Query 004913
Match_columns 724
No_of_seqs 164 out of 1015
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lui_A Sorting nexin-17, SNX17 99.9 3.5E-25 1.2E-29 199.2 8.1 106 48-162 4-109 (115)
2 3iq2_A Sorting nexin-7; SNX7, 99.9 1.3E-24 4.5E-29 201.8 10.8 117 48-166 9-129 (138)
3 2csk_A Sorting nexin 12; SNX12 99.9 1.3E-23 4.3E-28 195.6 9.6 114 48-164 11-133 (146)
4 2i4k_A Sorting nexin-1, SNX1; 99.9 2.7E-24 9.3E-29 193.6 3.8 112 48-161 4-127 (128)
5 4az9_A Sorting nexin-24; prote 99.9 7.4E-23 2.5E-27 188.7 12.8 125 10-163 3-127 (129)
6 1ocs_A Sorting nexin GRD19; so 99.9 5.4E-23 1.9E-27 195.5 11.7 115 48-162 36-159 (162)
7 3p0c_A Nischarin; structural g 99.9 2.3E-23 7.9E-28 191.7 6.5 109 49-163 17-126 (130)
8 1xte_A Serine/threonine-protei 99.9 5.5E-23 1.9E-27 193.5 8.9 108 48-163 8-116 (154)
9 3dyt_A Sorting nexin-9; 3-heli 99.9 1.3E-23 4.3E-28 221.4 5.0 126 12-162 3-129 (366)
10 4akv_A Sorting nexin-33; trans 99.9 2E-23 6.7E-28 222.2 6.4 120 19-162 30-149 (386)
11 2v14_A Kinesin-like motor prot 99.9 2.9E-22 1E-26 185.0 10.5 110 48-164 6-118 (134)
12 1kmd_A VAM7P, vacuolar morphog 99.9 1.3E-22 4.4E-27 182.5 7.6 99 48-162 6-115 (117)
13 1h6h_A Neutrophil cytosol fact 99.9 2.2E-21 7.6E-26 179.4 11.5 110 45-162 18-136 (143)
14 3hpc_X SNX5 protein; sprting n 99.8 5E-21 1.7E-25 183.4 10.6 112 45-162 9-151 (161)
15 2ar5_A Phosphoinositide 3-kina 99.8 1.6E-20 5.6E-25 170.4 11.5 112 44-161 2-115 (121)
16 2ett_A Sorting nexin-22; PX do 99.8 9.5E-21 3.3E-25 174.5 9.1 92 63-164 28-119 (128)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.8 1.7E-19 5.7E-24 167.2 13.1 110 45-163 4-123 (141)
18 2iwl_X Phosphatidylinositol-4- 99.8 4.4E-20 1.5E-24 171.1 7.3 112 44-161 17-130 (140)
19 2v6v_A BUD emergence protein 1 99.7 8.1E-18 2.8E-22 160.0 11.9 103 48-162 19-136 (156)
20 2l73_A NADPH oxidase organizer 99.7 2.8E-17 9.5E-22 155.3 9.4 96 63-162 22-128 (149)
21 2wwe_A Phosphoinositide-3-kina 99.7 3.3E-17 1.1E-21 152.3 7.6 106 42-160 20-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.6 8.5E-15 2.9E-19 152.6 11.0 110 45-162 21-139 (341)
23 1c1g_A Tropomyosin; contractIl 97.6 0.016 5.6E-07 54.5 23.0 9 476-484 151-159 (284)
24 1c1g_A Tropomyosin; contractIl 97.5 0.03 1E-06 52.7 23.2 52 398-449 4-55 (284)
25 1i84_S Smooth muscle myosin he 97.2 0.00047 1.6E-08 82.7 8.0 67 466-532 915-982 (1184)
26 1i84_S Smooth muscle myosin he 97.2 0.00081 2.8E-08 80.8 9.8 19 30-48 27-45 (1184)
27 2dfs_A Myosin-5A; myosin-V, in 96.1 0.12 4E-06 62.3 17.6 60 504-563 982-1042(1080)
28 3na7_A HP0958; flagellar bioge 95.8 0.49 1.7E-05 47.7 18.1 164 425-602 22-188 (256)
29 3oja_B Anopheles plasmodium-re 95.5 0.008 2.7E-07 65.6 4.2 67 538-604 517-583 (597)
30 3na7_A HP0958; flagellar bioge 94.7 0.29 9.9E-06 49.4 12.7 56 399-454 24-79 (256)
31 3oja_B Anopheles plasmodium-re 94.7 0.4 1.4E-05 52.3 14.7 24 388-411 391-414 (597)
32 3oja_A Leucine-rich immune mol 94.1 0.46 1.6E-05 51.0 13.3 103 471-578 374-476 (487)
33 3vkg_A Dynein heavy chain, cyt 93.9 3.4 0.00012 55.1 22.6 43 542-584 2033-2075(3245)
34 2dfs_A Myosin-5A; myosin-V, in 93.7 0.35 1.2E-05 58.2 12.6 120 428-558 921-1044(1080)
35 3o0z_A RHO-associated protein 93.7 2.6 8.8E-05 41.2 16.1 148 434-603 5-153 (168)
36 3vkg_A Dynein heavy chain, cyt 92.8 1.4 4.8E-05 58.6 16.8 63 547-609 2010-2072(3245)
37 2v71_A Nuclear distribution pr 92.0 3.3 0.00011 41.1 14.6 139 436-602 39-177 (189)
38 1s35_A Beta-I spectrin, spectr 91.6 9.1 0.00031 35.9 17.4 165 468-654 4-179 (214)
39 3ghg_A Fibrinogen alpha chain; 91.4 0.28 9.6E-06 55.0 7.0 110 506-615 58-182 (562)
40 1nfn_A Apolipoprotein E3; lipi 90.8 1.8 6.3E-05 42.3 11.4 92 396-490 24-125 (191)
41 3o0z_A RHO-associated protein 88.4 13 0.00045 36.3 15.0 122 464-602 6-127 (168)
42 3s84_A Apolipoprotein A-IV; fo 85.9 24 0.00081 36.3 16.3 87 453-553 161-247 (273)
43 3s84_A Apolipoprotein A-IV; fo 83.1 45 0.0015 34.3 19.5 25 465-489 60-84 (273)
44 3fb2_A Spectrin alpha chain, b 82.9 29 0.00098 33.0 14.5 123 407-537 67-191 (218)
45 3q8t_A Beclin-1; autophagy, AT 82.2 9.2 0.00031 33.9 9.9 67 539-605 6-72 (96)
46 1sjj_A Actinin; 3-helix bundle 82.2 37 0.0013 38.9 17.4 193 402-610 420-630 (863)
47 3kbt_A Beta-I spectrin, spectr 81.4 36 0.0012 33.8 15.1 67 466-534 6-73 (326)
48 2fxo_A Myosin heavy chain, car 80.2 20 0.00068 32.9 11.8 35 571-605 89-123 (129)
49 1cun_A Protein (alpha spectrin 79.9 38 0.0013 31.4 17.9 162 467-651 3-175 (213)
50 2ocy_A RAB guanine nucleotide 79.8 16 0.00055 35.2 11.3 84 504-602 12-95 (154)
51 1u5p_A Spectrin alpha chain, b 78.3 44 0.0015 31.2 17.5 124 466-606 5-129 (216)
52 3fb2_A Spectrin alpha chain, b 77.7 49 0.0017 31.4 17.1 163 467-652 16-189 (218)
53 2v71_A Nuclear distribution pr 74.6 71 0.0024 31.7 17.1 89 465-563 25-114 (189)
54 2l7b_A Apolipoprotein E, APO-E 73.7 42 0.0014 35.2 13.4 93 397-490 33-133 (307)
55 1ic2_A Tropomyosin alpha chain 73.1 5.3 0.00018 34.0 5.4 72 463-534 5-77 (81)
56 3oja_A Leucine-rich immune mol 73.1 60 0.002 34.7 14.8 6 429-434 344-349 (487)
57 2ocy_A RAB guanine nucleotide 71.6 24 0.00083 34.0 10.1 15 436-450 14-28 (154)
58 3tnu_A Keratin, type I cytoske 70.0 7.9 0.00027 35.6 6.2 18 473-490 40-57 (131)
59 3tnu_B Keratin, type II cytosk 69.7 10 0.00035 34.7 6.9 16 474-489 39-54 (129)
60 3hnw_A Uncharacterized protein 68.2 12 0.00042 35.0 7.2 20 542-561 115-134 (138)
61 3mq9_A Bone marrow stromal ant 68.0 66 0.0022 34.2 13.7 61 429-490 361-423 (471)
62 3ol1_A Vimentin; structural ge 67.4 59 0.002 29.5 11.4 86 504-604 32-119 (119)
63 3u1c_A Tropomyosin alpha-1 cha 67.3 67 0.0023 28.4 13.3 84 513-603 10-96 (101)
64 3okq_A BUD site selection prot 67.0 10 0.00035 36.2 6.4 37 492-528 7-44 (141)
65 1s35_A Beta-I spectrin, spectr 66.7 83 0.0029 29.3 17.7 129 396-532 43-174 (214)
66 3lbx_B Beta-I spectrin, spectr 66.4 81 0.0028 29.3 12.6 124 394-525 45-170 (185)
67 1sjj_A Actinin; 3-helix bundle 65.5 1.1E+02 0.0039 34.9 15.9 73 466-539 372-445 (863)
68 2eqb_B RAB guanine nucleotide 64.7 74 0.0025 28.6 11.1 90 512-605 5-95 (97)
69 3bas_A Myosin heavy chain, str 64.5 70 0.0024 27.7 10.9 62 510-575 19-80 (89)
70 1ses_A Seryl-tRNA synthetase; 63.7 23 0.00079 38.4 9.3 11 612-622 113-123 (421)
71 2a01_A Apolipoprotein A-I; fou 63.3 1.1E+02 0.0037 30.6 13.5 75 472-560 67-148 (243)
72 3r2p_A Apolipoprotein A-I; amp 63.0 26 0.00088 33.6 8.5 88 398-489 9-107 (185)
73 2xv5_A Lamin-A/C; structural p 62.0 14 0.00048 31.5 5.8 48 394-448 6-53 (74)
74 1quu_A Human skeletal muscle a 61.2 1.2E+02 0.0042 29.3 15.8 136 467-610 17-153 (250)
75 3r2p_A Apolipoprotein A-I; amp 61.0 49 0.0017 31.7 10.1 24 467-490 107-130 (185)
76 2dq0_A Seryl-tRNA synthetase; 60.7 40 0.0014 37.0 10.5 13 611-623 118-130 (455)
77 2eqb_B RAB guanine nucleotide 59.6 29 0.001 31.2 7.6 60 543-602 4-63 (97)
78 3qne_A Seryl-tRNA synthetase, 59.3 29 0.001 38.6 9.3 10 611-620 120-129 (485)
79 3u1c_A Tropomyosin alpha-1 cha 59.0 19 0.00066 31.9 6.3 69 464-532 9-78 (101)
80 1hci_A Alpha-actinin 2; triple 58.1 1.8E+02 0.0063 30.4 18.1 86 466-552 133-219 (476)
81 1u5p_A Spectrin alpha chain, b 57.9 1.2E+02 0.0041 28.2 16.9 83 444-533 94-177 (216)
82 2b9c_A Striated-muscle alpha t 57.6 17 0.00058 34.5 6.1 123 405-553 1-124 (147)
83 2xnx_M M protein, M1-BC1; cell 57.4 41 0.0014 32.3 8.6 65 540-604 69-133 (146)
84 1wle_A Seryl-tRNA synthetase; 56.4 59 0.002 36.3 11.1 22 469-490 39-60 (501)
85 3okq_A BUD site selection prot 55.2 31 0.001 33.0 7.3 107 431-540 24-135 (141)
86 3ghg_A Fibrinogen alpha chain; 54.1 78 0.0027 35.9 11.4 88 383-490 38-129 (562)
87 1cun_A Protein (alpha spectrin 53.9 1.4E+02 0.0047 27.6 18.1 123 402-534 49-175 (213)
88 1m1j_B Fibrinogen beta chain; 53.3 1.7E+02 0.006 32.5 14.0 10 383-392 74-83 (464)
89 3hnw_A Uncharacterized protein 53.1 1.4E+02 0.0048 27.9 11.5 55 476-530 30-86 (138)
90 3u59_A Tropomyosin beta chain; 53.1 1.2E+02 0.004 26.6 13.4 56 542-604 42-97 (101)
91 1go4_E MAD1 (mitotic arrest de 52.7 72 0.0025 28.8 9.0 19 585-603 74-92 (100)
92 4fla_A Regulation of nuclear P 52.1 88 0.003 29.8 10.1 52 540-591 89-140 (152)
93 3ol1_A Vimentin; structural ge 51.7 71 0.0024 29.0 9.0 65 545-609 21-85 (119)
94 1ik9_A DNA repair protein XRCC 51.2 58 0.002 32.5 9.1 61 540-602 142-209 (213)
95 3kbt_A Beta-I spectrin, spectr 51.1 1.9E+02 0.0066 28.5 24.7 189 437-651 88-285 (326)
96 4etp_A Kinesin-like protein KA 50.4 27 0.00091 37.7 7.0 57 537-600 3-59 (403)
97 2lw1_A ABC transporter ATP-bin 50.3 75 0.0026 27.2 8.5 63 511-573 21-85 (89)
98 3edv_A Spectrin beta chain, br 50.0 2E+02 0.0069 28.4 17.7 129 398-535 157-289 (323)
99 2lem_A Apolipoprotein A-I; lip 49.6 64 0.0022 31.7 9.0 58 468-525 106-166 (216)
100 3u59_A Tropomyosin beta chain; 49.2 36 0.0012 29.9 6.5 69 464-532 9-78 (101)
101 1gs9_A Apolipoprotein E, APOE4 48.5 98 0.0034 29.6 9.9 28 397-424 25-52 (165)
102 3i00_A HIP-I, huntingtin-inter 47.8 53 0.0018 30.3 7.6 14 413-426 10-23 (120)
103 3lbx_B Beta-I spectrin, spectr 47.7 1.7E+02 0.006 27.0 16.2 125 468-609 8-133 (185)
104 3mtu_A Tropomyosin alpha-1 cha 47.7 45 0.0015 28.3 6.5 48 401-448 3-50 (75)
105 1m1j_B Fibrinogen beta chain; 47.6 92 0.0031 34.7 10.7 40 403-442 92-135 (464)
106 1ic2_A Tropomyosin alpha chain 47.6 1.3E+02 0.0044 25.4 9.8 65 510-578 11-75 (81)
107 1wt6_A Myotonin-protein kinase 47.5 37 0.0013 29.7 6.1 54 502-559 20-74 (81)
108 2dq3_A Seryl-tRNA synthetase; 47.3 35 0.0012 36.9 7.4 11 612-622 118-128 (425)
109 2l5g_B Putative uncharacterize 47.2 26 0.0009 27.3 4.5 37 500-536 3-40 (42)
110 3swk_A Vimentin; cytoskeleton, 46.9 53 0.0018 28.5 7.0 65 545-609 1-65 (86)
111 2fxo_A Myosin heavy chain, car 45.9 1.8E+02 0.006 26.6 14.2 39 561-599 72-110 (129)
112 3aco_A Pacsin2, protein kinase 45.7 2.7E+02 0.0091 28.6 17.4 88 510-607 155-245 (350)
113 1u4q_A Spectrin alpha chain, b 45.4 2.3E+02 0.0079 27.8 17.9 84 444-534 200-284 (322)
114 2v66_B Nuclear distribution pr 44.8 1.1E+02 0.0037 28.1 9.0 63 510-572 8-70 (111)
115 1uix_A RHO-associated kinase; 44.6 86 0.0029 26.8 7.7 28 565-592 39-66 (71)
116 3bas_A Myosin heavy chain, str 44.1 24 0.00082 30.6 4.4 36 499-534 42-78 (89)
117 4h22_A Leucine-rich repeat fli 43.7 1.1E+02 0.0037 27.9 8.7 33 538-570 24-56 (103)
118 3qh9_A Liprin-beta-2; coiled-c 43.1 21 0.00072 31.3 3.8 20 513-532 48-67 (81)
119 2a01_A Apolipoprotein A-I; fou 43.1 1.4E+02 0.0048 29.8 10.5 20 468-487 107-126 (243)
120 2l7b_A Apolipoprotein E, APO-E 42.9 2.2E+02 0.0075 29.8 12.3 24 467-490 132-155 (307)
121 2d1l_A Metastasis suppressor p 42.4 1.9E+02 0.0065 29.7 11.4 24 529-552 109-139 (253)
122 1deq_A Fibrinogen (alpha chain 42.4 1.7E+02 0.0059 31.9 11.5 44 439-490 117-160 (390)
123 1gk4_A Vimentin; intermediate 41.6 1.6E+02 0.0056 25.0 10.4 54 513-566 2-55 (84)
124 1m1j_C Fibrinogen gamma chain; 41.0 1.4E+02 0.0049 32.5 10.9 27 538-564 106-132 (409)
125 2efr_A General control protein 40.8 2.5E+02 0.0086 26.9 12.0 127 436-570 1-138 (155)
126 1x8y_A Lamin A/C; structural p 40.6 86 0.0029 27.0 7.3 20 515-534 6-25 (86)
127 3tnu_B Keratin, type II cytosk 40.5 2.1E+02 0.0072 25.9 10.8 43 513-562 51-93 (129)
128 2efk_A CDC42-interacting prote 39.8 2.8E+02 0.0097 27.2 12.9 8 692-699 261-268 (301)
129 2lem_A Apolipoprotein A-I; lip 39.3 65 0.0022 31.6 7.3 28 398-425 7-34 (216)
130 2i1j_A Moesin; FERM, coiled-co 39.0 17 0.00059 40.9 3.4 48 442-490 300-347 (575)
131 2w6b_A RHO guanine nucleotide 39.0 56 0.0019 26.8 5.4 24 540-563 6-29 (56)
132 2v4h_A NF-kappa-B essential mo 38.5 2.2E+02 0.0074 26.2 9.9 88 412-532 22-110 (110)
133 3edu_A Beta-I spectrin, spectr 38.4 2.6E+02 0.0088 26.3 17.3 164 468-652 5-177 (218)
134 2wt7_A Proto-oncogene protein 38.1 54 0.0018 26.7 5.4 35 541-575 27-61 (63)
135 4emc_A Monopolin complex subun 37.8 58 0.002 32.4 6.5 34 502-535 23-57 (190)
136 3lay_A Zinc resistance-associa 37.6 1.1E+02 0.0037 29.8 8.3 42 514-555 87-131 (175)
137 1ci6_A Transcription factor AT 37.3 54 0.0018 26.8 5.3 36 539-574 25-60 (63)
138 3u06_A Protein claret segregat 36.2 53 0.0018 35.6 6.6 57 541-604 7-63 (412)
139 1s1c_X RHO-associated, coiled- 35.7 1.3E+02 0.0043 25.8 7.4 28 565-592 39-66 (71)
140 1gk6_A Vimentin; intermediate 35.0 76 0.0026 25.6 5.8 45 397-448 4-48 (59)
141 3cvf_A Homer-3, homer protein 34.7 56 0.0019 28.4 5.2 15 428-442 6-20 (79)
142 2yy0_A C-MYC-binding protein; 34.3 48 0.0017 26.5 4.4 29 506-534 19-48 (53)
143 3tnu_A Keratin, type I cytoske 34.0 2.7E+02 0.0093 25.3 11.1 42 513-561 53-94 (131)
144 3s9g_A Protein hexim1; cyclin 33.4 1.1E+02 0.0038 27.8 7.0 57 501-561 32-89 (104)
145 3haj_A Human pacsin2 F-BAR; pa 33.0 5E+02 0.017 28.1 17.0 62 503-564 140-205 (486)
146 3qh9_A Liprin-beta-2; coiled-c 32.8 2E+02 0.0069 25.2 8.3 28 541-568 23-50 (81)
147 1f5n_A Interferon-induced guan 32.8 2E+02 0.0067 32.7 10.7 103 433-555 482-585 (592)
148 3l4q_C Phosphatidylinositol 3- 32.7 1.8E+02 0.0061 28.5 8.9 102 472-575 11-120 (170)
149 1nkp_B MAX protein, MYC proto- 32.7 1.7E+02 0.0059 24.5 7.9 24 457-480 5-28 (83)
150 3fse_A Two-domain protein cont 31.4 5E+02 0.017 27.6 13.1 44 670-714 316-359 (365)
151 1g8x_A Myosin II heavy chain f 31.0 7.8E+02 0.027 29.7 18.5 97 555-654 855-959 (1010)
152 1nfn_A Apolipoprotein E3; lipi 30.7 77 0.0026 30.8 6.1 24 467-490 124-147 (191)
153 3i00_A HIP-I, huntingtin-inter 30.3 2.6E+02 0.0089 25.7 9.2 41 544-605 40-80 (120)
154 1bf5_A Signal transducer and a 30.0 95 0.0032 35.5 7.4 43 512-554 59-109 (575)
155 2jee_A YIIU; FTSZ, septum, coi 30.0 1.9E+02 0.0065 25.3 7.7 17 539-555 50-66 (81)
156 2jee_A YIIU; FTSZ, septum, coi 29.6 2.2E+02 0.0075 24.9 8.0 65 452-527 12-77 (81)
157 4e61_A Protein BIM1; EB1-like 29.5 1.2E+02 0.0042 27.6 6.7 38 539-576 20-57 (106)
158 3lss_A Seryl-tRNA synthetase; 29.0 1.6E+02 0.0054 32.9 8.9 8 613-620 155-163 (484)
159 1t3j_A Mitofusin 1; coiled coi 28.8 1E+02 0.0036 27.6 6.1 45 396-440 32-76 (96)
160 1l8d_A DNA double-strand break 28.8 2.8E+02 0.0097 23.9 9.7 12 436-447 4-15 (112)
161 1x79_B RAB GTPase binding effe 28.5 2.9E+02 0.0099 25.4 9.1 59 545-603 7-65 (112)
162 1cxz_B Protein (PKN); protein- 28.5 1.6E+02 0.0055 25.9 7.1 60 549-608 23-85 (86)
163 3cl3_D NF-kappa-B essential mo 28.1 1.1E+02 0.0037 28.9 6.2 73 468-563 52-128 (130)
164 1gs9_A Apolipoprotein E, APOE4 28.1 3.8E+02 0.013 25.5 10.3 40 408-447 25-67 (165)
165 1x8y_A Lamin A/C; structural p 27.5 2.9E+02 0.01 23.6 9.0 47 433-484 33-82 (86)
166 2e7s_A RAB guanine nucleotide 27.3 1.9E+02 0.0064 27.4 7.8 97 396-492 28-124 (135)
167 2zuo_A MVP, major vault protei 27.3 8.3E+02 0.028 29.3 14.7 20 449-468 648-667 (861)
168 1u4q_A Spectrin alpha chain, b 27.3 4.5E+02 0.015 25.7 23.7 137 450-608 100-237 (322)
169 3ter_A Mammalian stromal inter 27.1 4.1E+02 0.014 25.2 11.3 102 472-573 7-126 (136)
170 1bg1_A Protein (transcription 27.0 55 0.0019 37.5 4.9 31 456-488 7-37 (596)
171 2dq0_A Seryl-tRNA synthetase; 26.9 68 0.0023 35.2 5.5 50 510-560 43-92 (455)
172 3q8t_A Beclin-1; autophagy, AT 26.7 3.3E+02 0.011 23.9 9.7 59 510-572 9-67 (96)
173 3abh_A Pacsin2, protein kinase 26.5 4.9E+02 0.017 25.9 18.0 88 510-607 155-245 (312)
174 3qne_A Seryl-tRNA synthetase, 26.4 82 0.0028 35.1 6.0 51 510-561 45-95 (485)
175 1gd2_E Transcription factor PA 26.0 94 0.0032 26.2 5.0 41 519-563 29-69 (70)
176 2a26_A Calcyclin-binding prote 25.9 84 0.0029 25.0 4.4 38 410-447 7-46 (50)
177 1deb_A APC protein, adenomatou 25.7 98 0.0034 25.1 4.7 32 540-571 6-37 (54)
178 3iv1_A Tumor susceptibility ge 25.5 2.2E+02 0.0077 24.6 7.3 18 463-480 17-34 (78)
179 3u06_A Protein claret segregat 25.2 1.6E+02 0.0056 31.8 8.0 17 592-608 44-60 (412)
180 1deq_A Fibrinogen (alpha chain 25.0 4.3E+02 0.015 28.9 11.0 74 510-583 65-152 (390)
181 1t2k_D Cyclic-AMP-dependent tr 24.9 1.5E+02 0.0053 23.6 5.9 15 543-557 42-56 (61)
182 1ysm_A Calcyclin-binding prote 24.4 82 0.0028 27.1 4.4 39 409-447 5-45 (77)
183 3lay_A Zinc resistance-associa 24.3 2.5E+02 0.0087 27.2 8.4 19 547-565 88-106 (175)
184 1ik9_A DNA repair protein XRCC 24.2 2.4E+02 0.0084 28.0 8.5 60 503-562 143-204 (213)
185 2p22_C Protein SRN2; endosome, 23.9 4.3E+02 0.015 25.9 10.0 85 510-602 67-151 (192)
186 1s94_A S-syntaxin; three helix 23.8 3.1E+02 0.011 25.6 8.8 14 591-604 138-151 (180)
187 2efl_A Formin-binding protein 23.8 5.2E+02 0.018 25.2 13.3 94 507-600 100-204 (305)
188 2no2_A HIP-I, huntingtin-inter 23.4 4E+02 0.014 23.9 13.7 53 550-602 43-101 (107)
189 4etp_A Kinesin-like protein KA 23.1 1.8E+02 0.0063 31.2 7.9 51 555-605 7-57 (403)
190 1wle_A Seryl-tRNA synthetase; 23.1 1.6E+02 0.0054 32.9 7.6 20 540-559 119-138 (501)
191 2xs1_A Programmed cell death 6 23.0 8.8E+02 0.03 27.7 17.8 200 395-602 377-642 (704)
192 3cve_A Homer protein homolog 1 23.0 2.2E+02 0.0076 24.3 6.7 56 416-483 2-58 (72)
193 4dnd_A Syntaxin-10, SYN10; str 22.8 3.4E+02 0.012 25.1 8.6 24 510-533 72-95 (130)
194 3edv_A Spectrin beta chain, br 22.8 5.5E+02 0.019 25.2 25.1 180 406-610 60-243 (323)
195 1m1j_C Fibrinogen gamma chain; 22.7 4.6E+02 0.016 28.6 11.0 32 543-574 83-114 (409)
196 2w83_C C-JUN-amino-terminal ki 22.6 98 0.0034 26.9 4.5 22 424-445 54-75 (77)
197 2avr_X Adhesion A; antiparalle 22.5 4.7E+02 0.016 24.3 11.7 55 513-569 42-96 (119)
198 1t2k_D Cyclic-AMP-dependent tr 22.5 1.2E+02 0.0043 24.2 4.9 34 541-574 26-59 (61)
199 1gqe_A Release factor 2, RF2; 22.0 5.8E+02 0.02 27.6 11.4 82 521-608 27-116 (365)
200 3kin_B Kinesin heavy chain; mo 21.7 86 0.0029 28.4 4.3 35 414-448 82-116 (117)
201 1zhc_A Hypothetical protein HP 21.4 2.8E+02 0.0097 23.3 7.2 50 515-569 20-69 (76)
202 2xnx_M M protein, M1-BC1; cell 21.4 98 0.0033 29.7 4.7 14 559-572 123-136 (146)
203 3d5a_X RF1, peptide chain rele 21.4 2.6E+02 0.0089 30.1 8.5 83 519-603 3-93 (354)
204 3pe0_A Plectin; cytoskeleton, 21.1 6.5E+02 0.022 25.4 12.4 126 398-531 53-183 (283)
205 1gmj_A ATPase inhibitor; coile 20.9 1.2E+02 0.0041 26.7 4.8 22 537-558 58-79 (84)
206 2j1d_G DAAM1, disheveled-assoc 20.9 8.4E+02 0.029 26.6 14.4 22 510-531 347-368 (483)
207 4dyl_A Tyrosine-protein kinase 20.8 6.7E+02 0.023 26.5 11.6 99 507-605 96-216 (406)
208 1wt6_A Myotonin-protein kinase 20.8 2.2E+02 0.0075 25.0 6.3 15 510-524 57-71 (81)
209 1cii_A Colicin IA; bacteriocin 20.6 8.6E+02 0.029 27.5 12.4 81 505-600 348-429 (602)
210 2b5u_A Colicin E3; high resolu 20.5 9.8E+02 0.033 27.2 16.7 79 513-594 357-449 (551)
211 2zqm_A Prefoldin beta subunit 20.2 3.1E+02 0.01 23.6 7.4 88 463-564 19-111 (117)
No 1
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.91 E-value=3.5e-25 Score=199.18 Aligned_cols=106 Identities=26% Similarity=0.376 Sum_probs=93.5
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
+.|+||++....+..|+++||+|.|+|. ..|.|.||||||.+||..|++.||...+|+||+|.+++ ++++|
T Consensus 4 l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ 74 (115)
T 3lui_A 4 MHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAE 74 (115)
T ss_dssp -CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHH
T ss_pred EEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHH
Confidence 4799999998876667789999999982 48999999999999999999999998899999999885 68899
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
||+||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 75 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 109 (115)
T 3lui_A 75 VEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCH
Confidence 99999999999999999999999999999998764
No 2
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=201.78 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=100.0
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC----CC
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR----MK 123 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg----~~ 123 (724)
+.|.|..+....+ +.++||+|.|.|.+..+.+....|.|.||||||.+||..|++.||...+||||+|.+++ ++
T Consensus 9 l~i~V~dp~~~~~--g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ 86 (138)
T 3iq2_A 9 LFITVDEPESHVT--TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERF 86 (138)
T ss_dssp CEEEEEEEEEEEC--SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGG
T ss_pred EEEEECCCEEecC--CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccC
Confidence 4677777766543 56889999999987766666789999999999999999999999999999999998764 45
Q ss_pred CHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhhhh
Q 004913 124 SRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARS 166 (724)
Q Consensus 124 s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~aRs 166 (724)
+++|||+||.+||.||++|+.||.|++|+.|+.||+.+...++
T Consensus 87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~~~ 129 (138)
T 3iq2_A 87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELS 129 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC--
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCCcc
Confidence 8999999999999999999999999999999999999877655
No 3
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=195.61 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=97.8
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCccc-------
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLL------- 120 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~f------- 120 (724)
+.|.|..+....+ +.++||+|.|+|.+..+......|.|.||||||.+||+.|++. |...+||||+|.++
T Consensus 11 l~i~V~dp~~~~~--g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~ 87 (146)
T 2csk_A 11 LEIDIFNPQTVGV--GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRG 87 (146)
T ss_dssp CEEEEEEEEEESS--SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCC
T ss_pred EEEEEcCceEecC--CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccccc
Confidence 4566666665443 4688999999997665555567999999999999999999876 77889999999876
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchhh
Q 004913 121 --RMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAA 164 (724)
Q Consensus 121 --g~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~a 164 (724)
++++++|||+||.+||.||++|+.||.|++|+.|+.||+.+...
T Consensus 88 ~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 133 (146)
T 2csk_A 88 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAID 133 (146)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchh
Confidence 56789999999999999999999999999999999999988543
No 4
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-24 Score=193.61 Aligned_cols=112 Identities=29% Similarity=0.444 Sum_probs=97.5
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCC--CCCCCCCCCCcccCC---
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFP--KKNIPPAPPKGLLRM--- 122 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP--~~~LPpLPPKk~fg~--- 122 (724)
+.|+|+++....+ +.++|++|.|+|.+..+.+....|.|.||||||.+||+.|+..|| +..+||||+|++++.
T Consensus 4 l~v~V~~~~~~~~--g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~ 81 (128)
T 2i4k_A 4 LTVGITDPEKIGD--GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81 (128)
T ss_dssp CCCCBCCCCBCCC--SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred EEEEECCceEecC--CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence 4678888876543 467899999999766555556899999999999999999999997 478999999987763
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcc
Q 004913 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161 (724)
Q Consensus 123 -------~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElE 161 (724)
++++|||+||.+||.||++|+.||.|++|+.|+.||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 378999999999999999999999999999999999875
No 5
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.89 E-value=7.4e-23 Score=188.71 Aligned_cols=125 Identities=23% Similarity=0.318 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEE
Q 004913 10 HRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVL 89 (724)
Q Consensus 10 ~r~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~ 89 (724)
|.|--.|+..+|-+.+.... ..|+||++...... .+++|++|.|+|.+. +..|.|.
T Consensus 3 ~~~~~ssgvd~~~en~~~~~------------------~~V~Ip~~~~~~~~-~~k~y~vY~I~v~~~-----~~~w~V~ 58 (129)
T 4az9_A 3 HHHHHSSGVDLGTENLYFQS------------------MEVYIPSFRYEESD-LERGYTVFKIEVLMN-----GRKHFVE 58 (129)
T ss_dssp -----------CCTTCCCCC------------------CEEEEEEEEEECCT-TSCCEEEEEEEEEET-----TEEEEEE
T ss_pred ccccccCcccccccccccce------------------eEEEECcEEEEecC-CCCCEEEEEEEEEEC-----CEEEEEE
Confidence 44545556667766655433 48999999876543 457899999999542 3689999
Q ss_pred ccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 90 RRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 90 RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
||||||.+||..|++.|| +|++|+|++ ++++++|||+||.+||.||+.|+.+|.+. ++.|.+||+++..
T Consensus 59 RRYsdF~~L~~~L~~~~~---~p~lP~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~ 127 (129)
T 4az9_A 59 KRYSEFHALHKKLKKCIK---TPEIPSKHV-RNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRHL 127 (129)
T ss_dssp EEHHHHHHHHHHHTTTSC---CCCCCCSCC-SCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC---
T ss_pred eeHHHHHHHHHHHHHhCC---CCCCCcccc-cCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCCC
Confidence 999999999999999887 688888875 56789999999999999999999999875 8899999998753
No 6
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.88 E-value=5.4e-23 Score=195.49 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=99.1
Q ss_pred EEEEecceEEcc--CCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHC-----CCCCCCCCCCCccc
Q 004913 48 YCVTIPSWVVLP--KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAF-----PKKNIPPAPPKGLL 120 (724)
Q Consensus 48 y~VsIPS~~~v~--~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~f-----P~~~LPpLPPKk~f 120 (724)
+.|.|..+.... ...+.++||+|.|+|.+..+.+....|.|.||||||.+||..|++.| |+..+|+||+|+++
T Consensus 36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~ 115 (162)
T 1ocs_A 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL 115 (162)
T ss_dssp EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCS
T ss_pred EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCccc
Confidence 566666665541 11367899999999987766666689999999999999999999999 89999999999986
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCCCC-CHHHhhccCcch
Q 004913 121 -RMKSRALLEERRCSLEEWMTKLLSDIDLSR-SVSVASFLELEA 162 (724)
Q Consensus 121 -g~~s~eFLEERR~gLEkYLqrLLshP~Ls~-S~~L~sFLElEa 162 (724)
++++++|||+||.+||.||++|+.||.|++ |+.|+.||+.+.
T Consensus 116 ~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 116 SNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 467899999999999999999999999998 999999998763
No 7
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.88 E-value=2.3e-23 Score=191.68 Aligned_cols=109 Identities=25% Similarity=0.279 Sum_probs=93.4
Q ss_pred EEEecceEEcc-CCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 49 CVTIPSWVVLP-KSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 49 ~VsIPS~~~v~-~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
+|.||++.... .....++|++|.|+|... ...|.|.||||||.+||..|++.||. .+|+||||+++++++++|
T Consensus 17 ~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g~~~~~~ 90 (130)
T 3p0c_A 17 NLYFQSMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIGKNSRSL 90 (130)
T ss_dssp CCCEECCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCSCCCSCS
T ss_pred eeEeeeeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccccCCHHH
Confidence 56677765422 222457899999999542 46999999999999999999999985 478999999999889999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 128 LEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
||+||.+||.||++|+.||.+++|+.|+.||+.+.+
T Consensus 91 ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 126 (130)
T 3p0c_A 91 VEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence 999999999999999999999999999999988754
No 8
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.88 E-value=5.5e-23 Score=193.54 Aligned_cols=108 Identities=27% Similarity=0.455 Sum_probs=96.6
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC-CCCHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR-MKSRA 126 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg-~~s~e 126 (724)
..|+||++....+ +++.|++|.|+|... ...|.|.||||||.+||..|++.||...+ |||+|++++ +++++
T Consensus 8 ~~v~I~~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~~~~~~ 79 (154)
T 1xte_A 8 PSVSIPSSDEHRE--KKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPD 79 (154)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSCTTCHH
T ss_pred CEEEECCcEEEec--CCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCCCCCHH
Confidence 4899999987654 467899999999642 36899999999999999999999998654 599999988 78999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcchh
Q 004913 127 LLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAA 163 (724)
Q Consensus 127 FLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa~ 163 (724)
|||+||.+||.||+.|+.||.+++|+.|+.||+.+..
T Consensus 80 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 116 (154)
T 1xte_A 80 FIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP 116 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCC
Confidence 9999999999999999999999999999999988754
No 9
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.88 E-value=1.3e-23 Score=221.44 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=98.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEcc
Q 004913 12 HDGTSPLPLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRR 91 (724)
Q Consensus 12 ~d~~s~lplg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RR 91 (724)
|..+.+ +.|+.|.||+.+. .|.|..+...+...|.++||+|.|.+. +..|.|.||
T Consensus 3 ~~~~~~-~~~~~w~~~~~~~-----------------~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RR 57 (366)
T 3dyt_A 3 IPIIVG-DYGPMWVYPTSTF-----------------DCVVADPRKGSKMYGLKSYIEYQLTPT-------NTNRSVNHR 57 (366)
T ss_dssp EEEEEE-TTEEEECCCSSCC-----------------CEEEECGGGSSSCCCCCSSCEEEEEET-------TCSCCEEEE
T ss_pred eEEEeC-CCCCcccCCCCCe-----------------EEEEcCceeecCCCCCcCeEEEEEEEe-------cCcEEEEee
Confidence 334444 7899999999865 566666665443346679999999983 248999999
Q ss_pred chhHHHHHHHHHHHCCC-CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 92 FNNFLKLFTDLKKAFPK-KNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 92 YSDF~~Lh~~Lkk~fP~-~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
||||.|||..|...||. +.+||||||.++++++++||++||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 58 YsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 58 YKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCCCC-----------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc
Confidence 99999999999999999 999999999999988999999999999999999999999999999999999863
No 10
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=222.16 Aligned_cols=120 Identities=22% Similarity=0.359 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHH
Q 004913 19 PLGMDWSPAPRKWNGRDTVWPHDPRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKL 98 (724)
Q Consensus 19 plg~dwsppp~~~~g~dtvwphd~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~L 98 (724)
+.|+.|.|+|.++ .|.|.++....+..|.++||+|.|.+. ...|.|.||||||.||
T Consensus 30 ~~~~~w~~~~~~~-----------------~i~V~dp~k~~~~~g~~~y~~Y~I~~~-------~~~~~V~RRYsdF~~L 85 (386)
T 4akv_A 30 PRGPQWKANPHPF-----------------ACSVEDPTKQTKFKGIKSYISYKLTPT-------HAASPVYRRYKHFDWL 85 (386)
T ss_dssp TTSSEECCCSSCC-----------------CEEEECC------------CCEEEEET-------TSSSCEEECHHHHHHH
T ss_pred CCCceeecCCCCe-----------------EEEEcCceEecCCCCCcCeEEEEEEEE-------eCCeEEEcCHHHHHHH
Confidence 4555677766644 566667666553346679999999983 2479999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 99 FTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 99 h~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
|..|...||.+.+||||||.++++++++||++||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 86 ~~~L~~~~p~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 86 YNRLLHKFTVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp HHHHHHHCSSSCCCCCCCCC------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHhCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence 9999999999999999999999988999999999999999999999999999999999999863
No 11
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=184.99 Aligned_cols=110 Identities=24% Similarity=0.369 Sum_probs=95.0
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHH
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRAL 127 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eF 127 (724)
..|+||++....+ ++++|++|.|+|.+. ...|.|.||||||.+||..|++.||...+|+||||+++++++++|
T Consensus 6 i~VsIp~~~~~~~--~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ 78 (134)
T 2v14_A 6 IKISIPRYVLCGQ--GKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERV 78 (134)
T ss_dssp EEEEEEEEEEESS--TTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHH
T ss_pred EEEEECcEEEEec--CCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHH
Confidence 5899999998754 568999999999643 369999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC-CCCCHHHhh--ccCcchhh
Q 004913 128 LEERRCSLEEWMTKLLSDID-LSRSVSVAS--FLELEAAA 164 (724)
Q Consensus 128 LEERR~gLEkYLqrLLshP~-Ls~S~~L~s--FLElEa~a 164 (724)
||+||.+||.||+.|+.||. +++|+.+.. +|......
T Consensus 79 ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l~~~~~~~~k~~ 118 (134)
T 2v14_A 79 IAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKHT 118 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSTTCTTSTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhhcCCHHHHccccCCccHHH
Confidence 99999999999999999997 888875432 35555433
No 12
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.87 E-value=1.3e-22 Score=182.52 Aligned_cols=99 Identities=24% Similarity=0.417 Sum_probs=89.2
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCC-CCCCCccc------
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIP-PAPPKGLL------ 120 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LP-pLPPKk~f------ 120 (724)
+.|+||++.. .++|++|.|+| ..|.|.||||||.+||+.|++.|| ..+| +||+|.++
T Consensus 6 ~~v~I~~~~~------~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~ 69 (117)
T 1kmd_A 6 LRIKVDDVKI------NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ 69 (117)
T ss_dssp CCCEEEEEEE------CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred EEEEECCcee------cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence 4789999986 36799999988 389999999999999999999999 5789 99999875
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcccCC---CCCHHHhhccCcch
Q 004913 121 -RMKSRALLEERRCSLEEWMTKLLSDIDL---SRSVSVASFLELEA 162 (724)
Q Consensus 121 -g~~s~eFLEERR~gLEkYLqrLLshP~L---s~S~~L~sFLElEa 162 (724)
++++++|||+||.+||.||+.|+.||.+ ++|+.|+.||+.+.
T Consensus 70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 5788999999999999999999999965 78999999999874
No 13
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.85 E-value=2.2e-21 Score=179.42 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=94.9
Q ss_pred CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------CCCCCCCC
Q 004913 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------KNIPPAPP 116 (724)
Q Consensus 45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------~~LPpLPP 116 (724)
+..+.|+|+++.... +...|++|.|.|...+ ...|.|+||||||.+||..|++.||. ..+|+||+
T Consensus 18 ~~~i~v~I~~~e~~~---~~~~~~vY~I~v~~~~----~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~ 90 (143)
T 1h6h_A 18 DVAISANIADIEEKR---GFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPA 90 (143)
T ss_dssp TCEEEEEEEEEEEEC---SSSCEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCC
T ss_pred CCeEEEEEcCccccC---CCCCeEEEEEEEEEcC----CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCC
Confidence 345789999986532 2357999999996432 36999999999999999999999993 36899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (724)
Q Consensus 117 Kk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa 162 (724)
|+++++ +++|||+||.+||.||+.|+.+|. |++|+.|..||+...
T Consensus 91 K~~~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~ 136 (143)
T 1h6h_A 91 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP 136 (143)
T ss_dssp CCCSSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred CcccCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCc
Confidence 998887 889999999999999999999997 999999999998764
No 14
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.84 E-value=5e-21 Score=183.42 Aligned_cols=112 Identities=24% Similarity=0.271 Sum_probs=95.8
Q ss_pred CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHH--HCCCCCCCCCCCCcccC-
Q 004913 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKK--AFPKKNIPPAPPKGLLR- 121 (724)
Q Consensus 45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk--~fP~~~LPpLPPKk~fg- 121 (724)
.-.+.|.|..+.... .||+|.|++.+..|.+....|.|.||||||.|||..|.. .||++.+||||+|.+++
T Consensus 9 ~~~l~i~V~dp~~~~------~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~ 82 (161)
T 3hpc_X 9 DPSLQIDIPDALSER------DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDG 82 (161)
T ss_dssp SCSEEEEEEEEEEET------TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHH
T ss_pred CCeEEEEECCCeEec------CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccc
Confidence 334788888887642 299999999888887778899999999999999999998 89999999999998763
Q ss_pred -------------C------------CCHHHHHHHH---HHHHHHHHHHhcccCCCCCHHHhhccCcch
Q 004913 122 -------------M------------KSRALLEERR---CSLEEWMTKLLSDIDLSRSVSVASFLELEA 162 (724)
Q Consensus 122 -------------~------------~s~eFLEERR---~gLEkYLqrLLshP~Ls~S~~L~sFLElEa 162 (724)
+ ++++|||+|| .+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 83 ~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~ 151 (161)
T 3hpc_X 83 PREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ 151 (161)
T ss_dssp HHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS
T ss_pred hhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc
Confidence 1 2468999754 569999999999999999999999998874
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.83 E-value=1.6e-20 Score=170.43 Aligned_cols=112 Identities=19% Similarity=0.310 Sum_probs=94.5
Q ss_pred CCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 004913 44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK 123 (724)
Q Consensus 44 tGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~ 123 (724)
.|....|.|+++..... +.+.|+ |.|.|..... ...|.|+||||||.+||.+|++.||...+|+||+|++++++
T Consensus 2 ~~~i~~v~V~~~ek~~~--~~k~y~-Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~ 75 (121)
T 2ar5_A 2 DGRIKEVSVFTYHKKYN--PDKHYI-YVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT 75 (121)
T ss_dssp CSSEEEEEEEEEECCCS--SSSCCE-EEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSS
T ss_pred CCeEEEEEECcEEEEec--CCCcEE-EEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCcc
Confidence 35566899999986543 344454 9999965432 15899999999999999999999999899999999988765
Q ss_pred -CHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcc
Q 004913 124 -SRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELE 161 (724)
Q Consensus 124 -s~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElE 161 (724)
+++|+|+||.+||.||+.|++. |.|++|+.|..||+..
T Consensus 76 ~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~ 115 (121)
T 2ar5_A 76 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGS 115 (121)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCc
Confidence 5799999999999999999986 6999999999999865
No 16
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.83 E-value=9.5e-21 Score=174.46 Aligned_cols=92 Identities=26% Similarity=0.346 Sum_probs=82.0
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKL 142 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~s~eFLEERR~gLEkYLqrL 142 (724)
++++|++|.|.|.+. ...|.|.||||||.+||+.|++.|| +|+||+|.++ +++++|||+||.+||.||+.|
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~-~~~~~~ie~Rr~~Le~yL~~l 98 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP-NWRTRGLEQRRQGLEAYIQGI 98 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC-CSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC-CCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999653 3689999999999999999999986 7999999965 567899999999999999999
Q ss_pred hcccCCCCCHHHhhccCcchhh
Q 004913 143 LSDIDLSRSVSVASFLELEAAA 164 (724)
Q Consensus 143 LshP~Ls~S~~L~sFLElEa~a 164 (724)
+.+|.+. ++.|..||+.+.+.
T Consensus 99 l~~p~~~-s~~l~~FL~~~~~~ 119 (128)
T 2ett_A 99 LYLNQEV-PKELLEFLRLRHFP 119 (128)
T ss_dssp HHHSSSS-CHHHHHHHTCTTCC
T ss_pred HhCchhc-CHHHHHhcCCccCC
Confidence 9999887 79999999988643
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.81 E-value=1.7e-19 Score=167.22 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=92.9
Q ss_pred CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC---------CCCCCC
Q 004913 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK---------NIPPAP 115 (724)
Q Consensus 45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~---------~LPpLP 115 (724)
|....|.|+++..... ...|++|.|.|.... ...|.|+||||||.+||..|+..||.. .+|+||
T Consensus 4 ~~i~~v~V~~~ek~~~---~~~~~~Y~I~V~~~~----~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP 76 (141)
T 1kq6_A 4 TFIRHIALLGFEKRFV---PSQHYVYMFLVKWQD----LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLP 76 (141)
T ss_dssp SCEEEEEEEEEEEECS---SSCEEEEEEEEEETT----CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCC
T ss_pred ceEEEEEEccEEEecC---CCCeEEEEEEEEEcC----CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCC
Confidence 4556889998876433 245778999996543 358999999999999999999999964 689999
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcchh
Q 004913 116 PKGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEAA 163 (724)
Q Consensus 116 PKk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa~ 163 (724)
+|.++++ .+|+++||.+||.||+.|+.+|. +++|+.|..||+....
T Consensus 77 ~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~ 123 (141)
T 1kq6_A 77 APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 123 (141)
T ss_dssp CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcc
Confidence 9998774 79999999999999999999874 8999999999987653
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.80 E-value=4.4e-20 Score=171.13 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=88.3
Q ss_pred CCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccCCC
Q 004913 44 TGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMK 123 (724)
Q Consensus 44 tGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg~~ 123 (724)
.|....|.|+++..... + ..|++|.|+|..... ...|.|.||||||.+||.+|++.||...+|+||+|++++++
T Consensus 17 ~~~i~~v~I~~~ek~~~--~-~k~~~Y~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~ 90 (140)
T 2iwl_X 17 DGRIKEVSVFTYHKKYN--P-DKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRT 90 (140)
T ss_dssp HCCEEEEEEEEEEECCS--S-SSCEEEEEEEEETTC---SSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-------
T ss_pred CCeeEEEEECcEEEEec--C-CCeEEEEEEEEECCC---ceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCcc
Confidence 46667899999986543 2 345669999965432 25899999999999999999999999899999999988754
Q ss_pred -CHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHhhccCcc
Q 004913 124 -SRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLELE 161 (724)
Q Consensus 124 -s~eFLEERR~gLEkYLqrLLs-hP~Ls~S~~L~sFLElE 161 (724)
+.+|+++||.+||.||+.|++ +|.+++|+.|..||...
T Consensus 91 ~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 91 HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 568999999999999999998 67999999999999864
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.74 E-value=8.1e-18 Score=160.03 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=87.4
Q ss_pred EEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC--------------CCCCC
Q 004913 48 YCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK--------------KNIPP 113 (724)
Q Consensus 48 y~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~--------------~~LPp 113 (724)
..|+||++... .+ +.+|.|.|...+ ...|.|+||||||.+||..|+..||. ..+|+
T Consensus 19 ~~~sI~~~~~~-----~~-~y~Y~I~V~~~d----~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~ 88 (156)
T 2v6v_A 19 VKASVESFGLE-----DE-KYWFLVCCELSN----GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPY 88 (156)
T ss_dssp EEEEEEEEEEE-----TT-EEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCC
T ss_pred eEEEEeeEEEE-----CC-EEEEEEEEEEcC----CCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCC
Confidence 57999999863 12 455999997543 36999999999999999999999984 45899
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHhhccCcch
Q 004913 114 APPKGLLRMKSRALLEERRCSLEEWMTKLLSD-IDLSRSVSVASFLELEA 162 (724)
Q Consensus 114 LPPKk~fg~~s~eFLEERR~gLEkYLqrLLsh-P~Ls~S~~L~sFLElEa 162 (724)
||+|.+++ +++|+++||.+|+.||+.|+.. +.+++|+.|+.||+...
T Consensus 89 LP~K~~~~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 136 (156)
T 2v6v_A 89 IPGPVPYV--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLN 136 (156)
T ss_dssp CCCCCSSC--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCS
T ss_pred CCCCcccC--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCC
Confidence 99998763 5799999999999999999984 56999999999998764
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=155.34 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=83.6
Q ss_pred CCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCC---------CCCCCCCCCcccCC-CCHHHHHHHH
Q 004913 63 DSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPK---------KNIPPAPPKGLLRM-KSRALLEERR 132 (724)
Q Consensus 63 ~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~---------~~LPpLPPKk~fg~-~s~eFLEERR 132 (724)
+++.|++|.|.|...+ ...|.|+||||||.+||.+|+..||. ..+|+||+|.++++ .+++++++||
T Consensus 22 ~~~~y~~Y~I~V~~~d----~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~~~~~e~R~ 97 (149)
T 2l73_A 22 QIKRLQTFAFSVRWSD----GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARL 97 (149)
T ss_dssp CCSSSCEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCHHHHHHHHH
T ss_pred CCCceEEEEEEEEEeC----CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccchHHHHHHH
Confidence 4578999999996543 36899999999999999999999982 35899999988875 3579999999
Q ss_pred HHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913 133 CSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (724)
Q Consensus 133 ~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa 162 (724)
.+|+.||+.|++.|. +++|+.|+.||....
T Consensus 98 ~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 128 (149)
T 2l73_A 98 QLLETYSRRLLATAERVARSPTITGFFAPQP 128 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred HHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence 999999999998775 999999999998764
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=152.33 Aligned_cols=106 Identities=23% Similarity=0.246 Sum_probs=89.3
Q ss_pred CCCCceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCCCCCCCCCCcccC
Q 004913 42 PRTGWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLR 121 (724)
Q Consensus 42 ~rtGwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~~LPpLPPKk~fg 121 (724)
.+++..-.++|.+|... ....|.|+|...+ ...|.|.|||++|..||.+|++.||...+|+||+|++++
T Consensus 20 ~~~~~i~~~~v~~~~k~-------~~~~Yvi~V~~sd----~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~ 88 (127)
T 2wwe_A 20 FQSMSIERATILGFSKK-------SSNLYLIQVTHSN----NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP 88 (127)
T ss_dssp SCSSSEEEEEEEEEETT-------EEEEEEEEEEETT----SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH
T ss_pred ecCCcEEEEEEEEEEec-------ccEEEEEEEEEeC----CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC
Confidence 45666678999999631 3456999996554 369999999999999999999999999999999999776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHhhccCc
Q 004913 122 MKSRALLEERRCSLEEWMTKLLS-DIDLSRSVSVASFLEL 160 (724)
Q Consensus 122 ~~s~eFLEERR~gLEkYLqrLLs-hP~Ls~S~~L~sFLEl 160 (724)
... .-++ ||++||+||+.|++ +|.|++|+.|.+||..
T Consensus 89 ~t~-~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 89 FTN-SDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHH-CHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred cCH-HHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 533 3344 99999999999999 8999999999999964
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=152.61 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=92.6
Q ss_pred CceEEEEecceEEccCCCCCCCeEEEEEEEeeecCCCCCcceEEEccchhHHHHHHHHHHHCCCC--------CCCCCCC
Q 004913 45 GWSYCVTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK--------NIPPAPP 116 (724)
Q Consensus 45 GwSy~VsIPS~~~v~~s~~sk~yVvY~IqV~iqspegi~~~w~V~RRYSDF~~Lh~~Lkk~fP~~--------~LPpLPP 116 (724)
+....|+|+++...... ..|++|.|.|.... ...|.|+|||+||..||..|+..||.. .+|+||+
T Consensus 21 ~~~~~v~I~~~~~~~~~---~~~~~Y~i~v~~~~----~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~ 93 (341)
T 2dyb_A 21 DVAISANIADIEEKRGF---TSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPA 93 (341)
T ss_dssp TSEEEEEEEEEEEEESS---SEEEEEEEEEEETT----SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCC
T ss_pred CCcEEEEECCeEEecCC---CcEEEEEEEEEEcC----CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCC
Confidence 34568999999764332 35889999996543 368999999999999999999999943 4899999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhcccC-CCCCHHHhhccCcch
Q 004913 117 KGLLRMKSRALLEERRCSLEEWMTKLLSDID-LSRSVSVASFLELEA 162 (724)
Q Consensus 117 Kk~fg~~s~eFLEERR~gLEkYLqrLLshP~-Ls~S~~L~sFLElEa 162 (724)
|.++++ ..+|+++|+..|+.||++|+.+|. +++|+.|..||....
T Consensus 94 k~~~~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~ 139 (341)
T 2dyb_A 94 KVYVGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP 139 (341)
T ss_dssp CCCCSC-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCH
T ss_pred ccccCc-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Confidence 998876 568999999999999999999987 999999999998654
No 23
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.64 E-value=0.016 Score=54.50 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004913 476 LRQKSLEME 484 (724)
Q Consensus 476 lr~k~~e~E 484 (724)
++.+..+.+
T Consensus 151 ~~~~~~~~~ 159 (284)
T 1c1g_A 151 AKHIAEDAD 159 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 24
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.53 E-value=0.03 Score=52.66 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ 449 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~ 449 (724)
|++=|.+|+..+..+....++|-..|....+-..-+...+..++.++.....
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED 55 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655554444455555555555544433
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.19 E-value=0.00047 Score=82.71 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=15.0
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
+..++=..+++..+..+++..+...+......+..+..+..+.+ +.++++..+++++.+++++.+++
T Consensus 915 l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le 982 (1184)
T 1i84_S 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666665555554444444444444444444 44455555555555554444443
No 26
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.18 E-value=0.00081 Score=80.75 Aligned_cols=19 Identities=21% Similarity=0.760 Sum_probs=11.5
Q ss_pred CCCCCCCcCCCCCCCCceE
Q 004913 30 KWNGRDTVWPHDPRTGWSY 48 (724)
Q Consensus 30 ~~~g~dtvwphd~rtGwSy 48 (724)
+|++...||-+|+..||.-
T Consensus 27 ~~~~~~~vw~~~~~~~~~~ 45 (1184)
T 1i84_S 27 DWSAKKLVWVPSEKHGFEA 45 (1184)
T ss_dssp HTTCTTEEEECCTTTSSEE
T ss_pred CcccCCeEEEECCCCCeEE
Confidence 3666666666666666643
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.08 E-value=0.12 Score=62.26 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=33.8
Q ss_pred hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
+..+.. +.+|++..+++++.+.++++++|.+..--..-|-..|.+|......|+|++++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 666777777777777777777766543333344455555555555444444443
No 28
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.78 E-value=0.49 Score=47.70 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=95.8
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913 425 QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST 504 (724)
Q Consensus 425 qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~ 504 (724)
+-...+.-|-..|.+|+.+++..+..-. .++..+-+=+..+.....++++++.+.-.++.++.+-.+.+-+ ..
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~-~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~-----~a- 94 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAIL-NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSEREL-----RS- 94 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHH-----HH-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-----HH-
Confidence 3333444455667777777776655443 3333444435557778889999999999999888654322221 22
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 004913 505 VKDKNVLQELDATKEQLENLSKRYEELEAKS---KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581 (724)
Q Consensus 505 ~~e~~~~qel~~~~~~~e~l~k~~~elEaks---kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~ 581 (724)
+..|++..+.....|.++.-++..+. ++.++-+-.++..++....++++++...+.+...-...|.++|+
T Consensus 95 -----L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~-- 167 (256)
T 3na7_A 95 -----LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKE-- 167 (256)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444444444444433333332 34555666777777888888888888877776655555555543
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 004913 582 NHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 582 e~~~~ar~kllhec~iL~~rL 602 (724)
+.+...-..||..-.-+|.+.
T Consensus 168 ~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhC
Confidence 233333446666666666543
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.50 E-value=0.008 Score=65.57 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+...+.++...++.+..++++++.+.-+++.++|+.+.+.+++.+..+.-..++-.|...|.+.+++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445555556666666666666666777777777777766666555555555555555555443
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.74 E-value=0.29 Score=49.36 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHH
Q 004913 399 SRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKET 454 (724)
Q Consensus 399 ~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~ 454 (724)
...+..+...+.....+...|-.++....+--+-+...++.+|.+++..+.+-+..
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556666666655666667777777777777776655543
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.73 E-value=0.4 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=14.8
Q ss_pred EEecccchhhHhHHHHHHHHHHhh
Q 004913 388 LVIPLDQRHKLSRVLLTMERRLVT 411 (724)
Q Consensus 388 ~vlp~d~r~kl~rvl~t~~~rl~~ 411 (724)
+..+......+.|++..+......
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~ 414 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVV 414 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHhhHHHHh
Confidence 445556666777777766654443
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.15 E-value=0.46 Score=50.98 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHh
Q 004913 471 WDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLR 550 (724)
Q Consensus 471 wdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR 550 (724)
..++..|++..+++..++..... ...+.+..+...++.+....++.|.+.++.+....+.+.+.|...+|++.||
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (487)
T 3oja_A 374 EQVSNGRRAHAELDGTLQQAVGQ-----IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-----SCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHhhch-----hhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHH
Confidence 34566777777777776655221 1112333333455677788888888888888888889999999999999999
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 551 SSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 551 ~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
..+..+++++.++.++-.+....++.=.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 449 EENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 9999999999998887777766666544
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.87 E-value=3.4 Score=55.15 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHM 584 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~ 584 (724)
+-.+++.|-....+||.+.+.++.||..++.=+..=+.|.++|
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666676666666655544444443333
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.74 E-value=0.35 Score=58.19 Aligned_cols=120 Identities=15% Similarity=0.193 Sum_probs=51.6
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHh---hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhh
Q 004913 428 TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSE---RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEEST 504 (724)
Q Consensus 428 avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~E---rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~ 504 (724)
+.+.-|..||.+|+..|+.....+++-.++.-..| -..+..|+=+++++.....|.+.. +....+.
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~-----------~~~v~~L 989 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA-----------TNRVLSL 989 (1080)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 34666778888888777665544443222211111 112334444555555544443321 1233555
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHH
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQ 558 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~ 558 (724)
..|.+ +.+++..+.++.+.|.+++..+...-...++-|.+|...||.+..+|..
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 6666666666666666666555555556677799999999998888873
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.65 E-value=2.6 Score=41.24 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=82.2
Q ss_pred HhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHH
Q 004913 434 MTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQ 512 (724)
Q Consensus 434 ~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~q 512 (724)
..||.-||-.|+.+..++|---+.|+=- |--.|. ++...+..|.++...++--...+..+..+..+.. |.-
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rl-kK~~tE-------l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRL-RKSHTE-------MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999888888777777666 666666 4444444444444433322222333333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLL 592 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kll 592 (724)
+|+.-|...-..++.+.+++. -+..|--|++.+|.....+.-|..++. |+|..-||++.-. --.|.
T Consensus 77 ~L~qEr~~r~q~se~~~elq~----ri~~L~~El~~~k~~~~k~~~e~r~L~------Ekl~~lEKe~a~~----eid~~ 142 (168)
T 3o0z_A 77 ILEAERRDRGHDSEMIGDLQA----RITSLQEEVKHLKHNLEKVEGERKEAQ------DMLNHSEKEKNNL----EIDLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhh----hHHHH
Confidence 333333222223344444544 456788888888888776666555543 5555556633222 22688
Q ss_pred HHHHHHHHHHh
Q 004913 593 HECRILLNRFQ 603 (724)
Q Consensus 593 hec~iL~~rLq 603 (724)
+|...|++|++
T Consensus 143 ~eLKalQ~~~e 153 (168)
T 3o0z_A 143 YKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.83 E-value=1.4 Score=58.56 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=47.3
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
+=||....+++++|..++.+..+.+.-|.+=.++.+.-+.--.+.+.|...|.+.++.|...+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888777777777776666666666666777888888888888887665
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.98 E-value=3.3 Score=41.06 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=81.5
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHH
Q 004913 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELD 515 (724)
Q Consensus 436 KvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~ 515 (724)
==|.||.|||+....+.....+. +.+..++.-+.+.+|.|+...-. +...+.+.|..++.
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L----~~~~~~L~~E~e~~k~K~~~~~~----------------e~~~~~~~Lq~el~ 98 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDL----QADNQRLKYEVEALKEKLEHQYA----------------QSYKQVSVLEDDLS 98 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 35788888888877666555443 56777888888888888754321 11222223555566
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 004913 516 ATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHEC 595 (724)
Q Consensus 516 ~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec 595 (724)
.+++..+.|++..-++|.+- --|-+..|....|...+.+-++++|...+=+|.=|. || +.....--.|..|+
T Consensus 99 ~l~~~~~~l~~~ireLEq~N----DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~-EK---e~l~~~~QRLkdE~ 170 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQAN----DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD-EK---ESLLVSVQRLKDEA 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHH
Confidence 66666666666666666543 345566677899999999999999999887776664 23 23333344555566
Q ss_pred HHHHHHH
Q 004913 596 RILLNRF 602 (724)
Q Consensus 596 ~iL~~rL 602 (724)
+-|+.-|
T Consensus 171 rDLk~El 177 (189)
T 2v71_A 171 RDLRQEL 177 (189)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6555433
No 38
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=91.56 E-value=9.1 Score=35.92 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=106.1
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
+..|+++++-.=+.+++..|.+..-+.. -.+.+....+++ +..+|+..+..|+.+.+....|=...-..
T Consensus 4 ~F~~~~~~l~~Wl~~~~~~l~~~~~~~d--l~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~-------- 73 (214)
T 1s35_A 4 AFLQDLDDFQAWLSITQKAVASEDMPES--LPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDP-------- 73 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCc--------
Confidence 3568888888889999999987643322 223455666666 88888888888888887777665432110
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChhh
Q 004913 547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAAD 626 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~d 626 (724)
.-..+++-+...-..+..+......=+++-+.+.. ...|.++|.-+-+-|.+.-.-+..++= +.++..
T Consensus 74 -----~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~-l~~F~~~~~~~~~Wl~~~E~~l~~~~~------g~~~~~ 141 (214)
T 1s35_A 74 -----EYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEAILSNQEYTLAHLEP------PDSLEA 141 (214)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCC------CSSHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccC------CCCHHH
Confidence 11344445566666666666666665656555544 567999999998888877654432221 224555
Q ss_pred HHHhh----------cccchhHHHHHHHHhhhhhhhhh
Q 004913 627 ALALL----------TSSDDQISLLITEAQLLAEDSKA 654 (724)
Q Consensus 627 a~dlL----------~tsDnrI~lLlaEaqll~~d~e~ 654 (724)
+-.|| ..-.++|.-|.+.++-|+..+..
T Consensus 142 v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~ 179 (214)
T 1s35_A 142 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNL 179 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 54443 45567888888888888766533
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.42 E-value=0.28 Score=54.95 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=86.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH-------------HHH-HHhhhhHHHHHHHHHHHHhHHHHH
Q 004913 506 KDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVK-------------EVK-FLRSSQIGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 506 ~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK-------------EVK-sLR~s~~~lk~el~~~~~eK~e~E 571 (724)
+|.++...|..+|.+|++++|-+.+.+.-.+.-+..|.+ ||= .||+.+..||.++..-++.+.-|+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344488999999999999998888888776655555533 333 699999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-cccccC
Q 004913 572 ELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL-YAEEED 615 (724)
Q Consensus 572 ~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~-~~ee~~ 615 (724)
.+|...+.+..+-..+=.--|+.|+-=|.|--+..|++ .|+...
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~Q 182 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHH
Confidence 99999998888888887788888887777766666665 344433
No 40
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=90.84 E-value=1.8 Score=42.32 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=54.7
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHh-hhhhh--HHHHHHhhhhhhHHHHHHHHHh-------hHHHHHHHHHHhhHh
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRL-NQEMT--VKDYLMTKVKDLEVELETTKQK-------SKETLQQAILSERER 465 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRL-nqe~a--vk~fL~tKvkDlE~eLe~t~~~-------~ke~lqQa~l~ErEr 465 (724)
.-+-.|...+-..+.+++..+.++..-| +...+ ++..+...+++|..-.+..+.+ -+.++.+.+=.=|+
T Consensus 24 s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~- 102 (191)
T 1nfn_A 24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA- 102 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-
Confidence 3567788888999999999999999887 11111 1222333333333322223222 22333333322233
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.|++|||+||.++.-|=..|+..
T Consensus 103 --~l~kdlEelr~kL~P~~eEL~~~ 125 (191)
T 1nfn_A 103 --RLGADMEDVCGRLVQYRGEVQAM 125 (191)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46999999999999988888765
No 41
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.38 E-value=13 Score=36.32 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 004913 464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLV 543 (724)
Q Consensus 464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLv 543 (724)
|+|++ |-+++.|+-.+|+++.+. .+.-.| ..-|+.....++|..-.++.+.=....+.+..|-
T Consensus 6 eKi~~-------LekQL~E~n~kLk~EsE~---------~~rlkK-~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Le 68 (168)
T 3o0z_A 6 EKLSQ-------LQKQLEEANDLLRTESDT---------AVRLRK-SHTEMSKSISQLESLNRELQERNRILENSKSQTD 68 (168)
T ss_dssp ----C-------THHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHhHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777 566777777777777221 111111 1224444444445444444444455555666677
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
+||-.|.++..+=+...++.-....+++.=++.=....++.+..-.++.-|-+-|+.||
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655555444555555555554444333333444444445555555555544
No 42
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=85.94 E-value=24 Score=36.34 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 004913 453 ETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 453 e~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~elE 532 (724)
..|++.+-.=|+++.. .+|+||.++.-+-..+++.-.+. .|.-..++..-. ..+++|+|.+++.. +
T Consensus 161 ~ql~~~a~~L~~~l~~---~~eeLr~~L~p~ae~lr~~l~~~--~e~l~~~l~~~~------~~~~qq~e~f~~~~---~ 226 (273)
T 3s84_A 161 FQMKKNAEELKARISA---SAEELRQRLAPLAEDVRGNLRGN--TEGLQKSLAELG------GHLDQQVEEFRRRV---E 226 (273)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSSC--HHHHHHHHHHHH------HHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHH------HHHHHHHHHHHHHh---H
Confidence 3444444444555554 68899999988888887752221 111111111111 22334444443332 2
Q ss_pred hhcccchhHHHHHHHHHhhhh
Q 004913 533 AKSKADIKVLVKEVKFLRSSQ 553 (724)
Q Consensus 533 akskad~KvLvKEVKsLR~s~ 553 (724)
-.+.+=.+-|+..|+-||...
T Consensus 227 p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 227 PYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 222222566777777777665
No 43
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=83.08 E-value=45 Score=34.27 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.7
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhcc
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks 489 (724)
--+.++|+||+||+++.-|=..|+.
T Consensus 60 l~~~~~~~~eelr~kL~p~~~el~~ 84 (273)
T 3s84_A 60 LRTQVNTQAEQLRRQLTPYAQRMER 84 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3356778888888887766555543
No 44
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=82.88 E-value=29 Score=32.97 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=65.2
Q ss_pred HHHhhhhcchHHHHHHhhhh-hhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHH
Q 004913 407 RRLVTAKTDMEDLITRLNQE-MTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEW 485 (724)
Q Consensus 407 ~rl~~aktdmEDLiaRLnqe-~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~ 485 (724)
.++..+...-+.|++.-.-. ..|++.| ..|.+...+|...-..-+..|+|+.- +-++..|++++..=+.+.|.
T Consensus 67 ~~~~~~~~~G~~Ll~~~~~~~~~i~~~l-~~L~~~w~~L~~~~~~R~~~L~q~l~-----l~~F~~d~~~~~~WL~~~e~ 140 (218)
T 3fb2_A 67 GTFQAFEQFGQQLLAHGHYASPEIKQKL-DILDQERADLEKAWVQRRMMLDQCLE-----LQLFHRDCEQAENWMAAREA 140 (218)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666553322 2233322 34555566666666677777887752 34556688888888888888
Q ss_pred HhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 486 KLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA 537 (724)
Q Consensus 486 ~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska 537 (724)
.|.+.. -+..-...+.+..+.+ +..+|.+..+.+..|....+.|=...-.
T Consensus 141 ~L~~~~--~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~h~ 191 (218)
T 3fb2_A 141 FLNTED--KGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHY 191 (218)
T ss_dssp CC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hhcCCC--CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 887752 2222233455666666 7777877777777777766666544433
No 45
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.21 E-value=9.2 Score=33.87 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
++-|-+|++.|......|.+||...-+++..+..-|..-+...+.-..--.++.+|...++-++-+|
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~ 72 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLEL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666666666666555555554444444444455555555555555544
No 46
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=82.20 E-value=37 Score=38.90 Aligned_cols=193 Identities=8% Similarity=0.013 Sum_probs=100.1
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHh---hHHHHHHHHHHhhHh----hhhhhhcHH
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQK---SKETLQQAILSERER----LTQMQWDME 474 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~---~ke~lqQa~l~ErEr----~t~mqwdme 474 (724)
|...+.|+.+....-+.|++- +.. -.+.+..++.+|...-+..+.. -+..|++|... .+. +-++.|+++
T Consensus 420 l~~~~~~v~~l~~~~~~L~~~-~~~--~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~-~q~~~~l~~~f~~~a~ 495 (863)
T 1sjj_A 420 LAAHQDRVEQIAAIAQELNEL-DYY--DSPSVNARCQKICDQWDNLGALTQKRREALERTEKL-LETIDQLYLEYAKRAA 495 (863)
T ss_dssp HTTHHHHHHHHHHHHHHHHHT-CCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhC-Ccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333444555544444444421 111 1245556666666544444433 33445555433 211 225678888
Q ss_pred HHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cc-------cchhHHH
Q 004913 475 ELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK---SK-------ADIKVLV 543 (724)
Q Consensus 475 elr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak---sk-------ad~KvLv 543 (724)
++..=+.+.|..|.+..-+ ......+...++++ +..+|...+..++.+..-..+++.- .. ...+..
T Consensus 496 ~~~~Wl~~~e~~l~~~~~g--~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~- 572 (863)
T 1sjj_A 496 PFNNWMEGAMEDLQDTFIV--HTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTIT- 572 (863)
T ss_dssp TTHHHHHHHHHHHHCCCCC--SSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCC-
T ss_pred HHHHHHHHHHHHhcchHhh--ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCC-
Confidence 8888899999999886443 33333566777777 7778877776666655444444331 11 111111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
+..|+....+|.+ .+..-+ .-|+++.++.+....-+..|..+|..+..-|+|.--.+.
T Consensus 573 --~~~L~~rw~~L~~---~~~~R~----~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~ 630 (863)
T 1sjj_A 573 --PQEINGKWEHVRQ---LVPRRD----QALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIG 630 (863)
T ss_dssp --HHHHHHHHHHHHH---HHHHHH----HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHH---HHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222111 111122 223333333333445567788999999999988876664
No 47
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=81.43 E-value=36 Score=33.81 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=50.5
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
+-|.++|+.|+..=+.++|..|.+..-+ .-..+.+....+++ +..++.+.+..++.|.+....|=..
T Consensus 6 ~qqf~~~~~el~~Wl~e~~~~l~~~~~g--~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~ 73 (326)
T 3kbt_A 6 AQQYYLDADEAEAWIGEQELYVISDEIP--KDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSA 73 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3467899999999999999999875433 33444466666766 8888988888888888877776543
No 48
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.21 E-value=20 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 571 EELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 571 E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
+.-|..|.++...-.+..+|+-.+|.-|...|.+-
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666667788899999999999998764
No 49
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=79.91 E-value=38 Score=31.41 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=95.1
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
-+..|+++++-.=+.+.|..+.+..-++.. ...+....+++ +..+|...+..++.+.+....|-...-.+. .+
T Consensus 3 ~qf~~~~~~~~~Wl~e~e~~l~~~~~g~dl--~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~----~~ 76 (213)
T 1cun_A 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDL--TGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGK----EE 76 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTH----HH
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCcccCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcH----HH
Confidence 467889999999999999888775333322 23355555555 778888888888888877777654332221 12
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChh
Q 004913 546 VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAA 625 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~ 625 (724)
+.+-+...-..+..+......-+++-+.+... .+|..+|.-+.+-|.+...-+...+=| .+..
T Consensus 77 ----------i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~~-~~f~~~~~e~~~Wl~~~e~~l~~~~~g------~~~~ 139 (213)
T 1cun_A 77 ----------IQQRLAQFVDHWKELKQLAAARGQRLEESLEY-QQFVANVEEEEAWINEKMTLVASEDYG------DTLA 139 (213)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCCC------SSHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCC------CCHH
Confidence 22333344444455555554445555555433 688889998888888875433222111 1343
Q ss_pred hHHHhh----------cccchhHHHHHHHHhhhhhh
Q 004913 626 DALALL----------TSSDDQISLLITEAQLLAED 651 (724)
Q Consensus 626 da~dlL----------~tsDnrI~lLlaEaqll~~d 651 (724)
.+-.|| .....+|.-|...++-|+..
T Consensus 140 ~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~ 175 (213)
T 1cun_A 140 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333 22345666666666666544
No 50
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.83 E-value=16 Score=35.22 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=60.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 004913 504 TVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNH 583 (724)
Q Consensus 504 ~~~e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~ 583 (724)
|...-.|-.+|-++|++++...-+...+|. +|....+|..+++..-.++..+..-|.+|+.++..
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~---------------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~ 76 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQ---------------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTK 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH---------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333344778888999988888777766663 33334445556666677777777888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004913 584 MKTVREKLLHECRILLNRF 602 (724)
Q Consensus 584 ~~~ar~kllhec~iL~~rL 602 (724)
+...+.++=.|+.-|-.-|
T Consensus 77 aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888775544
No 51
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=78.34 E-value=44 Score=31.22 Aligned_cols=124 Identities=12% Similarity=0.155 Sum_probs=76.6
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
.-+.+++++++..=+.++|..|.+..-++ .. ...+....+++ +..++.+.+..++.+.....+|-...-.+...+
T Consensus 5 ~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~-dl-~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i-- 80 (216)
T 1u5p_A 5 QQNFNTGIKDFDFWLSEVEALLASEDYGK-DL-ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQV-- 80 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCS-SH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH--
Confidence 34678899999999999999998863333 22 22344455555 888888888888888888888765443332222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACN 606 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~ 606 (724)
+.-+...-..+..+......=+.+-+.+.. ..+|.++|.-+.+-|.+.-
T Consensus 81 ------------~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~qf~~~~~~~~~Wl~e~e 129 (216)
T 1u5p_A 81 ------------KDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESWIKEKK 129 (216)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 222222233333333333333333333322 3568889999888888864
No 52
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=77.68 E-value=49 Score=31.36 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=93.5
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
.+..+++.+|..=+.+++..|.+..-.... ...+....+++ +..+|++....++.+.+....|=.....+ +
T Consensus 16 ~~F~~~~~~l~~Wl~~~~~~l~~~e~~~d~--~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~----~-- 87 (218)
T 3fb2_A 16 QRFLSDFRDLMSWINGIRGLVSSDELAKDV--TGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYA----S-- 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSS--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTT----H--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCc----h--
Confidence 455778899999999999999875332222 23355566666 87888888888888887777764433221 1
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChh
Q 004913 546 VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAA 625 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~ 625 (724)
.++++-|.+.-..+..+......=+++-+.+.. ...|..+|.-+..=|.++-.-+... + + +.++.
T Consensus 88 --------~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~l~-l~~F~~d~~~~~~WL~~~e~~L~~~--~-~---g~s~~ 152 (218)
T 3fb2_A 88 --------PEIKQKLDILDQERADLEKAWVQRRMMLDQCLE-LQLFHRDCEQAENWMAAREAFLNTE--D-K---GDSLD 152 (218)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC--C-C---CCCHH
Confidence 233444555555555555555555555555443 4678888888888777765443321 1 1 12344
Q ss_pred hHHHh----------hcccchhHHHHHHHHhhhhhhh
Q 004913 626 DALAL----------LTSSDDQISLLITEAQLLAEDS 652 (724)
Q Consensus 626 da~dl----------L~tsDnrI~lLlaEaqll~~d~ 652 (724)
++-.+ |..-..+|.-|...++-|+..+
T Consensus 153 ~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~ 189 (218)
T 3fb2_A 153 SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAG 189 (218)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 43333 3344567777777777776544
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=74.62 E-value=71 Score=31.69 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=55.6
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 004913 465 RLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLV 543 (724)
Q Consensus 465 r~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLv 543 (724)
.+.+|+=.++|+..-+.++|..|..+ . ..+...+. +...+...+..++.+..++...-..+-+.+-.|-
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~e--------L--~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQ--------L--VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777666544 1 22222222 6666666666666776777666666666777788
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~ 563 (724)
+||-.||.....|++-+-..
T Consensus 95 ~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666655443
No 54
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=73.74 E-value=42 Score=35.20 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=51.5
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHH-------HHHHHHhhHhh-hh
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETL-------QQAILSERERL-TQ 468 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~l-------qQa~l~ErEr~-t~ 468 (724)
.+-.|...+.--+.++++.+.++..-|- ...+-.=+.++..++..+|.+...+-++.| ..=+..+-+.+ .+
T Consensus 33 ~~e~v~~~fwdY~~~~~~~a~~~~eql~-~s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~ 111 (307)
T 2l7b_A 33 RWELALGRFWDYLRWVQTLSEQVQEELL-SSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQAR 111 (307)
T ss_dssp HHHHHHHHHHHHHHHTCCCSTHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHH
Confidence 4677888888888999998888887762 222222233334444444433222211111 11111111111 35
Q ss_pred hhhcHHHHHHHHHHHHHHhccc
Q 004913 469 MQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~ 490 (724)
+++|||++|+++.-+=..|+..
T Consensus 112 L~~dlEelR~~L~Py~~el~~~ 133 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAM 133 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999988777666655
No 55
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.12 E-value=5.3 Score=34.02 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.7
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
+.+|.+|+=+.|..-.+..+.+.+++..+......+....++..... +..+++.+.+.+...+..+++-|-.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777776655566666677777777 8888888888888888888776643
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.12 E-value=60 Score=34.67 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004913 429 VKDYLM 434 (724)
Q Consensus 429 vk~fL~ 434 (724)
+..|-.
T Consensus 344 L~gyC~ 349 (487)
T 3oja_A 344 LKEQYR 349 (487)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 334433
No 57
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.62 E-value=24 Score=34.00 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHh
Q 004913 436 KVKDLEVELETTKQK 450 (724)
Q Consensus 436 KvkDlE~eLe~t~~~ 450 (724)
|.-+||.+|-.|++.
T Consensus 14 ~qs~LeD~L~~~R~e 28 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKT 28 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH
Confidence 344555555555544
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.98 E-value=7.9 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhccc
Q 004913 473 MEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 473 meelr~k~~e~E~~lks~ 490 (724)
+-|+|+..+.++..|.+.
T Consensus 40 i~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334666666665555433
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.68 E-value=10 Score=34.65 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhcc
Q 004913 474 EELRQKSLEMEWKLKS 489 (724)
Q Consensus 474 eelr~k~~e~E~~lks 489 (724)
-|+|+..+.++..|.+
T Consensus 39 ~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355555555554433
No 60
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.18 E-value=12 Score=35.04 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 004913 542 LVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~ 561 (724)
|.+|+..|..+...|..++.
T Consensus 115 l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 115 LKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444443
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.97 E-value=66 Score=34.19 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhHHHHHHHH--HHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 429 VKDYLMTKVKDLEVELETTKQKSKETLQQAI--LSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 429 vk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~--l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
+..++.-+ ++.|..|+...++..+.|.+.. ..-|.+.+-||=.++|++....+.|..-.+|
T Consensus 361 ~~~vl~G~-~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 361 VINAASGR-QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 34444443 3566666666666655555433 2235566667888888888888887776666
No 62
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.44 E-value=59 Score=29.50 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred hHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 004913 504 TVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHN 582 (724)
Q Consensus 504 ~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e 582 (724)
+..++. +.-+++-++..+++++.+|++- ...| .++-+....||+.++.+.-.|.++|.=++-=++...
T Consensus 32 ~~~e~a~l~leldn~~~~~edfk~KyE~E-~~~r----------~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 32 LTNDKARVEVERDNLAEDIMRLREKLQEE-MLQR----------EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHH----------HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 334555 5557888888888888888752 2111 233456667888899999999999976654443222
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhh
Q 004913 583 HMKTVREKL-LHECRILLNRFQA 604 (724)
Q Consensus 583 ~~~~ar~kl-lhec~iL~~rLqE 604 (724)
+ .+++ =.|++.|+.++|+
T Consensus 101 F----LKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 101 F----LKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp H----HHHHHHHHHHHHHSCC--
T ss_pred H----HHHHHHHHHHHHHHHhcC
Confidence 2 2222 2377788877763
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.29 E-value=67 Score=28.41 Aligned_cols=84 Identities=27% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKAD---IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad---~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
.|...+.+.++...+.+.+|++.|.- ..-+--||.+|.+-...+..+|..+-..-.+...-|....+...
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~------- 82 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA------- 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34444444444444444444443322 22356799999999999999999887666666554444432222
Q ss_pred HHHHHHHHHHHHHh
Q 004913 590 KLLHECRILLNRFQ 603 (724)
Q Consensus 590 kllhec~iL~~rLq 603 (724)
+-=.|+..|..|+|
T Consensus 83 ~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 83 KAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22236666666666
No 64
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=67.05 E-value=10 Score=36.20 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=31.4
Q ss_pred CCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHH
Q 004913 492 DGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRY 528 (724)
Q Consensus 492 ~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~ 528 (724)
.++++++..+..+..+.+ |+..++.+++.+|.|.+.-
T Consensus 7 ~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV 44 (141)
T 3okq_A 7 SNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDV 44 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345677788889999999 9999999999999998753
No 65
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=66.65 E-value=83 Score=29.28 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=78.5
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHh-h-hhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRL-N-QEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDM 473 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRL-n-qe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdm 473 (724)
.-+..=|..-+.++..+...-+.|++.- + ....|++- ...+.+....|...-..-+..|+|+.- +-+..-|+
T Consensus 43 ~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~-l~~L~~~w~~L~~~~~~r~~~L~~~l~-----l~~F~~~~ 116 (214)
T 1s35_A 43 AGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQR-LEGLDTGWDALGRMWESRSHTLAQCLG-----FQEFQKDA 116 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 3344444555566666665566666542 1 12233333 235566666777777778888888763 44566788
Q ss_pred HHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 474 EELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 474 eelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
+++-.=+.+.|..|.+..-+. .....+....+++ +..+|.+.++.++.|.+....|=
T Consensus 117 ~~~~~Wl~~~E~~l~~~~~g~--~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~ 174 (214)
T 1s35_A 117 KQAEAILSNQEYTLAHLEPPD--SLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLV 174 (214)
T ss_dssp HHHHHHHHHHHHHHHCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888888888898887653332 2333455555555 66667666666666666555553
No 66
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=66.41 E-value=81 Score=29.31 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=69.8
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhh-hHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhc
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEM-TVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWD 472 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~-avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwd 472 (724)
++..+..-|..-+.++..+...-+.|+..-+-.. .|++ ....|.+...+|...-.+-+..|+|+.-. -+...|
T Consensus 45 ~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~-~l~~L~~~w~~L~~~w~~r~~~L~~~l~l-----~~F~~d 118 (185)
T 3lbx_B 45 YHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIRE-KLQQVMSRRKEMNEKWEARWERLRMLLEV-----CQFSRD 118 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHh
Confidence 4445555666667777777777777777654222 1222 23344555556666666666777777532 244568
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHH
Q 004913 473 MEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLS 525 (724)
Q Consensus 473 meelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~ 525 (724)
++++-.=+...|..|.+..-+ ..-...+.++.+++ +.+.|.+..+.+..|.
T Consensus 119 ~~~~~~Wl~~~e~~L~~~~~g--~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~ 170 (185)
T 3lbx_B 119 ASVAEAWLIAQEPYLASGDFG--HTVDSVEKLIKRHEAFEKSTASWAERFAALE 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC--SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhccCCCC--CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 888888888888888764222 22222344444444 4444554444444444
No 67
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=65.46 E-value=1.1e+02 Score=34.85 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=50.1
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADI 539 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~ 539 (724)
+.+++|+++++-.-+.++|..|.+..-+.... ...+....+++ +..++...+..++.+.....+|....-.+.
T Consensus 372 ~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl-~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~ 445 (863)
T 1sjj_A 372 AEKFRQKASIHESWTDGKEAMLQQKDYETATL-SEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDS 445 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 46789999999999999999998843322122 23344555555 777777777778877777777765444443
No 68
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.72 E-value=74 Score=28.65 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhhHHHHHHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER-QTHNHMKTVREK 590 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er-~~~e~~~~ar~k 590 (724)
++++.+|+++..|..+...++.. ++.|..++.-=|..-.+..+++++.-.|--+|-..|=.|- .+...++..|.+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e----~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDE----VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554433 3334433333344444555666666666666666665554 344555566667
Q ss_pred HHHHHHHHHHHHhhh
Q 004913 591 LLHECRILLNRFQAC 605 (724)
Q Consensus 591 llhec~iL~~rLqEC 605 (724)
+=...+.|+.+|.+-
T Consensus 81 ~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 81 IEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 777778888888764
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.51 E-value=70 Score=27.66 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+.+++..+++.++...+...++|.+ ..-|..|.-.|-.+..+...-..++...|.++|..|.
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~----~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQ----NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655 3445555555555545555555555555555555554
No 70
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=63.66 E-value=23 Score=38.35 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=5.7
Q ss_pred cccCceecccC
Q 004913 612 EEEDNVILESS 622 (724)
Q Consensus 612 ee~~~~~~~~s 622 (724)
+|++|..+..-
T Consensus 113 ~e~~n~~~~~~ 123 (421)
T 1ses_A 113 GEEANREIKRV 123 (421)
T ss_dssp SGGGCEEEEEE
T ss_pred CccccEEEEEe
Confidence 45566655443
No 71
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=63.33 E-value=1.1e+02 Score=30.61 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHhccc-----cCCCCcccchhhhhHHHHh--HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 472 DMEELRQKSLEMEWKLKSK-----QDGNPHAESMEESTVKDKN--VLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~-----~~~~~~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
++++++.++...-..|+.. ++=+... +-...|.. +.+.++..|++|.-+.+++ ++-+..
T Consensus 67 ~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l----~Py~~el~~~~~~~~eelr~~L~P~~eel----------~~~~~~ 132 (243)
T 2a01_A 67 VTQEFWDNLEKETEGLRQEMSKDLEEVKAKV----QPYLDDFQKKWQEEMELYRQKVEPLRAEL----------QEGARQ 132 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSSCSSTTH----HHHHHHHHHHHHHHHHHHHTTHHHHHHHH----------HHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHh
Confidence 4455555555544444443 2222222 33344444 5567777777776666655 233455
Q ss_pred HHHHHhhhhHHHHHHH
Q 004913 545 EVKFLRSSQIGLKQEL 560 (724)
Q Consensus 545 EVKsLR~s~~~lk~el 560 (724)
.|..||....-.-.|+
T Consensus 133 ~~eel~~~L~p~~eel 148 (243)
T 2a01_A 133 KLHELQEKLSPLGEEM 148 (243)
T ss_dssp HHHHHCCSCCSSTHHH
T ss_pred hHHHHHHHHHhHHHHH
Confidence 5555665554444444
No 72
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=62.98 E-value=26 Score=33.63 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHH---HHhhhhhhHHHHHHHHH-------hhHHHHHHHHHHhhHh-h
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDY---LMTKVKDLEVELETTKQ-------KSKETLQQAILSERER-L 466 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~f---L~tKvkDlE~eLe~t~~-------~~ke~lqQa~l~ErEr-~ 466 (724)
+-.|...+--=+.++++-.+|.+.-|-+-.--+++ |...+..|.......+. .-+..+.+. .+- =
T Consensus 9 ~e~v~~~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~----~~~Lr 84 (185)
T 3r2p_A 9 WDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKE----TEGLR 84 (185)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHHHHHSHHHHHTTCCCCTTCSCSSCHHHHHHHHHCSCCHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHH
Confidence 44566666666666666666666655544333443 22222222222211111 112222221 111 1
Q ss_pred hhhhhcHHHHHHHHHHHHHHhcc
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKS 489 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks 489 (724)
..++.||||+|.++.-+=..++.
T Consensus 85 ~~l~kdlee~r~~l~P~~~e~~~ 107 (185)
T 3r2p_A 85 QEMSKDLEEVKAKVQPYLDDFQK 107 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHH
Confidence 23677888888887766554443
No 73
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=61.99 E-value=14 Score=31.51 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=36.2
Q ss_pred chhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Q 004913 394 QRHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (724)
Q Consensus 394 ~r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~ 448 (724)
+|..++++|..++.-|..+|.||+.. ++| -.+.|..|++ ||.|++|-+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~q----l~E--Yq~LlniKl~-Le~EIatYR 53 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQ----LDE--YQELLDIKLA-LDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHH-HHHHHHHHH
Confidence 57888999999999999999998654 333 2566777775 777777765
No 74
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=61.22 E-value=1.2e+02 Score=29.30 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=84.0
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
-+..|+++++-.=+.+.|..|.+..- -+.--...+.+..+++ +..++.+.+..++.+.....+|-+..-.+..-+..=
T Consensus 17 ~~F~~~~~e~~~Wl~e~e~~l~~~~~-~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r 95 (250)
T 1quu_A 17 EKFRQKASTHETWAYGKEQILLQKDY-ESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDR 95 (250)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 46788888888888888888887422 1333344566777777 889999999999999999999987766553322211
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 546 VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
...|...=..|++ .. ..=..-|....+..+.-..++..|..+|..+..-|.+--..+.
T Consensus 96 ~~~l~~~W~~L~~----~~---~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~ 153 (250)
T 1quu_A 96 CQKICDQWDRLGT----LT---QKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ 153 (250)
T ss_dssp HHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 2222222111111 11 1111222333333333445667899999999999988765554
No 75
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=61.00 E-value=49 Score=31.69 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=18.0
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccc
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
+.++|+||++|.+..=+=..|+..
T Consensus 107 ~~~~~~~e~lr~~l~Py~~el~~~ 130 (185)
T 3r2p_A 107 KKWQEEMELYRQKVEPLRAELQEG 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346889999999888776666544
No 76
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.71 E-value=40 Score=36.98 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=7.9
Q ss_pred ccccCceecccCC
Q 004913 611 AEEEDNVILESSS 623 (724)
Q Consensus 611 ~ee~~~~~~~~ss 623 (724)
.+|+||..|..-+
T Consensus 118 ~~e~~n~~~~~~g 130 (455)
T 2dq0_A 118 KDENDNVPIRFWG 130 (455)
T ss_dssp SSGGGCEEEEEES
T ss_pred CCCCCCEEEEEcC
Confidence 4566777666543
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.61 E-value=29 Score=31.22 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
.++.=+||-....|+.+++..-.++..+-.-|.+|+.++..+...+.++=+|+.-|-.-|
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777777788888899999999999999999999988776544
No 78
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.28 E-value=29 Score=38.64 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=6.1
Q ss_pred ccccCceecc
Q 004913 611 AEEEDNVILE 620 (724)
Q Consensus 611 ~ee~~~~~~~ 620 (724)
.+|+||..|.
T Consensus 120 ~~e~~n~~v~ 129 (485)
T 3qne_A 120 QDEENNELVR 129 (485)
T ss_dssp SCGGGCEEEE
T ss_pred CCccCCEEEE
Confidence 3566777664
No 79
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.95 E-value=19 Score=31.91 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=50.8
Q ss_pred HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
..|..|+-+.|..-.++-+.|.+++..++.....|....++...+. +..+++.++++|......+++-+
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666677777777777777766677777788888887 77888888888888877777664
No 80
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=58.08 E-value=1.8e+02 Score=30.39 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=56.0
Q ss_pred hhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 004913 466 LTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVK 544 (724)
Q Consensus 466 ~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvK 544 (724)
.-+.+++++++-.-+.++|..|.+..- -+..-...+....+++ +..++...+..++.+.....+|-.....+..-+..
T Consensus 133 ~~~f~~~~~~~~~Wl~e~e~~l~~~~~-~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~ 211 (476)
T 1hci_A 133 AEKFRQKASTHETWAYGKEQILLQKDY-ESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVND 211 (476)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHCCGG-GSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCc-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHH
Confidence 356688889999889999988876422 0222233456666666 87888888888888888888876655555443333
Q ss_pred HHHHHhhh
Q 004913 545 EVKFLRSS 552 (724)
Q Consensus 545 EVKsLR~s 552 (724)
=+..|...
T Consensus 212 ~~~~l~~~ 219 (476)
T 1hci_A 212 RCQKICDQ 219 (476)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 81
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=57.88 E-value=1.2e+02 Score=28.21 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHH
Q 004913 444 LETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLE 522 (724)
Q Consensus 444 Le~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e 522 (724)
|...-..-+..|+++.. +-++.+|++++-.=+.+.|..+.+..-+ ..-...+....+++ +..++...+..++
T Consensus 94 L~~~~~~R~~~Le~~~~-----l~qf~~~~~~~~~Wl~e~e~~~~~~~~g--~dl~~v~~ll~kh~~~~~el~~~~~~i~ 166 (216)
T 1u5p_A 94 IKSMAAARRAKLNESHR-----LHQFFRDMDDEESWIKEKKLLVSSEDYG--RDLTGVQNLRKKHKRLEAELAAHEPAIQ 166 (216)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCCCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHhcCcccC--CCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444555665543 4567889999999999998877664322 22333455556666 7777877777777
Q ss_pred HHHHHHHHHhh
Q 004913 523 NLSKRYEELEA 533 (724)
Q Consensus 523 ~l~k~~~elEa 533 (724)
.+......|-.
T Consensus 167 ~l~~~g~~L~~ 177 (216)
T 1u5p_A 167 GVLDTGKKLSD 177 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776643
No 82
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.65 E-value=17 Score=34.50 Aligned_cols=123 Identities=16% Similarity=0.313 Sum_probs=67.4
Q ss_pred HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHH
Q 004913 405 MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEME 484 (724)
Q Consensus 405 ~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E 484 (724)
|+||+...--|.+.-=.||... ++|+..++...+-.-+..| .|+.--+.-=|||.++.|.+.+.+.-..+.+
T Consensus 1 l~Rri~llEeeLer~eerl~~a-------~~kLeeaek~adE~eR~~k-~lE~r~~~deEr~~~lE~qLkeak~~aeead 72 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATA-------LQKLEEAEKAADESERGMK-VIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 72 (147)
T ss_dssp ----------CCGGGGTTTTHH-------HHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555566553 4577777777766665544 4655444547899998888888877777766
Q ss_pred HHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhh
Q 004913 485 WKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQ 553 (724)
Q Consensus 485 ~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~ 553 (724)
.++..- ..... +-.+|..+.+..+.+..+..+||. +++++..-+|+|-.+-
T Consensus 73 rKyeE~--------------~RKl~~~E~dLeraeeRae~aE~k~~eLEe----eL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 73 RKYEEV--------------ARKLVIIESDLERAEERAELSEGKCAELEE----ELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHhH
Confidence 665322 11122 333455555555555555555554 4456667777765553
No 83
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=57.38 E-value=41 Score=32.27 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+-|.+.....|....+++.++...-.++.+++.-+++=.+...-..++|..|=++....|.-.+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554433332222222335666666666666655443
No 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=56.43 E-value=59 Score=36.26 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=12.5
Q ss_pred hhhcHHHHHHHHHHHHHHhccc
Q 004913 469 MQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 469 mqwdmeelr~k~~e~E~~lks~ 490 (724)
|--|+.-+|........+|+..
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R 60 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLR 60 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHc
Confidence 4456666666555555555554
No 85
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=55.20 E-value=31 Score=32.98 Aligned_cols=107 Identities=17% Similarity=0.268 Sum_probs=48.3
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh
Q 004913 431 DYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN 509 (724)
Q Consensus 431 ~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~ 509 (724)
+=|.+||.||..-.|..| +++.+.-|---.--+-.++=|++.++..+..|+..++.+ -.=+.-=|..++.+.+|-+
T Consensus 24 d~LvtkVDDLQD~VE~LR---kDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQq 100 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMR---KDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 345555555555555443 222222222211122233344555555555565555554 1111222334455666655
Q ss_pred ---HHHH-HHHHHHHHHHHHHHHHHHhhhcccchh
Q 004913 510 ---VLQE-LDATKEQLENLSKRYEELEAKSKADIK 540 (724)
Q Consensus 510 ---~~qe-l~~~~~~~e~l~k~~~elEakskad~K 540 (724)
+.++ +.+.++.|+.+++=+.-+|.-.+-+.|
T Consensus 101 fl~~QedL~~DL~eDL~ka~etf~lVeq~~~eq~k 135 (141)
T 3okq_A 101 FLTLQEELILDLKEDLGKALETFDLIKLCCEEQEK 135 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 456677777777777666655544433
No 86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.06 E-value=78 Score=35.95 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=44.8
Q ss_pred cCCceEEecccchhhHhHHHHH----HHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHH
Q 004913 383 SGDAELVIPLDQRHKLSRVLLT----MERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQA 458 (724)
Q Consensus 383 ~~d~~~vlp~d~r~kl~rvl~t----~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa 458 (724)
+.|..+-.|.==| |.-.|.- +..||...|...||| . ..=+|.+.-...++..-++.+.|+
T Consensus 38 DeDwGvkCPSGCr--LQglLdkqErDltkrINELKnqLEdl-s-------------KnsKdseqy~k~~~E~Lr~rq~q~ 101 (562)
T 3ghg_A 38 DEDWNYKCPSGCR--MKGLIDEVNQDFTNRINKLKNSLFEY-Q-------------KNNKDSHSLTTNIMEILRGDFSSA 101 (562)
T ss_dssp SSSBTTEEECHHH--HHHHHHHHHHHHHHHHHHHHHHHTHH-H-------------HHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred ccccCCCCCcccc--hhhhHHhhcCcHHHHHHHHHHHHHHH-H-------------hhchhHHHHHHHHHHHHHHHHHhh
Confidence 5677778887544 2222222 223333333333343 2 233344444444455555555555
Q ss_pred HHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 459 ILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 459 ~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
. +....+.|+ -+|||++.+.++.+|++-
T Consensus 102 ~-dNdNtynE~---S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 102 N-NRDNTYNRV---SEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp H-HHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred h-ccchhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5 444555553 246888887777777654
No 87
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=53.90 E-value=1.4e+02 Score=27.62 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH---hhHHHHHHHHHHhhHhhhhhhhcHHHHHH
Q 004913 402 LLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ---KSKETLQQAILSERERLTQMQWDMEELRQ 478 (724)
Q Consensus 402 l~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~---~~ke~lqQa~l~ErEr~t~mqwdmeelr~ 478 (724)
|..-+.++..+...-+.|+.. + ..+ .+-+..++.+|...-..... .-+..|+++.. +-+...|++++..
T Consensus 49 i~~~~~~v~~v~~~g~~L~~~-~-~~~-~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-----~~~f~~~~~e~~~ 120 (213)
T 1cun_A 49 LAAHEPAIQSVLDTGKKLSDD-N-TIG-KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-----YQQFVANVEEEEA 120 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-T-CTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhc-C-CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 333344444555555555543 1 111 12344445555444333333 33455666553 3456679999999
Q ss_pred HHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 479 KSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 479 k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
=+.+.|..+.+..- +......+....+++ +..++...+..++.+......|-..
T Consensus 121 Wl~~~e~~l~~~~~--g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~ 175 (213)
T 1cun_A 121 WINEKMTLVASEDY--GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175 (213)
T ss_dssp HHHHHHHHHTCCCC--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988876532 334444566667777 7778888888888887777666543
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.29 E-value=1.7e+02 Score=32.47 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=7.8
Q ss_pred cCCceEEecc
Q 004913 383 SGDAELVIPL 392 (724)
Q Consensus 383 ~~d~~~vlp~ 392 (724)
+.+..+..|.
T Consensus 74 ~~~~G~~CPT 83 (464)
T 1m1j_B 74 LDELGVLCPT 83 (464)
T ss_dssp STTTCEEEEC
T ss_pred CCCccCcCCC
Confidence 4777888888
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.11 E-value=1.4e+02 Score=27.89 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccccCC--CCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004913 476 LRQKSLEMEWKLKSKQDG--NPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEE 530 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~~--~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~e 530 (724)
|++-......+++..... ..........+..-..+--|+-..+++.+.|.++.++
T Consensus 30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~ 86 (138)
T 3hnw_A 30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIEN 86 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444321 3333333333333333334444444444444444433
No 90
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=53.07 E-value=1.2e+02 Score=26.63 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 542 LvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
+--||.+|.+-...+..++..+-..-.+...-|....... .+-=.|+..|..|+|=
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~-------~~AE~evasLnRriql 97 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA-------TDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 5568999999999999999887766555555444443322 2333577788888773
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.68 E-value=72 Score=28.80 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004913 585 KTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 585 ~~ar~kllhec~iL~~rLq 603 (724)
+..-.+|..||.-||.|++
T Consensus 74 ~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999986
No 92
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=52.12 E-value=88 Score=29.81 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKL 591 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kl 591 (724)
+.|..|+|.=+.=..-|..=...+-....+++..|.+-|++.++....+++|
T Consensus 89 ~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 89 GRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566543332223333333333445566777777777666666666554
No 93
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.65 E-value=71 Score=28.97 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=28.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
++..||++...+..+..++.-+...+...+..=|.|-|...+.|..+=.++..|+.-|.++++.-
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r 85 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 33344444433333333333333333333333333333333444444455556665555555443
No 94
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.21 E-value=58 Score=32.53 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ-------QERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~-------~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
..|.+|+..|..+..+|+++++++.++|.+.|.-|- -||.. +-+.=..+|++|..-+..+.
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~--KIR~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKT--KIRSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHhhhhh
Confidence 345566777888888999999999999999997442 34411 11112235777666655544
No 95
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=51.06 E-value=1.9e+02 Score=28.50 Aligned_cols=189 Identities=16% Similarity=0.101 Sum_probs=97.4
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHH
Q 004913 437 VKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELD 515 (724)
Q Consensus 437 vkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~ 515 (724)
|.+.-..|...-..-+..|+++. .+-+++.++++|-.-+.+.|..+.+..-+.. -...+.+..+++ +..++.
T Consensus 88 l~~~w~~L~~~~~~R~~~Le~~l-----~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d--~~~v~~l~~~~~~f~~el~ 160 (326)
T 3kbt_A 88 VDKHYAGLKDVAEERKRKLENMY-----HLFQLKRETDDLEQWISEKELVASSPEMGQD--FDHVTLLRDKFRDFARETG 160 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCSS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHccccCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555553 2345677888888888888888876432221 122234444555 555665
Q ss_pred H-HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 516 A-TKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHE 594 (724)
Q Consensus 516 ~-~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhe 594 (724)
. -+..++.+......|-...-.+ -..+++-+...-..+..+...+..-+++-+.+. ...+|.++
T Consensus 161 ~~~~~~v~~l~~~~~~L~~~~~~~--------------~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~-~~~~f~~~ 225 (326)
T 3kbt_A 161 AIGQERVDNVNAFIERLIDAGHSE--------------AATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYT 225 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTT--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5 3455666655555543332222 122444444555556666666655555555553 45689999
Q ss_pred HHHHHHHHhhhcccccccccCceecccCChhhHHHhh-------cccchhHHHHHHHHhhhhhh
Q 004913 595 CRILLNRFQACNANLYAEEEDNVILESSSAADALALL-------TSSDDQISLLITEAQLLAED 651 (724)
Q Consensus 595 c~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~da~dlL-------~tsDnrI~lLlaEaqll~~d 651 (724)
|.-+...|+++...+. +.+..|.++...-+.-+ ..-..+|.-|..+++-|...
T Consensus 226 ~~e~~~Wl~ek~~~L~----~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~ 285 (326)
T 3kbt_A 226 GAEILGLIDEKHRELP----EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA 285 (326)
T ss_dssp HHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877663 12223444343333332 23345666677777777543
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.35 E-value=27 Score=37.71 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004913 537 ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLN 600 (724)
Q Consensus 537 ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~ 600 (724)
|++-.|--|++.|+....+|++++.++-.+..+++..|.+|. .-|++|..++.-|+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCC
Confidence 455566677777777777777777777777777776666665 456665444444443
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.27 E-value=75 Score=27.21 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc-ch-hHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913 511 LQELDATKEQLENLSKRYEELEAKSKA-DI-KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL 573 (724)
Q Consensus 511 ~qel~~~~~~~e~l~k~~~elEakska-d~-KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~ 573 (724)
..||+.+-.+++.|..+..+|+++--. +. .-=..++..|-..+.+++++|.+++..+.+||.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777888888888776421 11 0013456778888899999999999999998765
No 98
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=50.04 E-value=2e+02 Score=28.41 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH---HhhHHHHHHHHHHhhHhhhhhhhcHH
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK---QKSKETLQQAILSERERLTQMQWDME 474 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~---~~~ke~lqQa~l~ErEr~t~mqwdme 474 (724)
+.+-|...+.++......-+.|+..-.. .-...+..++.+|...-+... ..-+..|++|.- +-++..+++
T Consensus 157 ~~~~l~~~~~~v~~l~~~a~~L~~~~~~--~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~-----~~~F~~~~~ 229 (323)
T 3edv_A 157 FEHDIQALGTQVRQLQEDAARLQAAYAG--DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD-----KFRFFSMVR 229 (323)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHCCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 4455555666666665555555543221 123456666666665444433 344455666651 235567999
Q ss_pred HHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 475 ELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS 535 (724)
Q Consensus 475 elr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks 535 (724)
+|-.=+.++|..|.+..-. ..-...+....+++ +.++|+..+..++.+.+....|=...
T Consensus 230 ~l~~Wl~~~~~~l~~~~~~--~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~ 289 (323)
T 3edv_A 230 DLMLWMEDVIRQIEAQEKP--RDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARK 289 (323)
T ss_dssp HHHHHHHHHHHHHHTCCCC--CSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999875322 22233455566666 88888888888888887777665443
No 99
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=49.63 E-value=64 Score=31.72 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCC-cccchhhhhHHHHh--HHHHHHHHHHHHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNP-HAESMEESTVKDKN--VLQELDATKEQLENLS 525 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~-~~e~~~~s~~~e~~--~~qel~~~~~~~e~l~ 525 (724)
.++|+||+||++..-+=..|+..-+.+. .....+....++.. +.+.++.+|.+|.-..
T Consensus 106 ~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ 166 (216)
T 2lem_A 106 KWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHS 166 (216)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 3577888888776655555544311110 01111233334443 5555555555554443
No 100
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.16 E-value=36 Score=29.95 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=46.1
Q ss_pred HhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 464 ERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 464 Er~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
..|..|+-+.|..-.+.-+.|.+++..++.....+....++..... +..+++.+.+.+..++..+++-+
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666677777777766666666666677777777 77777888877777776666554
No 101
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=48.49 E-value=98 Score=29.62 Aligned_cols=28 Identities=18% Similarity=-0.026 Sum_probs=17.2
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhh
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLN 424 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLn 424 (724)
.+-.|...+---+.++|....+-+.-|-
T Consensus 25 ~le~v~~~~w~Y~~q~~~~a~~~v~ql~ 52 (165)
T 1gs9_A 25 RWELALGRFWDYLRWVQTLSEQVQEELL 52 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555666666666666666666665544
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.75 E-value=53 Score=30.29 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=6.4
Q ss_pred hcchHHHHHHhhhh
Q 004913 413 KTDMEDLITRLNQE 426 (724)
Q Consensus 413 ktdmEDLiaRLnqe 426 (724)
+.+.+.+|.+|..|
T Consensus 10 ~d~rD~~Ie~Lkre 23 (120)
T 3i00_A 10 KDEKDHLIERLYRE 23 (120)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 34444455554443
No 103
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=47.74 E-value=1.7e+02 Score=27.04 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=77.6
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEV 546 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEV 546 (724)
...++++++-.=+.+++..+.+..-.+.. ...+....+++ +..+|++-++.|+.+.+...+|=......
T Consensus 8 ~F~~~~~dl~~Wl~~~~~~l~~~e~~~d~--~~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~-------- 77 (185)
T 3lbx_B 8 RFFSMARDLLSWMESIIRQIETQERPRDV--SSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA-------- 77 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCC--CC--SSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCCCH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCc--------
Confidence 34577888888888888888765332222 22344556666 88899999999999998888775443211
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 547 KFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
..+++.-+.+....+..+.....+-+++-+.+.. ...|.++|..+-+=|..+-.-+
T Consensus 78 ------~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~-l~~F~~d~~~~~~Wl~~~e~~L 133 (185)
T 3lbx_B 78 ------SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLE-VCQFSRDASVAEAWLIAQEPYL 133 (185)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhHhhh
Confidence 1234444555555555565555554555454432 3468888888888777765443
No 104
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=47.65 E-value=45 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Q 004913 401 VLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (724)
Q Consensus 401 vl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~ 448 (724)
.|..++..+.+.|.+++.++.++.+-+.=|+|--.|++|.|.-.....
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999999999999999998887654
No 105
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.64 E-value=92 Score=34.66 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhcchHHHHHHhhh-hhhHHHH---HHhhhhhhHH
Q 004913 403 LTMERRLVTAKTDMEDLITRLNQ-EMTVKDY---LMTKVKDLEV 442 (724)
Q Consensus 403 ~t~~~rl~~aktdmEDLiaRLnq-e~avk~f---L~tKvkDlE~ 442 (724)
.+.|+-+...=-+|||.+.+|.+ ...+++| |.++++..|.
T Consensus 92 ~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 92 LKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccc
Confidence 34555555555556666666643 3334444 4444444433
No 106
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=47.57 E-value=1.3e+02 Score=25.43 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
+..+.+.+.+.++.+..+..+.|... .-+--||.+|-+-...|..+|..+-..-.+...-|..+.
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444322 234578999999999999999988777766666655544
No 107
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.46 E-value=37 Score=29.72 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=36.6
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHH
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQE 559 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~e 559 (724)
++=++=++ +.+||..++...-+++++..+.|++. +-|.-||+.||....+|+.+
T Consensus 20 eaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn----~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 20 EEEVLTRQSLSREMEAIRTDNQNFASQLREAEARN----RDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcc
Confidence 33345556 77788888888888888887766654 34677777777776666544
No 108
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=47.33 E-value=35 Score=36.91 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=6.0
Q ss_pred cccCceecccC
Q 004913 612 EEEDNVILESS 622 (724)
Q Consensus 612 ee~~~~~~~~s 622 (724)
+|++|..+..-
T Consensus 118 ~e~~n~~~~~~ 128 (425)
T 2dq3_A 118 DEKDNVEVRRW 128 (425)
T ss_dssp SGGGCEEEEEE
T ss_pred CccCcEEEEEe
Confidence 45666655543
No 109
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.20 E-value=26 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=32.2
Q ss_pred hhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004913 500 MEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK 536 (724)
Q Consensus 500 ~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk 536 (724)
++..+++..+ +-.|+.-+++++..|+++..+||+.+.
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888888 888999999999999999999998653
No 110
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.94 E-value=53 Score=28.46 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=42.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANL 609 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~ 609 (724)
|++.||++...+..+..+..-+...+...+..=|.|-|...+.|..+=.|+..|+.=+-++++.-
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45667777766666666666666666666666666666666666666667777776666666543
No 111
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=45.90 E-value=1.8e+02 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=16.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004913 561 SQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILL 599 (724)
Q Consensus 561 ~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~ 599 (724)
.+....|.++|..|..=..+.+.....+..|..+.+-|.
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 112
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=45.69 E-value=2.7e+02 Score=28.56 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKS---KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKT 586 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEaks---kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ 586 (724)
...++..+++.++.+-++.+..+.+. +++--+-.|++..++.....++++...+-.+ -... ...+..
T Consensus 155 ~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~---Y~~~-------v~~~n~ 224 (350)
T 3aco_A 155 KLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK---YEKS-------LKELDQ 224 (350)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHH
Confidence 33455555555555555555555432 2222222355555555544444444433222 1111 222334
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 004913 587 VREKLLHECRILLNRFQACNA 607 (724)
Q Consensus 587 ar~kllhec~iL~~rLqEC~~ 607 (724)
.|..+..+...+++.+|+|..
T Consensus 225 ~~~~~~~~~~~~~~~~Q~lee 245 (350)
T 3aco_A 225 GTPQYMENMEQVFEQCQQFEE 245 (350)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777764
No 113
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=45.43 E-value=2.3e+02 Score=27.80 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHH
Q 004913 444 LETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLE 522 (724)
Q Consensus 444 Le~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e 522 (724)
|...-..-+..|++|.- +-+..-+++++-.=+.+.|..|.+.. -+......+....+++ +.+++...+..++
T Consensus 200 L~~~~~~R~~~L~~~~~-----~~qf~~~~~~~~~Wl~~~e~~l~~~~--~g~~~~~~~~ll~~h~~~~~el~~~~~~v~ 272 (322)
T 1u4q_A 200 LKQLAAARGQRLEESLE-----YQQFVANVEEEEAWINEKMTLVASED--YGDTLAAIQGLLKKHEAFETDFTVHKDRVN 272 (322)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCCC--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555666543 34566789999999999998887642 2333334455666666 7777777777777
Q ss_pred HHHHHHHHHhhh
Q 004913 523 NLSKRYEELEAK 534 (724)
Q Consensus 523 ~l~k~~~elEak 534 (724)
.|.+....|=..
T Consensus 273 ~l~~~~~~L~~~ 284 (322)
T 1u4q_A 273 DVCANGEDLIKK 284 (322)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 776666655443
No 114
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=44.76 E-value=1.1e+02 Score=28.09 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~ 572 (724)
|......++-.++.+..+|......+-+.+-.|-+||-.||..+..|+.-+-..=..--++|+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 556666666777777777777777777778888999999998888887766554444444443
No 115
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=44.62 E-value=86 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913 565 NEKSKTEELLQQERQTHNHMKTVREKLL 592 (724)
Q Consensus 565 ~eK~e~E~~l~~Er~~~e~~~~ar~kll 592 (724)
..|..+|+.|+.|+=....|.+=.+.+|
T Consensus 39 ~~k~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1uix_A 39 AIKAQFEKQLLTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999977777766555554
No 116
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.11 E-value=24 Score=30.62 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=23.9
Q ss_pred chhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 499 SMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 499 ~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
....++.+|+. |..++..+.+..+.|.+...++|.+
T Consensus 42 ~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 42 EQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33456666666 5555777777777777777777765
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.72 E-value=1.1e+02 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
|+-.|+=+|..|+-...++...+.++-++-.+-
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444333
No 118
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.07 E-value=21 Score=31.28 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004913 513 ELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elE 532 (724)
.|.++++.+-.|+++.+.-+
T Consensus 48 KLKsTK~El~~Lq~qLe~kd 67 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKD 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhH
Confidence 33444444444444444433
No 119
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=43.06 E-value=1.4e+02 Score=29.80 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=11.1
Q ss_pred hhhhcHHHHHHHHHHHHHHh
Q 004913 468 QMQWDMEELRQKSLEMEWKL 487 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~l 487 (724)
.++|+||++|+++.-+=..|
T Consensus 107 ~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 107 KWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 44566666666555544444
No 120
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=42.94 E-value=2.2e+02 Score=29.77 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=17.3
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccc
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
+.++|+||+||.++.-|-..|+..
T Consensus 132 ~~l~~~~eelr~kL~Py~~EL~~~ 155 (307)
T 2l7b_A 132 AMLGQSTEELRVRLASHLRKLRKR 155 (307)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888887777666443
No 121
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=42.42 E-value=1.9e+02 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=16.6
Q ss_pred HHHhhhcccchhHHH-------HHHHHHhhh
Q 004913 529 EELEAKSKADIKVLV-------KEVKFLRSS 552 (724)
Q Consensus 529 ~elEakskad~KvLv-------KEVKsLR~s 552 (724)
-.||-+...|+|.+. ||.|..|+.
T Consensus 109 ~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~e 139 (253)
T 2d1l_A 109 NPLQEQMEEWKKVANQLDKDHAKEYKKARQE 139 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777 777666655
No 122
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.35 E-value=1.7e+02 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 439 DLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 439 DlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
|||.-++-.+.+-..+++ +|..||=+++++|.|.+.+|..+-.|
T Consensus 117 eLe~~i~~lk~~V~~q~~--------~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ--------RINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554443 45668888999999999999998544
No 123
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.56 E-value=1.6e+02 Score=25.00 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE 566 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e 566 (724)
|++..+.+-.+|.....++|.....+.+-+-..|-.|-.....+|++..+.+.|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~E 55 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLRE 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666555544444444444444444444444444333
No 124
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.95 E-value=1.4e+02 Score=32.51 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
.+..|..-++++++...+|++.+.+.+
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444445555555555555555443
No 125
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=40.81 E-value=2.5e+02 Score=26.92 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHH
Q 004913 436 KVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQEL 514 (724)
Q Consensus 436 KvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel 514 (724)
++.+||..|..+ ..+..+..-=..| +.=|++..-...-..|.++...+.+--.+.-...++..--+ .-|..
T Consensus 1 r~~~lE~qlkea---ae~ad~KyeEvaR-----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrE 72 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLENEVAR-----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKE 72 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHh----------hhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHH
Q 004913 515 DATKEQLENLSKRYEELE----------AKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKT 570 (724)
Q Consensus 515 ~~~~~~~e~l~k~~~elE----------akskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~ 570 (724)
+...+++..|+.++.+.| ++--.++.-|-.++..=+.....+.++|.+.+.+-..+
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 126
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.58 E-value=86 Score=26.99 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 004913 515 DATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 515 ~~~~~~~e~l~k~~~elEak 534 (724)
+..+.+..+|.....++|+.
T Consensus 6 e~L~~q~~~Le~~l~e~E~~ 25 (86)
T 1x8y_A 6 SQLQCQLAAKEAKLRDLEDS 25 (86)
T ss_dssp ------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 127
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.46 E-value=2.1e+02 Score=25.92 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQ 562 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~ 562 (724)
||+..+.+-.+|.....+.|..- ..+++.++....+|+.+|.+
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~-------~~~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRG-------ELALKDARNKLAELEEALQK 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444433 33444555555555544443
No 128
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=39.84 E-value=2.8e+02 Score=27.22 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 004913 692 KQVNSVLR 699 (724)
Q Consensus 692 kq~Nsv~r 699 (724)
+-+...++
T Consensus 261 ~D~~~fi~ 268 (301)
T 2efk_A 261 NDSHVLIE 268 (301)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33444443
No 129
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=39.33 E-value=65 Score=31.64 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhh
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQ 425 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnq 425 (724)
+-.|...+--=+.++++-.++.+.-|-+
T Consensus 7 ~e~v~~~~w~Y~~~l~~~a~~~v~~l~~ 34 (216)
T 2lem_A 7 WDKVKDFANVYVDAVKDSGRDYVSQFES 34 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555566666555555554443
No 130
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.98 E-value=17 Score=40.89 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccc
Q 004913 442 VELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 442 ~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
.|+..+|...||-=.+ =-.||+++.--.=-=++.-++..|||..|+..
T Consensus 300 ~e~qqm~~~a~e~~~~-~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 347 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLA-KQAQREKLQLEIAARERAEKKQQEYQDRLRQM 347 (575)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555554443222 12345555443333344444555555555544
No 131
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=38.96 E-value=56 Score=26.84 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
|-||-=|=+||-+..+|+||..++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m 29 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKM 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877654
No 132
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.53 E-value=2.2e+02 Score=26.24 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhcccc
Q 004913 412 AKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQ 491 (724)
Q Consensus 412 aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~ 491 (724)
++.+..+|-+||...+-+=.=-+..+..|..+++..+... |+|.- |+++..=|..--+.+
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l------------E~I~v-------LkaQv~IY~~DF~aE- 81 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------ETVPV-------LKAQADIYKADFQAE- 81 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------THHHH-------HHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH-------HHHHHHHHHHHHccc-
Q ss_pred CCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Q 004913 492 DGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELE 532 (724)
Q Consensus 492 ~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elE 532 (724)
+.-.+ +-++.+...+||+.|+++..+|+
T Consensus 82 -------------RadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 82 -------------RHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -------------hhhHHHHHhHHHHHHHHHHHHHHHHHhcC
No 133
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=38.42 E-value=2.6e+02 Score=26.32 Aligned_cols=164 Identities=18% Similarity=0.110 Sum_probs=88.9
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHH-HHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDA-TKEQLENLSKRYEELEAKSKADIKVLVKE 545 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~-~~~~~e~l~k~~~elEakskad~KvLvKE 545 (724)
++.++.+++-.=+.+.|..+.+..-+... ...+....+++ +..++.+ -+..++.+.....+|-...-.+.
T Consensus 5 ~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl--~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~------ 76 (218)
T 3edu_A 5 QLKRETDDLEQWISEKELVASSPEMGQDF--DHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEA------ 76 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTH------
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCCH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCH------
Confidence 45667777777777788777764222111 11233334444 5555555 34555555555554443322221
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCChh
Q 004913 546 VKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSAA 625 (724)
Q Consensus 546 VKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~~ 625 (724)
..+++-++..-..+..+..+...-+++-+.+. ...+|.++|.-+...|++-...+. ++ +--|..+..
T Consensus 77 --------~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~F~~~~~e~~~Wl~ek~~~l~---~~-~g~dl~~v~ 143 (218)
T 3edu_A 77 --------ATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEILGLIDEKHRELP---ED-VGLDASTAE 143 (218)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC---------------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC---Cc-cCCCHHHHH
Confidence 23444455556667777777766555666564 457899999999999999665553 11 222332221
Q ss_pred h------HH-HhhcccchhHHHHHHHHhhhhhhh
Q 004913 626 D------AL-ALLTSSDDQISLLITEAQLLAEDS 652 (724)
Q Consensus 626 d------a~-dlL~tsDnrI~lLlaEaqll~~d~ 652 (724)
. ++ .-|+....+|.-|..+|+-|...+
T Consensus 144 ~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~~~ 177 (218)
T 3edu_A 144 SFHRVHTAFERELHLLGVQVQQFQDVATRLQTAY 177 (218)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 1 11 223445567777777777775543
No 134
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.15 E-value=54 Score=26.65 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
-|..+|..|-..+.+|+.+++.+-.++..+..+|.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666655553
No 135
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.78 E-value=58 Score=32.44 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=22.6
Q ss_pred hhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004913 502 ESTVKDKN-VLQELDATKEQLENLSKRYEELEAKS 535 (724)
Q Consensus 502 ~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaks 535 (724)
++++.|+. |-++|+...+.++.|+++...+++++
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66777777 77777766666666666666665555
No 136
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.65 E-value=1.1e+02 Score=29.84 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhHH
Q 004913 514 LDATKEQLENLSKRYEELEAKSK---ADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 514 l~~~~~~~e~l~k~~~elEaksk---ad~KvLvKEVKsLR~s~~~ 555 (724)
+..+++++...++++.++=++.+ +.++-|++|+-.||.+...
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333 3455566666666665443
No 137
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.33 E-value=54 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
..-|..+|+.|...+.+|+.++++.-.|...+..+|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555544444444443
No 138
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.21 E-value=53 Score=35.63 Aligned_cols=57 Identities=25% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQA 604 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqE 604 (724)
-|-.|++.||....+|+++..+...+..+++.-|.+ ...-|++|..++--|+..++.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-------SNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 344555555555555555555555444444443333 235667766666666655443
No 139
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.73 E-value=1.3e+02 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913 565 NEKSKTEELLQQERQTHNHMKTVREKLL 592 (724)
Q Consensus 565 ~eK~e~E~~l~~Er~~~e~~~~ar~kll 592 (724)
..|..+++.|+.|+=....|.+=.+.+|
T Consensus 39 ~~~~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1s1c_X 39 NLKAAFEKNINTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999877777766555554
No 140
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=35.02 E-value=76 Score=25.62 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=30.7
Q ss_pred hHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Q 004913 397 KLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (724)
Q Consensus 397 kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~ 448 (724)
.++..+..++.-|..+|.||+.. ++| -.+.|..|++ ||.|++|-+
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q----~~e--Yq~LlniK~~-Le~EIatYR 48 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARL----KKL--VGDLLNVKMA-LDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHH-hHHHHHHHH
Confidence 35677888888888888887644 333 2566777775 677776654
No 141
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=34.75 E-value=56 Score=28.39 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=6.4
Q ss_pred hHHHHHHhhhhhhHH
Q 004913 428 TVKDYLMTKVKDLEV 442 (724)
Q Consensus 428 avk~fL~tKvkDlE~ 442 (724)
+.++.++.|++++|.
T Consensus 6 ~e~e~~~~klq~~E~ 20 (79)
T 3cvf_A 6 AEREETQQKVQDLET 20 (79)
T ss_dssp ----CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555566665554
No 142
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.30 E-value=48 Score=26.54 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=20.0
Q ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004913 506 KDKN-VLQELDATKEQLENLSKRYEELEAK 534 (724)
Q Consensus 506 ~e~~-~~qel~~~~~~~e~l~k~~~elEak 534 (724)
.+-+ |.+|+..+|.+++.|.++++|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 6677777777777777777777664
No 143
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.02 E-value=2.7e+02 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
||+..+.+-.+|.....+.|..-- .+++.++....+|..+|.
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~-------~~l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYC-------MQLAQIQEMIGSVEEQLA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433 334444444444444443
No 144
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=33.39 E-value=1.1e+02 Score=27.79 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=33.0
Q ss_pred hhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 501 EESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 501 ~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
|+.+++|.= |...+..+.+.-..|++.-.+. -+.+.-|.-||..||+.+..|.+|-.
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRL----DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4334444433333333333333 34566788999999999998888754
No 145
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=32.96 E-value=5e+02 Score=28.08 Aligned_cols=62 Identities=23% Similarity=0.168 Sum_probs=35.6
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEELEAK---SKADIKVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~elEak---skad~KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
.+..+.+ ..++|..+++.++...++++....+ ++++..+=-|++..++......++++..+.
T Consensus 140 k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~ 205 (486)
T 3haj_A 140 KAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTK 205 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5667777777777777766665433 222333334677777766666655554443
No 146
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.79 E-value=2e+02 Score=25.17 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHH
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKS 568 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~ 568 (724)
=|..||+-||--..+|..|..||=+.-.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777777777777766654433
No 147
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.79 E-value=2e+02 Score=32.70 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HH
Q 004913 433 LMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VL 511 (724)
Q Consensus 433 L~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~ 511 (724)
|+.|-|.+|+| +..+|..+|+.-..+|+--++|--|+.=.+-++|--..|+.+ ...|.+ ++
T Consensus 482 l~~~~k~~~~~-----~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k-------------me~~~~~~~ 543 (592)
T 1f5n_A 482 LTEKEKEIEVE-----RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK-------------MENDRVQLL 543 (592)
T ss_dssp SCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHH
Q 004913 512 QELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~ 555 (724)
+|.+.+- =+.|+.+..=+++..+.+.+.|-+|+..|+.++.+
T Consensus 544 ~e~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~~ 585 (592)
T 1f5n_A 544 KEQERTL--ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585 (592)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 148
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=32.72 E-value=1.8e+02 Score=28.45 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHHHhccc--cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc-----cchhHHH
Q 004913 472 DMEELRQKSLEMEWKLKSK--QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK-----ADIKVLV 543 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~--~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk-----ad~KvLv 543 (724)
++|.+.+++.++...++-. +-+..+.+- ..+++|.+ -.+-++|+.+-+.-..++...-|--++ -++----
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y--~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~ 88 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEY--TRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCH
Confidence 4677888888877666544 555555555 66667777 556677777666666665543332111 0111112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+|+.+|......|+.-|.....-|..++.-|.
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~ 120 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELR 120 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555544444444
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.70 E-value=1.7e+02 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=17.0
Q ss_pred HHHHHhhHhhhhhhhcHHHHHHHH
Q 004913 457 QAILSERERLTQMQWDMEELRQKS 480 (724)
Q Consensus 457 Qa~l~ErEr~t~mqwdmeelr~k~ 480 (724)
.....||.|...|.--+++||.-.
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lv 28 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSV 28 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHC
Confidence 356789999988766666666543
No 150
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=31.41 E-value=5e+02 Score=27.59 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 004913 670 TRTDNELREVIADILVDNAKLRKQVNSVLRRALLFRNNESPPPSS 714 (724)
Q Consensus 670 ~~~d~elrk~lad~~idna~LRkq~Nsv~r~al~~~~~~~~~~~~ 714 (724)
..+|.+-+++|-+|+.+.+++-..++.+-|.-+.. +-.+|-|+.
T Consensus 316 ~~~dp~~~~i~~~i~~~l~~~e~~~~~l~~~~~~~-~~~~~~~~~ 359 (365)
T 3fse_A 316 MYTDPIATAIFKEIYKDLVKYEQRLVSLYRTRTNA-TVQPPKPTT 359 (365)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSCCCCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCc
Confidence 34899999999999999999999999999999966 445555654
No 151
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=31.04 E-value=7.8e+02 Score=29.72 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCceecccCCh------hhHH
Q 004913 555 GLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLYAEEEDNVILESSSA------ADAL 628 (724)
Q Consensus 555 ~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~~ee~~~~~~~~ss~------~da~ 628 (724)
+|.+.-..+.+.-.+-+..|++|-+|.|+-..-..+|..+|....+.|+|=..-+..+. +--|..+. .+|+
T Consensus 855 dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s~d---~g~dL~~Vqal~KKhea~ 931 (1010)
T 1g8x_A 855 EIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNE---TGDSITAVQAKLKNLEAF 931 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSCC---SCCSTTTTGGGTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHHH
Confidence 45555555555555667789999888888878889999999999999998655444322 22222222 2444
Q ss_pred Hh-hcccchhHH-HHHHHHhhhhhhhhh
Q 004913 629 AL-LTSSDDQIS-LLITEAQLLAEDSKA 654 (724)
Q Consensus 629 dl-L~tsDnrI~-lLlaEaqll~~d~e~ 654 (724)
+- |+.-.+||. -|.+.+|-|.+++..
T Consensus 932 e~dl~a~e~ri~~~l~~~a~eL~~~~y~ 959 (1010)
T 1g8x_A 932 DGECQSLEGQSNSDLLSILAQLTELNYN 959 (1010)
T ss_dssp TTTTTHHHHTHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 555567887 777888888776654
No 152
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=30.71 E-value=77 Score=30.84 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=14.5
Q ss_pred hhhhhcHHHHHHHHHHHHHHhccc
Q 004913 467 TQMQWDMEELRQKSLEMEWKLKSK 490 (724)
Q Consensus 467 t~mqwdmeelr~k~~e~E~~lks~ 490 (724)
..++|++|++|.++.=+=..|+..
T Consensus 124 ~~l~~~~Eelr~~L~Py~eelr~k 147 (191)
T 1nfn_A 124 AMLGQSTEELRVRLASHLRKLRKR 147 (191)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345667777777766665555443
No 153
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.29 E-value=2.6e+02 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 544 KEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
+.|-.|+....+|+.||.+.... +.+.+-||.-|+..+.+|
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~---------------------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHL---------------------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665433 344556777777666665
No 154
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=30.02 E-value=95 Score=35.49 Aligned_cols=43 Identities=19% Similarity=0.075 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc--------ccchhHHHHHHHHHhhhhH
Q 004913 512 QELDATKEQLENLSKRYEELEAKS--------KADIKVLVKEVKFLRSSQI 554 (724)
Q Consensus 512 qel~~~~~~~e~l~k~~~elEaks--------kad~KvLvKEVKsLR~s~~ 554 (724)
++...+++++..|.+...++-.+. .-+..+|-+|...-++.|.
T Consensus 59 ~~~~~l~~~~~~l~~~R~~~~~~~~~~~~~~~~lq~~ll~~eL~~WkrrQq 109 (575)
T 1bf5_A 59 QEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQ 109 (575)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333334455555554444443222 2234455556665555443
No 155
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.01 E-value=1.9e+02 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHhhhhHH
Q 004913 539 IKVLVKEVKFLRSSQIG 555 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~ 555 (724)
+..|..|...|+..+..
T Consensus 50 ~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 50 REELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 156
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.55 E-value=2.2e+02 Score=24.86 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHH
Q 004913 452 KETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKR 527 (724)
Q Consensus 452 ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~ 527 (724)
-...||||=+ |+-+|-.++||+.|-.......+... ...+....|++ +.+|....++.+..|--+
T Consensus 12 E~KIq~avdt----I~lLqmEieELKekN~~L~~e~~e~~-------~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 12 EAKVQQAIDT----ITLLQMEIEELKEKNNSLSQEVQNAQ-------HQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777744 89999999999988766655444321 22344666666 777777777666665444
No 157
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.46 E-value=1.2e+02 Score=27.62 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004913 539 IKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQ 576 (724)
Q Consensus 539 ~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~ 576 (724)
+.-|-.|+..|+.+...|++|-+-|..--.++|-++|.
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666655554
No 158
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.00 E-value=1.6e+02 Score=32.86 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.7
Q ss_pred ccC-ceecc
Q 004913 613 EED-NVILE 620 (724)
Q Consensus 613 e~~-~~~~~ 620 (724)
|+| |..|.
T Consensus 155 e~~~n~~v~ 163 (484)
T 3lss_A 155 EETGNTVVR 163 (484)
T ss_dssp HHHHCEEEE
T ss_pred cccCcEEEE
Confidence 444 55544
No 159
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.84 E-value=1e+02 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=35.1
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhh
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDL 440 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDl 440 (724)
+-|.-+...|.+-...++.|||+=|++|++++++=|.+..+.|-|
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445556677777888899999999999999999988887776655
No 160
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.83 E-value=2.8e+02 Score=23.91 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 004913 436 KVKDLEVELETT 447 (724)
Q Consensus 436 KvkDlE~eLe~t 447 (724)
++++++.+++..
T Consensus 4 ~~~~~~~~~~~~ 15 (112)
T 1l8d_A 4 LLEELETKKTTI 15 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 345555554443
No 161
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.53 E-value=2.9e+02 Score=25.38 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 004913 545 EVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQ 603 (724)
Q Consensus 545 EVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLq 603 (724)
+||.|-....+|+.+|+..+.++.++|.-+++-++...........-+-.-..+..=||
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 162
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=28.47 E-value=1.6e+02 Score=25.94 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred HhhhhHHHHHHHHHHHHhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 549 LRSSQIGLKQELSQMLNEKSKTEELLQQER---QTHNHMKTVREKLLHECRILLNRFQACNAN 608 (724)
Q Consensus 549 LR~s~~~lk~el~~~~~eK~e~E~~l~~Er---~~~e~~~~ar~kllhec~iL~~rLqEC~~~ 608 (724)
|-.....|++++..-|+-|.=.|+++..=. .-.+++..--+..=..+..|+++|+|-|..
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334445677788888899999998887653 333444444555567788999999997764
No 163
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=28.11 E-value=1.1e+02 Score=28.95 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=34.9
Q ss_pred hhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH----HhhhcccchhHHH
Q 004913 468 QMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEE----LEAKSKADIKVLV 543 (724)
Q Consensus 468 ~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~~~qel~~~~~~~e~l~k~~~e----lEakskad~KvLv 543 (724)
+.+.-++-||-+...||..||-++ +.+..|+- .|...+--++-|=++|++ ..+.|..-+++
T Consensus 52 q~~~~~d~L~lQ~esmeaalkmEr----------~~~~eEKr---kLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~-- 116 (130)
T 3cl3_D 52 QHSVQVDQLRMQGQSVEAALRMER----------QAASEEKR---KLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGM-- 116 (130)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--
Confidence 356677889999999999999872 33444555 233344445556666666 55554433332
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q 004913 544 KEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 544 KEVKsLR~s~~~lk~el~~~ 563 (724)
+..+|++.|.++
T Consensus 117 --------ql~dL~qqLq~a 128 (130)
T 3cl3_D 117 --------QLEDLKQQLQQA 128 (130)
T ss_dssp --------------------
T ss_pred --------hHHHHHHHHHHh
Confidence 455566655543
No 164
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=28.09 E-value=3.8e+02 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHhhhhcchHHHHHHhhh--hhhHHHHHHhhh-hhhHHHHHHH
Q 004913 408 RLVTAKTDMEDLITRLNQ--EMTVKDYLMTKV-KDLEVELETT 447 (724)
Q Consensus 408 rl~~aktdmEDLiaRLnq--e~avk~fL~tKv-kDlE~eLe~t 447 (724)
.+..+++-+-|-++-+.+ ..+|.++..+++ ++|-.-|..+
T Consensus 25 ~le~v~~~~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ 67 (165)
T 1gs9_A 25 RWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDET 67 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466677777777777754 377777777776 6555544433
No 165
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.51 E-value=2.9e+02 Score=23.63 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHhhhhhhHHHHHHHHHhhHHHHH--HHHHHhhHhhhhhhhcHH-HHHHHHHHHH
Q 004913 433 LMTKVKDLEVELETTKQKSKETLQ--QAILSERERLTQMQWDME-ELRQKSLEME 484 (724)
Q Consensus 433 L~tKvkDlE~eLe~t~~~~ke~lq--Qa~l~ErEr~t~mqwdme-elr~k~~e~E 484 (724)
+..++..||.+|..+|......++ |..|+ ..|.+|+| .-.++++|=|
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln-----vK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLD-----IKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHcCC
Confidence 344556667777777666544433 34444 44555555 3445555544
No 166
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.32 E-value=1.9e+02 Score=27.42 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHH
Q 004913 396 HKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERLTQMQWDMEE 475 (724)
Q Consensus 396 ~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmee 475 (724)
.+++.=+..++..+....+++.+|-.+|..|-+-|.=.-...+.+|.|||..-..-=+.--.-|-++|----..+=-.+.
T Consensus 28 e~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~ 107 (135)
T 2e7s_A 28 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKR 107 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhccccC
Q 004913 476 LRQKSLEMEWKLKSKQD 492 (724)
Q Consensus 476 lr~k~~e~E~~lks~~~ 492 (724)
|+++..+.+.-|.+.|.
T Consensus 108 L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 108 LTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHH
No 167
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=27.26 E-value=8.3e+02 Score=29.32 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=12.6
Q ss_pred HhhHHHHHHHHHHhhHhhhh
Q 004913 449 QKSKETLQQAILSERERLTQ 468 (724)
Q Consensus 449 ~~~ke~lqQa~l~ErEr~t~ 468 (724)
|+.++.||++|--==|+.|+
T Consensus 648 qrtrd~LqkSVqlAiEItT~ 667 (861)
T 2zuo_A 648 QRTRDALQRSVQLAIEITTN 667 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 56677777777543455555
No 168
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=27.25 E-value=4.5e+02 Score=25.71 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHH
Q 004913 450 KSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRY 528 (724)
Q Consensus 450 ~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~ 528 (724)
.-+..|+++. .+-++..+++++-.=+.+.|..+.+..-++ .-...+....+++ +..+|...+..++.+....
T Consensus 100 ~R~~~Le~~~-----~l~~f~~~~~~~~~Wl~e~e~~~~~~~~g~--dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g 172 (322)
T 1u4q_A 100 ARRAKLNESH-----RLHQFFRDMDDEESWIKEKKLLVSSEDYGR--DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTG 172 (322)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455444 256677899999999999998887753332 2233355566666 7778888877888887777
Q ss_pred HHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 529 EELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNAN 608 (724)
Q Consensus 529 ~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~ 608 (724)
..|-...-.+ -..+++-+...-..+..+......-+++-+.+.. ...|..++.-+..=|.+.-..
T Consensus 173 ~~L~~~~~~~--------------~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~-~~qf~~~~~~~~~Wl~~~e~~ 237 (322)
T 1u4q_A 173 KKLSDDNTIG--------------KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTL 237 (322)
T ss_dssp HHHHHTTCSC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7664332221 1233344444444555555555544444444432 457777887777777776543
No 169
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=27.14 E-value=4.1e+02 Score=25.21 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCcc-----------cchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcc---
Q 004913 472 DMEELRQKSLEMEWKLKSKQDGNPHA-----------ESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSK--- 536 (724)
Q Consensus 472 dmeelr~k~~e~E~~lks~~~~~~~~-----------e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEaksk--- 536 (724)
+||.||.++++-|-.|......-+-. |...+-....+. ..++|..+++..|.|.|+...|=-..+
T Consensus 7 Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aH 86 (136)
T 3ter_A 7 EMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLAT 86 (136)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeec
Confidence 35667777777776666522222111 111222233334 556677777777777766443321111
Q ss_pred ---cchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 004913 537 ---ADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEEL 573 (724)
Q Consensus 537 ---ad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~ 573 (724)
...--+=..|=++++...++..++.+-+.-+.++|.+
T Consensus 87 s~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 87 GAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122223344445555555555555555555554
No 170
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=26.99 E-value=55 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=14.9
Q ss_pred HHHHHHhhHhhhhhhhcHHHHHHHHHHHHHHhc
Q 004913 456 QQAILSERERLTQMQWDMEELRQKSLEMEWKLK 488 (724)
Q Consensus 456 qQa~l~ErEr~t~mqwdmeelr~k~~e~E~~lk 488 (724)
+++++. ++-.+|-=.+++||..++++|..+|
T Consensus 7 ~~~~~~--~k~~ei~~~v~~lr~~~q~~e~~ik 37 (596)
T 1bg1_A 7 TAAVVT--EKQQMLEQHLQDVRKRVQDLEQKMK 37 (596)
T ss_dssp ---CCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3334444456666666666666443
No 171
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.92 E-value=68 Score=35.17 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQEL 560 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el 560 (724)
++.+++.+|.+-..++|+...+- +.+.+..-|..|+|.|+....+|++++
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRR-KKGEPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TSCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444455544321 222344445555555544444443333
No 172
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.73 E-value=3.3e+02 Score=23.92 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEE 572 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~ 572 (724)
+..+|..+++.=..|-++..++|. ++..|..|++.|+.....|.++=.++.++.+....
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEk----e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ 67 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEK----NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKR 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 555556666555666666666653 45667777777777777777777777777666543
No 173
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=26.52 E-value=4.9e+02 Score=25.92 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKS---KADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKT 586 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEaks---kad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ 586 (724)
..+++..+++.++.+-++.+.++.+. ++|--+--||+..++.....++++...+-.+ -...|+ .+..
T Consensus 155 ~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~---Y~~~v~-------~~n~ 224 (312)
T 3abh_A 155 KLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK---YEKSLK-------ELDQ 224 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHH---HHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHH
Confidence 55566777777777777777665432 2222222366666666666665555554222 222221 2334
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 004913 587 VREKLLHECRILLNRFQACNA 607 (724)
Q Consensus 587 ar~kllhec~iL~~rLqEC~~ 607 (724)
.|..+..+...+++.+|+|..
T Consensus 225 ~~~~~~~~~~~~~~~~Q~lee 245 (312)
T 3abh_A 225 GTPQYMENMEQVFEQCQQFEE 245 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466677777778888887764
No 174
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.36 E-value=82 Score=35.14 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
++.+++.+|.+...++|+...+ .+++.+..-|..|+|.|+....+|++++.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444454444455544443 22333444455555555544444444433
No 175
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.04 E-value=94 Score=26.25 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 004913 519 EQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563 (724)
Q Consensus 519 ~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~ 563 (724)
+.+..|..+..++|.... -|..|+-.||.....|..|+..+
T Consensus 29 ~~i~~LE~~v~~le~~~~----~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS----STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555554332 26788888888888888887653
No 176
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=25.92 E-value=84 Score=25.04 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.7
Q ss_pred hhhhcchHHHHHHhhhh--hhHHHHHHhhhhhhHHHHHHH
Q 004913 410 VTAKTDMEDLITRLNQE--MTVKDYLMTKVKDLEVELETT 447 (724)
Q Consensus 410 ~~aktdmEDLiaRLnqe--~avk~fL~tKvkDlE~eLe~t 447 (724)
...+.|.+.|-+=|.+. --||++|+..++.+|.++...
T Consensus 7 eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNK 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777766665 469999999999999999843
No 177
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.69 E-value=98 Score=25.10 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQELSQMLNEKSKTE 571 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E 571 (724)
.-||+-|-.||..+..|++||+.--..-+.+|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 45899999999999999999976554444443
No 178
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.52 E-value=2.2e+02 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=11.8
Q ss_pred hHhhhhhhhcHHHHHHHH
Q 004913 463 RERLTQMQWDMEELRQKS 480 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~ 480 (724)
||.|.|.|=+|+-||+--
T Consensus 17 ~E~~~q~qaEl~sLrrT~ 34 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTE 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 566777777777766543
No 179
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.17 E-value=1.6e+02 Score=31.82 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhccc
Q 004913 592 LHECRILLNRFQACNAN 608 (724)
Q Consensus 592 lhec~iL~~rLqEC~~~ 608 (724)
-.+-+.|+|.+||-.=|
T Consensus 44 ~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 44 NMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34455566666665443
No 180
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.99 E-value=4.3e+02 Score=28.95 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH--------------HHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK--------------FLRSSQIGLKQELSQMLNEKSKTEELLQ 575 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK--------------sLR~s~~~lk~el~~~~~eK~e~E~~l~ 575 (724)
+...++.+++.|..+++-+.+.-.-.+.=+-+|.+=+| .||..+..||.-+..-+..-.-|+.+|.
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77788888888888888777766655554444444443 4666666666665555555555555555
Q ss_pred HHHHhhhh
Q 004913 576 QERQTHNH 583 (724)
Q Consensus 576 ~Er~~~e~ 583 (724)
..+-+..+
T Consensus 145 ~q~~kiqR 152 (390)
T 1deq_A 145 DQLVDMKR 152 (390)
T ss_pred HHHHHHHH
Confidence 54433333
No 181
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.93 E-value=1.5e+02 Score=23.62 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhHHHH
Q 004913 543 VKEVKFLRSSQIGLK 557 (724)
Q Consensus 543 vKEVKsLR~s~~~lk 557 (724)
..||..|+.....|+
T Consensus 42 ~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 42 QSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 182
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=24.40 E-value=82 Score=27.10 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=33.0
Q ss_pred HhhhhcchHHHHHHhhhhh--hHHHHHHhhhhhhHHHHHHH
Q 004913 409 LVTAKTDMEDLITRLNQEM--TVKDYLMTKVKDLEVELETT 447 (724)
Q Consensus 409 l~~aktdmEDLiaRLnqe~--avk~fL~tKvkDlE~eLe~t 447 (724)
+...+.|.|.|-+=|.+.. -||++|+..++.||.++...
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTRKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888887777654 69999999999999999875
No 183
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.28 E-value=2.5e+02 Score=27.21 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=10.9
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 004913 547 KFLRSSQIGLKQELSQMLN 565 (724)
Q Consensus 547 KsLR~s~~~lk~el~~~~~ 565 (724)
+.||.+....++||...+.
T Consensus 88 ~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555556666666664
No 184
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=24.22 E-value=2.4e+02 Score=28.03 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=33.7
Q ss_pred hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHhhhhHHHHHHHHH
Q 004913 503 STVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVK-FLRSSQIGLKQELSQ 562 (724)
Q Consensus 503 s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVK-sLR~s~~~lk~el~~ 562 (724)
.+..|++ +.++....++|+|.+-+..++.|.+-=+--=.|--|=| .+|..|..|-+|..+
T Consensus 143 ~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 143 HLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555 66677777778888777777777665443333333333 245544444444433
No 185
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.89 E-value=4.3e+02 Score=25.95 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVRE 589 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~ 589 (724)
+.++++.++.+++.+.+-...+|. -|+.++-+..+++.|-.+-....+++.+.+..+.....++++=. ++=.
T Consensus 67 ~~~~~e~l~s~ae~ll~l~~~Le~-~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~-------~a~~ 138 (192)
T 2p22_C 67 FAGKIHAFRDQFKQLEENFEDLHE-QKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLE-------QNTK 138 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH-------HHHH
Q ss_pred HHHHHHHHHHHHH
Q 004913 590 KLLHECRILLNRF 602 (724)
Q Consensus 590 kllhec~iL~~rL 602 (724)
+.=.||+.|...+
T Consensus 139 e~eeeS~~l~~~F 151 (192)
T 2p22_C 139 KLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH
No 186
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.80 E-value=3.1e+02 Score=25.65 Aligned_cols=14 Identities=0% Similarity=0.159 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 004913 591 LLHECRILLNRFQA 604 (724)
Q Consensus 591 llhec~iL~~rLqE 604 (724)
+|.++..++...++
T Consensus 138 ~m~~yq~~q~~y~~ 151 (180)
T 1s94_A 138 VMSDYNTTQIDYRD 151 (180)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 187
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=23.75 E-value=5.2e+02 Score=25.23 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHh-----------HHHHHHHHH
Q 004913 507 DKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNE-----------KSKTEELLQ 575 (724)
Q Consensus 507 e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~e-----------K~e~E~~l~ 575 (724)
..++.+.|....+.++...|.+.+.=.+...++.-..++|...|..-...-+|+..+-.. +.++|+.-.
T Consensus 100 ~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~ 179 (305)
T 2efl_A 100 ASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQ 179 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH
Q 004913 576 QERQTHNHMKTVREKLLHECRILLN 600 (724)
Q Consensus 576 ~Er~~~e~~~~ar~kllhec~iL~~ 600 (724)
+..+....+..|+.....-|..+..
T Consensus 180 k~~~~~~~~~~a~~~Y~~~v~~~n~ 204 (305)
T 2efl_A 180 QAQIRHQMAEDSKADYSSILQKFNH 204 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 188
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.44 E-value=4e+02 Score=23.87 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 550 RSSQIGLKQELSQMLNEKSKTEE------LLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 550 R~s~~~lk~el~~~~~eK~e~E~------~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
+.+++.++.+..+.-.-|.+++. .|+...+..+.....+..-+-++..-+..|
T Consensus 43 ~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 43 DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444443 366666666665555555554444444433
No 189
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.10 E-value=1.8e+02 Score=31.24 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 004913 555 GLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQAC 605 (724)
Q Consensus 555 ~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC 605 (724)
+|+.|+...-+++.++++-+.+=++..+..+.--.+--.+.+.|+|++||.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444445444445555444444333322222222333334456677777774
No 190
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.08 E-value=1.6e+02 Score=32.87 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhhhhHHHHHH
Q 004913 540 KVLVKEVKFLRSSQIGLKQE 559 (724)
Q Consensus 540 KvLvKEVKsLR~s~~~lk~e 559 (724)
.-|..|+|.|+....+|+++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444433333
No 191
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=23.00 E-value=8.8e+02 Score=27.66 Aligned_cols=200 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHH--------------------hhhhhhHHHHHHHHHhhHHH
Q 004913 395 RHKLSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLM--------------------TKVKDLEVELETTKQKSKET 454 (724)
Q Consensus 395 r~kl~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~--------------------tKvkDlE~eLe~t~~~~ke~ 454 (724)
+.+-.+++.+.-.++..+...+...++-||=--++..+=. ..+..+=..|...++++++.
T Consensus 377 ~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~l~~~~~~~ 456 (704)
T 2xs1_A 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI 456 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHCSSTTSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHhcCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH--HHHh--------hHhhhhhhhcHHHHHHHHHHHHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHH
Q 004913 455 LQQA--ILSE--------RERLTQMQWDMEELRQKSLEMEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLEN 523 (724)
Q Consensus 455 lqQa--~l~E--------rEr~t~mqwdmeelr~k~~e~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~ 523 (724)
|.++ .|++ |..++. +|.-..=...+..+=..++.. ....+.+..=.. +.+.+...+..++.
T Consensus 457 L~e~~~~L~~E~~ed~~~R~k~g~-~w~r~~S~~~~~~l~~~~~~~-------~~~l~~A~~sD~~v~~~~~~~~~~l~~ 528 (704)
T 2xs1_A 457 LDESLRLLDEEEATDNDLRAKFKE-RWQRTPSNELYKPLRAEGTNF-------RTVLDKAVQADGQVKECYQSHRDTIVL 528 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT-TCCSCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCcHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhh--------------cccchhHHHHHHHHHhhhhHHHHHHHHH--------HHHh-------------HH
Q 004913 524 LSKRYEELEAK--------------SKADIKVLVKEVKFLRSSQIGLKQELSQ--------MLNE-------------KS 568 (724)
Q Consensus 524 l~k~~~elEak--------------skad~KvLvKEVKsLR~s~~~lk~el~~--------~~~e-------------K~ 568 (724)
|..-..+|++. .-...+-+.++|..|+++...+-++|.. .+.. +.
T Consensus 529 L~~~~~~l~~~~p~~~~~~~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~~~ddI~~~ll~~~~~~~~~~~e~lf~~ 608 (704)
T 2xs1_A 529 LCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVT 608 (704)
T ss_dssp HTSCHHHHHHTSCCCCCCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCCHHHHHHH
T ss_pred hCCCHHHHHhhCccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHhhcccccHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004913 569 KTEELLQQERQTHNHMKTVREKLLHECRILLNRF 602 (724)
Q Consensus 569 e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rL 602 (724)
++++....-.++.+.....-..||.++....+.+
T Consensus 609 eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f 642 (704)
T 2xs1_A 609 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF 642 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.98 E-value=2.2e+02 Score=24.29 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHhh-hhhhhcHHHHHHHHHHH
Q 004913 416 MEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQKSKETLQQAILSERERL-TQMQWDMEELRQKSLEM 483 (724)
Q Consensus 416 mEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~~~ke~lqQa~l~ErEr~-t~mqwdmeelr~k~~e~ 483 (724)
.+.+.+||.-.+.=-.=|-.+|.+||..|+.++.+ |+++ +.++==+|-|..|.+||
T Consensus 2 ~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~------------q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 2 SHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE------------QDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHH
No 193
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.79 E-value=3.4e+02 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004913 510 VLQELDATKEQLENLSKRYEELEA 533 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~elEa 533 (724)
|...|..++.+|++|.+=..-+|+
T Consensus 72 L~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 72 LRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777788888888877776663
No 194
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=22.78 E-value=5.5e+02 Score=25.20 Aligned_cols=180 Identities=13% Similarity=0.134 Sum_probs=101.0
Q ss_pred HHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHH---HHHHHHHhhHHHHHHHHHHhhHhhhhhhhcHHHHHHHHHH
Q 004913 406 ERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEV---ELETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLE 482 (724)
Q Consensus 406 ~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~---eLe~t~~~~ke~lqQa~l~ErEr~t~mqwdmeelr~k~~e 482 (724)
+.|+..+.+--+.|+..-+-..+ -+..++.+|.. .|...-..-+..|+.|. .+-+...+++++-.-+.+
T Consensus 60 ~~~v~~v~~~~~~L~~~~~~~~~---~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-----~~~~f~~~~~e~~~Wl~~ 131 (323)
T 3edv_A 60 QERVDTVNHLADELINSGHSDAA---TIAEWKDGLNEAWADLLELIDTRTQILAASY-----ELHKFYHDAKEIFGRIQD 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45666666666666654222111 12222333332 22222223334444443 123356688888888888
Q ss_pred HHHHhccccCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 004913 483 MEWKLKSKQDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELS 561 (724)
Q Consensus 483 ~E~~lks~~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~ 561 (724)
.|..|. .+ -+.--...+....+.+ +..+|.+.+..++.+......|-...-.+ .-..+++.+.
T Consensus 132 k~~~l~--~~-~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~-------------~~~~i~~~~~ 195 (323)
T 3edv_A 132 KHKKLP--EE-LGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGD-------------KADDIQKREN 195 (323)
T ss_dssp HHHTCC--CC-CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTH-------------HHHHHHHHHH
T ss_pred HHhhcc--cc-cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-------------cHHHHHHHHH
Confidence 887773 22 1211122344444455 66777777777777777666653221111 1134555566
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 004913 562 QMLNEKSKTEELLQQERQTHNHMKTVREKLLHECRILLNRFQACNANLY 610 (724)
Q Consensus 562 ~~~~eK~e~E~~l~~Er~~~e~~~~ar~kllhec~iL~~rLqEC~~~~~ 610 (724)
.....+..+......-+.+-+.+. ...+|..+|+-|..=|.+.--.+.
T Consensus 196 ~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~ 243 (323)
T 3edv_A 196 EVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIE 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777777776666666665 456899999999988888765554
No 195
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.71 E-value=4.6e+02 Score=28.57 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 543 VKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 543 vKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
.+-+|++...+..|++-+...-..-..++.+|
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34444444444444443333333333333333
No 196
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.62 E-value=98 Score=26.89 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHhhhhhhHHHHH
Q 004913 424 NQEMTVKDYLMTKVKDLEVELE 445 (724)
Q Consensus 424 nqe~avk~fL~tKvkDlE~eLe 445 (724)
..-..+|.-+..|+++||.||.
T Consensus 54 ~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 54 EAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555566666666654
No 197
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.49 E-value=4.7e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSK 569 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e 569 (724)
.|..-+++...+..++..+++- ++.+.--.|.|.|=+.-.+++++|+..|+++.+
T Consensus 42 ~L~~~~~m~~~i~ek~~~i~~~--~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~ 96 (119)
T 2avr_X 42 ALAQNEQVYNELSQRAQRLQAE--ANTRFYKSQYQELASKYEDALKKLEAEMEQQKA 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555442 333444444444444444444456676666543
No 198
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.46 E-value=1.2e+02 Score=24.17 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHH
Q 004913 541 VLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELL 574 (724)
Q Consensus 541 vLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l 574 (724)
-|-.+|+.|-..+.+|+.++..+-.|...+..+|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666655555444
No 199
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=22.00 E-value=5.8e+02 Score=27.56 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhccc--------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004913 521 LENLSKRYEELEAKSKA--------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREKLL 592 (724)
Q Consensus 521 ~e~l~k~~~elEakska--------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~kll 592 (724)
++.+.+++.+||.+.-. ..+-|.||.+.|......++ ++.+.+.+-.++..++..|... .-+.-+.
T Consensus 27 l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~-~~~~~~~d~~~~~el~~~e~D~-----e~~~~a~ 100 (365)
T 1gqe_A 27 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD-QMKQGLEDVSGLLELAVEADDE-----ETFNEAV 100 (365)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCH-----HHHHHHH
Confidence 34445566666554321 13456778777776544433 4556666666677776554211 1223334
Q ss_pred HHHHHHHHHHhhhccc
Q 004913 593 HECRILLNRFQACNAN 608 (724)
Q Consensus 593 hec~iL~~rLqEC~~~ 608 (724)
.|+..|..+|.+--..
T Consensus 101 ~e~~~l~~~l~~le~~ 116 (365)
T 1gqe_A 101 AELDALEEKLAQLEFR 116 (365)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544433
No 200
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.72 E-value=86 Score=28.41 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=30.8
Q ss_pred cchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Q 004913 414 TDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTK 448 (724)
Q Consensus 414 tdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~ 448 (724)
.+.++|+.++.+|..--+-|..+|..||.||+..|
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999998765
No 201
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.44 E-value=2.8e+02 Score=23.31 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHH
Q 004913 515 DATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSK 569 (724)
Q Consensus 515 ~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e 569 (724)
....++...|-++...+|...-.+- +++.|+..-..||-|+.+.+..-..
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-----~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-----EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444455555555555444333 8888888888888888777765443
No 202
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.41 E-value=98 Score=29.73 Aligned_cols=14 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHH
Q 004913 559 ELSQMLNEKSKTEE 572 (724)
Q Consensus 559 el~~~~~eK~e~E~ 572 (724)
+|..+...|..+|+
T Consensus 123 DLeASReAKKqlEa 136 (146)
T 2xnx_M 123 DLDASREAKKQVEK 136 (146)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 203
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.39 E-value=2.6e+02 Score=30.12 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhhccc--------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHH
Q 004913 519 EQLENLSKRYEELEAKSKA--------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNHMKTVREK 590 (724)
Q Consensus 519 ~~~e~l~k~~~elEakska--------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~~~~ar~k 590 (724)
+.++.+.+++++||.+.-. ..+-|.||.+.|..-.... +++.+.+.+-.++..++. +.+..+.+..-...
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~-~~~~~~~~~~~~~~el~~-D~e~~~~a~~e~~~ 80 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLI-REYRKVLEDLEQAESLLD-DPELKEMAKAEREA 80 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 3566667777777765321 2356778888887654433 345555666666666664 44444444444455
Q ss_pred HHHHHHHHHHHHh
Q 004913 591 LLHECRILLNRFQ 603 (724)
Q Consensus 591 llhec~iL~~rLq 603 (724)
+-.++..|..+|+
T Consensus 81 l~~~~~~le~~l~ 93 (354)
T 3d5a_X 81 LLARKEALEKELE 93 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 204
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=21.14 E-value=6.5e+02 Score=25.42 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhhhhcchHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH---hhHHHHHHHHHHhhHhhhhhhhcHH
Q 004913 398 LSRVLLTMERRLVTAKTDMEDLITRLNQEMTVKDYLMTKVKDLEVELETTKQ---KSKETLQQAILSERERLTQMQWDME 474 (724)
Q Consensus 398 l~rvl~t~~~rl~~aktdmEDLiaRLnqe~avk~fL~tKvkDlE~eLe~t~~---~~ke~lqQa~l~ErEr~t~mqwdme 474 (724)
|.+=|..-+.|+..+...-+.||+.=+ -++ +=+..++..|...-+..++ .-+..|++|. .+=|.+.|.+
T Consensus 53 le~El~a~e~~v~~v~~~g~~L~~~~h--p~~-~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~-----~~~qF~~da~ 124 (283)
T 3pe0_A 53 LMRELELKEKKIKELQNAGDRLLREDH--PAR-PTVESFQAALQTQWSWMLQLCCCIEAHLKENA-----AYFQFFSDVR 124 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC--TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCC--CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 344445555666666666666665211 111 1234444445554333333 3334444443 3456788999
Q ss_pred HHHHHHHHHHHHhccc-cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 004913 475 ELRQKSLEMEWKLKSK-QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 475 elr~k~~e~E~~lks~-~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~el 531 (724)
|+-.-...|+.++... -.+.++-+.+.+.+...++ +.++|.+....++.|.++-..+
T Consensus 125 e~e~Wl~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l 183 (283)
T 3pe0_A 125 EAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAV 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988555444443322 2344555565677777777 7778888887777777665544
No 205
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.91 E-value=1.2e+02 Score=26.71 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHHhhhhHHHHH
Q 004913 537 ADIKVLVKEVKFLRSSQIGLKQ 558 (724)
Q Consensus 537 ad~KvLvKEVKsLR~s~~~lk~ 558 (724)
.+++-|-++|..++....+|++
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444555554444444443
No 206
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.86 E-value=8.4e+02 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENLSKRYEEL 531 (724)
Q Consensus 510 ~~qel~~~~~~~e~l~k~~~el 531 (724)
+...+..+.+.++.+-+-+.|=
T Consensus 347 L~~~~~~~~~~~~~l~~yFGEd 368 (483)
T 2j1d_G 347 VEDLLAEAKDLFTKAVKHFGEE 368 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 4445555555566665555543
No 207
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.84 E-value=6.7e+02 Score=26.50 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH-HHHHHHhhhhHHHHHHHHHHHHh------HHHHHHHHHHHHH
Q 004913 507 DKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLV-KEVKFLRSSQIGLKQELSQMLNE------KSKTEELLQQERQ 579 (724)
Q Consensus 507 e~~~~qel~~~~~~~e~l~k~~~elEakskad~KvLv-KEVKsLR~s~~~lk~el~~~~~e------K~e~E~~l~~Er~ 579 (724)
..++.+.|....+.++.+.|.+.+.=.+...++.-.+ ++|...+..-...-+|...+... -.+++++-.+-.+
T Consensus 96 ~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k 175 (406)
T 4dyl_A 96 NSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVR 175 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHH---------------HHHHHHHHHHhhh
Q 004913 580 THNHMKTVREKLL---------------HECRILLNRFQAC 605 (724)
Q Consensus 580 ~~e~~~~ar~kll---------------hec~iL~~rLqEC 605 (724)
....+..|+...+ +++..+.+.+|+|
T Consensus 176 ~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~l 216 (406)
T 4dyl_A 176 SLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDL 216 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 208
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.81 E-value=2.2e+02 Score=24.98 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 004913 510 VLQELDATKEQLENL 524 (724)
Q Consensus 510 ~~qel~~~~~~~e~l 524 (724)
|+.||...+++++.|
T Consensus 57 L~~e~~~l~~~~eel 71 (81)
T 1wt6_A 57 LEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 209
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.58 E-value=8.6e+02 Score=27.55 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 004913 505 VKDKN-VLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTHNH 583 (724)
Q Consensus 505 ~~e~~-~~qel~~~~~~~e~l~k~~~elEakskad~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er~~~e~ 583 (724)
+.|.+ +.|.++.+|-.+-.+..-...+-++ |=.+++.+....+.|..+.++|..+|+.|..=+++...
T Consensus 348 vae~~~lrQRlddArNEItsaeSaInslqaq-----------vSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE 416 (602)
T 1cii_A 348 VAEWDKLRQRLLDARNKITSAESAVNSARNN-----------LSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAE 416 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004913 584 MKTVREKLLHECRILLN 600 (724)
Q Consensus 584 ~~~ar~kllhec~iL~~ 600 (724)
++.... |...+++
T Consensus 417 ~KrK~d----E~~aIKD 429 (602)
T 1cii_A 417 EKRKQD----ELKATKD 429 (602)
T ss_dssp HHHHHH----HHHHHHH
T ss_pred HHHhhh----HHHHHHH
No 210
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.50 E-value=9.8e+02 Score=27.22 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc----c----------chhHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004913 513 ELDATKEQLENLSKRYEELEAKSK----A----------DIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQER 578 (724)
Q Consensus 513 el~~~~~~~e~l~k~~~elEaksk----a----------d~KvLvKEVKsLR~s~~~lk~el~~~~~eK~e~E~~l~~Er 578 (724)
+|+++.++|-.+....+.|+-..+ + .++---.+||.+-++.-++++|++. .|.+|--++-.-|
T Consensus 357 ~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~---~~~~ls~~me~Rk 433 (551)
T 2b5u_A 357 ELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSD---ADAALSSAMESRK 433 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhhcccc---hhhhhhhhhhccc
Confidence 455566666665555555553322 0 1111223578888888888888754 4556666666667
Q ss_pred HhhhhHHHHHHHHHHH
Q 004913 579 QTHNHMKTVREKLLHE 594 (724)
Q Consensus 579 ~~~e~~~~ar~kllhe 594 (724)
|++-+++.|-.||=.|
T Consensus 434 q~e~k~k~ae~kl~~e 449 (551)
T 2b5u_A 434 KKEDKKRSAENNLNDE 449 (551)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhccchh
Confidence 7777777777777655
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.20 E-value=3.1e+02 Score=23.65 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHhhhhhhhcHHHHHHHHHHHHHHhccc----cCCCCcccchhhhhHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004913 463 RERLTQMQWDMEELRQKSLEMEWKLKSK----QDGNPHAESMEESTVKDKN-VLQELDATKEQLENLSKRYEELEAKSKA 537 (724)
Q Consensus 463 rEr~t~mqwdmeelr~k~~e~E~~lks~----~~~~~~~e~~~~s~~~e~~-~~qel~~~~~~~e~l~k~~~elEakska 537 (724)
+.++..++=.+..+.....+.+..++.. .|.+.+.-.-..-+....+ +...|....+.+ ..
T Consensus 19 ~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i--------------e~ 84 (117)
T 2zqm_A 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL--------------EV 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH--------------HH
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHH
Q 004913 538 DIKVLVKEVKFLRSSQIGLKQELSQML 564 (724)
Q Consensus 538 d~KvLvKEVKsLR~s~~~lk~el~~~~ 564 (724)
.++-|.+..+.++....++++.|.+.+
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!