 637 QISLLITEA 645 (724)
Q Consensus 637 rI~lLlaEa 645 (724)
||..-||+|
T Consensus 124 r~~e~la~~ 132 (459)
T KOG0288|consen 124 RIAERLAEA 132 (459)
T ss_pred HHHHHHHHH
Confidence 444444443
No 403
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.08 E-value=3.3e+02 Score=25.90 Aligned_cols=50 Identities=28% Similarity=0.340 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE 566 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e 566 (724)
+.+..+.++ ++|.++.+-++ +++|.|.|..+.|+.+..++++.|.+++..
T Consensus 65 v~qd~~e~~---~~l~~r~E~ie----~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 65 VKVDKTKVE---KELKERKELLE----LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred hhccHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444 34455556555 678888888888888888888888877654
No 404
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.96 E-value=1.8e+02 Score=33.02 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004913 510 VLQELDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEa 533 (724)
+.+++..++++++.++++.++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~ 355 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKK 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 405
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.84 E-value=1.4e+02 Score=29.97 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.8
Q ss_pred ccchhhH
Q 004913 392 LDQRHKL 398 (724)
Q Consensus 392 ~d~r~kl 398 (724)
.-.|+++
T Consensus 28 ~~~R~~i 34 (192)
T PF05529_consen 28 SPIRRKI 34 (192)
T ss_pred cHHHHHH
Confidence 3344333
No 406
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.71 E-value=2.6e+02 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHM 584 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~ 584 (724)
++|..++.......+++.+++.+..-++++..+.++.....
T Consensus 66 ~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~ 106 (123)
T PF02050_consen 66 QELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQE 106 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566677777777777776665444433
No 407
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=39.59 E-value=53 Score=28.60 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 553 QIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 553 ~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
+.-|+++|++.+..|.+++--.++..... --.|=-.|+.-+..||+++-.+||
T Consensus 3 ~~~L~~QLd~I~~~K~~l~ik~~H~Ekl~-----kitK~p~El~~i~~kl~~~R~~FL 55 (62)
T PF06034_consen 3 NRSLTQQLDEINQMKRQLTIKSQHWEKLK-----KITKNPKELQEIEKKLQELRQNFL 55 (62)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999998888844221 223445788999999999999998
No 408
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.49 E-value=3.2e+02 Score=30.53 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=39.0
Q ss_pred cchhhHhHHHHHHHHHHhhhhc------chHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH
Q 004913 393 DQRHKLSRVLLTMERRLVTAKT------DMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL 455 (724)
Q Consensus 393 d~r~kl~rvl~t~~~rl~~akt------dmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l 455 (724)
|-|.++..|++.-+.-+.+.+. +.||+|--|--.+.|.. .-.||+..|.+=...-.+++...
T Consensus 73 ~iRkrv~~i~Nk~e~dF~~l~~yNdYLE~vEdii~nL~~~~d~~~-te~~l~~y~~~n~~~I~~n~~~~ 140 (309)
T TIGR00570 73 DIRKRVLKIYNKREEDFPSLREYNDYLEEVEDIVYNLTNNIDLEN-TKKKIETYQKENKDVIQKNKEKS 140 (309)
T ss_pred HHHHHHHHHHccchhccCCHHHHHHHHHHHHHHHHHhhcCCcHHH-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577777777766666665542 68999999988888865 44455555544444444443333
No 409
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=39.34 E-value=4.7e+02 Score=27.35 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc--------------cc
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK--------------AD 538 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk--------------ad 538 (724)
..+|.++..|+..|+.- ..=.. +...++.....++-|..-.+++++..- .+
T Consensus 80 ~~l~~~l~~~~~~L~~A--------------~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~ 145 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQA--------------SESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQ 145 (296)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHH
Confidence 46777777777666432 22222 667777788888888777777654322 23
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
.+-|+.+|+.|+.+...+-.+|...+ ....+.++|.
T Consensus 146 L~~ll~~l~~l~~eR~~~~~~lk~~~-~~d~i~~~l~ 181 (296)
T PF13949_consen 146 LRELLNKLEELKKEREELLEQLKEKL-QNDDISKLLS 181 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHH
Confidence 46677778888777777777777655 3555555555
No 410
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.32 E-value=1e+02 Score=25.95 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~ 563 (724)
|-+++..|+..+.+|++|++.+
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 411
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=38.74 E-value=3.8e+02 Score=27.30 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=58.3
Q ss_pred ccCCceEEecccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhh-----hHHHHHHhhhhhhHHHHHHHHHhhHHHHH
Q 004913 382 FSGDAELVIPLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEM-----TVKDYLMTKVKDLEVELETTKQKSKETLQ 456 (724)
Q Consensus 382 ~~~d~~~vlp~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~-----avk~fL~tKvkDlE~eLe~t~~~~ke~lq 456 (724)
+.++..|++..+.-.-+.+++..+. +......+.++++..+=.++ .+-+.+..++..+|..+ .....++.++
T Consensus 75 ~~~~~lit~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~--~~~~~~~~~~ 151 (292)
T PF01544_consen 75 LGDNFLITVHRDPLPFIDELRERLE-SRNERPSSPEDLLYAILDEIVDDYFEVLEELEDELDELEDEL--DDRPSNELLR 151 (292)
T ss_dssp EETTEEEEEESSSSHCHHHHHHHHH-STTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THTTTHHHCC
T ss_pred EecceEEEEECCCChHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchhhHH
Confidence 3456677777776555666666655 44466678888887764433 34445667777777777 4445555666
Q ss_pred HHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 457 QAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 457 Qa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
+-.-. |..+.. +|+-+.....-++
T Consensus 152 ~l~~l-~~~l~~-------l~~~l~~~~~~l~ 175 (292)
T PF01544_consen 152 ELFDL-RRELSR-------LRRSLSPLREVLQ 175 (292)
T ss_dssp HHHHH-HHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHH-------HHHHhhhHHHHHH
Confidence 55555 444555 5555555555553
No 412
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=38.61 E-value=6e+02 Score=29.50 Aligned_cols=59 Identities=25% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 476 LRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
|+.+.+++|-..++. .++.+|.+ -.--+.++.+-+.....+....|-=+||.+.+..+|
T Consensus 148 lq~~~~~~er~~~~y-----------~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~e 207 (464)
T KOG4637|consen 148 LQEKSLEYERLYEEY-----------TRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRRE 207 (464)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 777777887777766 55556555 222345555555555666666666666666666555
No 413
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.27 E-value=2.2e+02 Score=30.72 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 511 LQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
.+-.+..+++.| |-++..+.-+...+++|-+--|.-.||...+-+|.|++.+
T Consensus 68 ~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 68 RETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333444455555 6677777888888888888888888888888888887744
No 414
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.22 E-value=1.7e+02 Score=32.69 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGL 556 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~l 556 (724)
.++|.+..+++++.|++.+...-.|....-|..-+-.+++..+-..|
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888887777777777777777777777776665555
No 415
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=37.79 E-value=1.7e+02 Score=33.18 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhc--------ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004913 521 LENLSKRYEELEAKS--------KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE 577 (724)
Q Consensus 521 ~e~l~k~~~elEaks--------kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~E 577 (724)
++.+.+++.++|.+. .+..+-|.||...|+.....+++ +.+...+..++..++..|
T Consensus 25 l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~-l~~~~~e~~~~~ell~~e 88 (367)
T PRK00578 25 VDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEE-LRQRLDDLEELLELAEEE 88 (367)
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 445555666666433 22344566777777766655554 556667777777777543
No 416
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.75 E-value=3.1e+02 Score=30.36 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=12.6
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 004913 682 DILVDNAKLRKQVNSVLRR 700 (724)
Q Consensus 682 d~~idna~LRkq~Nsv~r~ 700 (724)
-+=.-|--||-.||-+-.+
T Consensus 282 QLK~qNQEL~ski~ELE~r 300 (307)
T PF10481_consen 282 QLKAQNQELRSKINELELR 300 (307)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3445677888888876543
No 417
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.42 E-value=9.1e+02 Score=30.08 Aligned_cols=47 Identities=26% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 516 ATKEQLENLSKRYEELEAK-SKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 516 ~~~~~~e~l~k~~~elEak-skad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
...++-++|++-..+-||- -++++--|-.|++..|+.++-..-+|.+
T Consensus 609 ~l~~qKe~Lq~~qaeeEa~ll~~qrqy~ele~r~ykRk~l~~rH~leq 656 (948)
T KOG0577|consen 609 WLLRQKENLQQCQAEEEAGLLRRQRQYLELECRRYKRKMLLARHELEQ 656 (948)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4455566666665555554 2456666777777777776644444443
No 418
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=37.30 E-value=16 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccC
Q 004913 587 VREKLLHECRILLNRFQACNANLYAEEED 615 (724)
Q Consensus 587 ar~kllhec~iL~~rLqEC~~~~~~ee~~ 615 (724)
+-.-++-.|.-+|.||.||+..++.|..+
T Consensus 6 sld~lv~~cg~IrarleE~qa~i~~e~~~ 34 (51)
T PF07197_consen 6 SLDLLVVDCGSIRARLEEIQAQIPDELAK 34 (51)
T ss_pred hHHHHHhccchHHHHHHHHHHHhhHHHHH
Confidence 34457789999999999999998866544
No 419
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=37.26 E-value=6.5e+02 Score=30.55 Aligned_cols=36 Identities=8% Similarity=0.183 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccccCce
Q 004913 582 NHMKTVREKLLHECRILLNRFQACNANLYAEEEDNV 617 (724)
Q Consensus 582 e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~ 617 (724)
|.-...+.+++.++.-|-.+|+|---.|.-+.+|..
T Consensus 461 e~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~ 496 (645)
T KOG0681|consen 461 EDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTT 496 (645)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhhCccccccccccc
Confidence 445567888999999999999999888875555543
No 420
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.22 E-value=2.4e+02 Score=32.87 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 523 NLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 523 ~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
.|++.-+-+-++---..-|=--||-+|+++-.+|.+=+.++-+ -|+.+.+..++. -++|.-|+--|+.+|
T Consensus 381 rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~-------~~~~~l~a~ehv---~e~l~~ei~~L~eql 450 (542)
T KOG0993|consen 381 RLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRT-------SLQQELDASEHV---QEDLVKEIQSLQEQL 450 (542)
T ss_pred HHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHH-------HHHHHHhHHHHH---HHHHHHHHHHHHHHH
Confidence 3444444443333333333344666666666665554444332 244555544443 467888888888888
Q ss_pred hhhc
Q 004913 603 QACN 606 (724)
Q Consensus 603 qEC~ 606 (724)
++-.
T Consensus 451 e~e~ 454 (542)
T KOG0993|consen 451 EKER 454 (542)
T ss_pred HHHH
Confidence 7643
No 421
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=37.05 E-value=4.8e+02 Score=32.82 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=10.2
Q ss_pred chh-HHHHHHHHHHHCC
Q 004913 92 FNN-FLKLFTDLKKAFP 107 (724)
Q Consensus 92 YSD-F~~Lh~~Lkk~fP 107 (724)
||. |+||...+.+.+|
T Consensus 429 YSkLFD~lV~~iNqsiP 445 (1259)
T KOG0163|consen 429 YSKLFDWLVGRINQSIP 445 (1259)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 444 7777777666655
No 422
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=36.98 E-value=4.8e+02 Score=28.16 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhccccc
Q 004913 594 ECRILLNRFQACNANLY 610 (724)
Q Consensus 594 ec~iL~~rLqEC~~~~~ 610 (724)
+....+.+|..|.+.=+
T Consensus 198 ~l~~a~~~l~~~~I~AP 214 (346)
T PRK10476 198 ALAIAELHLEDTTVRAP 214 (346)
T ss_pred HHHHHHHHhhcCEEECC
Confidence 33445567777776544
No 423
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=36.93 E-value=8.7e+02 Score=30.47 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh---hhcccchhHHHHHHHHHhh
Q 004913 480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE---AKSKADIKVLVKEVKFLRS 551 (724)
Q Consensus 480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE---akskad~KvLvKEVKsLR~ 551 (724)
-+-.||+..+.+.....++...+-..+|.. .+|+....-++++.+.|++++.+ -+-+.++.-|--||+-||+
T Consensus 183 rqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 183 RQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444555555555555 66666666666666666666543 2334455555555666654
No 424
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.76 E-value=3.2e+02 Score=29.64 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004913 588 REKLLHECRILLNRFQAC 605 (724)
Q Consensus 588 r~kllhec~iL~~rLqEC 605 (724)
++++.-|+.-|+.|+-|.
T Consensus 186 ~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 186 LKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHhchhHHHHHHHHHHHh
Confidence 345555566666665543
No 425
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=36.53 E-value=56 Score=29.02 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=17.5
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
++|.+ ..+-|..+|+.++.|..+..+||+|
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555 4555556666666666666666654
No 426
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.34 E-value=4.7e+02 Score=28.61 Aligned_cols=115 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCccc
Q 004913 419 LITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAE 498 (724)
Q Consensus 419 LiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e 498 (724)
|..-|.+|+..|+=.+.-+. -..-...-...++.||-.=++.+.+++=.|+.|......+|.|++-.
T Consensus 136 LydlL~kE~~lr~~R~~a~~-----r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekk-------- 202 (267)
T PF10234_consen 136 LYDLLGKEVELREERQRALA-----RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKK-------- 202 (267)
T ss_pred HHHHHhchHhHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHHHH-------HHHHHHhhhcccchhHHHHHHHHHhhhhHHHHH
Q 004913 499 SMEESTVKDKNVLQELDATKEQLENLS-------KRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQ 558 (724)
Q Consensus 499 ~~~~s~~~e~~~~qel~~~~~~~e~l~-------k~~~elEakskad~KvLvKEVKsLR~s~~~lk~ 558 (724)
.+||+..++.|+.|+ .+|+.+|+.-+..-..-+.=+++|.-=..+|.+
T Consensus 203 ------------k~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~ 257 (267)
T PF10234_consen 203 ------------KQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE 257 (267)
T ss_pred ------------HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 427
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.70 E-value=3.6e+02 Score=28.84 Aligned_cols=68 Identities=25% Similarity=0.357 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhh
Q 004913 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQ 468 (724)
Q Consensus 399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~ 468 (724)
.|+...|+++|...+...+.+..||....... ...++...+..|+..+++-+..+++.+-..+.++..
T Consensus 157 ~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~--p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~ 224 (319)
T PF02601_consen 157 QRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRL--PERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQN 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677777777776666665543211 344566666777776666666666666555555555
No 428
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.55 E-value=4.3e+02 Score=28.41 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKL 591 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kl 591 (724)
+++...+...+.+.++...++.+.+...+.+-.+.+++-.....|++.+........+-..-+.+.+.+.+.. .....+
T Consensus 204 k~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~-~l~e~~ 282 (297)
T PF02841_consen 204 KEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEE-LLKEGF 282 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHHHHhh
Q 004913 592 LHECRILLNRFQA 604 (724)
Q Consensus 592 lhec~iL~~rLqE 604 (724)
-++...|+..++.
T Consensus 283 ~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 283 QEEAEKLQKEIQD 295 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 429
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.39 E-value=1e+02 Score=33.44 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
+-+-+.-++++|+.+.++.++.+.+...+..-|-++++.|...+.++ .+.-++=..|.++|..=|.|=.-.....+
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~wGE~~Le 79 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNWGEMQLE 79 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 44456778889999999999999988888888999999888877222 23444445667777754444444555555
Q ss_pred HHHHHHHHHHH-------HH--------hhhcccccccccCceecccCChhhHHHhhcccch
Q 004913 590 KLLHECRILLN-------RF--------QACNANLYAEEEDNVILESSSAADALALLTSSDD 636 (724)
Q Consensus 590 kllhec~iL~~-------rL--------qEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDn 636 (724)
.+|..+-.-.. .+ =+|-+.++ .+..++||+-=|-+|..-+...++
T Consensus 80 ~iLe~~gl~~~~~y~~Q~~~~~~~~~~rpD~vI~LP--~~~~i~IDSK~pl~~y~~~~~a~~ 139 (304)
T PF02646_consen 80 RILEDSGLPEGCDYETQVSLDEDGNGLRPDFVIHLP--GGRHIPIDSKFPLEAYERYIEAED 139 (304)
T ss_pred HHHHHcCCCcccchhhcccccCCCCCcCceEEEEcC--CCCEEEEecCCCHHHHHHHHhCCC
Confidence 55555431111 00 12223333 445788888877677544443333
No 430
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=35.25 E-value=3e+02 Score=25.91 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH---
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFL--- 549 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsL--- 549 (724)
|+++-.++.+....|......-...+-....+....+ +...++++|+.+..+...+=-..+..+|-|.+.++.+
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~---~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~ 77 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD---ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEAL 77 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred ---------hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 550 ---------RSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 550 ---------R~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
++++..|.+.+..+|.+=..++.-..+.- +.++.|.
T Consensus 78 ~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~----k~~i~Rq 122 (151)
T cd00179 78 NGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERY----KERIQRQ 122 (151)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
No 431
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=35.24 E-value=9.3e+02 Score=29.59 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHh-hHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-----cCCCCcccchhhhhHHHHh
Q 004913 436 KVKDLEVELETTKQK-SKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-----QDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 436 KvkDlE~eLe~t~~~-~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-----~~~~~~~e~~~~s~~~e~~ 509 (724)
|...|..+|++.+.+ .+-+.+-.|+. ==||.=+=-++.+++|++=..- -.+.-..+-...+++.=-+
T Consensus 252 ta~kLs~qldnv~~ev~~~~se~~vv~-------ky~~~ve~ar~~F~~EL~si~p~l~~~d~~~~L~~~dln~liahah 324 (657)
T KOG1854|consen 252 TAHKLSNQLDNVKREVSSSNSEAEVVG-------KYSELVEKARHQFEQELESILPGLSLADKEENLSEDDLNKLIAHAH 324 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHhhhcccchhHHHHHHHH-----HhhhhHHHH
Q 004913 510 VLQELDATKEQLEN---------------------------LSKRYEELEAKSKADIKVLVKEVKF-----LRSSQIGLK 557 (724)
Q Consensus 510 ~~qel~~~~~~~e~---------------------------l~k~~~elEakskad~KvLvKEVKs-----LR~s~~~lk 557 (724)
+ .++..+++|++ |..+.+..+.+.-++.-.+..||++ ||++.....
T Consensus 325 ~--rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa 402 (657)
T KOG1854|consen 325 T--RVDQLQKELEDQKADEELHIKRAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQA 402 (657)
T ss_pred H--HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHH--------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 558 QELSQMLNEKSKT--------------EELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 558 ~el~~~~~eK~e~--------------E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+--.+.+++--.+ |++||+-.-...+.- |-|...+-+-+-||+
T Consensus 403 ~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg----~aL~rLrgie~aL~~ 459 (657)
T KOG1854|consen 403 KAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVG----KALSRLRGIEQALQE 459 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHH----HHHHHHHhHHHHHHH
No 432
>PRK10698 phage shock protein PspA; Provisional
Probab=34.92 E-value=5.5e+02 Score=26.85 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.1
Q ss_pred hhhHHHhhcccchhHHHHHHHHhhhh
Q 004913 624 AADALALLTSSDDQISLLITEAQLLA 649 (724)
Q Consensus 624 ~~da~dlL~tsDnrI~lLlaEaqll~ 649 (724)
.++|+..+..-.++|.-+-|+|+.+.
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~ 186 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHG 186 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhh
Confidence 35677777778899999999999873
No 433
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=34.67 E-value=5.8e+02 Score=27.04 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHhhhhcchHHHHHH-----hhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHH
Q 004913 405 MERRLVTAKTDMEDLITR-----LNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQK 479 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaR-----Lnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k 479 (724)
+++++..++.+++++=.+ .+..++.-.++.++...||..++...+.-.+.-++..=- |..++.+.=.+.+++++
T Consensus 57 ~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l-~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 57 LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKL-KKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 455555555555555322 233344445556666777776666555443333332222 45555554455555554
Q ss_pred HHHHHHH
Q 004913 480 SLEMEWK 486 (724)
Q Consensus 480 ~~e~E~~ 486 (724)
...+.-.
T Consensus 136 ~~~l~ar 142 (225)
T COG1842 136 KEALKAR 142 (225)
T ss_pred HHHHHHH
Confidence 4444333
No 434
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.48 E-value=1.5e+02 Score=26.18 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQE 559 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~e 559 (724)
|.++.+.|.....+++..
T Consensus 81 l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 435
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=34.47 E-value=5.6e+02 Score=28.61 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=74.9
Q ss_pred HHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH--HHHHhccccCCC-CcccchhhhhHHHHhHHHHHHHHHHHHHHH
Q 004913 448 KQKSKETLQQAILSERERLTQMQWDMEELRQKSLE--MEWKLKSKQDGN-PHAESMEESTVKDKNVLQELDATKEQLENL 524 (724)
Q Consensus 448 ~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e--~E~~lks~~~~~-~~~e~~~~s~~~e~~~~qel~~~~~~~e~l 524 (724)
++-+|..-||.++-||+-|.- |=|-+-+..++-+ ++=.|..|+-++ .+-+ ..|++|.+. ++.+|-+.-
T Consensus 186 k~~tR~~~q~k~~ke~~e~dk-qNd~~~f~~kY~~eVy~PAl~AC~k~~~~c~~---~pIr~kRd~-----vi~eqkr~~ 256 (308)
T PF06717_consen 186 KQLTRYEVQRKLLKERDEFDK-QNDPEKFEEKYYKEVYQPALAACQKQSEECYE---APIRAKRDA-----VINEQKRQY 256 (308)
T ss_pred CcccHHHHHHHHHHHHHHhhh-ccChHHHHHhcccccccHHHHHhccccccCcc---chhHHHHHh-----HHHHHHHHH
Confidence 566778888888888777665 3333333333322 233444454443 2222 347777772 234455555
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 525 SKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 525 ~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
--++.++--|.++|+++|-|=++-|-....+|-+++....-+-.++
T Consensus 257 ~~q~~~~~ekik~d~~~ldkg~~pL~~k~~el~~q~~~i~~~i~dl 302 (308)
T PF06717_consen 257 FLQSQEMSEKIKADMATLDKGQYPLNMKVSELNSQQSAISMKIRDL 302 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999988887665444443
No 436
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=34.15 E-value=4.6e+02 Score=33.51 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=55.5
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH------------HHhhhhHHHHHH-HHHHHHhHH
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK------------FLRSSQIGLKQE-LSQMLNEKS 568 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK------------sLR~s~~~lk~e-l~~~~~eK~ 568 (724)
.+.++.. ..++|+...+-|..|.+-.+- +-+++++.+|++ ..+++....+.+ -.|.-.++.
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~-----r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a 847 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK-----RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEA 847 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555 777777777777777655443 667777777765 445554444444 011112233
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 569 KTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 569 e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
-.++.+.++|++.|..+.-|.|+...-.-.+.|=++
T Consensus 848 ~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~ 883 (1018)
T KOG2002|consen 848 LIEKELEEARRKEEEEKARREKLEKQREEYRERTKE 883 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666776666666666555555544443
No 437
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.13 E-value=6.7e+02 Score=27.60 Aligned_cols=115 Identities=31% Similarity=0.348 Sum_probs=64.5
Q ss_pred HHHHhhhhhhHHHHHHHHHh-------hHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhh
Q 004913 431 DYLMTKVKDLEVELETTKQK-------SKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEES 503 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~~~-------~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s 503 (724)
--|+.+||-|.+|++.-..+ +.++|. .+. | ++|.+-+.++|+.|...|. ..++
T Consensus 55 ~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~--~lg-k----------eelqkl~~eLe~vLs~~q~-------Knek 114 (268)
T PF11802_consen 55 SLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLL--TLG-K----------EELQKLISELEMVLSTVQS-------KNEK 114 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHH--HHH-H----------HHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 37888999999999876544 344444 111 2 3455566667776655521 1122
Q ss_pred hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKV-LVKEVKFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~Kv-LvKEVKsLR~s~~~lk~el~~~~~ 565 (724)
+....+ -.+=|+.-++-+++|..++.|+..+.+.--+- .++|.|.=...-.+.+++|-..+-
T Consensus 115 Lke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 115 LKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233 22335666777889999999988877544332 235555444444444444444333
No 438
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.99 E-value=2.9e+02 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=14.3
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks 489 (724)
.+.++|=+++.|.++...+|..++.
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666555543
No 439
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=33.94 E-value=3.8e+02 Score=24.62 Aligned_cols=90 Identities=30% Similarity=0.350 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHH-HHHHhhhhhhHHHHHHHHHhhHH---HHHHHHHHhhHhhhhhhhcH
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVK-DYLMTKVKDLEVELETTKQKSKE---TLQQAILSERERLTQMQWDM 473 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk-~fL~tKvkDlE~eLe~t~~~~ke---~lqQa~l~ErEr~t~mqwdm 473 (724)
++.+-.-++.-+..+..|+. |+.++|...+.| .=+..++.+|++.++...++..+ .++|---+ -+.++.|-=-.
T Consensus 5 f~~~~~~v~~el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I-e~~V~~LE~~v 82 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQI-EEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44556667778888888886 999999998876 34677888888888888887643 44554444 34666666666
Q ss_pred HHHHHHHHHHHHHhcc
Q 004913 474 EELRQKSLEMEWKLKS 489 (724)
Q Consensus 474 eelr~k~~e~E~~lks 489 (724)
.+|+.=+.+.|.++|.
T Consensus 83 ~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 83 YELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6777777778877764
No 440
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.70 E-value=1.8e+02 Score=30.40 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=45.4
Q ss_pred hhcHHHHHHHHHHHHHHhccccCCCCcc--cchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 004913 470 QWDMEELRQKSLEMEWKLKSKQDGNPHA--ESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK 547 (724)
Q Consensus 470 qwdmeelr~k~~e~E~~lks~~~~~~~~--e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK 547 (724)
.|+.--|++++.++|.+|...+...... ...-..+.-..++.|=|+=.++||-.+.. --.+.-.+.+.+-..|+
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~----~~~~~~~~l~~v~~Dl~ 170 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE----GRSKSGKNLKSVREDLD 170 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCCCCHHHHHHHHH
Confidence 5877788899999888887663322210 00001111111122222223333322221 23455667788888888
Q ss_pred HHhhhhHHHHHHH
Q 004913 548 FLRSSQIGLKQEL 560 (724)
Q Consensus 548 sLR~s~~~lk~el 560 (724)
.++.|-..|+.=|
T Consensus 171 ~ie~QV~~Le~~L 183 (195)
T PF12761_consen 171 TIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665444
No 441
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.61 E-value=1.3e+02 Score=33.66 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 004913 590 KLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 590 kllhec~iL~~rLqEC~~~~~ 610 (724)
++.+-|.-|-||.+-||+-+.
T Consensus 176 ~l~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 176 KLEDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHHHhhccCCceeEE
Confidence 466788899999999999885
No 442
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.28 E-value=2.8e+02 Score=32.26 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=49.3
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 004913 535 SKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEE---LLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYA 611 (724)
Q Consensus 535 skad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~---~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ 611 (724)
+.|.-|-|.+-|.-+++-+-..-+|+..+-+.|.+.++ +|+.+++++.-+ ..-.+.+-....=--|.|+--=- +-
T Consensus 74 ~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~-e~la~~~~~l~~~~~r~~s~~ga-~~ 151 (459)
T KOG0288|consen 74 EEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIA-ERLAEALKDLGLKDLRRQSVDGA-VP 151 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH-HHHHHHhhhcchhhhhhhhhcCC-Cc
Confidence 44455666666777777777777777777777777654 455554333222 22223333222222333332211 12
Q ss_pred cccCceecccCChhhHHHhhc
Q 004913 612 EEEDNVILESSSAADALALLT 632 (724)
Q Consensus 612 ee~~~~~~~~ss~~da~dlL~ 632 (724)
+.+|.+.|..+-|+-|..-|.
T Consensus 152 ~~~~d~~v~~~lpS~~~~~ld 172 (459)
T KOG0288|consen 152 RTEDDHFVEDTLPSRALFVLD 172 (459)
T ss_pred cccCchhhhcccchhhhhhhh
Confidence 333345566666766665443
No 443
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=33.01 E-value=3.6e+02 Score=30.56 Aligned_cols=86 Identities=26% Similarity=0.314 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH-HHHhhhhHHHH
Q 004913 517 TKEQLENLSKRYEELEAKSK--------ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ-ERQTHNHMKTV 587 (724)
Q Consensus 517 ~~~~~e~l~k~~~elEaksk--------ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~-Er~~~e~~~~a 587 (724)
..+.++.+.+++.++|.+.. +..+-+.||...|+.-...+++ +.+...+-.++..+++. ..+..+.+...
T Consensus 5 ~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~-~~~~~~~~~~~~el~~~~D~e~~~~a~~e 83 (360)
T TIGR00019 5 LLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYRE-YQQAQEDIKEAKEILEESDPEMREMAKEE 83 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34555666666666665442 1234556777777776555443 66666777777777643 22233333333
Q ss_pred HHHHHHHHHHHHHHHh
Q 004913 588 REKLLHECRILLNRFQ 603 (724)
Q Consensus 588 r~kllhec~iL~~rLq 603 (724)
-..+..++.-|..+|+
T Consensus 84 ~~~l~~~~~~~e~~l~ 99 (360)
T TIGR00019 84 LEELEEKIEELEEQLK 99 (360)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 444
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.97 E-value=4.9e+02 Score=26.02 Aligned_cols=103 Identities=29% Similarity=0.342 Sum_probs=65.1
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHH--H----------Hhhh
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYE--E----------LEAK 534 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~--e----------lEak 534 (724)
+++-++++|-..++-+...+.+. +.-..... +.-++..+.+-++++...-+ | +-++
T Consensus 3 ~~~~~le~l~a~lq~l~~qie~L-----------~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~k 71 (145)
T COG1730 3 QTQQELEELAAQLQILQSQIESL-----------QAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAK 71 (145)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEE
Confidence 35567777777777777666554 22233333 55566666677777665442 1 1122
Q ss_pred ccc--------------------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913 535 SKA--------------------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581 (724)
Q Consensus 535 ska--------------------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~ 581 (724)
.+- =+++|-|.++.|-.+...|.++|...-+...+++..+++--++.
T Consensus 72 v~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 72 VKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred eccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 24667788888888888888888888888888877777665544
No 445
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.65 E-value=3.1e+02 Score=29.76 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhHHHHHH
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQIGLKQE 559 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~~lk~e 559 (724)
+.||+ |++++...+-.++.++.+..++|.. -.-..|.|--||-.||....+|.-+
T Consensus 148 ~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 148 QKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33444 4444444444444444444444421 1112345566676676666555443
No 446
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=32.55 E-value=7.2e+02 Score=27.51 Aligned_cols=191 Identities=18% Similarity=0.213 Sum_probs=97.9
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhh----------hHHHHHHHHHhhHHHHHHHHHHh---
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKD----------LEVELETTKQKSKETLQQAILSE--- 462 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkD----------lE~eLe~t~~~~ke~lqQa~l~E--- 462 (724)
..|.+.|..+..-....+..-+..-..|+.|...-+=+-.|-.. +=.+|-+--++-+..|+||.-.=
T Consensus 74 ~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v 153 (353)
T cd09236 74 ERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELV 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35556777777777777777777788888888887777777753 45567777778888888887543
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch--
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI-- 539 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~-- 539 (724)
|+.|....=+++.|..-..+++..+=+-.. ..........+.... ++.+|+.++.+-+ +-.++++.++++|-
T Consensus 154 ~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~--~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~---~~~~~Lk~k~~~DDI~ 228 (353)
T cd09236 154 RRKLDEWEDLIQILTGDERDLENFVPSSRR--PSIPPELERHVRALRVSLEELDRLESRRR---RKVERARTKARADDIR 228 (353)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhCCCCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCch
Confidence 223333233333443333333333321100 000011122233333 4444444333222 22344445555543
Q ss_pred hHHHHHHHHHhhhh-----------HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQ-----------IGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKL 591 (724)
Q Consensus 540 KvLvKEVKsLR~s~-----------~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kl 591 (724)
.+|+.+.+++.... .=..+||..+-.....++..+.++......-+.++.+|
T Consensus 229 ~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f 291 (353)
T cd09236 229 PEILREAARLEREYPATEVAPAHFEDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAF 291 (353)
T ss_pred HHHHHHHHhhhcccccccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777664431 11233444444444555555554444444444444444
No 447
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.48 E-value=4e+02 Score=24.53 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHH
Q 004913 525 SKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE-------KLLHECRI 597 (724)
Q Consensus 525 ~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~-------kllhec~i 597 (724)
.+++...+.......+-|-+--+-|+.+.....+-|...-.......+...+|.........--. .+-.++.-
T Consensus 20 r~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 20 REEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444443333333333333333333333333333 33344444
Q ss_pred HHHHHhhhc
Q 004913 598 LLNRFQACN 606 (724)
Q Consensus 598 L~~rLqEC~ 606 (724)
|..+|+.|.
T Consensus 100 ~e~~l~~~~ 108 (126)
T PF13863_consen 100 LEEKLEEYK 108 (126)
T ss_pred HHHHHHHHH
Confidence 455555554
No 448
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=32.22 E-value=8.4e+02 Score=28.15 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=48.9
Q ss_pred cccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH--hhHhhhh
Q 004913 391 PLDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILS--ERERLTQ 468 (724)
Q Consensus 391 p~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~--ErEr~t~ 468 (724)
|+|+-.||-.+-..||+|.+.. +| |..---..-|+|||++-+.--|-.++..-=..+- |||+++|
T Consensus 87 pl~iL~~mM~qcKnmQe~~~s~-------La------AaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~Q 153 (561)
T KOG1103|consen 87 PLDILDKMMAQCKNMQENAASL-------LA------AAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQ 153 (561)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-------HH------HHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 7888888888888999886532 11 1111122347899999998888887766555544 5666765
Q ss_pred -hhhcHHHHHH
Q 004913 469 -MQWDMEELRQ 478 (724)
Q Consensus 469 -mqwdmeelr~ 478 (724)
+-+..++.+.
T Consensus 154 QiEFe~~e~kK 164 (561)
T KOG1103|consen 154 QIEFEIEEKKK 164 (561)
T ss_pred HHHHHHHHHHH
Confidence 3455555543
No 449
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.21 E-value=5.4e+02 Score=27.79 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=12.0
Q ss_pred HHhhhhhhHHHHHHHHHh
Q 004913 433 LMTKVKDLEVELETTKQK 450 (724)
Q Consensus 433 L~tKvkDlE~eLe~t~~~ 450 (724)
+..++..++.+|+..+..
T Consensus 84 ~~~~l~~a~a~l~~a~a~ 101 (346)
T PRK10476 84 YELTVAQAQADLALADAQ 101 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346777788777765543
No 450
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=1.1e+03 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 458 AILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 458 a~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
+.|.||.+.+|+. -.||.+...|++.++..
T Consensus 486 klm~e~~~~~q~~---k~L~~ek~~l~~~i~~l 515 (698)
T KOG0978|consen 486 KLMSERIKANQKH---KLLREEKSKLEEQILTL 515 (698)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3455666666643 34555555555555443
No 451
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.12 E-value=6.6e+02 Score=26.90 Aligned_cols=19 Identities=5% Similarity=-0.288 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhccccc
Q 004913 592 LHECRILLNRFQACNANLY 610 (724)
Q Consensus 592 lhec~iL~~rLqEC~~~~~ 610 (724)
-.+..-++..|+.|.+.=+
T Consensus 191 ~~~l~~a~~~l~~~~I~AP 209 (331)
T PRK03598 191 QAALAQAELNLQDTELIAP 209 (331)
T ss_pred HHHHHHHHHHHhcCEEECC
Confidence 3344556677777766443
No 452
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.06 E-value=7.2e+02 Score=27.30 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 515 DATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 515 ~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+.=+..++++.+.+.+||.+.. -|.++...|=.-+.++..-+..+=..|.+++.++-
T Consensus 144 ~aDk~ile~qk~dk~~Le~kq~----~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~ 200 (265)
T COG3883 144 DADKKILEQQKEDKKSLEEKQA----ALEDKLETLVALQNELETQLNSLNSQKAEKNALIA 200 (265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777666543 24444444444444444444444444444444443
No 453
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=32.06 E-value=2.4e+02 Score=31.95 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004913 520 QLENLSKRYEELEAKSK--------ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKL 591 (724)
Q Consensus 520 ~~e~l~k~~~elEaksk--------ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kl 591 (724)
.++.+.+++.++|++.. +...-+.||...|..-...+++ +.+..++..++..++..|... .-+.-+
T Consensus 24 ~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~-~~~~~~d~~~l~el~~~e~D~-----e~~~~a 97 (364)
T TIGR00020 24 DPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEE-LKNSLEDLSELLELAVEEDDE-----ETFNEL 97 (364)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCH-----HHHHHH
Confidence 34555666777775432 2234566777777776655554 667777777777777543221 122333
Q ss_pred HHHHHHHHHHHhhhc
Q 004913 592 LHECRILLNRFQACN 606 (724)
Q Consensus 592 lhec~iL~~rLqEC~ 606 (724)
..|+.-|.+.|++--
T Consensus 98 ~~e~~~l~~~l~~le 112 (364)
T TIGR00020 98 DAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 454
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.89 E-value=9.8e+02 Score=30.53 Aligned_cols=132 Identities=17% Similarity=0.088 Sum_probs=74.8
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhh----hhhHHHHHHhhhhhhHHHHHHHHHhhHHHH-----HHHHHHhhHhhhhhhhc
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQ----EMTVKDYLMTKVKDLEVELETTKQKSKETL-----QQAILSERERLTQMQWD 472 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnq----e~avk~fL~tKvkDlE~eLe~t~~~~ke~l-----qQa~l~ErEr~t~mqwd 472 (724)
+.+++.++-..++++++|..+||- ..+.++==..|+++||.++.-.+-+-.... .|+-...+-++-+-=|.
T Consensus 511 ~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~ 590 (913)
T KOG0244|consen 511 SGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHI 590 (913)
T ss_pred hhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 457888888999999999988874 444555556788899988876654433221 12222334444444577
Q ss_pred HHHHHHHHH-----HHHHHhccc-cCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 004913 473 MEELRQKSL-----EMEWKLKSK-QDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 473 meelr~k~~-----e~E~~lks~-~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEa 533 (724)
|+..+.+++ +-|...+.. ..+|...-.+++....+++......-.++|.--|+..-+|.=+
T Consensus 591 ~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~ 657 (913)
T KOG0244|consen 591 AKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASA 657 (913)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655543 233333333 2334444445555555666322333345555556665555433
No 455
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=31.86 E-value=2.9e+02 Score=34.60 Aligned_cols=86 Identities=23% Similarity=0.236 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhh
Q 004913 552 SQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALL 631 (724)
Q Consensus 552 s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL 631 (724)
.+.++++|.++...+|.++-++..+-.+-...++..-..++..=|.|.+.+=--- +.=++.+.+.=.++++|-|
T Consensus 137 e~~~v~~eR~~L~~e~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~~~l~~~------~~is~~l~~~q~~~~~d~l 210 (835)
T COG3264 137 EQFEVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELLNSLLSQR------EAISLQLNQQQLSAASDEL 210 (835)
T ss_pred chhHHHHHHHHHhhhHHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHHHHHhhc------cccCHhhhHHHHHHHHHHH
Confidence 4557778888888888888777766655555555444455555544444331111 1112333444456666666
Q ss_pred cccchhHHHHHH
Q 004913 632 TSSDDQISLLIT 643 (724)
Q Consensus 632 ~tsDnrI~lLla 643 (724)
..-..+.+--++
T Consensus 211 ~~~~~~~~fW~~ 222 (835)
T COG3264 211 RSLLHQQSFWVS 222 (835)
T ss_pred HHHHHHhhhhHH
Confidence 666665554443
No 456
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.82 E-value=3.7e+02 Score=23.96 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 004913 591 LLHECRILLNR 601 (724)
Q Consensus 591 llhec~iL~~r 601 (724)
+|+++.-++.+
T Consensus 101 ~m~~fq~~Q~~ 111 (117)
T smart00503 101 VMNEFQRLQRK 111 (117)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 457
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=31.79 E-value=4.3e+02 Score=28.58 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHH--HHHHHHHHHHHhhhhHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKS--KTEELLQQERQTHNHMKTV 587 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~--e~E~~l~~Er~~~e~~~~a 587 (724)
++.+++.+-+... +.-++|+++--.....|.++...+|.+-.+.-+.+++.+...+ +++++=.+=++--+.+..|
T Consensus 74 il~QTE~isk~~~---~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~A 150 (237)
T cd07685 74 LVSQTETLSQVLR---KHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQA 150 (237)
T ss_pred HHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7677776665554 4456777887788899999999988888777777777777554 4555544444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCceecccCChhhHHHhhcccchhHHHHHHHHhhhhhhhhh
Q 004913 588 REKLLHECRILLNRFQACNANLYAEEEDNVILESSSAADALALLTSSDDQISLLITEAQLLAEDSKA 654 (724)
Q Consensus 588 r~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL~tsDnrI~lLlaEaqll~~d~e~ 654 (724)
|. +.++-+-+ .+.+++. - --.+|..-|-..=|.-=|.|-+|+.+-+....
T Consensus 151 R~-----------K~ekas~~---K~~~K~~--E-Ky~~m~~KL~~~hN~YlL~I~~An~~kdkyy~ 200 (237)
T cd07685 151 KR-----------KYQEASKD---KDRDKAK--E-KYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQ 200 (237)
T ss_pred HH-----------HHHhcccc---hhHHHHH--H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 44 44443211 1222210 0 12456666666678888888899988666544
No 458
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=31.51 E-value=6.2e+02 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHhhhhHH
Q 004913 526 KRYEELEAKSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 526 k~~~elEakskad~KvLvKEVKsLR~s~~~ 555 (724)
++.+++-.+...|+-.+.++++-+.+|+.+
T Consensus 79 kr~e~I~~k~~~dK~e~er~KrEin~s~I~ 108 (185)
T PF08703_consen 79 KRLESIKEKKTKDKDEQERLKREINRSHIQ 108 (185)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 345555577777887777777777777653
No 459
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=31.04 E-value=5.6e+02 Score=35.22 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=68.2
Q ss_pred HHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhH---HHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 406 ERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLE---VELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 406 ~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE---~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
+.+|...+.+--.|+.+=-...+ -.-+||++|- .+|++|.+.....|+||.-. +. +.--.+++..++.+
T Consensus 1322 k~~l~~i~~eG~~L~~ekpe~~~---~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q-~~----~~qs~~D~~~~l~~ 1393 (2473)
T KOG0517|consen 1322 KEWLEKIEKEGQELVSEKPELKA---LVEKKLRELHKQWDELEKTTQEKGRKLFQANRQ-EL----LLQSLADAKKKLDE 1393 (2473)
T ss_pred hHHHHHHHHHHHHHHhcCCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHH
Confidence 34444444444444433322222 2345677665 58999999999999999877 22 22357899999999
Q ss_pred HHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHH
Q 004913 483 MEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKR 527 (724)
Q Consensus 483 ~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~ 527 (724)
||..|+|..-++-.... +.+.+..+ +..||.+..++++.|+.+
T Consensus 1394 le~qL~S~D~G~DL~Sv--n~llkKqq~lEsem~~~~~kv~el~s~ 1437 (2473)
T KOG0517|consen 1394 LESQLQSDDTGKDLTSV--NDLLKKQQVLESEMEVRAQKVAELQSQ 1437 (2473)
T ss_pred HHHHhcCCCCCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998555544332 44444444 555555555555555443
No 460
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=30.88 E-value=7.9e+02 Score=27.44 Aligned_cols=22 Identities=0% Similarity=-0.170 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 004913 584 MKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 584 ~~~ar~kllhec~iL~~rLqEC 605 (724)
+..+......+..-.....+.-
T Consensus 153 ~~~a~~~y~d~a~n~a~~~~~~ 174 (332)
T TIGR01541 153 ARSGLADYGETATNVASAAAQL 174 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 461
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.81 E-value=6.7e+02 Score=26.57 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhccccc
Q 004913 593 HECRILLNRFQACNANLY 610 (724)
Q Consensus 593 hec~iL~~rLqEC~~~~~ 610 (724)
.+....+.+|..|.+.=+
T Consensus 193 ~~l~~a~~~l~~~~I~AP 210 (334)
T TIGR00998 193 ERLKTAWLALKRTVIRAP 210 (334)
T ss_pred HHHHHHHHHhhCcEEEcC
Confidence 344555566777766544
No 462
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=30.79 E-value=4.7e+02 Score=27.99 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004913 511 LQELDATKEQLENLSKRYE 529 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~ 529 (724)
..++..++.+++.+...+.
T Consensus 151 ~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 151 RSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 463
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=1.3e+02 Score=37.39 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHH
Q 004913 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSK 526 (724)
Q Consensus 453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k 526 (724)
..+.+.+...++.+.. .|.++.+-.+.++++...-...+........+-. +..++..+++|++.|-.
T Consensus 459 ~e~~~~~s~s~~~~~~-------~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~ 526 (847)
T KOG0998|consen 459 NELDAQKSQSKEKFST-------TRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEG 526 (847)
T ss_pred hhhhhhhhHHHhhhhh-------hhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhh
Confidence 3445555555666666 6777777777777765443333333322222333 44455555555533333
No 464
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=30.61 E-value=2.2e+02 Score=30.09 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHH-----------HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH
Q 004913 520 QLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLK-----------QELSQMLNEKSKTEELLQQERQTHNHMKTVR 588 (724)
Q Consensus 520 ~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk-----------~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar 588 (724)
+|....++.+.+|.+-|+. |-+|+++||.+|.+-. ..|.+.+.||.| +||.-|-+...- -
T Consensus 14 ~LQaa~ekRE~lE~rLR~~---lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEE--rILaLEad~~kW----E 84 (205)
T PF12240_consen 14 QLQAACEKREQLERRLRTR---LERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEE--RILALEADMTKW----E 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHH--HHHHHHHHHHHH----H
Confidence 3344457888888888875 7899999999987643 246677777764 555555432221 1
Q ss_pred HHHHHHHHH
Q 004913 589 EKLLHECRI 597 (724)
Q Consensus 589 ~kllhec~i 597 (724)
.|.|.||.+
T Consensus 85 qkYLEEs~m 93 (205)
T PF12240_consen 85 QKYLEESAM 93 (205)
T ss_pred HHHHHHHHH
Confidence 356777764
No 465
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=30.32 E-value=2.2e+02 Score=25.46 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
++-|.=.||.+....+|||++++=+.--.-+++
T Consensus 20 ~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RVi 52 (70)
T PF08606_consen 20 LMLENFTLRKQLDQTRQELSHALYQHDAACRVI 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 578899999999999999999987765555554
No 466
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.30 E-value=5.6e+02 Score=26.21 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=6.8
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 004913 543 VKEVKFLRSSQIGLKQEL 560 (724)
Q Consensus 543 vKEVKsLR~s~~~lk~el 560 (724)
..+++.|.....+|++++
T Consensus 126 ~~~i~~L~~e~~~L~~~~ 143 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQV 143 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 467
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=30.28 E-value=1e+03 Score=28.41 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=37.8
Q ss_pred hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 004913 501 EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK 547 (724)
Q Consensus 501 ~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK 547 (724)
.+.+..|++ ..+++.-++.|+.-|.-+..++|||-+-.---+..++.
T Consensus 311 ~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~ 358 (554)
T KOG4677|consen 311 FEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIF 358 (554)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 478888999 88999999999999999999999997755444444433
No 468
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.11 E-value=6.1e+02 Score=28.61 Aligned_cols=109 Identities=21% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcH-----
Q 004913 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDM----- 473 (724)
Q Consensus 399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdm----- 473 (724)
.|+...|+++|...+...+.|..||. ......++..+...|+...++-...+++-+-.-+.++..++=-+
T Consensus 274 ~rL~~a~~~~L~~~~~~L~~L~~rL~-----~~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP 348 (438)
T PRK00286 274 QRLARAMRRRLEQKRQRLDQLARRLK-----FQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNP 348 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q ss_pred ----HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004913 474 ----EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 474 ----eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~el 531 (724)
+..++++.+++..|... +...+...+.+|+.+.+++.-+
T Consensus 349 ~~~L~r~~qrL~~L~~rL~~a-------------------~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 349 QRRIERAQQRLEQLEQRLRRA-------------------MRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhC
No 469
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.03 E-value=92 Score=26.17 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 004913 543 VKEVKFLRSS 552 (724)
Q Consensus 543 vKEVKsLR~s 552 (724)
-+|++.|+++
T Consensus 44 ~~ei~~l~~~ 53 (80)
T PF04977_consen 44 KEEIERLKND 53 (80)
T ss_pred HHHHHHhcCC
Confidence 3444444444
No 470
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.91 E-value=2.5e+02 Score=33.34 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=31.6
Q ss_pred hhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913 533 AKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL 573 (724)
Q Consensus 533 akskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~ 573 (724)
.....+..-+++||+.|.+...+|++|+++.-+++.+++..
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455667788888888888888888888888888877764
No 471
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.91 E-value=2.1e+02 Score=34.93 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=66.9
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQT 580 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~ 580 (724)
+.+...+. +++++.+.+.++.+|-....+.---.. .+-|..++|.-+...|+..|.++.++|.+
T Consensus 57 e~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~----~~~k~e~tLke~l~~l~~~le~lr~qk~e----------- 121 (660)
T KOG4302|consen 57 EEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE----ISDKIEGTLKEQLESLKPYLEGLRKQKDE----------- 121 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----cccccCccHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44455555 999999999999999988877654444 22234446666666666666666665543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhh
Q 004913 581 HNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAAD 626 (724)
Q Consensus 581 ~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~d 626 (724)
..+-=..++|++.-|++.|-+- +...+.+++|.+-+++
T Consensus 122 ---R~~ef~el~~qie~l~~~l~g~-----~~~~~~~~~D~~dlsl 159 (660)
T KOG4302|consen 122 ---RRAEFKELYHQIEKLCEELGGP-----EDLPSFLIADESDLSL 159 (660)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCC-----ccCCcccccCcccccH
Confidence 2233456888888888888665 3334556666665653
No 472
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=29.79 E-value=2.6e+02 Score=25.87 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004913 519 EQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRIL 598 (724)
Q Consensus 519 ~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL 598 (724)
..||.+.+..---+.---.+.+-|.+||+-||.+ .+=--++.++--|-..+-.=+.+=+.-. .+-+|.-++.|++.|
T Consensus 6 ~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~q-ve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L 82 (86)
T PF12711_consen 6 KRLEKLLDGKLPSESYLEEENEALKEEIQLLREQ-VEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISEL 82 (86)
T ss_pred HHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Q ss_pred HHHH
Q 004913 599 LNRF 602 (724)
Q Consensus 599 ~~rL 602 (724)
++.|
T Consensus 83 ~~~l 86 (86)
T PF12711_consen 83 RDQL 86 (86)
T ss_pred HhhC
No 473
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.66 E-value=5e+02 Score=29.99 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhh---------------hhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRS---------------SQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~---------------s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
.++..++++++.|+.+..+++++..+-...+ +=+.+++. +-.++.+-+.-+-++..++-..+.+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 577 ERQTHNHMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 577 Er~~~e~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
=. ...+++-.++..|+++|..++
T Consensus 150 ~~-------~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 150 AE-------RRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHhhc
No 474
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.62 E-value=2.8e+02 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
+.+++++..|+....+|.+....++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776666655443
No 475
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=29.32 E-value=2.8e+02 Score=24.76 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHH---HHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913 519 EQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIG---LKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLL 592 (724)
Q Consensus 519 ~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~---lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kll 592 (724)
..+++|.++.+|+=.|. +..+.+ ++.+..+.-.-|...|+.|+.|+=-...|.+=.+.+|
T Consensus 3 kdv~~l~~EkeeL~~kl--------------k~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAEIM 65 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKL--------------KKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAEIM 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666654443 222222 2333334455567888889999876666655555444
No 476
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=29.19 E-value=3.1e+02 Score=33.22 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred ccchhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH--------HHhh
Q 004913 392 LDQRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAI--------LSER 463 (724)
Q Consensus 392 ~d~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~--------l~Er 463 (724)
+|..+.||=|-+-|=...-...-+.+=|-.-|-..--||.-|-.|++.||.||.+.|++.-+.-|.|- |+-|
T Consensus 314 LetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqR 393 (832)
T KOG2077|consen 314 LETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQR 393 (832)
T ss_pred HhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHH
Q ss_pred HhhhhhhhcHHHHHHHHHH
Q 004913 464 ERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 464 Er~t~mqwdmeelr~k~~e 482 (724)
.|||- -|..|-+||
T Consensus 394 kRFTR-----vEMaRVLMe 407 (832)
T KOG2077|consen 394 KRFTR-----VEMARVLME 407 (832)
T ss_pred hhhHH-----HHHHHHHHH
No 477
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=28.85 E-value=1e+03 Score=29.04 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCC
Q 004913 416 MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNP 495 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~ 495 (724)
++..+++|.|...=+++=..|.-.|..+|...++..-+.+.-.+.. .+.+||.|-++-...+-.+..++
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~----~e~~q~e~~~~Q~~~e~~~~e~~------- 487 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRL----YEDIQQELSEIQEENEAAKDEVK------- 487 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred cccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913 496 HAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE 566 (724)
Q Consensus 496 ~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e 566 (724)
+.+....++-+..+..-++.++-.++. +..|+-+|++=-..-++-..+++.+
T Consensus 488 ------e~~~al~el~~~~~~~~~~~~~~~~~n-------------~~sel~sl~~~~~~~~~r~~~~~~~ 539 (607)
T KOG0240|consen 488 ------EVLTALEELAVNYDQKSEEKESKLSQN-------------LKSELQSLQEPSEHQSKRITELLSE 539 (607)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHhhhhhhh-------------hHHHHHhhhhcccchhHHHHHHHHH
No 478
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.85 E-value=1.3e+02 Score=34.23 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQ 558 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~ 558 (724)
++.+++.+|.+...++|+....- +.+.+..-|..|+|.|+....+|++
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEA 87 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555565554421 1122333455555555444433333
No 479
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=7.9e+02 Score=26.68 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=21.0
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhh-----hhHHHHHHhhhhhhH
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQE-----MTVKDYLMTKVKDLE 441 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe-----~avk~fL~tKvkDlE 441 (724)
+|.++-++|...-+|+-..+..---=+++-++| ..|.+++..+++-+|
T Consensus 27 ~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne 79 (246)
T KOG4657|consen 27 QRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNE 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444333333332222223333332 345556666666555
No 480
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=9.9e+02 Score=28.41 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHH-HH
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELR-QK 479 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr-~k 479 (724)
-+..+..|+.-++.|-|--+|.||+-++++. .++-+|=...+.+|+-.-....|. |+-.-- -+.|.-| ++
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~---~~~~~ltqqwed~R~pll~kkl~L----r~~l~~--~e~e~~e~~~ 346 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELN---KQMEELTQQWEDTRQPLLQKKLQL----REELKN--LETEDEEIRR 346 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHH----HHHHhc--ccchHHHHHH
Confidence 3556778999999999999999999988854 455566555555555433322221 100000 1122223 56
Q ss_pred HHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHH--HHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhh
Q 004913 480 SLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKE--QLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQ 553 (724)
Q Consensus 480 ~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~--~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~ 553 (724)
.++||..|...--+ -++-..... |..+|...-. +-..+.++..|+-+-+| +||--..-|-|.|+.+.
T Consensus 347 IqeleqdL~a~~ee-------i~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ 419 (521)
T KOG1937|consen 347 IQELEQDLEAVDEE-------IESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQE 419 (521)
T ss_pred HHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776655100 011111122 3333321111 02233445555555444 44444444666676665
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 554 IGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 554 ~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
--+..-|.+++.- +-.+|=++-.+--+++-|- |+|--+-.-|+.|=||
T Consensus 420 ns~se~L~Rsfav---tdellf~sakhddhvR~ay-kllt~iH~nc~ei~E~ 467 (521)
T KOG1937|consen 420 NSESEALNRSFAV---TDELLFMSAKHDDHVRLAY-KLLTRIHLNCMEILEM 467 (521)
T ss_pred HHHHHHHhhhHHH---HHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5555555554432 2244544444433443222 4444445556666666
No 481
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.41 E-value=1.3e+03 Score=29.19 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 437 VKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 437 vkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
++.+|.++++..+. ++++.-.....+..+.-+...+...+.+.+..+.
T Consensus 706 l~qae~~le~aq~~----~q~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 753 (1042)
T TIGR00618 706 LRELETHIEEYDRE----FNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753 (1042)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544333 3333333335666666666666666555554433
No 482
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.32 E-value=1.7e+02 Score=30.97 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
.|||||++++-..+.|. .++..+.+|.. -.+++....+.|....||.+|.
T Consensus 2 s~EELRq~Ll~TTlELE----------~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEA 52 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELE----------ATKMEANEELRKREEQIAHLKDLLKKAYQERDEA 52 (214)
T ss_pred CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888776555443 23344444444 4444455555555555555543
No 483
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.27 E-value=1.2e+02 Score=34.41 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=44.9
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK--ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk--ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
..+..+.+ +.+++...+++++.+.+....++...+ +.-.-..+.++.|+....+|++++.+...+..+++.-|.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 888888888888888888877766332 122233445556666666666666655555554444443
No 484
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=28.21 E-value=2.1e+02 Score=33.90 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH----HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVL----VKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvL----vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
+.++++.+.+.++.|.++..++|++-- +--+- .+++..|-....++++++++++.+|.+++..|
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKLG-DSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888888888888888763 22121 23577777888899999999999999998654
No 485
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.07 E-value=4.8e+02 Score=31.84 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
...++....+++|.|..+..+|++.-. -|-+|+=.|++...+++.+..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~e----e~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELE----ELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666654332 223555555555555555444
No 486
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=27.80 E-value=7e+02 Score=31.01 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHhhh
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKAD---IKVLVKEVKFLRSS 552 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad---~KvLvKEVKsLR~s 552 (724)
|.+.++++++.|++++.+++.=-..+ .|++.+|.+.++..
T Consensus 428 e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkk 470 (800)
T TIGR01063 428 EREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQ 470 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 44455555555565555555433332 35666666666544
No 487
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.74 E-value=3.3e+02 Score=31.64 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=8.0
Q ss_pred ccccccCceeccc
Q 004913 609 LYAEEEDNVILES 621 (724)
Q Consensus 609 ~~~ee~~~~~~~~ 621 (724)
.-.+|.+|..|..
T Consensus 115 vg~de~~n~~vr~ 127 (429)
T COG0172 115 VGKDEDDNVEVRR 127 (429)
T ss_pred cCCCcccceEEEE
Confidence 3356777776654
No 488
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.65 E-value=1.8e+02 Score=27.06 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHH
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKS 480 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~ 480 (724)
+...|.++.++ +.|++.|.+|+.. .-.+|..+|.+++..=. +.-+..++=.|.+++-.+
T Consensus 23 ~~~~l~~~~a~-~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt-------------~~dv~~L~l~l~el~G~~ 81 (106)
T PF10805_consen 23 FWLWLRRTYAK-REDIEKLEERLDE-------HDRRLQALETKLEHLPT-------------RDDVHDLQLELAELRGEL 81 (106)
T ss_pred HHHHHHHhhcc-HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHhccccCCCCcccchhhhhHHHHhHHHH
Q 004913 481 LEMEWKLKSKQDGNPHAESMEESTVKDKNVLQE 513 (724)
Q Consensus 481 ~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qe 513 (724)
..++.+++.. .....+.-|+++.++
T Consensus 82 ~~l~~~l~~v--------~~~~~lLlE~~lk~~ 106 (106)
T PF10805_consen 82 KELSARLQGV--------SHQLDLLLENELKKD 106 (106)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHhccC
No 489
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.61 E-value=2e+02 Score=31.83 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=15.2
Q ss_pred hcccchhHHHHHHHHhhhhhhhhh
Q 004913 631 LTSSDDQISLLITEAQLLAEDSKA 654 (724)
Q Consensus 631 L~tsDnrI~lLlaEaqll~~d~e~ 654 (724)
|..+--+|..|=+|.-.+-.+-|-
T Consensus 104 l~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 104 LNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445777777777777665554
No 490
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.55 E-value=1.1e+03 Score=27.85 Aligned_cols=130 Identities=20% Similarity=0.248 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc-------chhHHHHHHH
Q 004913 476 LRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA-------DIKVLVKEVK 547 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska-------d~KvLvKEVK 547 (724)
|.++.++..++|--.++..-..+...+...++++ |.|.+..-..+-..+..+|.+.-..+.. ..|.||=+++
T Consensus 150 ~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLe 229 (446)
T KOG4438|consen 150 LDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLE 229 (446)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888887777777777788888888 7776666655666677677665554444 2355555444
Q ss_pred H----HhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHH-----------HHHHHHHHHhhhcccc
Q 004913 548 F----LRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLH-----------ECRILLNRFQACNANL 609 (724)
Q Consensus 548 s----LR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllh-----------ec~iL~~rLqEC~~~~ 609 (724)
. |+++.-.==.+|..++.++ .-+|++|+...- .-.+-++.|| |.-.+..-+++|.|..
T Consensus 230 e~~~~LktqIV~sPeKL~~~leem---k~~l~k~k~~~~-~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~ 302 (446)
T KOG4438|consen 230 ENANCLKTQIVQSPEKLKEALEEM---KDLLQKEKSAMV-ELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY 302 (446)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3 5555444444555555444 445666653222 2233344444 3445555666666543
No 491
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.53 E-value=1.1e+02 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 004913 673 DNELREVIADILVDNAKLRKQVNSVLRRALL 703 (724)
Q Consensus 673 d~elrk~lad~~idna~LRkq~Nsv~r~al~ 703 (724)
=.++++|++-.==+|+.|+.|||.+.+..-.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999987543
No 492
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.51 E-value=6.8e+02 Score=25.58 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913 575 QQERQTHNHMKTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 575 ~~Er~~~e~~~~ar~kllhec~iL~~rLq 603 (724)
..|.-+..--......+-||+..+-.+..
T Consensus 147 T~eEAk~~Ll~~le~e~~~e~a~~ir~~e 175 (201)
T PF12072_consen 147 TAEEAKEILLEKLEEEARREAAALIRRIE 175 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555556665555543
No 493
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.45 E-value=3.6e+02 Score=29.39 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK 536 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk 536 (724)
-.|++|++|.|.-.+++.+ . ..+..|.+ ..+.-+.+.++.|.+.+.- ++|+|+|
T Consensus 107 ~ke~~~Kk~~e~~~~lq~E--------l--~~~~~EL~KaKK~Y~~~cq~~e~~ReK~-~~e~K~~ 161 (260)
T cd07677 107 YKEQQLKRCVDQLTKIQAE--------L--QETVKDLAKGKKKYFETEQMAHAVREKA-DIEAKSK 161 (260)
T ss_pred HHHHHHHHHHHHHHHHHHH--------H--HHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHhcc
Confidence 3577888888888888776 2 55566666 6666666666677555444 6777644
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.44 E-value=5.6e+02 Score=31.07 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHH
Q 004913 449 QKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSK 526 (724)
Q Consensus 449 ~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k 526 (724)
+.|.+-|-|||-. +|.++.++--+++.+ |---......+..-.|+.. +.||..-++++-+-|.+
T Consensus 558 ~E~~~lL~~a~~v--------------frEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~ 623 (741)
T KOG4460|consen 558 EECLQLLSRATQV--------------FREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLAD 623 (741)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----------------------------hhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 527 RYEEL----------------------------EAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 527 ~~~el----------------------------Eakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
+++|. |--.|.+.-.+-+||.+|-++...+++-.+. +|.-.+.++..=+
T Consensus 624 R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K---Q~~H~~~v~~al~ 700 (741)
T KOG4460|consen 624 RYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK---QQQHMEKVLSALP 700 (741)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcc
Q ss_pred HhhhhHHHHHHHHHHHH
Q 004913 579 QTHNHMKTVREKLLHEC 595 (724)
Q Consensus 579 ~~~e~~~~ar~kllhec 595 (724)
...=--...-.+-+.++
T Consensus 701 K~~Y~l~~~Q~~~iqsi 717 (741)
T KOG4460|consen 701 KPTYILSAYQRKCIQSI 717 (741)
T ss_pred CCcccccHHHHHHHHHH
No 495
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.79 E-value=4.4e+02 Score=29.01 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhccccC
Q 004913 474 EELRQKSLEMEWKLKSKQD 492 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~ 492 (724)
.|||++..++....++..+
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4778877777777777755
No 496
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=26.75 E-value=1.4e+02 Score=34.48 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=43.6
Q ss_pred ccCCCCcccch--hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhh-----hcccchhHHHHHHHHHhhhhHHHHHHH
Q 004913 490 KQDGNPHAESM--EESTVKDKN-VLQELDATKEQLENLSKRYEELEA-----KSKADIKVLVKEVKFLRSSQIGLKQEL 560 (724)
Q Consensus 490 ~~~~~~~~e~~--~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEa-----kskad~KvLvKEVKsLR~s~~~lk~el 560 (724)
-.+|.+|.=.- ..-..-+.+ +.+.++.+++|++.+++..++++. ..+.+++.|.++++.|+....-|+..+
T Consensus 145 FG~E~tH~C~m~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 145 FGNEPTHDCLMGDNDPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENML 223 (475)
T ss_pred CCCCCceeeEeecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665443 222333444 777788888888888888888765 445666666666666666554444433
No 497
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.67 E-value=7.5e+02 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=16.3
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
++.+++=-++.|-.+|...+..+..+
T Consensus 86 ~~~~~~~~l~~L~~ri~~L~~~i~ee 111 (247)
T PF06705_consen 86 KQEQLQSRLDSLNDRIEALEEEIQEE 111 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444545555777777777777666
No 498
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.53 E-value=4.9e+02 Score=30.71 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHhhh--hhhHHHHHHhh
Q 004913 417 EDLITRLNQ--EMTVKDYLMTK 436 (724)
Q Consensus 417 EDLiaRLnq--e~avk~fL~tK 436 (724)
|.-+.|++| -..+|+|+..+
T Consensus 338 e~~~~e~~qsqlen~k~~~e~~ 359 (493)
T KOG0804|consen 338 EQIMSEYEQSQLENQKQYYELL 359 (493)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444 33455555433
No 499
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.46 E-value=2.2e+02 Score=32.07 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
+-+..++++++.|+++.++++++-..-. ...++..++++++...-+++.+++.++.+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~--------k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP--------KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=26.36 E-value=7.2e+02 Score=25.46 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-
Q 004913 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN- 509 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~- 509 (724)
+||..+||+-+-++..---..-+.=.||+.. |=--..--=+++..-.-.-..|-.|-+-.+.-....-..+.+..+.+
T Consensus 5 ~~l~~~vkk~a~~~p~~ess~ee~~ve~~~~-rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eeler 83 (157)
T COG3352 5 DNLKKLVKKEATEEPQQESSDEEKQVEAIHS-RVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELER 83 (157)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhHhHHHhhc-ccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
|..++..+...+|.+++...-|=-+---+... +|--|+.+-.+|+..++++.+.-.++
T Consensus 84 Le~~iKdl~~lye~Vs~d~Npf~s~~~qes~~---~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 84 LEENIKDLVSLYELVSRDFNPFMSKTPQESRG---IVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHhccchhh
Done!