Query 004914
Match_columns 724
No_of_seqs 523 out of 3440
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 14:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2066 Vacuolar assembly/sort 100.0 5E-108 1E-112 854.9 56.4 659 34-724 19-681 (846)
2 KOG2114 Vacuolar assembly/sort 100.0 7.9E-41 1.7E-45 352.9 42.6 591 55-723 26-724 (933)
3 KOG2063 Vacuolar assembly/sort 100.0 1.2E-26 2.6E-31 255.9 37.5 577 59-723 21-717 (877)
4 KOG2034 Vacuolar sorting prote 100.0 6.9E-27 1.5E-31 250.4 25.0 336 372-723 336-705 (911)
5 KOG0271 Notchless-like WD40 re 99.9 2.5E-25 5.3E-30 215.2 22.2 245 55-337 116-443 (480)
6 KOG0263 Transcription initiati 99.9 6.2E-24 1.3E-28 224.4 22.4 198 41-257 447-652 (707)
7 KOG0273 Beta-transducin family 99.9 2E-23 4.2E-28 207.5 24.3 218 55-301 236-513 (524)
8 KOG0271 Notchless-like WD40 re 99.9 8.4E-24 1.8E-28 204.7 19.8 188 59-258 164-443 (480)
9 KOG0272 U4/U6 small nuclear ri 99.9 3.5E-24 7.6E-29 210.2 16.4 191 57-259 180-380 (459)
10 KOG0272 U4/U6 small nuclear ri 99.9 5.1E-24 1.1E-28 209.0 15.5 192 56-259 219-423 (459)
11 KOG0291 WD40-repeat-containing 99.9 4.5E-21 9.9E-26 200.7 33.3 192 55-259 351-555 (893)
12 KOG0279 G protein beta subunit 99.9 3.2E-22 6.9E-27 186.7 22.1 189 59-258 70-266 (315)
13 KOG0279 G protein beta subunit 99.9 9E-21 2E-25 177.0 27.6 184 63-259 27-227 (315)
14 KOG0263 Transcription initiati 99.9 3.9E-21 8.6E-26 203.3 22.7 191 57-259 381-612 (707)
15 KOG0285 Pleiotropic regulator 99.9 5E-21 1.1E-25 184.1 18.1 193 55-259 152-353 (460)
16 KOG0286 G-protein beta subunit 99.9 1.4E-20 3.1E-25 176.6 20.7 184 57-252 148-343 (343)
17 KOG0286 G-protein beta subunit 99.9 5E-20 1.1E-24 173.0 23.8 213 59-301 62-293 (343)
18 KOG0284 Polyadenylation factor 99.9 1.9E-21 4.1E-26 190.2 13.8 187 59-257 145-340 (464)
19 KOG0281 Beta-TrCP (transducin 99.9 2.8E-21 6E-26 184.9 14.3 192 55-263 238-437 (499)
20 KOG0296 Angio-associated migra 99.9 2E-19 4.3E-24 174.0 26.6 190 55-255 65-264 (399)
21 KOG0276 Vesicle coat complex C 99.9 8.4E-20 1.8E-24 187.4 23.8 187 60-257 63-260 (794)
22 KOG0295 WD40 repeat-containing 99.8 3.1E-20 6.7E-25 179.4 17.8 192 55-258 151-368 (406)
23 KOG0315 G-protein beta subunit 99.8 1.7E-19 3.6E-24 165.7 21.6 194 57-256 45-247 (311)
24 KOG0310 Conserved WD40 repeat- 99.8 3.4E-18 7.4E-23 171.6 32.2 215 59-301 75-299 (487)
25 KOG0291 WD40-repeat-containing 99.8 1.3E-18 2.8E-23 182.5 29.4 195 56-256 267-510 (893)
26 KOG0319 WD40-repeat-containing 99.8 4.4E-18 9.6E-23 178.4 32.7 210 36-257 345-580 (775)
27 KOG0284 Polyadenylation factor 99.8 8.1E-21 1.8E-25 185.8 10.9 189 57-257 101-297 (464)
28 KOG0315 G-protein beta subunit 99.8 3.6E-19 7.8E-24 163.6 20.9 206 36-259 74-293 (311)
29 KOG0266 WD40 repeat-containing 99.8 8.2E-19 1.8E-23 190.9 27.6 194 55-258 160-368 (456)
30 KOG0772 Uncharacterized conser 99.8 2.5E-19 5.4E-24 180.1 20.4 191 60-258 175-398 (641)
31 KOG0266 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 191.9 24.0 191 58-257 209-412 (456)
32 KOG0275 Conserved WD40 repeat- 99.8 6.6E-20 1.4E-24 173.9 14.2 187 59-255 220-424 (508)
33 KOG0282 mRNA splicing factor [ 99.8 8.3E-20 1.8E-24 182.7 15.2 197 56-257 216-465 (503)
34 PTZ00421 coronin; Provisional 99.8 2.7E-18 5.9E-23 186.0 27.0 192 55-257 76-293 (493)
35 KOG0281 Beta-TrCP (transducin 99.8 6.1E-20 1.3E-24 175.8 11.8 189 55-259 198-393 (499)
36 PTZ00421 coronin; Provisional 99.8 1.4E-17 3.1E-22 180.4 30.5 160 88-257 70-248 (493)
37 KOG0313 Microtubule binding pr 99.8 3.9E-18 8.5E-23 165.8 22.7 258 48-360 99-396 (423)
38 KOG0645 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 157.4 22.3 189 57-256 19-227 (312)
39 KOG0316 Conserved WD40 repeat- 99.8 2.4E-18 5.1E-23 156.9 19.0 188 59-259 24-218 (307)
40 KOG0265 U5 snRNP-specific prot 99.8 1.6E-18 3.4E-23 163.8 18.3 204 35-257 37-249 (338)
41 KOG0295 WD40 repeat-containing 99.8 2.5E-18 5.5E-23 166.3 19.9 188 59-253 200-405 (406)
42 KOG0273 Beta-transducin family 99.8 3E-18 6.6E-23 170.8 20.7 192 55-254 277-523 (524)
43 PTZ00420 coronin; Provisional 99.8 2E-17 4.4E-22 180.0 29.1 189 60-256 34-250 (568)
44 KOG0318 WD40 repeat stress pro 99.8 4.8E-17 1E-21 164.4 29.2 191 57-256 64-310 (603)
45 KOG0318 WD40 repeat stress pro 99.8 1.1E-17 2.4E-22 168.9 24.2 187 59-255 197-561 (603)
46 PTZ00420 coronin; Provisional 99.8 1.1E-17 2.3E-22 182.1 25.9 191 55-256 75-295 (568)
47 cd00200 WD40 WD40 domain, foun 99.8 9.8E-17 2.1E-21 163.9 31.9 187 59-257 16-210 (289)
48 KOG0277 Peroxisomal targeting 99.8 6.5E-19 1.4E-23 162.4 13.3 201 36-253 95-308 (311)
49 smart00299 CLH Clathrin heavy 99.8 2.7E-19 5.8E-24 162.5 10.1 113 607-724 3-116 (140)
50 KOG0645 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 153.3 23.3 145 59-208 68-225 (312)
51 KOG0277 Peroxisomal targeting 99.8 1.3E-18 2.9E-23 160.4 14.3 188 59-257 67-268 (311)
52 KOG0283 WD40 repeat-containing 99.8 4.8E-18 1E-22 181.7 20.2 198 55-259 268-537 (712)
53 PLN00181 protein SPA1-RELATED; 99.8 4.3E-17 9.4E-22 190.9 28.8 188 59-256 539-740 (793)
54 KOG0299 U3 snoRNP-associated p 99.8 1.5E-17 3.2E-22 165.8 20.8 224 57-300 207-444 (479)
55 KOG0313 Microtubule binding pr 99.8 9.7E-18 2.1E-22 163.1 17.1 187 55-253 194-417 (423)
56 KOG0319 WD40-repeat-containing 99.8 6.4E-18 1.4E-22 177.2 16.9 177 64-252 424-617 (775)
57 KOG0292 Vesicle coat complex C 99.8 1.5E-16 3.2E-21 169.6 26.4 192 59-259 58-285 (1202)
58 KOG0265 U5 snRNP-specific prot 99.8 5.4E-17 1.2E-21 153.4 19.9 195 55-257 91-299 (338)
59 KOG0643 Translation initiation 99.8 3.8E-16 8.3E-21 145.3 25.0 225 41-299 6-250 (327)
60 KOG0292 Vesicle coat complex C 99.8 2E-17 4.4E-22 176.1 18.8 193 59-257 16-239 (1202)
61 KOG0269 WD40 repeat-containing 99.8 8.3E-18 1.8E-22 177.2 14.8 214 63-302 99-330 (839)
62 KOG0289 mRNA splicing factor [ 99.8 1.6E-16 3.4E-21 157.1 22.1 205 39-255 244-461 (506)
63 KOG0316 Conserved WD40 repeat- 99.7 2E-17 4.4E-22 150.9 14.4 184 60-257 67-260 (307)
64 KOG0283 WD40 repeat-containing 99.7 3.5E-17 7.6E-22 175.1 18.1 204 35-256 359-578 (712)
65 KOG0640 mRNA cleavage stimulat 99.7 1.4E-17 3E-22 157.6 13.0 192 58-258 118-339 (430)
66 KOG0293 WD40 repeat-containing 99.7 2.5E-17 5.4E-22 161.6 15.2 187 58-255 230-514 (519)
67 KOG1332 Vesicle coat complex C 99.7 1.4E-16 3.1E-21 146.3 18.9 189 60-255 19-242 (299)
68 KOG0294 WD40 repeat-containing 99.7 3.4E-16 7.3E-21 149.0 22.0 189 55-257 44-240 (362)
69 KOG0305 Anaphase promoting com 99.7 2E-16 4.3E-21 165.3 21.9 187 55-256 218-421 (484)
70 PLN00181 protein SPA1-RELATED; 99.7 9.4E-16 2E-20 179.7 30.2 189 55-256 484-692 (793)
71 KOG0296 Angio-associated migra 99.7 5.7E-16 1.2E-20 150.3 22.7 188 55-253 107-397 (399)
72 KOG0285 Pleiotropic regulator 99.7 5.5E-17 1.2E-21 156.5 15.0 186 60-257 201-392 (460)
73 KOG0300 WD40 repeat-containing 99.7 1.4E-16 3.1E-21 151.1 17.5 188 60-256 280-478 (481)
74 KOG0973 Histone transcription 99.7 2E-16 4.3E-21 173.7 21.2 179 59-243 20-237 (942)
75 KOG0274 Cdc4 and related F-box 99.7 6E-16 1.3E-20 168.0 24.8 187 55-258 250-445 (537)
76 KOG0264 Nucleosome remodeling 99.7 2.4E-16 5.1E-21 157.4 19.0 194 58-255 183-405 (422)
77 KOG1538 Uncharacterized conser 99.7 3.3E-13 7E-18 140.1 41.9 179 59-252 19-250 (1081)
78 cd00200 WD40 WD40 domain, foun 99.7 9.9E-16 2.2E-20 156.4 23.5 185 56-252 95-289 (289)
79 KOG0310 Conserved WD40 repeat- 99.7 4.1E-16 8.9E-21 156.8 19.3 208 37-257 9-228 (487)
80 KOG0282 mRNA splicing factor [ 99.7 8.6E-17 1.9E-21 161.3 13.7 182 59-252 265-503 (503)
81 KOG0276 Vesicle coat complex C 99.7 5.5E-16 1.2E-20 159.6 19.3 188 59-257 20-218 (794)
82 KOG0278 Serine/threonine kinas 99.7 1E-16 2.2E-21 147.6 11.5 204 60-292 25-234 (334)
83 KOG0275 Conserved WD40 repeat- 99.7 2.5E-16 5.5E-21 149.7 14.0 155 92-258 212-382 (508)
84 KOG0973 Histone transcription 99.7 9.1E-16 2E-20 168.5 20.3 192 55-256 70-357 (942)
85 KOG1446 Histone H3 (Lys4) meth 99.7 1.2E-14 2.6E-19 139.2 23.9 195 57-259 61-267 (311)
86 KOG0274 Cdc4 and related F-box 99.7 1.9E-15 4E-20 164.2 21.0 188 55-256 209-402 (537)
87 KOG0306 WD40-repeat-containing 99.7 6.1E-16 1.3E-20 162.6 16.4 185 58-254 418-664 (888)
88 KOG0270 WD40 repeat-containing 99.7 5.1E-15 1.1E-19 147.2 21.7 184 64-258 192-408 (463)
89 KOG0270 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 150.2 18.4 188 64-259 256-454 (463)
90 KOG0302 Ribosome Assembly prot 99.7 1.8E-15 4E-20 147.2 17.8 186 63-258 164-382 (440)
91 KOG0641 WD40 repeat protein [G 99.7 5.6E-14 1.2E-18 127.5 25.6 200 57-258 37-265 (350)
92 KOG4283 Transcription-coupled 99.7 8E-15 1.7E-19 138.2 20.8 203 55-260 44-282 (397)
93 KOG0301 Phospholipase A2-activ 99.7 2.5E-15 5.4E-20 156.9 19.2 174 63-254 70-249 (745)
94 KOG0289 mRNA splicing factor [ 99.7 6.3E-15 1.4E-19 145.9 20.6 191 55-257 220-422 (506)
95 KOG0302 Ribosome Assembly prot 99.7 1.7E-15 3.7E-20 147.4 16.3 149 57-210 216-380 (440)
96 KOG0299 U3 snoRNP-associated p 99.7 3.5E-15 7.6E-20 149.0 18.8 227 56-300 144-399 (479)
97 KOG0306 WD40-repeat-containing 99.7 2.3E-14 5E-19 150.9 25.6 146 56-207 67-218 (888)
98 KOG0772 Uncharacterized conser 99.7 6.4E-15 1.4E-19 148.7 20.5 161 87-255 161-348 (641)
99 KOG0300 WD40 repeat-containing 99.7 4.5E-15 9.8E-20 141.0 18.0 207 34-259 179-433 (481)
100 KOG0647 mRNA export protein (c 99.7 5.1E-15 1.1E-19 140.3 18.0 190 59-257 34-231 (347)
101 KOG0264 Nucleosome remodeling 99.7 3.1E-15 6.8E-20 149.5 17.4 188 60-257 133-350 (422)
102 KOG0268 Sof1-like rRNA process 99.7 1.2E-15 2.5E-20 147.8 13.6 186 55-257 67-262 (433)
103 PF00637 Clathrin: Region in C 99.7 1.5E-17 3.3E-22 151.7 0.5 114 606-724 2-116 (143)
104 KOG4328 WD40 protein [Function 99.7 1.1E-14 2.3E-19 145.4 20.3 193 55-254 187-399 (498)
105 KOG0301 Phospholipase A2-activ 99.7 2.9E-15 6.3E-20 156.4 17.0 182 55-255 102-289 (745)
106 KOG0305 Anaphase promoting com 99.6 5.1E-15 1.1E-19 154.8 18.6 190 55-256 261-463 (484)
107 KOG1407 WD40 repeat protein [F 99.6 1.8E-14 4E-19 133.8 19.6 182 41-243 60-290 (313)
108 KOG1407 WD40 repeat protein [F 99.6 3.7E-14 8.1E-19 131.8 21.5 190 57-257 25-264 (313)
109 KOG0278 Serine/threonine kinas 99.6 2.3E-15 4.9E-20 138.7 12.7 185 59-258 107-301 (334)
110 KOG0308 Conserved WD40 repeat- 99.6 1.2E-15 2.6E-20 158.1 11.9 185 62-257 35-246 (735)
111 KOG0985 Vesicle coat protein c 99.6 5.1E-15 1.1E-19 159.9 16.8 298 395-716 1050-1380(1666)
112 KOG1036 Mitotic spindle checkp 99.6 4.7E-14 1E-18 134.4 21.3 147 56-210 15-165 (323)
113 KOG2055 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 140.0 22.8 209 36-256 195-419 (514)
114 KOG0294 WD40 repeat-containing 99.6 4.9E-14 1.1E-18 134.5 19.4 189 55-257 84-284 (362)
115 KOG1332 Vesicle coat complex C 99.6 1E-14 2.2E-19 134.2 13.9 192 59-255 63-287 (299)
116 KOG0646 WD40 repeat protein [G 99.6 2.3E-14 5E-19 143.5 17.4 219 35-258 59-311 (476)
117 KOG0640 mRNA cleavage stimulat 99.6 2.1E-14 4.6E-19 136.3 16.0 202 50-258 167-387 (430)
118 KOG1273 WD40 repeat protein [G 99.6 3.8E-14 8.2E-19 135.0 17.5 187 60-257 31-229 (405)
119 KOG0288 WD40 repeat protein Ti 99.6 9.3E-15 2E-19 144.0 13.7 193 55-258 220-421 (459)
120 KOG0267 Microtubule severing p 99.6 1.6E-15 3.4E-20 159.0 8.7 177 59-247 77-260 (825)
121 KOG0269 WD40 repeat-containing 99.6 8.6E-15 1.9E-19 154.8 13.2 174 63-248 145-334 (839)
122 KOG0649 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 125.4 18.9 191 59-259 17-240 (325)
123 KOG2079 Vacuolar assembly/sort 99.6 1.7E-12 3.7E-17 142.5 28.9 176 544-721 803-995 (1206)
124 KOG0646 WD40 repeat protein [G 99.6 7.3E-14 1.6E-18 140.0 16.6 158 55-217 124-316 (476)
125 KOG0267 Microtubule severing p 99.6 4E-15 8.7E-20 156.0 8.0 183 62-256 38-228 (825)
126 KOG0308 Conserved WD40 repeat- 99.6 4.3E-14 9.2E-19 146.8 14.9 185 60-256 81-287 (735)
127 KOG1274 WD40 repeat protein [G 99.6 4.8E-13 1E-17 144.5 22.8 192 54-255 56-263 (933)
128 KOG0303 Actin-binding protein 99.5 2E-13 4.4E-18 133.8 17.4 186 61-257 41-252 (472)
129 KOG2445 Nuclear pore complex c 99.5 3E-12 6.4E-17 122.0 24.3 191 59-256 20-258 (361)
130 KOG1446 Histone H3 (Lys4) meth 99.5 4.1E-12 8.8E-17 122.0 24.4 190 59-257 21-220 (311)
131 KOG2048 WD40 repeat protein [G 99.5 1.2E-12 2.5E-17 137.1 22.1 197 55-257 26-236 (691)
132 KOG2096 WD40 repeat protein [G 99.5 3.7E-13 8E-18 128.5 16.8 196 55-257 87-363 (420)
133 KOG1274 WD40 repeat protein [G 99.5 9.2E-13 2E-17 142.3 21.9 193 58-258 19-222 (933)
134 KOG1539 WD repeat protein [Gen 99.5 3.5E-13 7.7E-18 143.8 18.4 185 57-254 453-648 (910)
135 KOG0641 WD40 repeat protein [G 99.5 2.2E-12 4.8E-17 117.2 20.4 187 57-256 94-305 (350)
136 KOG4378 Nuclear protein COP1 [ 99.5 3.4E-13 7.4E-18 135.7 16.2 185 63-258 90-284 (673)
137 KOG0288 WD40 repeat protein Ti 99.5 1E-13 2.2E-18 136.7 12.0 187 57-257 180-374 (459)
138 KOG0639 Transducin-like enhanc 99.5 1.2E-13 2.7E-18 138.9 12.5 182 59-253 516-703 (705)
139 KOG0647 mRNA export protein (c 99.5 1E-12 2.2E-17 124.9 17.4 175 58-243 78-311 (347)
140 KOG1188 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 125.5 19.0 224 65-300 41-285 (376)
141 KOG0307 Vesicle coat complex C 99.5 8.1E-12 1.7E-16 138.5 26.8 190 59-259 71-289 (1049)
142 KOG0293 WD40 repeat-containing 99.5 2.6E-13 5.7E-18 133.7 13.1 149 59-208 319-513 (519)
143 KOG2096 WD40 repeat protein [G 99.5 1.2E-12 2.7E-17 124.9 16.8 183 60-253 195-401 (420)
144 KOG0268 Sof1-like rRNA process 99.5 1.9E-13 4.2E-18 132.6 11.5 171 75-255 168-346 (433)
145 KOG0307 Vesicle coat complex C 99.5 1.2E-13 2.6E-18 152.8 10.9 203 39-258 110-331 (1049)
146 KOG2445 Nuclear pore complex c 99.5 6.3E-12 1.4E-16 119.8 20.5 164 90-257 10-210 (361)
147 KOG2048 WD40 repeat protein [G 99.5 1.4E-11 2.9E-16 129.2 24.7 210 59-281 76-302 (691)
148 KOG1524 WD40 repeat-containing 99.5 2.1E-12 4.6E-17 131.2 17.8 210 65-299 76-338 (737)
149 KOG1034 Transcriptional repres 99.5 3.4E-13 7.3E-18 129.4 11.5 190 65-259 106-342 (385)
150 KOG1063 RNA polymerase II elon 99.5 2E-12 4.2E-17 135.6 18.1 203 47-254 517-763 (764)
151 KOG2055 WD40 repeat protein [G 99.5 1.3E-12 2.7E-17 130.9 15.8 187 59-254 310-512 (514)
152 KOG1408 WD40 repeat protein [F 99.4 8E-13 1.7E-17 138.3 13.8 187 57-255 464-714 (1080)
153 KOG0303 Actin-binding protein 99.4 3.7E-12 8.1E-17 125.1 17.3 185 59-257 88-297 (472)
154 KOG0642 Cell-cycle nuclear pro 99.4 1.6E-12 3.6E-17 133.4 14.9 187 60-257 302-564 (577)
155 KOG1036 Mitotic spindle checkp 99.4 7.6E-12 1.6E-16 119.5 17.5 152 92-259 12-168 (323)
156 KOG0321 WD40 repeat-containing 99.4 9.1E-12 2E-16 129.4 18.2 190 64-257 64-304 (720)
157 KOG0643 Translation initiation 99.4 1.9E-11 4.2E-16 114.3 18.4 157 88-257 5-180 (327)
158 KOG2114 Vacuolar assembly/sort 99.4 1.8E-10 4E-15 124.1 27.7 110 610-724 396-510 (933)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.7E-10 1E-14 116.1 30.0 191 58-256 36-239 (300)
160 KOG1445 Tumor-specific antigen 99.4 4.7E-12 1E-16 130.9 13.7 200 47-257 620-847 (1012)
161 KOG0290 Conserved WD40 repeat- 99.4 3.6E-11 7.9E-16 113.7 17.7 191 57-252 153-363 (364)
162 KOG0771 Prolactin regulatory e 99.4 1.3E-11 2.9E-16 122.8 15.5 194 55-256 147-356 (398)
163 KOG4283 Transcription-coupled 99.3 1.6E-11 3.5E-16 116.2 14.1 158 89-258 39-223 (397)
164 KOG2919 Guanine nucleotide-bin 99.3 2.1E-11 4.6E-16 116.9 14.4 184 62-256 121-329 (406)
165 KOG0639 Transducin-like enhanc 99.3 8E-12 1.7E-16 126.1 11.9 184 60-257 473-666 (705)
166 KOG2066 Vacuolar assembly/sort 99.3 9E-09 2E-13 110.7 35.4 135 63-208 82-233 (846)
167 KOG0321 WD40 repeat-containing 99.3 3.6E-11 7.7E-16 125.1 16.2 193 59-258 107-351 (720)
168 KOG4328 WD40 protein [Function 99.3 8.3E-11 1.8E-15 118.0 16.6 194 59-257 241-453 (498)
169 KOG0649 WD40 repeat protein [G 99.3 6.2E-10 1.3E-14 102.9 20.9 185 57-255 65-275 (325)
170 KOG2106 Uncharacterized conser 99.3 9.2E-10 2E-14 111.7 23.8 183 57-258 249-481 (626)
171 KOG1408 WD40 repeat protein [F 99.3 1.2E-10 2.7E-15 122.3 17.9 195 65-262 393-634 (1080)
172 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 7E-10 1.5E-14 114.8 23.8 179 64-257 1-190 (300)
173 KOG0650 WD40 repeat nucleolar 99.3 1.2E-10 2.6E-15 120.3 16.4 160 87-256 394-597 (733)
174 KOG1034 Transcriptional repres 99.3 4E-11 8.6E-16 115.4 12.1 184 60-254 143-383 (385)
175 KOG4378 Nuclear protein COP1 [ 99.2 3.3E-10 7.2E-15 114.5 17.2 187 59-257 41-242 (673)
176 KOG1007 WD repeat protein TSSC 99.2 5E-10 1.1E-14 106.0 16.9 148 56-209 125-290 (370)
177 KOG1587 Cytoplasmic dynein int 99.2 8E-10 1.7E-14 119.6 20.8 194 55-258 243-476 (555)
178 KOG1523 Actin-related protein 99.2 1.4E-09 3E-14 104.7 19.7 195 55-256 11-238 (361)
179 KOG1273 WD40 repeat protein [G 99.2 5.4E-10 1.2E-14 107.1 15.8 151 96-256 26-185 (405)
180 KOG0650 WD40 repeat nucleolar 99.2 9.1E-10 2E-14 114.0 17.7 190 55-257 401-640 (733)
181 KOG1007 WD repeat protein TSSC 99.2 2.8E-10 6.2E-15 107.7 12.8 145 59-208 177-361 (370)
182 KOG1539 WD repeat protein [Gen 99.2 2.4E-09 5.2E-14 115.1 21.4 193 57-256 162-367 (910)
183 KOG1310 WD40 repeat protein [G 99.2 4.9E-10 1.1E-14 114.6 15.5 169 87-258 44-235 (758)
184 KOG2394 WD40 protein DMR-N9 [G 99.1 1.3E-10 2.7E-15 118.8 9.7 105 36-148 281-388 (636)
185 KOG1009 Chromatin assembly com 99.1 1.3E-09 2.9E-14 107.9 16.3 98 58-160 71-187 (434)
186 KOG1538 Uncharacterized conser 99.1 2.4E-09 5.2E-14 111.9 18.8 191 55-254 54-293 (1081)
187 KOG2106 Uncharacterized conser 99.1 6.4E-09 1.4E-13 105.7 20.9 183 55-251 330-518 (626)
188 PRK01742 tolB translocation pr 99.1 6.5E-09 1.4E-13 113.1 22.9 181 59-255 210-402 (429)
189 KOG2919 Guanine nucleotide-bin 99.1 2.3E-09 5E-14 103.2 16.8 204 34-249 131-364 (406)
190 KOG1009 Chromatin assembly com 99.1 5.2E-10 1.1E-14 110.8 11.3 149 60-214 21-201 (434)
191 KOG1445 Tumor-specific antigen 99.1 1.9E-09 4E-14 112.1 15.8 183 63-256 42-250 (1012)
192 KOG1272 WD40-repeat-containing 99.1 2.7E-10 5.9E-15 114.5 8.7 154 86-253 203-361 (545)
193 KOG1963 WD40 repeat protein [G 99.1 5.3E-09 1.2E-13 113.5 18.7 88 57-144 210-303 (792)
194 KOG1524 WD40 repeat-containing 99.1 8.6E-10 1.9E-14 112.6 11.2 129 55-202 105-280 (737)
195 PF08662 eIF2A: Eukaryotic tra 99.1 2.1E-08 4.5E-13 95.8 20.1 148 58-215 11-185 (194)
196 KOG0642 Cell-cycle nuclear pro 99.1 2.4E-09 5.3E-14 110.4 14.2 169 34-215 333-568 (577)
197 KOG4227 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 99.3 18.9 147 59-210 63-227 (609)
198 KOG1240 Protein kinase contain 99.0 1.8E-08 3.8E-13 112.8 21.2 193 60-257 1057-1337(1431)
199 KOG1188 WD40 repeat protein [G 99.0 1.5E-08 3.2E-13 98.6 17.3 153 63-219 83-253 (376)
200 KOG0290 Conserved WD40 repeat- 99.0 9.1E-09 2E-13 97.8 14.7 186 59-257 103-321 (364)
201 PRK01742 tolB translocation pr 99.0 1.6E-08 3.5E-13 110.0 18.9 171 73-257 183-364 (429)
202 KOG1517 Guanine nucleotide bin 99.0 1.5E-08 3.3E-13 111.5 17.9 197 55-256 1168-1383(1387)
203 KOG2394 WD40 protein DMR-N9 [G 99.0 1.2E-08 2.5E-13 104.7 15.5 132 54-191 219-384 (636)
204 KOG1240 Protein kinase contain 99.0 2.1E-08 4.5E-13 112.3 18.4 172 79-259 1034-1230(1431)
205 KOG0322 G-protein beta subunit 99.0 4.5E-09 9.9E-14 98.5 11.3 136 107-253 167-322 (323)
206 KOG1063 RNA polymerase II elon 99.0 5.5E-09 1.2E-13 110.2 13.2 160 86-254 518-699 (764)
207 KOG1310 WD40 repeat protein [G 99.0 7.8E-09 1.7E-13 106.0 13.2 197 59-259 57-308 (758)
208 KOG2110 Uncharacterized conser 98.9 2.2E-07 4.9E-12 91.5 22.5 187 57-257 49-251 (391)
209 KOG0644 Uncharacterized conser 98.9 1.4E-09 3.1E-14 116.5 7.5 106 55-169 191-301 (1113)
210 COG2319 FOG: WD40 repeat [Gene 98.9 1.3E-07 2.8E-12 102.1 22.9 184 61-257 119-317 (466)
211 PRK05137 tolB translocation pr 98.9 1.6E-07 3.6E-12 102.4 23.6 172 59-243 208-394 (435)
212 KOG2321 WD40 repeat protein [G 98.9 2.4E-08 5.1E-13 103.3 15.6 171 67-251 148-340 (703)
213 KOG2139 WD40 repeat protein [G 98.9 8.1E-08 1.8E-12 94.1 18.3 142 57-208 143-309 (445)
214 PRK03629 tolB translocation pr 98.9 1.7E-07 3.7E-12 101.8 23.1 184 58-254 204-406 (429)
215 KOG0322 G-protein beta subunit 98.9 1.6E-08 3.5E-13 94.9 12.8 147 55-207 151-322 (323)
216 PRK05137 tolB translocation pr 98.9 5.1E-07 1.1E-11 98.6 26.9 168 75-254 183-366 (435)
217 KOG2111 Uncharacterized conser 98.9 2.1E-06 4.4E-11 83.3 27.3 174 74-258 75-260 (346)
218 KOG1517 Guanine nucleotide bin 98.9 2.6E-08 5.5E-13 109.8 16.2 189 64-257 1123-1336(1387)
219 PRK04922 tolB translocation pr 98.9 2.4E-07 5.2E-12 101.1 23.9 183 59-254 210-411 (433)
220 KOG2321 WD40 repeat protein [G 98.9 6.1E-08 1.3E-12 100.3 17.7 189 59-258 58-306 (703)
221 PRK11028 6-phosphogluconolacto 98.9 1.5E-06 3.4E-11 91.3 29.0 193 57-256 39-260 (330)
222 COG2319 FOG: WD40 repeat [Gene 98.9 2.6E-07 5.7E-12 99.8 23.8 186 59-257 72-274 (466)
223 KOG1523 Actin-related protein 98.9 4E-08 8.6E-13 94.9 14.9 150 57-211 60-239 (361)
224 KOG0644 Uncharacterized conser 98.9 6.5E-10 1.4E-14 119.0 3.0 115 87-208 184-300 (1113)
225 PF04762 IKI3: IKI3 family; I 98.9 1.5E-05 3.3E-10 93.4 39.0 526 55-623 259-897 (928)
226 PRK02889 tolB translocation pr 98.9 6.3E-07 1.4E-11 97.4 26.1 172 74-257 176-363 (427)
227 PRK02889 tolB translocation pr 98.9 3.6E-07 7.7E-12 99.4 23.3 172 59-243 202-388 (427)
228 KOG2110 Uncharacterized conser 98.9 1.8E-07 3.9E-12 92.2 18.0 157 48-211 81-251 (391)
229 PF08662 eIF2A: Eukaryotic tra 98.8 5.9E-08 1.3E-12 92.7 14.3 102 59-167 66-178 (194)
230 KOG0974 WD-repeat protein WDR6 98.8 3.1E-08 6.6E-13 109.6 12.2 141 61-210 142-290 (967)
231 KOG1272 WD40-repeat-containing 98.8 1.7E-08 3.7E-13 101.8 9.0 185 59-257 136-326 (545)
232 KOG2139 WD40 repeat protein [G 98.8 8.8E-07 1.9E-11 87.0 20.5 188 57-258 103-313 (445)
233 KOG1587 Cytoplasmic dynein int 98.8 1.2E-07 2.6E-12 102.9 16.2 181 65-256 306-518 (555)
234 PF04053 Coatomer_WDAD: Coatom 98.8 4.6E-05 9.9E-10 81.8 35.5 398 88-581 27-429 (443)
235 KOG2111 Uncharacterized conser 98.8 6.4E-07 1.4E-11 86.7 18.5 107 57-168 139-256 (346)
236 KOG3881 Uncharacterized conser 98.8 4.8E-07 1E-11 89.9 17.5 193 56-258 107-324 (412)
237 KOG4227 WD40 repeat protein [G 98.7 1E-07 2.2E-12 94.0 12.1 162 87-258 50-229 (609)
238 KOG3621 WD40 repeat-containing 98.7 1.8E-06 3.8E-11 92.3 21.6 150 57-211 38-200 (726)
239 PRK11028 6-phosphogluconolacto 98.7 2.4E-06 5.3E-11 89.8 23.1 178 67-255 5-206 (330)
240 PRK04922 tolB translocation pr 98.7 9.1E-07 2E-11 96.5 19.5 170 74-257 184-371 (433)
241 KOG4497 Uncharacterized conser 98.7 2.3E-06 5E-11 83.1 18.7 95 59-158 55-153 (447)
242 KOG3881 Uncharacterized conser 98.7 4.1E-07 8.9E-12 90.3 13.9 146 63-215 160-327 (412)
243 PRK03629 tolB translocation pr 98.7 3.6E-06 7.9E-11 91.4 22.9 168 75-256 180-365 (429)
244 KOG1963 WD40 repeat protein [G 98.7 2E-06 4.3E-11 94.0 20.2 193 57-257 165-378 (792)
245 TIGR02800 propeller_TolB tol-p 98.7 2.6E-06 5.7E-11 92.8 21.7 168 74-255 170-355 (417)
246 TIGR02800 propeller_TolB tol-p 98.7 3.2E-06 6.9E-11 92.2 22.4 172 59-243 196-382 (417)
247 KOG2041 WD40 repeat protein [G 98.6 0.00016 3.5E-09 77.4 32.5 65 59-123 78-145 (1189)
248 KOG0280 Uncharacterized conser 98.6 8.7E-07 1.9E-11 84.8 14.2 190 60-255 129-334 (339)
249 PRK00178 tolB translocation pr 98.6 6.9E-06 1.5E-10 89.8 23.2 182 59-253 205-405 (430)
250 KOG4547 WD40 repeat-containing 98.6 6.7E-06 1.4E-10 86.3 20.6 183 62-257 3-223 (541)
251 KOG4497 Uncharacterized conser 98.5 1.3E-05 2.9E-10 77.9 20.2 187 57-255 96-392 (447)
252 KOG1064 RAVE (regulator of V-A 98.5 3.8E-07 8.3E-12 105.9 11.6 181 55-257 2209-2401(2439)
253 KOG0974 WD-repeat protein WDR6 98.5 1.5E-06 3.2E-11 96.6 14.9 186 62-259 97-293 (967)
254 PRK01029 tolB translocation pr 98.5 1.3E-05 2.8E-10 86.8 22.1 186 59-256 191-405 (428)
255 KOG4547 WD40 repeat-containing 98.5 6.4E-06 1.4E-10 86.4 18.5 139 63-209 69-221 (541)
256 PRK00178 tolB translocation pr 98.5 1.6E-05 3.5E-10 86.9 22.3 168 75-256 180-365 (430)
257 PRK04792 tolB translocation pr 98.5 2.2E-05 4.7E-10 85.8 23.1 182 59-253 224-424 (448)
258 KOG0771 Prolactin regulatory e 98.5 1.3E-06 2.9E-11 87.7 12.1 153 97-257 148-314 (398)
259 PF11768 DUF3312: Protein of u 98.4 6.4E-05 1.4E-09 79.7 23.8 84 91-179 257-340 (545)
260 KOG1334 WD40 repeat protein [G 98.4 8.3E-07 1.8E-11 90.5 9.1 174 87-263 136-321 (559)
261 PRK04792 tolB translocation pr 98.4 4E-05 8.7E-10 83.7 22.9 167 75-253 199-379 (448)
262 PF00400 WD40: WD domain, G-be 98.4 6E-07 1.3E-11 60.9 5.4 38 84-121 2-39 (39)
263 KOG1920 IkappaB kinase complex 98.4 0.0028 6.1E-08 72.6 36.8 106 57-167 200-321 (1265)
264 KOG1409 Uncharacterized conser 98.4 3.8E-06 8.3E-11 82.2 12.2 95 67-166 168-268 (404)
265 KOG3914 WD repeat protein WDR4 98.4 4.6E-06 9.9E-11 83.5 12.3 155 59-219 69-234 (390)
266 KOG1275 PAB-dependent poly(A) 98.4 7.2E-06 1.6E-10 89.9 14.7 146 57-208 180-342 (1118)
267 KOG1334 WD40 repeat protein [G 98.4 1.6E-05 3.4E-10 81.4 16.2 236 59-300 149-413 (559)
268 PF02239 Cytochrom_D1: Cytochr 98.3 4.4E-05 9.5E-10 80.6 20.4 179 65-256 6-204 (369)
269 KOG1354 Serine/threonine prote 98.3 2E-05 4.3E-10 77.3 15.6 196 55-256 26-303 (433)
270 KOG1409 Uncharacterized conser 98.3 2.7E-05 5.9E-10 76.4 15.5 150 55-210 69-272 (404)
271 PF05131 Pep3_Vps18: Pep3/Vps1 98.2 7.4E-06 1.6E-10 73.3 10.0 95 325-440 52-147 (147)
272 KOG2041 WD40 repeat protein [G 98.2 9.5E-05 2E-09 79.0 19.5 216 59-300 21-278 (1189)
273 KOG4532 WD40-like repeat conta 98.2 0.0001 2.3E-09 69.9 17.6 147 67-219 131-293 (344)
274 PLN02919 haloacid dehalogenase 98.2 0.00046 1E-08 82.8 26.3 193 58-257 629-891 (1057)
275 KOG4190 Uncharacterized conser 98.2 3.8E-06 8.2E-11 86.6 7.3 183 63-256 746-950 (1034)
276 KOG4714 Nucleoporin [Nuclear s 98.2 1.5E-05 3.2E-10 75.3 10.4 148 57-209 94-255 (319)
277 KOG0280 Uncharacterized conser 98.2 3.5E-05 7.6E-10 74.1 12.8 180 66-256 87-286 (339)
278 KOG4190 Uncharacterized conser 98.1 7E-06 1.5E-10 84.7 7.3 163 86-257 728-909 (1034)
279 KOG0985 Vesicle coat protein c 98.1 0.0003 6.6E-09 78.3 20.1 268 428-714 1250-1528(1666)
280 KOG2695 WD40 repeat protein [G 98.1 3E-05 6.6E-10 76.1 11.0 151 64-220 225-388 (425)
281 KOG1354 Serine/threonine prote 98.0 6.1E-05 1.3E-09 74.0 12.3 194 59-257 91-362 (433)
282 PRK04043 tolB translocation pr 98.0 0.0011 2.4E-08 71.5 23.3 170 59-243 194-385 (419)
283 PF10282 Lactonase: Lactonase, 98.0 0.0085 1.8E-07 63.2 29.7 186 59-255 93-323 (345)
284 COG2706 3-carboxymuconate cycl 98.0 0.0032 6.9E-08 63.0 23.5 190 59-256 95-323 (346)
285 PF04762 IKI3: IKI3 family; I 98.0 0.0012 2.7E-08 77.7 24.0 191 55-255 76-334 (928)
286 smart00299 CLH Clathrin heavy 98.0 6.6E-05 1.4E-09 67.8 10.7 116 458-584 7-126 (140)
287 COG4946 Uncharacterized protei 98.0 0.0016 3.4E-08 66.9 20.9 145 63-215 331-484 (668)
288 KOG4532 WD40-like repeat conta 97.9 0.00063 1.4E-08 64.8 16.5 188 64-258 84-286 (344)
289 KOG1064 RAVE (regulator of V-A 97.9 4.2E-05 9.2E-10 89.7 10.4 173 73-258 2189-2370(2439)
290 PF02239 Cytochrom_D1: Cytochr 97.9 0.0013 2.8E-08 69.6 19.8 155 58-218 42-212 (369)
291 PRK01029 tolB translocation pr 97.9 0.00024 5.3E-09 77.0 14.7 128 58-190 286-423 (428)
292 KOG2695 WD40 repeat protein [G 97.8 0.00011 2.3E-09 72.4 9.7 124 60-190 260-401 (425)
293 KOG0309 Conserved WD40 repeat- 97.8 5.2E-05 1.1E-09 81.3 7.8 146 59-209 74-233 (1081)
294 KOG2315 Predicted translation 97.8 0.0018 3.9E-08 68.1 18.8 178 59-256 172-392 (566)
295 PLN02919 haloacid dehalogenase 97.8 0.0019 4E-08 77.7 21.7 148 58-212 688-892 (1057)
296 PF10282 Lactonase: Lactonase, 97.8 0.04 8.7E-07 58.1 29.3 193 58-255 42-276 (345)
297 KOG3914 WD repeat protein WDR4 97.8 0.00037 8E-09 70.2 12.8 153 95-259 64-228 (390)
298 PRK04043 tolB translocation pr 97.8 0.0053 1.1E-07 66.3 22.7 155 74-243 169-336 (419)
299 COG4946 Uncharacterized protei 97.8 0.0012 2.6E-08 67.8 16.3 103 60-167 367-476 (668)
300 COG5170 CDC55 Serine/threonine 97.8 0.00035 7.5E-09 67.7 11.9 207 46-258 18-313 (460)
301 PF00637 Clathrin: Region in C 97.7 8E-06 1.7E-10 74.2 0.5 127 458-595 7-137 (143)
302 PF07433 DUF1513: Protein of u 97.6 0.0096 2.1E-07 59.6 20.1 173 59-247 57-278 (305)
303 KOG2079 Vacuolar assembly/sort 97.6 0.2 4.3E-06 57.5 32.1 328 375-715 409-826 (1206)
304 PF04053 Coatomer_WDAD: Coatom 97.6 0.013 2.9E-07 63.1 22.8 380 57-574 37-435 (443)
305 KOG1920 IkappaB kinase complex 97.6 0.014 3.1E-07 67.1 23.5 189 55-255 69-323 (1265)
306 TIGR03300 assembly_YfgL outer 97.6 0.0098 2.1E-07 63.8 21.9 188 61-257 62-262 (377)
307 KOG0309 Conserved WD40 repeat- 97.6 0.00046 1E-08 74.3 10.9 188 57-256 29-234 (1081)
308 KOG0882 Cyclophilin-related pe 97.6 0.00071 1.5E-08 69.0 11.4 204 55-258 10-235 (558)
309 PF15492 Nbas_N: Neuroblastoma 97.5 0.01 2.2E-07 57.7 18.5 97 58-159 49-168 (282)
310 KOG4714 Nucleoporin [Nuclear s 97.5 0.00038 8.2E-09 66.0 8.4 69 95-167 181-253 (319)
311 PF08553 VID27: VID27 cytoplas 97.5 0.014 2.9E-07 66.5 21.6 145 104-254 492-647 (794)
312 PF10366 Vps39_1: Vacuolar sor 97.5 0.00034 7.4E-09 59.2 6.8 65 654-718 3-67 (108)
313 KOG1912 WD40 repeat protein [G 97.5 0.0031 6.7E-08 68.7 15.2 180 66-255 81-305 (1062)
314 PF08450 SGL: SMP-30/Gluconola 97.5 0.03 6.6E-07 55.9 22.1 157 64-234 51-232 (246)
315 COG2706 3-carboxymuconate cycl 97.5 0.16 3.5E-06 51.2 28.0 176 73-256 15-223 (346)
316 KOG1912 WD40 repeat protein [G 97.4 0.00027 5.9E-09 76.5 7.0 184 66-259 439-661 (1062)
317 TIGR03300 assembly_YfgL outer 97.4 0.018 3.9E-07 61.7 21.2 174 64-251 190-376 (377)
318 KOG2315 Predicted translation 97.4 0.011 2.3E-07 62.4 18.1 154 50-214 214-395 (566)
319 PF08553 VID27: VID27 cytoplas 97.4 0.018 3.9E-07 65.6 21.2 130 72-208 502-647 (794)
320 TIGR02658 TTQ_MADH_Hv methylam 97.4 0.15 3.3E-06 53.0 26.4 70 60-129 53-142 (352)
321 PF08450 SGL: SMP-30/Gluconola 97.4 0.031 6.8E-07 55.8 21.0 180 59-254 6-213 (246)
322 PF00400 WD40: WD domain, G-be 97.4 0.00059 1.3E-08 45.9 5.8 35 127-166 4-39 (39)
323 KOG1645 RING-finger-containing 97.3 0.015 3.1E-07 59.0 17.2 137 59-197 200-349 (463)
324 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.073 1.6E-06 51.0 20.4 81 63-144 62-146 (354)
325 PF13360 PQQ_2: PQQ-like domai 97.3 0.014 3.1E-07 57.8 17.3 182 60-257 32-233 (238)
326 PF00780 CNH: CNH domain; Int 97.3 0.04 8.6E-07 56.1 20.6 152 59-216 2-173 (275)
327 PF10366 Vps39_1: Vacuolar sor 97.2 0.0011 2.3E-08 56.2 7.1 89 493-593 2-107 (108)
328 KOG4640 Anaphase-promoting com 97.2 0.00096 2.1E-08 71.1 8.2 88 57-144 25-116 (665)
329 PF11768 DUF3312: Protein of u 97.2 0.0056 1.2E-07 65.4 13.6 67 60-127 267-333 (545)
330 PF04841 Vps16_N: Vps16, N-ter 97.2 0.15 3.2E-06 55.0 24.9 69 57-126 33-112 (410)
331 PF07433 DUF1513: Protein of u 97.2 0.13 2.7E-06 51.8 22.0 214 59-297 11-272 (305)
332 smart00320 WD40 WD40 repeats. 97.1 0.0011 2.5E-08 43.4 5.3 38 84-121 3-40 (40)
333 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00052 1.1E-08 75.4 5.1 178 57-257 1104-1294(1516)
334 PLN03081 pentatricopeptide (PP 97.0 0.042 9.2E-07 64.1 20.1 289 395-714 191-552 (697)
335 KOG2314 Translation initiation 97.0 0.022 4.7E-07 60.0 15.1 168 57-243 215-411 (698)
336 KOG1645 RING-finger-containing 97.0 0.0033 7.1E-08 63.5 8.8 100 86-189 186-289 (463)
337 KOG3617 WD40 and TPR repeat-co 97.0 0.003 6.4E-08 69.4 9.1 107 56-168 19-131 (1416)
338 PLN03077 Protein ECB2; Provisi 96.9 0.13 2.9E-06 61.6 23.7 276 395-715 154-480 (857)
339 COG5170 CDC55 Serine/threonine 96.8 0.0071 1.5E-07 58.9 9.4 125 90-219 169-321 (460)
340 PF13360 PQQ_2: PQQ-like domai 96.8 0.052 1.1E-06 53.7 16.2 139 73-219 2-151 (238)
341 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.47 1E-05 49.5 23.2 173 74-257 27-226 (352)
342 PLN03218 maturation of RBCL 1; 96.8 0.25 5.3E-06 59.5 23.7 100 401-503 414-520 (1060)
343 PLN03081 pentatricopeptide (PP 96.7 0.28 6E-06 57.3 23.9 251 395-663 89-373 (697)
344 PLN03077 Protein ECB2; Provisi 96.7 0.16 3.4E-06 60.9 22.0 32 542-573 424-455 (857)
345 KOG2314 Translation initiation 96.7 0.21 4.6E-06 53.0 19.1 107 97-211 214-337 (698)
346 KOG2395 Protein involved in va 96.6 0.075 1.6E-06 56.1 15.8 132 69-208 351-500 (644)
347 KOG2063 Vacuolar assembly/sort 96.6 0.068 1.5E-06 61.4 17.0 211 463-690 596-843 (877)
348 KOG4640 Anaphase-promoting com 96.6 0.0089 1.9E-07 64.1 9.3 93 95-192 22-116 (665)
349 KOG1008 Uncharacterized conser 96.6 0.00082 1.8E-08 71.6 1.2 186 64-258 70-279 (783)
350 KOG1275 PAB-dependent poly(A) 96.5 0.051 1.1E-06 60.8 14.4 174 63-252 146-340 (1118)
351 KOG2076 RNA polymerase III tra 96.5 0.12 2.6E-06 58.2 17.1 183 525-715 297-508 (895)
352 KOG3616 Selective LIM binding 96.5 0.23 5E-06 54.4 18.4 253 391-716 555-817 (1636)
353 KOG2395 Protein involved in va 96.4 0.1 2.2E-06 55.2 15.3 148 102-255 342-501 (644)
354 PRK11138 outer membrane biogen 96.4 0.25 5.4E-06 53.2 19.2 175 65-253 206-393 (394)
355 PF00930 DPPIV_N: Dipeptidyl p 96.4 1.1 2.4E-05 47.3 23.7 91 61-157 1-119 (353)
356 KOG0882 Cyclophilin-related pe 96.4 0.12 2.6E-06 53.4 15.0 192 59-257 60-308 (558)
357 PF06977 SdiA-regulated: SdiA- 96.4 1.2 2.6E-05 44.0 22.2 187 59-251 28-247 (248)
358 COG5354 Uncharacterized protei 96.3 0.14 3E-06 53.8 15.5 143 59-211 229-398 (561)
359 PRK11138 outer membrane biogen 96.3 0.24 5.2E-06 53.4 18.5 185 63-257 68-277 (394)
360 COG0823 TolB Periplasmic compo 96.3 0.13 2.8E-06 55.3 15.8 145 59-211 199-361 (425)
361 PLN03218 maturation of RBCL 1; 96.2 0.93 2E-05 54.8 24.1 105 399-503 376-485 (1060)
362 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.25 5.3E-06 41.5 13.5 94 65-163 16-109 (111)
363 COG5354 Uncharacterized protei 96.2 0.12 2.6E-06 54.2 14.0 169 57-242 37-239 (561)
364 PF02897 Peptidase_S9_N: Proly 96.1 1.1 2.4E-05 48.7 22.6 208 95-342 125-367 (414)
365 PF14761 HPS3_N: Hermansky-Pud 96.1 0.4 8.6E-06 45.4 16.0 143 59-208 22-214 (215)
366 KOG1832 HIV-1 Vpr-binding prot 96.0 0.0089 1.9E-07 66.1 5.3 158 86-257 1094-1258(1516)
367 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.37 8E-06 40.5 13.3 96 96-202 2-108 (111)
368 PF08596 Lgl_C: Lethal giant l 95.9 0.23 4.9E-06 53.0 15.3 189 59-254 8-290 (395)
369 KOG3621 WD40 repeat-containing 95.8 0.044 9.4E-07 59.7 9.4 113 92-209 32-155 (726)
370 COG0823 TolB Periplasmic compo 95.6 0.42 9E-06 51.5 16.1 163 74-247 173-349 (425)
371 KOG2280 Vacuolar assembly/sort 95.6 5.2 0.00011 44.8 35.7 67 59-126 39-115 (829)
372 TIGR02917 PEP_TPR_lipo putativ 95.5 1.6 3.4E-05 52.5 22.5 24 692-715 873-896 (899)
373 KOG2376 Signal recognition par 95.3 2.2 4.7E-05 46.3 19.5 129 428-568 111-250 (652)
374 COG5167 VID27 Protein involved 95.1 1.4 3.1E-05 46.6 17.0 134 70-208 486-632 (776)
375 TIGR02917 PEP_TPR_lipo putativ 95.0 2.7 5.9E-05 50.4 22.8 56 400-455 438-493 (899)
376 PF03178 CPSF_A: CPSF A subuni 95.0 5.3 0.00011 41.6 22.0 171 74-256 2-204 (321)
377 PF15492 Nbas_N: Neuroblastoma 95.0 4.2 9E-05 40.1 19.4 147 99-257 3-191 (282)
378 PF12894 Apc4_WD40: Anaphase-p 94.9 0.091 2E-06 36.7 5.4 33 93-125 11-43 (47)
379 COG3490 Uncharacterized protei 94.8 0.75 1.6E-05 45.1 13.3 179 59-253 120-347 (366)
380 PRK13616 lipoprotein LpqB; Pro 94.8 0.71 1.5E-05 52.0 15.3 140 59-208 356-525 (591)
381 KOG3617 WD40 and TPR repeat-co 94.7 0.071 1.5E-06 59.1 6.8 103 99-208 21-131 (1416)
382 PRK11447 cellulose synthase su 94.7 4 8.7E-05 50.7 23.1 56 401-457 359-415 (1157)
383 PF04841 Vps16_N: Vps16, N-ter 94.6 5.3 0.00011 43.1 20.9 67 181-252 216-285 (410)
384 PRK11788 tetratricopeptide rep 94.4 8.5 0.00018 41.1 23.3 52 403-455 45-97 (389)
385 PHA02713 hypothetical protein; 94.3 1.4 3.1E-05 49.6 16.5 186 60-259 300-538 (557)
386 KOG1008 Uncharacterized conser 94.1 0.025 5.5E-07 60.7 1.8 141 63-208 114-275 (783)
387 KOG4649 PQQ (pyrrolo-quinoline 94.1 6.2 0.00013 38.4 21.8 98 64-168 23-123 (354)
388 PRK10049 pgaA outer membrane p 94.0 11 0.00023 44.6 23.8 89 393-481 15-106 (765)
389 smart00320 WD40 WD40 repeats. 93.9 0.17 3.7E-06 32.3 5.2 33 129-166 7-40 (40)
390 PRK02888 nitrous-oxide reducta 93.8 2.8 6.1E-05 46.6 16.6 89 115-209 296-405 (635)
391 KOG3616 Selective LIM binding 93.7 5.3 0.00012 44.4 18.2 109 426-572 705-821 (1636)
392 COG5167 VID27 Protein involved 93.6 2.1 4.6E-05 45.4 14.4 146 102-255 476-633 (776)
393 PF08596 Lgl_C: Lethal giant l 93.4 2.4 5.3E-05 45.2 15.3 150 95-255 3-174 (395)
394 TIGR00990 3a0801s09 mitochondr 93.4 8.8 0.00019 44.1 21.2 28 541-568 330-357 (615)
395 PF12816 Vps8: Golgi CORVET co 93.3 0.15 3.3E-06 48.4 5.4 73 647-719 19-95 (196)
396 PF13525 YfiO: Outer membrane 93.3 1.4 3E-05 42.4 12.3 134 401-565 13-164 (203)
397 PRK15174 Vi polysaccharide exp 93.2 10 0.00022 43.9 21.3 64 392-459 41-108 (656)
398 PRK13616 lipoprotein LpqB; Pro 93.2 3.3 7.1E-05 46.8 16.6 156 94-257 350-528 (591)
399 PF14559 TPR_19: Tetratricopep 93.1 0.12 2.6E-06 39.5 3.8 57 403-459 1-57 (68)
400 PF14781 BBS2_N: Ciliary BBSom 92.9 6 0.00013 34.6 13.9 114 99-215 4-132 (136)
401 PF03178 CPSF_A: CPSF A subuni 92.9 1.3 2.8E-05 46.2 12.3 107 54-168 88-202 (321)
402 PF15390 DUF4613: Domain of un 92.9 4.7 0.0001 43.9 16.0 182 94-301 20-222 (671)
403 PF12894 Apc4_WD40: Anaphase-p 92.8 0.3 6.5E-06 34.2 4.9 30 135-169 13-42 (47)
404 PRK10747 putative protoheme IX 92.6 17 0.00037 39.1 22.4 172 535-717 180-388 (398)
405 PF04097 Nic96: Nup93/Nic96; 92.5 7.3 0.00016 44.5 18.4 296 392-719 110-456 (613)
406 KOG2076 RNA polymerase III tra 92.4 16 0.00034 42.1 20.0 41 432-472 144-187 (895)
407 PRK10866 outer membrane biogen 92.3 8.6 0.00019 38.1 16.6 148 400-563 39-196 (243)
408 COG3386 Gluconolactonase [Carb 92.2 16 0.00034 37.6 21.2 129 94-234 111-262 (307)
409 KOG3630 Nuclear pore complex, 91.9 7 0.00015 45.8 16.8 140 95-242 102-259 (1405)
410 PF00780 CNH: CNH domain; Int 91.9 7.5 0.00016 39.3 16.3 142 102-258 4-169 (275)
411 PF14870 PSII_BNR: Photosynthe 91.8 4.7 0.0001 41.2 14.2 136 61-205 153-301 (302)
412 KOG4441 Proteins containing BT 91.7 9.9 0.00022 42.9 18.1 186 59-257 328-549 (571)
413 PF10395 Utp8: Utp8 family; I 91.7 27 0.00059 39.4 21.1 163 93-257 129-308 (670)
414 KOG4460 Nuclear pore complex, 91.7 5.4 0.00012 42.7 14.4 27 95-121 105-131 (741)
415 PF12234 Rav1p_C: RAVE protein 91.6 2.9 6.2E-05 46.9 13.3 99 61-167 38-155 (631)
416 PRK11447 cellulose synthase su 91.4 21 0.00046 44.5 22.4 154 398-568 33-207 (1157)
417 TIGR00990 3a0801s09 mitochondr 91.4 24 0.00053 40.5 21.5 52 406-457 307-361 (615)
418 COG3386 Gluconolactonase [Carb 91.0 8.5 0.00018 39.5 15.3 111 74-191 143-264 (307)
419 COG2956 Predicted N-acetylgluc 91.0 8.8 0.00019 38.8 14.5 152 391-567 64-239 (389)
420 PF14870 PSII_BNR: Photosynthe 90.9 20 0.00044 36.6 22.0 177 65-251 115-301 (302)
421 KOG4441 Proteins containing BT 90.9 7.7 0.00017 43.8 16.2 209 63-300 284-530 (571)
422 PF13429 TPR_15: Tetratricopep 90.8 1.1 2.4E-05 45.6 8.9 57 401-457 16-74 (280)
423 KOG2444 WD40 repeat protein [G 90.6 1.1 2.3E-05 42.7 7.5 129 108-255 33-167 (238)
424 PF06977 SdiA-regulated: SdiA- 90.5 13 0.00029 36.8 15.6 118 87-209 15-148 (248)
425 PF07569 Hira: TUP1-like enhan 90.4 2.5 5.5E-05 41.1 10.3 75 49-124 7-96 (219)
426 PHA03098 kelch-like protein; P 90.3 18 0.00039 40.7 18.9 184 59-257 290-514 (534)
427 PF08728 CRT10: CRT10; InterP 90.3 15 0.00032 42.0 17.2 146 55-207 41-245 (717)
428 PHA02790 Kelch-like protein; P 90.2 14 0.0003 40.9 17.4 140 62-213 270-428 (480)
429 PF13432 TPR_16: Tetratricopep 90.0 0.82 1.8E-05 34.4 5.4 58 400-457 4-61 (65)
430 PF12234 Rav1p_C: RAVE protein 89.9 8.5 0.00018 43.3 15.0 111 95-208 31-156 (631)
431 TIGR00540 hemY_coli hemY prote 89.8 3.9 8.4E-05 44.3 12.4 164 400-566 160-359 (409)
432 PF12569 NARP1: NMDA receptor- 89.8 2.4 5.2E-05 46.9 10.7 66 399-464 10-75 (517)
433 KOG2377 Uncharacterized conser 89.7 18 0.00039 38.2 15.9 186 63-258 32-234 (657)
434 TIGR00540 hemY_coli hemY prote 89.5 19 0.00042 38.9 17.5 150 401-567 126-288 (409)
435 cd00216 PQQ_DH Dehydrogenases 89.5 22 0.00049 39.4 18.4 65 63-128 60-133 (488)
436 PRK13684 Ycf48-like protein; P 89.4 30 0.00066 36.1 20.3 148 93-252 172-329 (334)
437 PRK10049 pgaA outer membrane p 89.1 41 0.0009 39.8 21.2 72 633-713 377-450 (765)
438 PRK02888 nitrous-oxide reducta 88.9 4.9 0.00011 44.7 12.1 99 63-168 287-404 (635)
439 KOG2444 WD40 repeat protein [G 88.6 1.5 3.2E-05 41.8 6.8 66 63-128 69-137 (238)
440 cd00216 PQQ_DH Dehydrogenases 88.3 46 0.001 36.9 20.0 33 187-219 402-435 (488)
441 PF09026 CENP-B_dimeris: Centr 87.9 0.15 3.2E-06 40.6 -0.1 21 25-45 30-50 (101)
442 PLN00033 photosystem II stabil 87.7 29 0.00064 37.1 16.8 103 93-205 280-396 (398)
443 PF15390 DUF4613: Domain of un 87.6 13 0.00029 40.6 13.9 111 94-209 57-187 (671)
444 PRK11788 tetratricopeptide rep 87.5 13 0.00028 39.7 14.7 56 400-455 76-135 (389)
445 PRK14574 hmsH outer membrane p 87.5 52 0.0011 39.0 20.2 25 544-568 171-195 (822)
446 PRK15174 Vi polysaccharide exp 87.5 49 0.0011 38.3 19.9 71 404-475 87-161 (656)
447 PRK10747 putative protoheme IX 87.4 5.2 0.00011 43.1 11.4 56 400-455 160-215 (398)
448 KOG2247 WD40 repeat-containing 86.7 0.1 2.3E-06 54.6 -2.1 138 58-202 40-182 (615)
449 PF10647 Gmad1: Lipoprotein Lp 86.6 37 0.00079 33.9 16.8 132 59-197 30-183 (253)
450 PF05096 Glu_cyclase_2: Glutam 86.5 24 0.00053 35.0 14.2 154 94-256 45-205 (264)
451 PHA02713 hypothetical protein; 86.4 9 0.0002 43.2 13.0 147 59-213 347-538 (557)
452 PRK11189 lipoprotein NlpI; Pro 86.3 3.3 7.1E-05 42.6 8.7 57 401-458 106-163 (296)
453 PF13371 TPR_9: Tetratricopept 86.0 1.3 2.9E-05 34.1 4.4 57 401-458 3-60 (73)
454 COG3391 Uncharacterized conser 85.8 54 0.0012 35.0 21.5 152 96-256 76-241 (381)
455 PF10313 DUF2415: Uncharacteri 85.4 2.5 5.4E-05 28.7 4.7 31 94-124 1-34 (43)
456 KOG4499 Ca2+-binding protein R 85.2 30 0.00065 33.4 13.3 183 64-257 27-244 (310)
457 PF12341 DUF3639: Protein of u 85.0 2.3 4.9E-05 25.7 3.9 26 55-80 2-27 (27)
458 COG3391 Uncharacterized conser 85.0 58 0.0013 34.8 19.9 156 58-220 121-295 (381)
459 KOG1897 Damage-specific DNA bi 84.4 92 0.002 36.6 21.1 186 60-255 495-702 (1096)
460 PF12816 Vps8: Golgi CORVET co 83.6 0.59 1.3E-05 44.4 1.6 84 475-567 6-91 (196)
461 KOG3630 Nuclear pore complex, 82.6 7.6 0.00017 45.6 9.9 96 94-196 156-260 (1405)
462 PF14781 BBS2_N: Ciliary BBSom 82.3 18 0.00038 31.7 9.8 106 139-252 4-123 (136)
463 KOG2005 26S proteasome regulat 82.1 4.5 9.7E-05 44.6 7.5 129 579-715 174-311 (878)
464 KOG1840 Kinesin light chain [C 82.0 88 0.0019 34.6 18.1 106 427-567 199-308 (508)
465 COG5290 IkappaB kinase complex 81.6 5.7 0.00012 44.6 8.1 115 46-166 195-322 (1243)
466 PF13512 TPR_18: Tetratricopep 81.5 9.9 0.00021 33.8 8.3 56 400-455 17-75 (142)
467 KOG1916 Nuclear protein, conta 81.4 0.94 2E-05 51.2 2.3 64 60-123 191-265 (1283)
468 COG3204 Uncharacterized protei 81.1 64 0.0014 32.4 14.8 115 89-208 81-210 (316)
469 PF10168 Nup88: Nuclear pore c 80.3 1.2E+02 0.0027 35.2 20.0 66 59-124 91-180 (717)
470 KOG4499 Ca2+-binding protein R 80.0 60 0.0013 31.4 15.3 131 94-234 109-261 (310)
471 TIGR03302 OM_YfiO outer membra 79.8 35 0.00077 33.3 12.9 58 401-458 41-101 (235)
472 PF14727 PHTB1_N: PTHB1 N-term 79.6 94 0.002 33.5 24.1 54 108-166 148-202 (418)
473 COG3071 HemY Uncharacterized e 79.0 29 0.00062 36.2 11.7 164 399-566 159-352 (400)
474 TIGR02521 type_IV_pilW type IV 79.0 23 0.00051 33.8 11.4 55 401-455 39-93 (234)
475 PF07569 Hira: TUP1-like enhan 78.9 10 0.00022 36.8 8.4 27 101-127 18-44 (219)
476 PRK13684 Ycf48-like protein; P 78.7 89 0.0019 32.6 16.6 106 92-206 213-329 (334)
477 PF12895 Apc3: Anaphase-promot 78.4 3 6.5E-05 33.3 3.9 45 403-448 35-79 (84)
478 KOG2003 TPR repeat-containing 78.0 45 0.00097 35.2 12.7 43 526-568 576-618 (840)
479 PF09976 TPR_21: Tetratricopep 77.8 43 0.00093 29.9 11.8 53 403-456 21-77 (145)
480 KOG1840 Kinesin light chain [C 77.8 22 0.00049 39.1 11.4 55 401-455 207-269 (508)
481 PF13429 TPR_15: Tetratricopep 77.7 11 0.00024 38.3 8.7 26 543-568 215-240 (280)
482 COG4105 ComL DNA uptake lipopr 77.2 79 0.0017 31.2 15.4 157 398-594 39-211 (254)
483 PF10168 Nup88: Nuclear pore c 77.1 1.5E+02 0.0033 34.5 27.5 70 135-209 86-180 (717)
484 TIGR02521 type_IV_pilW type IV 76.7 33 0.00071 32.8 11.7 56 400-455 72-127 (234)
485 KOG2003 TPR repeat-containing 75.9 22 0.00047 37.5 9.9 144 551-715 533-685 (840)
486 PRK09782 bacteriophage N4 rece 75.9 2E+02 0.0043 35.1 19.7 56 403-459 54-110 (987)
487 PF14583 Pectate_lyase22: Olig 75.8 86 0.0019 33.1 14.3 164 82-258 19-226 (386)
488 PHA03098 kelch-like protein; P 75.6 63 0.0014 36.3 14.9 146 59-212 338-515 (534)
489 PF06433 Me-amine-dh_H: Methyl 74.9 1.1E+02 0.0024 31.7 17.7 202 56-273 98-339 (342)
490 PF14583 Pectate_lyase22: Olig 74.3 67 0.0014 33.9 13.1 84 59-142 42-131 (386)
491 PF11715 Nup160: Nucleoporin N 74.3 20 0.00044 40.4 10.6 66 63-128 157-253 (547)
492 PF02897 Peptidase_S9_N: Proly 73.6 1.4E+02 0.0029 32.2 27.2 147 58-211 129-312 (414)
493 COG5290 IkappaB kinase complex 73.4 77 0.0017 36.2 13.7 105 139-254 252-366 (1243)
494 KOG2047 mRNA splicing factor [ 73.0 1.7E+02 0.0036 33.0 17.2 28 540-567 246-273 (835)
495 COG1770 PtrB Protease II [Amin 73.0 1.7E+02 0.0037 33.1 18.8 198 95-334 130-349 (682)
496 PF04840 Vps16_C: Vps16, C-ter 72.8 31 0.00068 35.7 10.4 123 394-580 178-300 (319)
497 KOG3522 Predicted guanine nucl 72.4 7.8 0.00017 44.0 6.1 138 107-254 549-697 (925)
498 COG3490 Uncharacterized protei 71.9 49 0.0011 33.0 10.6 87 66-157 82-180 (366)
499 PRK10115 protease 2; Provision 71.3 2.1E+02 0.0045 33.4 22.5 109 94-207 127-254 (686)
500 PRK09782 bacteriophage N4 rece 71.1 68 0.0015 39.0 14.1 58 401-459 517-574 (987)
No 1
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-108 Score=854.91 Aligned_cols=659 Identities=52% Similarity=0.900 Sum_probs=615.3
Q ss_pred CcCCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC
Q 004914 34 EEEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (724)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (724)
+++|.++|.|+++.+..++..+.++|+..++++++.|+.+|.|++++.+|.. .+...|+.. +.+|.+++|||.
T Consensus 19 deePklkY~Ri~n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~ 91 (846)
T KOG2066|consen 19 DEEPKLKYERISNLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSD 91 (846)
T ss_pred ccCccceehhhhcccHHHHhhhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecC
Confidence 7899999999999999999999999999999999999999999999999887 555566654 778999999999
Q ss_pred CCCEEEEeccCCc-eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEeC
Q 004914 114 DGSVVINSLFTDE-KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWRT 191 (724)
Q Consensus 114 Dg~v~iwd~~~~~-~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~~ 191 (724)
||+|.|..+.+.+ ..++.+++|+.+|+++|+|++++++.|++||..| +.++.++|.|++..+ ++...|+|.++.|.|
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g 170 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG 170 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC
Confidence 9999999998855 5568999999999999999999899999999999 999999999977665 778899999999999
Q ss_pred CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeCCCCCCCCccccCCCe
Q 004914 192 SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMN 271 (724)
Q Consensus 192 ~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 271 (724)
++|||++|-+|++||+.+++.+..++.+...++++.++|.+.|.+...|++||+++|+|..++.+.+.. ..+++-.+..
T Consensus 171 ~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~~s~~-a~~~~~~~~~ 249 (846)
T KOG2066|consen 171 NLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKRSSSE-ARSFRLPSLK 249 (846)
T ss_pred cEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecccccc-cccccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999554332 2222223455
Q ss_pred EEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCCcccccc
Q 004914 272 QVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYK 351 (724)
Q Consensus 272 ~~~~~~~~~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~~~~~~~ 351 (724)
.++..+.|++++.|+|++++++++++|+|.+..+ +...++..|..++...+|++|+++..++|+++|++.+++|+++.
T Consensus 250 ~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~--~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~Dal~~~~~e~~~ 327 (846)
T KOG2066|consen 250 KVEIVSHFETSFYISGLAPLGDQLVVLGFDKDIS--EGEFTSARPSSRAKGNRPEIRIVSLNNDEICSDALIVRGFEELS 327 (846)
T ss_pred eeeeEEEeeeeeeeeccccccceeEEEeeecccc--cccccccchhhhccCCCceEEeccccchhhhhhhhhhcchhhcC
Confidence 8999999999999999999999999999987544 34456677766678889999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchhhHHHHHhcccHHHHHHHHHhcCCCc--hhHhHH
Q 004914 352 AKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRS--ELLDEV 429 (724)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~--~~~~~i 429 (724)
++||||...| +..+.|||+||+|++++++++.+|||+||+++++|++||.+++.+.... .+..+|
T Consensus 328 ~~DY~L~~~~-------------~~~~~yyIvspkDiV~a~~~~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv 394 (846)
T KOG2066|consen 328 INDYHLGGHP-------------KTEPLYYIVSPKDIVVAKERDQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKV 394 (846)
T ss_pred CccccccCCC-------------CCCceEEEecCCceEEEeecCcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHH
Confidence 9999999976 5789999999999999999999999999999999999999999887733 357899
Q ss_pred HHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHH
Q 004914 430 GSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKY 509 (724)
Q Consensus 430 ~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~ 509 (724)
|+.|++||+..|+|++||..|++++|++..+||.|+++|...+++..+.||+|+..++|++.+|+++|..|+. ++...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~--~~~~~ 472 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA--SDVKG 472 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 48999
Q ss_pred HHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHHHH
Q 004914 510 LLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREK 589 (724)
Q Consensus 510 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~~~ 589 (724)
|.+.++.||..+|++.+++++++.++....++..+.+.|++||...++|.+|+++|+++++.++|++|.+|++++.+.+.
T Consensus 473 F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~ 552 (846)
T KOG2066|consen 473 FLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQ 552 (846)
T ss_pred HHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHccChhHHHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhhH
Q 004914 590 VVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLL 669 (724)
Q Consensus 590 ~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~ll 669 (724)
+..||.++.+.++++|+++.+.++|..|+++++ +.|.+|+.||..++.++......||+.+|+|||+|++.+||
T Consensus 553 Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~------~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LL 626 (846)
T KOG2066|consen 553 IVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLE------DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLL 626 (846)
T ss_pred HHHHHccchhhHHHHHhhccccCCHHHHHHHHh------cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhh
Confidence 999999999999999999999999999999999 67899999999999999888999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCccccC
Q 004914 670 PFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEVF 724 (724)
Q Consensus 670 ~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~Ai 724 (724)
+||+++.+|++++|+++|.+.++++|.||||||||++++||.+||++|+|+++||
T Consensus 627 PFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 627 PFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAI 681 (846)
T ss_pred HHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-41 Score=352.94 Aligned_cols=591 Identities=14% Similarity=0.168 Sum_probs=419.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccc-eeEEEEcCCCCEEEEEeCCCC-----EEEEeccCC---
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAA-VNDLSFDVDGEYVGSCSDDGS-----VVINSLFTD--- 125 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~-V~~l~~s~~g~~l~s~~~Dg~-----v~iwd~~~~--- 125 (724)
..++||++++..+++|+.+|.|.+++...+.++.|+++... |..+....+..+|+|.+.|+. ++||++...
T Consensus 26 ~~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 26 NAISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred CceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 37999999999999999999999999877777888888777 666665555578999888765 899998752
Q ss_pred ---ceE---EE---eCC--C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC---CccceEeccCCCCeEEEEEe
Q 004914 126 ---EKM---KF---DYH--R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL---GYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 126 ---~~~---~~---~~~--~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---~~~~~~l~~~~~~V~~l~~~ 190 (724)
.+. ++ ... . |+.+++++.+ -..+|+|..+|.|.++..+.. |.+....+...+||+++.+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-----l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED-----LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc-----ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 122 21 122 3 8899999998 689999999999999865433 24445556678999999998
Q ss_pred --CCE-EEEEcCCcEEEEEcCCCce-EEEecCCCCCCCCCCCCCceeecCCCe-EEEEeCCeEEEEEEeeCCCCCCCCcc
Q 004914 191 --TSL-IAWANDAGVKVYDAANDQR-ITFIERPRGSPRPELLLPHLVWQDDTL-LVIGWGTYIKIASIKTNQSNVANGTY 265 (724)
Q Consensus 191 --~~~-la~~~d~~i~i~d~~~~~~-~~~i~~~~~~~~~~~~~~~l~~~~~~~-l~~g~d~~i~vw~~~~~~~~~~~~~~ 265 (724)
|.. +.+++...|.+|.+....+ ...+..++ ....|.++.++.. ++++.+..+.+|+....+.+.+.+.+
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G------~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG------ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCC------ccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCC
Confidence 443 5555678899999985442 22233322 2344555555554 89999999999999887776554421
Q ss_pred ccCCCeEEEEEEEeeeceEEEeeeecC-CceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccC
Q 004914 266 RHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPV 344 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~gi~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~ 344 (724)
..+. +-+++ +.+.++......+. + ..+.....-.+.++|+.+.-+
T Consensus 255 ---~kk~---------------~~~~~~g~~L~v~~~~~~~~-----~----s~s~ss~~~i~~~~d~~n~~v------- 300 (933)
T KOG2114|consen 255 ---EKKE---------------MLVFSFGLLLCVTTDKGTEN-----T----SLSNSSSNRIFKAYDLRNRYV------- 300 (933)
T ss_pred ---CeEE---------------EEEEecCEEEEEEccCCCCC-----c----ccCccchhheeehhhhcCccc-------
Confidence 0111 12344 44444443211100 0 011222345666666665422
Q ss_pred CccccccccCcccccccCCCCCCCCCcccCCCC-CEEEEECCCcEEEEeeCCchhhHHHHHhcccHHHHHHHHHhcCCCc
Q 004914 345 LGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDE-PLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRS 423 (724)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~v~s~~~i~~~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~ 423 (724)
.+++-.-.+.- ....++ +.+++.+.+.+..+.+++.+.++..|++|+.|..|+++|+......
T Consensus 301 ----~ys~vl~~l~d------------~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~ 364 (933)
T KOG2114|consen 301 ----LYSSVLEDLSD------------NLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDE 364 (933)
T ss_pred ----chHHhHHHHHH------------HHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCH
Confidence 11110000000 001355 5566666666788899999999999999999999999999999989
Q ss_pred hhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCC-CCCCCHHHHHHHHHHHHc
Q 004914 424 ELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTE-NPRLRDTAYEVALVALAT 502 (724)
Q Consensus 424 ~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~-~~~l~~~~~~~~L~~~l~ 502 (724)
+.+.+|.++|+++||.+|+|++|+.+|.++++ ..+.++||.+|++++.|.+|+.||... ...++...++++|.+++.
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999 688999999999999999999999985 456777777777776666
Q ss_pred CCccHHHHHHHhhcCC--CCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--chhhHHHH
Q 004914 503 NPSFHKYLLSTVKSWP--PVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK--PYIFDFIE 578 (724)
Q Consensus 503 ~~~~~~~~~~~i~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~--~~~~~~i~ 578 (724)
++.|.+++.++|++.+ .-.||++.++..+++.. +++.+..|..+.++|+++|+++++..+ .+|+.||+
T Consensus 443 Klkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sn--------yl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCDKGEWFFDVETALEILRKSN--------YLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred HhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhC--------hHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHh
Confidence 6679999999999876 24689999999999887 999999999999999999999999765 44999999
Q ss_pred hcCCh---HHHHHHHHHHHccChhHHHHHhhhcC---CC---------CC-hHHHHHHHhcccccCCchhHHHHHHHHHH
Q 004914 579 NHNLH---DAIREKVVQLMLLDCKRAVSLLIQNK---DL---------IT-PSEVVTQLLNARDKCDSRYFLHLYLHALF 642 (724)
Q Consensus 579 ~~~l~---~~~~~~~~~L~~~~~~~~~~ll~~~~---~~---------~~-~~~vi~~l~~~~~~~~~~~~l~~yL~~l~ 642 (724)
+.++. ....++.+.|++++|++|+++|++.. .. ++ +.+.+..+. .++..+..||+.+.
T Consensus 515 slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~------~~~~~~~~Fl~~~~ 588 (933)
T KOG2114|consen 515 SLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFS------QNYQILLNFLESMS 588 (933)
T ss_pred cCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeec------cCHHHHHHHHHHHH
Confidence 99854 44679999999999999999999821 10 11 222222232 34555566666555
Q ss_pred hcCCCCCh--h--hHHHHHHH-----------------------------------------H----HhcchhhhHHHhh
Q 004914 643 EVNPHAGK--D--FHDMQVEL-----------------------------------------Y----ADYDLKMLLPFLR 673 (724)
Q Consensus 643 ~~~~~~~~--~--~~~~lv~L-----------------------------------------y----~~~~~~~ll~fL~ 673 (724)
+..+.... . ++...+.| | ++--|++-..+++
T Consensus 589 E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~~sdpq~kt~~~~~l~~~~~~~~~~~~~~~l~k 668 (933)
T KOG2114|consen 589 EISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGFDSDPQVKTTTLYDLYLELDAEDVPERTIILRK 668 (933)
T ss_pred hcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhcccccChhhhhccchhhHHHHHhhhcccccchhhh
Confidence 44332211 1 11111111 1 1111222222222
Q ss_pred h-------cCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCcccc
Q 004914 674 S-------SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEV 723 (724)
Q Consensus 674 ~-------~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~A 723 (724)
. .++||.+.||-+|+..++.++..|+|+|++...+-+...... .|++.+
T Consensus 669 sn~l~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~q~-~d~E~~ 724 (933)
T KOG2114|consen 669 SNKLLDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQQI-SDPETV 724 (933)
T ss_pred hcchhhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHHHh-hChHHH
Confidence 2 256899999999999999999999999999999877766653 666654
No 3
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-26 Score=255.88 Aligned_cols=577 Identities=18% Similarity=0.209 Sum_probs=344.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe----eEE------Ec--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ----VKE------FP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~----~~~------~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
|++..|+.+.+|+.+|.+.+|...... ... +. -+..+|+.+...+.-..+.+-+ |+.+.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 777789999999999999999883221 111 11 1346777776666555444443 5667777666522
Q ss_pred eEEEeCCC-CeeEEEeCCCCCC-CCCCEEEEecCCCeEEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEEcC-C
Q 004914 127 KMKFDYHR-PMKAISLDPDYTR-KMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWAND-A 200 (724)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~-~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~~d-~ 200 (724)
......+- ++...++.-.-.+ +...+.++.+....+.. ..|.+....++.. -.....+.+|+|.++.++.. .
T Consensus 100 ~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~ 177 (877)
T KOG2063|consen 100 PVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIR--FFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKS 177 (877)
T ss_pred ccccccccccceeeccccccccCCcceEEEEeeccceEEE--EEecCCCceEEEEecccccchhhhcccceeEEEeecce
Confidence 21111111 2222222111000 01134444442222221 1233433322222 23445567788888888744 3
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEe
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASF 279 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (724)
...+|...++.....+ +.+... ....|.++- .++..++.|.|+...+.|.......++.-..+..| ....+
T Consensus 178 ~~ii~~~~~~~~~~~~--~s~~~~-~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~ws~~P-----~~v~~ 249 (877)
T KOG2063|consen 178 YYIINNTSKGVGPNLF--PSSMDN-ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVWSEVP-----LSVVV 249 (877)
T ss_pred eEEEecCCCcccccee--eecccc-ccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEecccc-----hhhcc
Confidence 3444443333111111 111110 123344444 56668888888888888854332121111111111 11111
Q ss_pred eeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCCccccccccCccccc
Q 004914 280 QTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAH 359 (724)
Q Consensus 280 ~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (724)
+.++.|+ ..+ .-+.|.+..+... ..+++ .++ +-+.|..
T Consensus 250 ~~PYlIa-------------~~~----------------------~~veI~s~~~~ql-vQSI~--~~~----~~~~l~s 287 (877)
T KOG2063|consen 250 ESPYLIA-------------LLD----------------------RSVEIRSKLDGQL-VQSIT--PLS----NGRSLLS 287 (877)
T ss_pred cCceEEE-------------Ecc----------------------ccEEEEeccCHHH-hhccc--ccc----ccceeee
Confidence 2222222 110 0122222111100 00000 000 0011111
Q ss_pred ccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCC-chhhHHHHHhcccHHHHHHHHHhcCC-Cc---hhHhHHHHHH-
Q 004914 360 APFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRD-AEDHIAWLLEHGWHEKALAAVEAGQG-RS---ELLDEVGSRY- 433 (724)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~-~~d~i~~ll~~~~~~~Al~~~~~~~~-~~---~~~~~i~~~~- 433 (724)
+..+++|+.+...+++.++.+ ...+++.|++.++|++|+.+++.... .+ .....+...+
T Consensus 288 ---------------~~~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~ 352 (877)
T KOG2063|consen 288 ---------------AHNGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILID 352 (877)
T ss_pred ---------------cCCcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 345889999999999999999 99999999999999999999997664 22 2244555556
Q ss_pred HHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhh--cCCCC--cccccCc---------------------------
Q 004914 434 LDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAH--LRQLP--VLVPYMP--------------------------- 482 (724)
Q Consensus 434 ~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~--~~~l~--~L~~~l~--------------------------- 482 (724)
+-.+|.+++|++|++++.+.... .-.++.-|-+ ..... ...-.+|
T Consensus 353 a~~lf~q~~f~ea~~~F~~~~~d----~~~vi~lfP~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~ 428 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKSEID----PRHVISLFPDLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRR 428 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhhccC----hHHHHHhchhhcCCcccccceeeeccCchhhhccCcccchhhhhhhHhHHHHH
Confidence 67799999999999987664432 1222222221 00000 0000111
Q ss_pred ----------------------CC-----CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhh
Q 004914 483 ----------------------TE-----NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQL 535 (724)
Q Consensus 483 ----------------------~~-----~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 535 (724)
.. ....-..+-++++.+|+.. ++..-..++..- ....+++.+...+..
T Consensus 429 ~~~~~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDttLlk~Yl~~--n~~~v~~llrle-n~~c~vee~e~~L~k-- 503 (877)
T KOG2063|consen 429 EENKKLNKYKMLYMNYFKNTLISELLKSDLNDILELIDTTLLKCYLET--NPGLVGPLLRLE-NNHCDVEEIETVLKK-- 503 (877)
T ss_pred HHHHHHHHhhhhHHhhhhccCcchhhccchHHHHHHHHHHHHHHHHhc--Cchhhhhhhhcc-CCCcchHHHHHHHHh--
Confidence 00 0001123344444444443 222222222211 112333333222222
Q ss_pred ccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC-------------chhhHHHHhcC--ChHHHHHHHHHHHccChhH
Q 004914 536 NSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-------------PYIFDFIENHN--LHDAIREKVVQLMLLDCKR 600 (724)
Q Consensus 536 ~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-------------~~~~~~i~~~~--l~~~~~~~~~~L~~~~~~~ 600 (724)
..-++.|++||..+|+|++||+.|.++.+ ..+.+|+++.. ..+++.++..|+++.+|+.
T Consensus 504 ------~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~ 577 (877)
T KOG2063|consen 504 ------SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA 577 (877)
T ss_pred ------cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh
Confidence 33678999999999999999999999765 22678888876 4599999999999999999
Q ss_pred HHHHhhh----cCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-------------
Q 004914 601 AVSLLIQ----NKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY------------- 663 (724)
Q Consensus 601 ~~~ll~~----~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~------------- 663 (724)
++++|+. ....+++++|+..|.. ..+.++..|||+++..+...+..+|+.++.||++.
T Consensus 578 gi~Ift~~~~~~~~sis~~~Vl~~l~~-----~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 578 GIQIFTSEDKQEAESISRDDVLNYLKS-----KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred heeeeeccChhhhccCCHHHHHHHhhh-----hCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhcccc
Confidence 9999998 5567999999999986 56888999999999988888999999999999642
Q ss_pred ----c-hhhhHHHhhhcCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCcccc
Q 004914 664 ----D-LKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEV 723 (724)
Q Consensus 664 ----~-~~~ll~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~A 723 (724)
. +++|+.||+.+..|+++..|......+|+++++.|++|||+|++||.++++.|+|+++|
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A 717 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAA 717 (877)
T ss_pred chhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHH
Confidence 2 78999999999999999999988999999999999999999999999999999999987
No 4
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-27 Score=250.42 Aligned_cols=336 Identities=19% Similarity=0.214 Sum_probs=268.9
Q ss_pred ccCCCCCEEEEECCCcEEEEeeCCchh-hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhh
Q 004914 372 WAAGDEPLYYIVSPKDVVIAKPRDAED-HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLC 450 (724)
Q Consensus 372 ~~~~~~~~~~v~s~~~i~~~~~~~~~d-~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~ 450 (724)
++....+.+|+++...++....-+... .+..|+++|.|+.|+++|... ++.++.|..++++.+|..++|..||+
T Consensus 336 v~D~va~~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~~---p~~le~Vl~~qAdf~f~~k~y~~AA~-- 410 (911)
T KOG2034|consen 336 VSDSVAETFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIARTR---PDALETVLLKQADFLFQDKEYLRAAE-- 410 (911)
T ss_pred eeccccceEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccCC---HHHHHHHHHHHHHHHHhhhHHHHHHH--
Confidence 334577899999999999886666654 559999999999999998766 35688999999999999999999999
Q ss_pred hhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCC--HHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHH
Q 004914 451 PKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLR--DTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVI 528 (724)
Q Consensus 451 ~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~--~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~ 528 (724)
+++.+...||+|++||+..++-+.|..||-++..+++ +.+...+|..|+.. .+++.++... ..|-+...
T Consensus 411 --~yA~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLle-----l~L~~Ln~l~--~~de~~~e 481 (911)
T KOG2034|consen 411 --IYAETLSSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLE-----LYLEQLNDLD--STDEEALE 481 (911)
T ss_pred --HHHHhhhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH-----HHHHHHhccc--ccChhHHH
Confidence 5665578999999999999999999999988755555 45666678888763 3555555442 22211111
Q ss_pred H------HHh-------hhhccCcchHHHHH---------HHHHHHHhcCCHHHHHHHHHHcCCch-hhHHHHhcCChHH
Q 004914 529 S------AIE-------PQLNSSSMTDALKE---------ALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHNLHDA 585 (724)
Q Consensus 529 ~------~~~-------~~~~~~~~~~~~~~---------~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~l~~~ 585 (724)
+ ... .+......+++.++ .+.++....++|+.++.+|++.+..+ +++.+.++...+.
T Consensus 482 n~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el 561 (911)
T KOG2034|consen 482 NWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRNPEL 561 (911)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 1 000 01111223333333 56667888999999999999998755 9999999999999
Q ss_pred HHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhccc--ccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004914 586 IREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNAR--DKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY 663 (724)
Q Consensus 586 ~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~--~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~ 663 (724)
++++++.|+.++|.+++..|+.+.+.+++..+++.|.-.. ..........+||++++.+.+...+..||.++.||+++
T Consensus 562 ~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~ 641 (911)
T KOG2034|consen 562 FYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKH 641 (911)
T ss_pred HHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcC
Confidence 9999999999999999999999988888888888776331 11123466679999999999999999999999999999
Q ss_pred chhhhHHHhhhc------CCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCcccc
Q 004914 664 DLKMLLPFLRSS------QHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEV 723 (724)
Q Consensus 664 ~~~~ll~fL~~~------~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~A 723 (724)
.|+.|+-+|... .+||+..|+++|.+++..+++||||++|+.+.+|+.+.++- |++.|
T Consensus 642 ~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~--d~dla 705 (911)
T KOG2034|consen 642 ERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQF--DIDLA 705 (911)
T ss_pred CccchHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhc--CHHHH
Confidence 999998888763 57999999999999999999999999999999999999983 67766
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=215.24 Aligned_cols=245 Identities=17% Similarity=0.220 Sum_probs=188.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE--E
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM--K 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~--~ 129 (724)
++|.| |+|+|..||+|+.|.++++||+ +..+..+.++|...|.|++|+|||+.||||+.||+|++||..+++.. .
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 45666 8889999999999999999999 55667889999999999999999999999999999999999987653 6
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC-CEEEEE-cCCcEEEEE
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWA-NDAGVKVYD 206 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-~~la~~-~d~~i~i~d 206 (724)
+.+|+ .|++++|.|--....++.+++++.||.+++|+.. .+....++.+|..+|+|+.|.| .+|+++ .|++|++|+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWR 274 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEE
Confidence 89999 9999999985444457899999999999999986 5677888899999999999995 677777 699999999
Q ss_pred cCCCceEEEecCCC------------------------------------------------------------------
Q 004914 207 AANDQRITFIERPR------------------------------------------------------------------ 220 (724)
Q Consensus 207 ~~~~~~~~~i~~~~------------------------------------------------------------------ 220 (724)
...|.++..+..+.
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 88764332222111
Q ss_pred -------CCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeec
Q 004914 221 -------GSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPF 291 (724)
Q Consensus 221 -------~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~ 291 (724)
...+|...+..+.| +++.+++++ .|.+|++|+-++++-...+..+ + ..+-.++|.
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH---------v-------~~VYqvaws 418 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH---------V-------AAVYQVAWS 418 (480)
T ss_pred ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc---------c-------ceeEEEEec
Confidence 01123344556667 688899999 9999999999988744332211 1 123446677
Q ss_pred CCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCccc
Q 004914 292 GDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDEL 337 (724)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~ 337 (724)
.|.-++++.+ +..-|+|.+++.+.+
T Consensus 419 aDsRLlVS~S---------------------kDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 419 ADSRLLVSGS---------------------KDSTLKVWDVRTKKL 443 (480)
T ss_pred cCccEEEEcC---------------------CCceEEEEEeeeeee
Confidence 7655555543 246677777776554
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=6.2e-24 Score=224.40 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=174.6
Q ss_pred ceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEE
Q 004914 41 YQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI 119 (724)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (724)
+..|.+++-.. .|+|+.++|++++.|++|++|++ +...+..+++|..+|+++.|+|-|-++||||.|++.++
T Consensus 447 L~GH~GPVyg~-------sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 447 LYGHSGPVYGC-------SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred eecCCCceeee-------eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 56666666444 69999999999999999999999 45557788999999999999999999999999999999
Q ss_pred EeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEE
Q 004914 120 NSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA 195 (724)
Q Consensus 120 wd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la 195 (724)
|....... ..+.+|- -|.|+.|||+ +.++++|+.|.+|++|+.. .|..++++.+|.++|++++|+ |.+++
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPN-----s~Y~aTGSsD~tVRlWDv~-~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPN-----SNYVATGSSDRTVRLWDVS-TGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eecccCCchhhhcccccccceEEECCc-----ccccccCCCCceEEEEEcC-CCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99987554 4567777 9999999999 8999999999999999986 788899999999999999999 89999
Q ss_pred EE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 196 WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 196 ~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++ .|+.|.+||+.++..+..+..+. ..+.++.| .+|..|++| .|++|++||+....
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~l~~Ht------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQLKGHT------GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecccCCcEEEEEcCCCcchhhhhccc------CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 98 69999999999999888765553 35889999 789999999 89999999997543
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=2e-23 Score=207.52 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=180.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------ 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------ 126 (724)
..|++ |+.+|..||+|+.+|.+++|+.+|..+.++..|.++|.++.|+.+|++|++++.||++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 34666 5556999999999999999999999999999999999999999999999999999999999975432
Q ss_pred ------------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 127 ------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 127 ------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
..++.+|. +|.++.|+|. +.++++++.|+++++|...
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-----g~LLaS~SdD~TlkiWs~~- 389 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-----GSLLASCSDDGTLKIWSMG- 389 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-----CceEEEecCCCeeEeeecC-
Confidence 22345677 9999999999 8999999999999999875
Q ss_pred CCccceEeccCCCCeEEEEEeC-----------CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC
Q 004914 170 LGYRDQVLHSGEGPVHVVKWRT-----------SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD 236 (724)
Q Consensus 170 ~~~~~~~l~~~~~~V~~l~~~~-----------~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~ 236 (724)
.+.....++.|...|..+.|+| ..++++ .|++|++||+..+.++..+..+. ..+.+++| ++
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~------~pVysvafS~~ 463 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ------EPVYSVAFSPN 463 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC------CceEEEEecCC
Confidence 4566677888998899999982 455555 79999999999999999865554 35788999 78
Q ss_pred CCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecC-CceEEEEee
Q 004914 237 DTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYI 301 (724)
Q Consensus 237 ~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~-~~l~~l~~~ 301 (724)
+.++++| .|+.|.+|+++++. +.+.+..+..|-.+.|-. +..+..++.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~-----------------l~~s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGK-----------------LVKSYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred CcEEEecCCCCeeEeccccchh-----------------eeEeecCCCeEEEEEEcCCCCEEEEEec
Confidence 9999999 99999999998865 344555566677777765 555555554
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.4e-24 Score=204.69 Aligned_cols=188 Identities=19% Similarity=0.263 Sum_probs=152.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCe-eEEEcCCccceeEEEEcC-----CCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQ-VKEFPAHTAAVNDLSFDV-----DGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~-~~~~~~h~~~V~~l~~s~-----~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+|+|||+.||+|+.||+|++||. +|++ .+.+.+|...|++++|.| ..++++|++.||.|+|||+..+.+ ..+
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence 48999999999999999999998 5655 478999999999999965 677999999999999999988665 467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc-----------------------------------------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK----------------------------------------- 168 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~----------------------------------------- 168 (724)
.+|. +|+|+.|-.+ .++++|+.|++|++|+..
T Consensus 244 sgHT~~VTCvrwGG~------gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGE------GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred ccCccceEEEEEcCC------ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 8888 9999999766 678888888888888410
Q ss_pred ---------------------------------cCC----ccceEeccCCCCeEEEEEe--CCEEEEEc-CCcEEEEEcC
Q 004914 169 ---------------------------------WLG----YRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVYDAA 208 (724)
Q Consensus 169 ---------------------------------~~~----~~~~~l~~~~~~V~~l~~~--~~~la~~~-d~~i~i~d~~ 208 (724)
|.. +......+|..-|..+.|+ +.+||+++ |.+|++|+.+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence 111 1222344577788899999 68899885 9999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+|+.+..+..+ ...+..++| .+.++|++| .|.++++|++++.+.
T Consensus 398 tGk~lasfRGH------v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 398 TGKFLASFRGH------VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred Ccchhhhhhhc------cceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 99998876544 345788999 567788888 889999999998664
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=210.20 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=169.2
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccC-CceEEEeC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFT-DEKMKFDY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~ 132 (724)
.+.++.+++.||+|+.+|.+++|+. +.+.+.++.+|++.|.++.|+|. +..++||+.||++++|++.+ ..+..+.+
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g 259 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG 259 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc
Confidence 3348889999999999999999999 67778999999999999999997 55899999999999999998 55667899
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
|. .|..|+|+|+ |+++++++.|.+-++|+.. .+...-...+|..+|.+++|+ |.++++| .|..-+|||++
T Consensus 260 H~~RVs~VafHPs-----G~~L~TasfD~tWRlWD~~-tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 260 HLARVSRVAFHPS-----GKFLGTASFDSTWRLWDLE-TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred chhhheeeeecCC-----Cceeeecccccchhhcccc-cchhhHhhcccccccceeEecCCCceeeccCccchhheeecc
Confidence 99 9999999999 9999999999999999886 455555567899999999999 8899888 69999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+|.++-++..+.. .+..+.| ++|..+++| .|++++|||++.+...
T Consensus 334 tgr~im~L~gH~k------~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 334 TGRCIMFLAGHIK------EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred cCcEEEEeccccc------ceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 9999998776543 4778999 899999999 9999999999987753
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.1e-24 Score=209.05 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=168.6
Q ss_pred ceEE--EEec--CCEEEEEeCCCeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEE
Q 004914 56 AASC--VAVA--ERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMK 129 (724)
Q Consensus 56 ~i~~--~s~~--~~~la~g~~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~ 129 (724)
.+.+ |.|. +..+|+|+.||++++|+.++ .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++. +..
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~ 298 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL 298 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh
Confidence 3444 7775 56899999999999999965 6788999999999999999999999999999999999999965 456
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEE
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVY 205 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~ 205 (724)
..+|. +|.+++|+|+ |..+++|+.|..-++|+.+ .|.+...+.+|..+|.++.|+ |..+|++ +|++++||
T Consensus 299 QEGHs~~v~~iaf~~D-----GSL~~tGGlD~~~RvWDlR-tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 299 QEGHSKGVFSIAFQPD-----GSLAATGGLDSLGRVWDLR-TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred hcccccccceeEecCC-----CceeeccCccchhheeecc-cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 78888 9999999999 9999999999999999998 789999999999999999999 6788888 79999999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceeec--CCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
|++..+.+.+++.+. ..+..+.|. .|.+|+++ .|+++++|.-++.+..
T Consensus 373 DLR~r~~ly~ipAH~------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHS------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred eecccccceeccccc------chhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 999988888866554 457788883 67888888 9999999988776654
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=4.5e-21 Score=200.66 Aligned_cols=192 Identities=22% Similarity=0.306 Sum_probs=160.7
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
.+++| .+|||+++|+|+.||+|+|||. .|.++.+|..|+..|+.++|+..|+.++|.+-||+|+.||+..... .++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 34555 6789999999999999999999 6778899999999999999999999999999999999999988554 456
Q ss_pred eCCC--CeeEEEeCCCCCCCCCCEEEEecCCCe-EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEE
Q 004914 131 DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (724)
Q Consensus 131 ~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i 204 (724)
.... ...|++.+|. |..++.|+.|.- |.+|+.. .|+...++.+|+|||.+++|+ |..++++ .|.+||+
T Consensus 431 t~P~p~QfscvavD~s-----GelV~AG~~d~F~IfvWS~q-TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPS-----GELVCAGAQDSFEIFVWSVQ-TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred cCCCceeeeEEEEcCC-----CCEEEeeccceEEEEEEEee-cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 6665 6789999998 888888888864 9999986 788899999999999999988 7888888 6999999
Q ss_pred EEcCCC-ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 205 YDAAND-QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 205 ~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
||+-.. ....+++... -+..++| ++|..++++ -||.|.+||+......
T Consensus 505 W~if~s~~~vEtl~i~s-------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRS-------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEeeccCceeeeEeecc-------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 998754 2333443332 2456778 789999998 8999999999766443
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-22 Score=186.68 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=160.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC--C-
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH--R- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~--~- 134 (724)
.++++|++.++|+.||++++||+ .|+..+.|.+|..-|.+++|++|.+.++||+.|.+|++|+..+....++..+ +
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 47889999999999999999999 5677899999999999999999999999999999999999998777766444 5
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
.|.|+.|+|+- ....|++++.|++|++|+.+ .-+....+.+|.+.++.+.++ |.+.+.+ .||.+.+||++.++
T Consensus 150 WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~-~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNE---SNPIIVSASWDKTVKVWNLR-NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCC---CCcEEEEccCCceEEEEccC-CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 99999999982 25789999999999999886 345566778899999999999 7888877 69999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceeec-CCCeEEEEeCCeEEEEEEeeCCC
Q 004914 212 RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
.+..++... .+.+++|. +...|+.+.+..|+|||+.++..
T Consensus 226 ~lysl~a~~-------~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 226 NLYSLEAFD-------IVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred eeEeccCCC-------eEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 887755443 47788894 45555555888899999987643
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=9e-21 Score=177.03 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=154.3
Q ss_pred cCCEEEEEeCCCeEEEEecC------CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-
Q 004914 63 AERMIALGTHAGTVHILDFL------GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR- 134 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~- 134 (724)
+...+.+++.|.++.+|+++ |..++.+.+|+..|+.+..+++|++.+|++.||++++||+.+++. ..+.+|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 46789999999999999984 445788999999999999999999999999999999999999655 5688999
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC--CCCeEEEEEeC----CEEEEE-cCCcEEEEEc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWRT----SLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~--~~~V~~l~~~~----~~la~~-~d~~i~i~d~ 207 (724)
-|.+++|+|+ ++++++|+.|.++.+|+.. +....++..+ .+.|+++.|+| .+|+.+ .|++|++||+
T Consensus 107 dVlsva~s~d-----n~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 107 DVLSVAFSTD-----NRQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred ceEEEEecCC-----CceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 9999999999 8999999999999999874 4444444443 78899999994 345544 7999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
++-+....+ ++|..++..+.+ +||..+++| .||.+.+||++.+...
T Consensus 180 ~~~~l~~~~------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 180 RNCQLRTTF------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred CCcchhhcc------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 987776653 345556777888 789999999 9999999999986643
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.88 E-value=3.9e-21 Score=203.31 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=165.9
Q ss_pred eEE--EEecCCEEEEEeCCCeEEEEecCCC--------------------------------eeEEEcCCccceeEEEEc
Q 004914 57 ASC--VAVAERMIALGTHAGTVHILDFLGN--------------------------------QVKEFPAHTAAVNDLSFD 102 (724)
Q Consensus 57 i~~--~s~~~~~la~g~~dg~I~i~d~~~~--------------------------------~~~~~~~h~~~V~~l~~s 102 (724)
++| ++.++.++|.|..|..|++|.++.. ..+++.+|+++|.+++|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 455 7778999999999999999987520 023578899999999999
Q ss_pred CCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC
Q 004914 103 VDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG 180 (724)
Q Consensus 103 ~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~ 180 (724)
|+.++|+|||+|++|++|++.+..+ ..+.+|. ||+.+.|+|. |-+||+++.|++-++|... .....+++.+|
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----GyYFatas~D~tArLWs~d-~~~PlRifagh 534 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----GYYFATASHDQTARLWSTD-HNKPLRIFAGH 534 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----ceEEEecCCCceeeeeecc-cCCchhhhccc
Confidence 9999999999999999999999655 4578888 9999999998 8999999999999999876 35778888999
Q ss_pred CCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 181 EGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 181 ~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
-+-|.|+.|+ ..+++++ +|.+||+||+.+|..+..+..+. ..+.++++ ++|..|++| .|+.|.+||+..
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK------GPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC------CceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999 4789988 69999999999999998875544 45778888 799999999 999999999988
Q ss_pred CCCC
Q 004914 256 NQSN 259 (724)
Q Consensus 256 ~~~~ 259 (724)
+...
T Consensus 609 ~~~v 612 (707)
T KOG0263|consen 609 GSLV 612 (707)
T ss_pred Ccch
Confidence 6644
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=5e-21 Score=184.06 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=165.0
Q ss_pred CceEEE--EecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE
Q 004914 55 DAASCV--AVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (724)
Q Consensus 55 ~~i~~~--s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (724)
+.|.|+ .|...++++|+.|++|.|||+ +|+...++.+|...|..+++|+...+++|++.|+.|+.||+..++++ .+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY 231 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh
Confidence 446664 456779999999999999999 67777889999999999999999999999999999999999987765 46
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEEcCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~~d~~i~i~d 206 (724)
.+|- .|.|++.+|. -+.+++|+.|.++++|+.+ ......++.+|.++|..+.+. |+++.++.|++|++||
T Consensus 232 hGHlS~V~~L~lhPT-----ldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 232 HGHLSGVYCLDLHPT-----LDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred ccccceeEEEecccc-----ceeEEecCCcceEEEeeec-ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 7777 9999999998 6899999999999999997 567788899999999999988 6788788999999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQSN 259 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~~ 259 (724)
++.|+...++..+... +.+++. +....++++..+.|+.|++..+.-.
T Consensus 306 l~agkt~~tlt~hkks------vral~lhP~e~~fASas~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 306 LRAGKTMITLTHHKKS------VRALCLHPKENLFASASPDNIKQWKLPEGEFL 353 (460)
T ss_pred eccCceeEeeecccce------eeEEecCCchhhhhccCCccceeccCCccchh
Confidence 9999988887666533 445555 4567788888899999998776543
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=176.63 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=158.3
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCce-EEEeC
Q 004914 57 ASCVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEK-MKFDY 132 (724)
Q Consensus 57 i~~~s~-~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~ 132 (724)
++|+.+ +...|++|+.|.+..+||+ +|+.+..|.+|.+-|.+++++| +++.++||+-|+..++||++.+.+ .+|.+
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 556443 6778889999999999999 7888899999999999999999 999999999999999999999665 57899
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
|. -|++|+|.|+ |.-|++|+.|++.++|+.+- .....++.. ...+|++++|+ |+++..+ .|.++.+||
T Consensus 228 hesDINsv~ffP~-----G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 228 HESDINSVRFFPS-----GDAFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred cccccceEEEccC-----CCeeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 99 9999999999 89999999999999999873 344444433 24689999999 8888877 899999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
.-.++.+..+..|. ..+.++.. ++|..+++| ||..++||.
T Consensus 302 tlk~e~vg~L~GHe------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKGERVGVLAGHE------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccceEEEeeccC------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999888866544 45777777 789999999 999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=5e-20 Score=173.04 Aligned_cols=213 Identities=18% Similarity=0.230 Sum_probs=178.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC--c-----eEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--E-----KMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~-----~~~~ 130 (724)
.|+++++.|++++.||.+.|||. ++++++.+......|..++|+|.|+++|+|+-|....||++.+. + ...+
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 48889999999999999999999 77888888888889999999999999999999999999999863 1 2347
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CE-EEEEcCCcEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SL-IAWANDAGVKVY 205 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~-la~~~d~~i~i~ 205 (724)
.+|. .+.|+.|.++ ..+++|+.|.+..+|+.. .+.+...+++|.+-|.++++.+ +. +.++.|+..++|
T Consensus 142 ~gHtgylScC~f~dD------~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDD------NHILTGSGDMTCALWDIE-TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred cCccceeEEEEEcCC------CceEecCCCceEEEEEcc-cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 8888 9999999988 899999999999999996 7888999999999999999983 44 445589999999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeece
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSY 283 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (724)
|++.+.+...++.+. .-+.++.| ++|.-+++| .|++.|+||++..+.. .+|+.+-
T Consensus 215 D~R~~~c~qtF~ghe------sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-----------------a~ys~~~ 271 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHE------SDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-----------------AVYSHDS 271 (343)
T ss_pred eccCcceeEeecccc------cccceEEEccCCCeeeecCCCceeEEEeecCCcEE-----------------eeeccCc
Confidence 999999998876554 34778888 899999999 8889999999986532 2344445
Q ss_pred EEEeeeecC----CceEEEEee
Q 004914 284 YISGIAPFG----DCLVVLAYI 301 (724)
Q Consensus 284 ~i~gi~~~~----~~l~~l~~~ 301 (724)
.++|+.+.. ..+++.+|.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ccCCceeEEEcccccEEEeeec
Confidence 555554433 777777775
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.86 E-value=1.9e-21 Score=190.16 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=163.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCc-cceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ceEEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~-~ 135 (724)
.|+++|.++++|+.+|.|++|+.+.+.++.+.+|. ..|++++|+|+...++|||+||+|+|||.... +...+.+|. -
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 38889999999999999999999888888888866 89999999999999999999999999999874 445678999 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|+|++|+|. ...+++|+.|..|++|+.+ .+.+..+++.|+..|.++.|+ +++++++ .|..+++||+++.+.
T Consensus 225 VksvdWHP~-----kgLiasgskDnlVKlWDpr-Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 225 VKSVDWHPT-----KGLIASGSKDNLVKLWDPR-SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cceeccCCc-----cceeEEccCCceeEeecCC-CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 999999999 6899999999999999997 788899999999999999999 6888887 699999999998777
Q ss_pred EEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+..+. ..+.++.| ....+|++| +||.|..|.+....
T Consensus 299 l~~~r~Hk------kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 299 LFTYRGHK------KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred HHHhhcch------hhheeeccccccccceeeccCCCceEEEeccccc
Confidence 77655444 34677888 356777777 99999999987443
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.86 E-value=2.8e-21 Score=184.88 Aligned_cols=192 Identities=19% Similarity=0.323 Sum_probs=165.3
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce----EE
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK----MK 129 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~----~~ 129 (724)
+++.|+..+.+.|++|++|.+|++||. +|.++.++-.|...|..+.|+ ..+++|+|.|.++.+||+.+..- ..
T Consensus 238 GSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 238 GSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 778999999999999999999999999 788889999999999999998 56899999999999999987432 24
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEc
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~ 207 (724)
+.+|+ .|+.|.|+. +++++++.|.++++|+.. .+....++++|...|-|+.+.|+++++| +|.+|++||+
T Consensus 316 LvGHrAaVNvVdfd~-------kyIVsASgDRTikvW~~s-t~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD-------KYIVSASGDRTIKVWSTS-TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred Hhhhhhheeeecccc-------ceEEEecCCceEEEEecc-ceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence 67888 999999864 599999999999999886 6778889999999999999999999888 7999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCCCCCCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSNVANG 263 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~ 263 (724)
..|.++..++.+.. .+.++.|.+ ..+++| .||+|+|||+.+...+.+..
T Consensus 388 ~~G~cLRvLeGHEe------LvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 388 ECGACLRVLEGHEE------LVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred cccHHHHHHhchHH------hhhheeecC-ceeeeccccceEEEEecccccCCcccc
Confidence 99999988666543 466788854 556666 99999999999887664443
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=2e-19 Score=173.97 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=149.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (724)
+++.+ ++|+.+++|+|+.|..-++|+. +|.....+.+|..+|+++.|+.+|.+||||+.+|.|+||...++... .+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 44444 6677889999999999999999 67777889999999999999999999999999999999999986654 44
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
.... .+.=+.|||. +..++.|+.||.+-+|... .+...+++.+|..++++=.|. |+.++++ .|++|++|+
T Consensus 145 ~~e~~dieWl~WHp~-----a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPR-----AHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ecccCceEEEEeccc-----ccEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 4333 7888999998 8999999999999999875 346678889999999998888 7778877 799999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
..+++++..+....+. ..+++.. ..+..++.| .++.+.+.+..+
T Consensus 219 ~ktg~p~~~~~~~e~~-----~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGL-----ELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cCCCceeEEecccccC-----cCCccccccccceeEeccCCccEEEEcccc
Confidence 9999998877643321 2333333 334444444 444454444433
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.4e-20 Score=187.35 Aligned_cols=187 Identities=17% Similarity=0.266 Sum_probs=160.9
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCCC-C
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-P 135 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~ 135 (724)
|-.-.+++++|+.|+.|++|+. ++..++.|.+|.+-|.+++.+|...+++|+|+|-+|++||..+ ....++.+|. -
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 4455679999999999999999 7788999999999999999999999999999999999999988 3456789999 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C--CEEEEE-cCCcEEEEEcCCC
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T--SLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~--~~la~~-~d~~i~i~d~~~~ 210 (724)
|.+++|.|. +.+.|++++.|++|++|+.+ ......++.+|+..|.++.+- | .+++++ .|.+++|||..+.
T Consensus 143 VMqv~fnPk----D~ntFaS~sLDrTVKVWslg-s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 143 VMQVAFNPK----DPNTFASASLDRTVKVWSLG-SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred EEEEEecCC----CccceeeeeccccEEEEEcC-CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 999999998 57899999999999999986 456778889999999999998 2 355555 7899999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.++.+++.+.. -+..++| +.=..+++| .||++|+|+-.+-.
T Consensus 218 ~CV~TLeGHt~------Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 218 SCVQTLEGHTN------NVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred HHHHHhhcccc------cceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 99999776653 3556667 445677788 99999999876643
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=179.39 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=164.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC--CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MK 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~ 129 (724)
+++.. ++..|+++|+++.|-.+.+||... .+++...+|...|.+++|-|.|.+|+|++.|.+|++|++.++-+ .+
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred cceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 33444 444689999999999999999943 44678889999999999999999999999999999999999876 57
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe------------C-----
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR------------T----- 191 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~------------~----- 191 (724)
+.+|+ .|..++.+.+ |..+++++.|.++++|... .+.....+..|+-+|.+++|. |
T Consensus 231 ~~~h~ewvr~v~v~~D-----Gti~As~s~dqtl~vW~~~-t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQD-----GTIIASCSNDQTLRVWVVA-TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred ccCchHhEEEEEecCC-----eeEEEecCCCceEEEEEec-cchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 89999 9999999999 8999999999999999775 455567788899999999997 2
Q ss_pred CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 192 SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+++..+ .|++|++||+.++.++.++.. |..+++.++| +.|++|+++ .|++++|||++.++.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~g------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVG------HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEec------ccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 477766 699999999999999998644 4568899999 678888888 889999999998654
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=165.71 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=154.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-C--CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE-eC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-G--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-DY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~~ 132 (724)
..++.|+++.||+|+. -.|++||++ + .++.++.+|++.|+.+.|..+|+++.|||+||+++|||++.-.+.+. ..
T Consensus 45 rLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~ 123 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH 123 (311)
T ss_pred eEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC
Confidence 3468889999988876 579999993 2 35789999999999999999999999999999999999999655554 44
Q ss_pred CCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 133 HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 133 ~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
..+|++|..+|+ ...+++|..+|.|++|+.+-.......+.....+|.++... |.+++.+ +.|.+.+|++-+
T Consensus 124 ~spVn~vvlhpn-----QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 124 NSPVNTVVLHPN-----QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCCcceEEecCC-----cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 449999999999 68899999999999999875444455556666788887766 8888888 678899999987
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++....+..-.....|..++....+ +++++|+++ .|.+++||+..+-
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 6554444333334445555655556 788899988 9999999998764
No 24
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.4e-18 Score=171.57 Aligned_cols=215 Identities=24% Similarity=0.237 Sum_probs=165.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceE-EEeCCC-
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM-KFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~- 134 (724)
+|..||+.+|.|...|.|++||.+.+. ++.+.+|+.+|..+.|+|.++ .+++|++|+.+++||+.+..+. .+.+|.
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD 154 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD 154 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc
Confidence 466789999999999999999975544 578899999999999999765 6788999999999999997764 578888
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCce
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQR 212 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~ 212 (724)
.|.|.+|+|. ++..+++|+.||.|++|+.+-.+. ...--.|..||..+.+- |..|+++....|++||+.+|..
T Consensus 155 YVR~g~~~~~----~~hivvtGsYDg~vrl~DtR~~~~-~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 155 YVRCGDISPA----NDHIVVTGSYDGKVRLWDTRSLTS-RVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred eeEeeccccC----CCeEEEecCCCceEEEEEeccCCc-eeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce
Confidence 9999999998 467899999999999999874332 22223477899999887 6899999989999999996654
Q ss_pred EE-EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeee
Q 004914 213 IT-FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIA 289 (724)
Q Consensus 213 ~~-~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~ 289 (724)
.. .... |.-.++|+.+ .++..|++| -|+.|++|++.+ ..+.+.+..+-.|-.++
T Consensus 230 ll~~~~~------H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-----------------~Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 230 LLTSMFN------HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN-----------------YKVVHSWKYPGPVLSIA 286 (487)
T ss_pred ehhhhhc------ccceEEEEEeecCCceEeecccccceEEEEccc-----------------eEEEEeeecccceeeEE
Confidence 43 2221 3335788888 677788877 999999999643 23455555555554444
Q ss_pred ecC-CceEEEEee
Q 004914 290 PFG-DCLVVLAYI 301 (724)
Q Consensus 290 ~~~-~~l~~l~~~ 301 (724)
-.. ++.++++-.
T Consensus 287 vs~dd~t~viGms 299 (487)
T KOG0310|consen 287 VSPDDQTVVIGMS 299 (487)
T ss_pred ecCCCceEEEecc
Confidence 444 666666643
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.3e-18 Score=182.49 Aligned_cols=195 Identities=15% Similarity=0.297 Sum_probs=153.5
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCC-CCEEEEeccCCc-eEEE
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD-GSVVINSLFTDE-KMKF 130 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D-g~v~iwd~~~~~-~~~~ 130 (724)
.++| +.+.-+.||+|-.+|...++.+. ...++.+.-...+|..++|+..|.+|+.|+.. |.+.||+..+.. +...
T Consensus 267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec
Confidence 3556 44556799999999999999994 55577777677799999999999999988764 899999999854 5677
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
++|. .+++++++|+ |+.+++|+.||.|++|+.. .+-+..++..|.+.|+++.|. |+.+.++ -||+|+.||
T Consensus 347 QgH~~~i~~l~YSpD-----gq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPD-----GQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred cccccceeeEEECCC-----CcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 8888 9999999999 9999999999999999886 577888899999999999999 7777777 599999999
Q ss_pred cCCCceEEEecCCCC--------------------------------------CCCCCCCCCceee-cCCCeEEEE-eCC
Q 004914 207 AANDQRITFIERPRG--------------------------------------SPRPELLLPHLVW-QDDTLLVIG-WGT 246 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~--------------------------------------~~~~~~~~~~l~~-~~~~~l~~g-~d~ 246 (724)
+.......++..|.. ..+|+..+.+++| +.+..|++| ||.
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 987655544443321 1234555555556 456666666 777
Q ss_pred eEEEEEEeeC
Q 004914 247 YIKIASIKTN 256 (724)
Q Consensus 247 ~i~vw~~~~~ 256 (724)
+||+|++-..
T Consensus 501 TVRiW~if~s 510 (893)
T KOG0291|consen 501 TVRIWDIFSS 510 (893)
T ss_pred eEEEEEeecc
Confidence 7777777653
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=4.4e-18 Score=178.44 Aligned_cols=210 Identities=18% Similarity=0.221 Sum_probs=168.2
Q ss_pred CCCccceeccCCCccccCC--CceEEEE--ecCCEEEEEeCCCeEEEEecCCCe-----eEEEcCCccceeEEEEcCCC-
Q 004914 36 EPRLKYQRMGGSLPSLLAN--DAASCVA--VAERMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDVDG- 105 (724)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~i~~~s--~~~~~la~g~~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~~g- 105 (724)
-|.+++-...+..+.++.+ +.+.+++ .+|-+|++|+.|.++++|.++.+. +....+|+..|.+++++..+
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 3445544555555556655 4566666 456799999999999999873222 45567899999999998765
Q ss_pred CEEEEEeCCCCEEEEeccCCc----eE------EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc
Q 004914 106 EYVGSCSDDGSVVINSLFTDE----KM------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (724)
Q Consensus 106 ~~l~s~~~Dg~v~iwd~~~~~----~~------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (724)
.+|+++|.|+++++|++...+ .. +...|. .|+||+++|+ ...+++||.|.+.++|+.. +....
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-----dkLiAT~SqDktaKiW~le-~~~l~ 498 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-----DKLIATGSQDKTAKIWDLE-QLRLL 498 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-----CceEEecccccceeeeccc-CceEE
Confidence 489999999999999998621 11 224566 9999999999 7999999999999999887 67778
Q ss_pred eEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEE
Q 004914 175 QVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIK 249 (724)
Q Consensus 175 ~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~ 249 (724)
.++.+|...|+++.|+ .++++++ .|++|+||.+.+..++++++.+.. .+-...| .++..|++| .||-|+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~------aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS------AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc------eeEeeeeeeCCcEEEeccCCCcEE
Confidence 8999999999999999 4688888 699999999999999999876653 3566777 677778777 999999
Q ss_pred EEEEeeCC
Q 004914 250 IASIKTNQ 257 (724)
Q Consensus 250 vw~~~~~~ 257 (724)
+|+++++.
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 99998864
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.84 E-value=8.1e-21 Score=185.82 Aligned_cols=189 Identities=16% Similarity=0.263 Sum_probs=161.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR- 134 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~- 134 (724)
+.+|.|+|+.|++|+..|.+.+|+..+-. -..+++|..+|+++.|+++|.+++||+.+|.|++|+..-..+..+..|.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 56799999999999999999999984432 2345789999999999999999999999999999999877776665554
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--CEEEEE-cCCcEEEEEcCCC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~la~~-~d~~i~i~d~~~~ 210 (724)
.|++++|+|+ ...|++++.||+|++|+.. ......++.+|.--|.++.|++ .+|+++ .|..|++||.+++
T Consensus 181 eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~-~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 181 EAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFR-MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhheeccCCC-----CceeEEecCCCeEEEEecc-CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 9999999998 7899999999999999875 4566677889999999999994 566666 6889999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.++.++..+.. .+..+.| .++..|+++ .|..++++|+++.+
T Consensus 255 ~cl~tlh~HKn------tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 255 SCLATLHGHKN------TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred chhhhhhhccc------eEEEEEEcCCCCeeEEccCCceEEEEehhHhH
Confidence 99988665553 4778889 677888888 88899999999544
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=163.57 Aligned_cols=206 Identities=13% Similarity=0.166 Sum_probs=161.1
Q ss_pred CCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC
Q 004914 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG 115 (724)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg 115 (724)
.|...|..+++.+..+ .|..+|+++.+|+.||+++|||+.....+..-.|..+|+++..+|+...|++|..+|
T Consensus 74 ~Pv~t~e~h~kNVtaV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred CceeEEeccCCceEEE-------EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCC
Confidence 3555566555555443 677899999999999999999996655555556889999999999999999999999
Q ss_pred CEEEEeccCCceEE--EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-----ccceEeccCCCCeEEE
Q 004914 116 SVVINSLFTDEKMK--FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-----YRDQVLHSGEGPVHVV 187 (724)
Q Consensus 116 ~v~iwd~~~~~~~~--~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-----~~~~~l~~~~~~V~~l 187 (724)
.|++||+....+.. +.... +|.+++..|+ |..++.+...|+.++|+..-.. .+...+..|.+.+..+
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d-----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPD-----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCC-----CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 99999998865543 23333 9999999999 8999999999999999764211 2233456688999999
Q ss_pred EEe--CCEEEEE-cCCcEEEEEcCCC-ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 188 KWR--TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 188 ~~~--~~~la~~-~d~~i~i~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
.++ ++++|++ +|.+++||+..+. +.-..+. ++..++....| .++.+|++| .|+.+++|++..++..
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~------gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT------GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCceeeEEEee------cCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 999 5888887 7999999999876 2222332 23346767777 688999999 8999999999987744
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=8.2e-19 Score=190.91 Aligned_cols=194 Identities=19% Similarity=0.334 Sum_probs=163.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCC--eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-Cce-
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEK- 127 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~- 127 (724)
.+++| ++++|+.++.++.++.+++|+. .+. ..+.+.+|...|++++|+|+|+++++|+.|++++|||+.. +..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 34555 7889999999999999999999 444 4566788999999999999999999999999999999944 344
Q ss_pred EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
.++.+|. .|++++|+|. ++.+++|+.|++|++|+.+ .+.....+..|.++|++++|+ |.+++++ .|+.|+
T Consensus 240 ~~l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEecc-CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 5788999 9999999999 7999999999999999997 578888999999999999999 6788777 599999
Q ss_pred EEEcCCCc--eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 204 VYDAANDQ--RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 204 i~d~~~~~--~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+||+.++. +...+...... . .+.++.| +++..++++ .|+.+++|++..+..
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~---~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENS---A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEECCCCceeeeecccCCCCC---C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 99999998 44444333221 1 3567778 788888888 677999999987654
No 30
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=2.5e-19 Score=180.13 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=143.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCe-----eEEEc-CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-----
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQ-----VKEFP-AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM----- 128 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~-----~~~~~-~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~----- 128 (724)
+.|.|-.+++|+.|-+|++||+.|-. .+.+. .-...|++++|++.|..|++.+.....+++|-.+..+.
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG 254 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG 254 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc
Confidence 56678899999999999999997643 12222 23448999999999999999988889999998764332
Q ss_pred --------EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-----CCCCeEEEEEe--CC
Q 004914 129 --------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-----GEGPVHVVKWR--TS 192 (724)
Q Consensus 129 --------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-----~~~~V~~l~~~--~~ 192 (724)
..++|. .++|.+|+|. +...|++++.||++++|+..-......++.. ..-++++++|+ |.
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred chhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence 225677 8999999998 4689999999999999988644444555542 34578899999 78
Q ss_pred EEEEE-cCCcEEEEEcCCCceEE--Eec-CCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 193 LIAWA-NDAGVKVYDAANDQRIT--FIE-RPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 193 ~la~~-~d~~i~i~d~~~~~~~~--~i~-~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+||++ .||+|.+|+..+..... .+. .|. ...-+.++.| .+|+.|++- .|+++++||++....
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~----~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL----PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred hhhhcccCCceeeeecCCcccccceEeeeccC----CCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 88888 79999999975432211 111 121 1124778999 688888877 999999999987553
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.1e-19 Score=191.91 Aligned_cols=191 Identities=19% Similarity=0.257 Sum_probs=156.9
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CC-CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
.+|+++++++++|+.|++|+|||. .. ..++.+++|...|++++|+|+|+.++||+.|++|+|||+.++++. .+..|.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 369999999999999999999999 43 567999999999999999999999999999999999999997664 689999
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCC--CeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEG--PVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~--~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
+|++++|+++ ++.+++++.||.+++|+.. .+. ....+..+.. +++.+.|+ +.+++++ .|+.+++||
T Consensus 289 ~~is~~~f~~d-----~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 289 DGISGLAFSPD-----GNLLVSASYDGTIRVWDLE-TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred CceEEEEECCC-----CCEEEEcCCCccEEEEECC-CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 9999999999 8999999999999999986 333 2345555443 59999998 6787777 578999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCcee-ecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLV-WQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~-~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+.....+..+.... ....+.. ...+..+++| .|+.|++|++.++.
T Consensus 363 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 363 LRSGKSVGTYTGHSNLV---RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred ccCCcceeeecccCCcc---eeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 99988887766554331 0111111 2578888888 99999999998754
No 32
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.6e-20 Score=173.88 Aligned_cols=187 Identities=17% Similarity=0.268 Sum_probs=152.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeE--------EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVK--------EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK 129 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~--------~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~ 129 (724)
.|+|||+++++|+.||-|-+||. +|+..+ .|--+..+|.|++|+.|...+++|+.||.|++|.+.+|.+.+
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 49999999999999999999999 554422 234478899999999999999999999999999999998764
Q ss_pred -Ee-CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 130 -FD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 130 -~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
+. .|. .|+|+.|+.+ +..+++++.|.++++.-.. .|+..+.+.+|.+.|+...|. |..+.++ +||+|+
T Consensus 300 rFdrAHtkGvt~l~FSrD-----~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRD-----NSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred HhhhhhccCeeEEEEccC-----cchhhcccccceEEEeccc-cchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 54 677 9999999999 7899999999999997664 577788889999999999998 6655555 899999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEee
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+|+..+.+++.++..... +..+.++.. .+...+++| ..++|+|.++..
T Consensus 374 vW~~KtteC~~Tfk~~~~----d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 374 VWHGKTTECLSTFKPLGT----DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred EecCcchhhhhhccCCCC----cccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999999988765542 223333333 345556666 889999998753
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=8.3e-20 Score=182.70 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=159.0
Q ss_pred ceEE--EEe-cCCEEEEEeCCCeEEEEec--CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-E
Q 004914 56 AASC--VAV-AERMIALGTHAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-K 129 (724)
Q Consensus 56 ~i~~--~s~-~~~~la~g~~dg~I~i~d~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (724)
.|++ |.| .+.+|++|+.||.|+||+. .+..++++.+|+.+|.+++|+++|..++|+|.|+.+++||..+|++. .
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence 3555 666 7889999999999999999 57889999999999999999999999999999999999999999876 4
Q ss_pred EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEEcCCcEEEEE
Q 004914 130 FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYD 206 (724)
Q Consensus 130 ~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~~d~~i~i~d 206 (724)
+.....++|+.|+|+ +.+.|++|+.|+.|+.|+.+ .+...+.+..|-+.|..+.|- | ++|.++.|++++||+
T Consensus 296 f~~~~~~~cvkf~pd----~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 296 FHLDKVPTCVKFHPD----NQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred EecCCCceeeecCCC----CCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 666669999999999 35899999999999999987 566667777788999999998 4 555566799999999
Q ss_pred cCCCceEEEecCCCCC----------------------------------------C--CCCCCCCceee-cCCCeEEEE
Q 004914 207 AANDQRITFIERPRGS----------------------------------------P--RPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~----------------------------------------~--~~~~~~~~l~~-~~~~~l~~g 243 (724)
.+....+..+..+... . ....+.+.+.| +++.+|++|
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 8876444332221100 0 01233455666 588999999
Q ss_pred -eCCeEEEEEEeeCC
Q 004914 244 -WGTYIKIASIKTNQ 257 (724)
Q Consensus 244 -~d~~i~vw~~~~~~ 257 (724)
.+|.+.+||.++..
T Consensus 451 dsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTK 465 (503)
T ss_pred cCCccEEEeechhhh
Confidence 89999999988754
No 34
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=2.7e-18 Score=186.02 Aligned_cols=192 Identities=13% Similarity=0.153 Sum_probs=143.8
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecCC--------CeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEec
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFLG--------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSL 122 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~--------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~ 122 (724)
+.|.+ |+| ++++|++|+.||+|++||+.. ..+..+.+|...|.+++|+|++ ++|+||+.||+|+|||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 34544 677 678999999999999999842 2356788999999999999986 68999999999999999
Q ss_pred cCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC-eEEEEEe--C-CEEEE
Q 004914 123 FTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP-VHVVKWR--T-SLIAW 196 (724)
Q Consensus 123 ~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~-V~~l~~~--~-~~la~ 196 (724)
.++.. ..+..|. .|.+++|+|+ +..+++|+.||.|++|+.+ .+.....+..|.+. +..+.|. + .++++
T Consensus 156 ~tg~~~~~l~~h~~~V~sla~spd-----G~lLatgs~Dg~IrIwD~r-sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 156 ERGKAVEVIKCHSDQITSLEWNLD-----GSLLCTTSKDKKLNIIDPR-DGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCCeEEEEEcCCCCceEEEEEECC-----CCEEEEecCCCEEEEEECC-CCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 98765 4567777 9999999999 8999999999999999986 45556666677654 3456777 2 34444
Q ss_pred E----cCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 197 A----NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 197 ~----~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
+ .|+.|++||+++.. ++....... ...+....| .++..+++| .|+.|++|++..+.
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4 26899999998643 333322211 111223345 466677665 48999999998765
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.82 E-value=6.1e-20 Score=175.80 Aligned_cols=189 Identities=20% Similarity=0.231 Sum_probs=157.9
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCC-eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
..+.|+..+...+++|..|.+|+|||.+.. ....+.+|+++|.|+.++ .+.++|||.|.+|+|||..+++.. ++-.
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 558899999999999999999999999654 457889999999999886 569999999999999999998875 4566
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~ 208 (724)
|. .|..+.|+.. ++++++.|.++.+|+..-.. ....++.+|...|..+.|+.++|+++ +|.+|++|++.
T Consensus 276 HceaVLhlrf~ng-------~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 276 HCEAVLHLRFSNG-------YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hcceeEEEEEeCC-------EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence 66 9999999764 89999999999999875322 33456788999999999998888888 79999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+++.+.++..+... +.++.+ .++++++| .|++|++||+..+.-.
T Consensus 349 t~efvRtl~gHkRG------IAClQY-r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRG------IACLQY-RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ceeeehhhhccccc------ceehhc-cCeEEEecCCCceEEEEeccccHHH
Confidence 99999987776532 334443 57788888 9999999999887543
No 36
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=1.4e-17 Score=180.42 Aligned_cols=160 Identities=14% Similarity=0.275 Sum_probs=127.4
Q ss_pred EEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCC--------ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 88 EFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTD--------EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 88 ~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~--------~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ .+..+.+|. .|.+++|+|+ +++.+++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~----~~~iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS----AMNVLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC----CCCEEEEEe
Confidence 4788999999999999 8899999999999999999763 234677888 9999999998 247999999
Q ss_pred CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee
Q 004914 158 LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (724)
Q Consensus 158 ~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (724)
.||.|++|+.. .+.....+..|.+.|.+++|+ |.+++++ .|+.|++||+++++.+..+..+.+. ....+.|
T Consensus 146 ~DgtVrIWDl~-tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-----~~~~~~w 219 (493)
T PTZ00421 146 ADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-----KSQRCLW 219 (493)
T ss_pred CCCEEEEEECC-CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-----cceEEEE
Confidence 99999999986 455666777899999999999 6777777 6999999999999888776554321 1234556
Q ss_pred -cCCCeEE-EEe----CCeEEEEEEeeCC
Q 004914 235 -QDDTLLV-IGW----GTYIKIASIKTNQ 257 (724)
Q Consensus 235 -~~~~~l~-~g~----d~~i~vw~~~~~~ 257 (724)
.++..++ +|. ++.|++||++...
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 4444444 442 6789999997643
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=3.9e-18 Score=165.81 Aligned_cols=258 Identities=19% Similarity=0.230 Sum_probs=188.9
Q ss_pred CccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCC---CEEEEEeCCCCEEEEeccC
Q 004914 48 LPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDG---EYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 48 ~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g---~~l~s~~~Dg~v~iwd~~~ 124 (724)
...++..+.|+++...++.|.+|+.||.+++||..|+.+..+.+|+++|.+++|.... ..++++|.|.++++|-.+.
T Consensus 99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cccccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3445555778887777999999999999999999999999999999999988885433 3599999999999998877
Q ss_pred CceE-----EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc------------------------CCccc
Q 004914 125 DEKM-----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW------------------------LGYRD 174 (724)
Q Consensus 125 ~~~~-----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~------------------------~~~~~ 174 (724)
+... ...+|. +|-+|+..++ |..|++|+.|.++.+|+..- .+.+.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~s-----gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSS-----GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCC-----CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 5432 235888 9999999999 89999999999999997110 01334
Q ss_pred eEeccCCCCeEEEEEeC-CEEE-EEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEE
Q 004914 175 QVLHSGEGPVHVVKWRT-SLIA-WANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKI 250 (724)
Q Consensus 175 ~~l~~~~~~V~~l~~~~-~~la-~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~v 250 (724)
.++.+|.++|.++.|+. ..+. ++.|.+|+.||+.+++.+..+..+. ...++.. +...+|++| .|..+++
T Consensus 254 vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc-------ceeEeecccccceeeecCCCCceee
Confidence 56778999999999993 4444 4479999999999999888765543 2334555 466788888 8899999
Q ss_pred EEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecC-CceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEE
Q 004914 251 ASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRI 329 (724)
Q Consensus 251 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 329 (724)
||.+++... +-......-.-+|+++.|.. +.+.++... ....+++
T Consensus 327 ~DPR~~~gs-------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---------------------~D~t~kl 372 (423)
T KOG0313|consen 327 WDPRTGDGS-------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---------------------YDNTVKL 372 (423)
T ss_pred cCCCCCCCc-------------eeEEeeecchhhhhheecCCCCceEEEEEe---------------------cCCeEEE
Confidence 999986422 11112222234788888877 555555443 1356777
Q ss_pred eccCCc--ccccCcccCCccccccccCcccccc
Q 004914 330 VTWNND--ELTTDALPVLGFEHYKAKDYSLAHA 360 (724)
Q Consensus 330 v~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (724)
-|.+.. .+ |...+.+|..|+..
T Consensus 373 WDvRS~k~pl---------ydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 373 WDVRSTKAPL---------YDIAGHNDKVLSVD 396 (423)
T ss_pred EEeccCCCcc---------eeeccCCceEEEEe
Confidence 776642 22 55555566666653
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.6e-18 Score=157.36 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=154.7
Q ss_pred eEEEEec-CCEEEEEeCCCeEEEEecCC-Cee--E-EE-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---e
Q 004914 57 ASCVAVA-ERMIALGTHAGTVHILDFLG-NQV--K-EF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---K 127 (724)
Q Consensus 57 i~~~s~~-~~~la~g~~dg~I~i~d~~~-~~~--~-~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~ 127 (724)
.++|+|. |..||+|+.|..|++|+..+ ... + .+ .+|+..|.+++|+|.|++|++||.|+++.||.-..+. +
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 4578887 78999999999999999963 321 2 22 4699999999999999999999999999999876644 3
Q ss_pred EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEeC--CEEEEE-cCCc
Q 004914 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAG 201 (724)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~~--~~la~~-~d~~ 201 (724)
.++.+|. .|.|++|+++ |++||+++.|..|-+|...-.. ....++..|..-|..+.|+| .+++++ .|++
T Consensus 99 ~~lEGHEnEVK~Vaws~s-----G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSAS-----GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred eeeeccccceeEEEEcCC-----CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence 5688999 9999999999 9999999999999999876222 45678889999999999997 777777 6999
Q ss_pred EEEEEcCC---CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 202 VKVYDAAN---DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 202 i~i~d~~~---~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|++|.-.. -.+..++..+. ..+.++.| +.|..|+++ .|++++||...+.
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~------~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHE------NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred EEEEeecCCCCeeEEEEecCcc------ceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 99998772 24566655544 35778888 568899988 8899999997753
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=156.90 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=161.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (724)
.++.+|++.++++.|.+|++|+. .|..++++.+|...|.+++.+.|...+++|+.|..|.+||+.+|++. ++.+|. .
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq 103 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ 103 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce
Confidence 57889999999999999999999 78889999999999999999999999999999999999999998875 689998 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceE
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRI 213 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~ 213 (724)
|+.|+|+.+ +..+++|+.|..+++|+.+-.. .+.+++......|.++...+..|+++ .||++|.||++.|...
T Consensus 104 VNtV~fNee-----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 104 VNTVRFNEE-----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred eeEEEecCc-----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 999999998 7999999999999999987333 55677777888999999997655555 7999999999998776
Q ss_pred EEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 214 TFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
.-.- ...+.++++ .+++..++| -|+++++.|-.+++..
T Consensus 179 sDy~--------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 179 SDYF--------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred hhhc--------CCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 5322 224778888 566666666 9999999999887654
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=1.6e-18 Score=163.76 Aligned_cols=204 Identities=16% Similarity=0.208 Sum_probs=157.1
Q ss_pred cCCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCe--eEEEcCCccceeEEEEcCCCCEEEEEe
Q 004914 35 EEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQ--VKEFPAHTAAVNDLSFDVDGEYVGSCS 112 (724)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~ 112 (724)
.-|.+....+++.+..+ .|+|+|.++|+|+.|..|.+|+..|.. ...+++|+++|..+.|.++++.|+|+|
T Consensus 37 ~ap~m~l~gh~geI~~~-------~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTI-------KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred cchhhhcCCCcceEEEE-------EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec
Confidence 34444445555544333 599999999999999999999986554 567789999999999999999999999
Q ss_pred CCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 113 DDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
.|.+|+.||..+|+.. +++.|. -|+++. |. +.+..++.+|+.||++++|+.+ .....++ ...+-+++++.|.
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~--rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t-~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS--RRGPQLVCSGSDDGTLKLWDIR-KKEAIKT-FENKYQLTAVGFK 183 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecC--cc--ccCCeEEEecCCCceEEEEeec-ccchhhc-cccceeEEEEEec
Confidence 9999999999998764 578888 777776 33 2245678889999999999886 2222222 2345679999999
Q ss_pred ---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 191 ---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 ---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+.+.++-|+.|++||++.+....++..+.. .+..+.- +.+..+.+- .|.++++||++.-.
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D------tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD------TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ccccceeeccccCceeeeccccCcceEEeecccC------ceeeEEeccCCCccccccccceEEEEEecccC
Confidence 3566666899999999998888887665543 3556655 566666666 99999999998744
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.5e-18 Score=166.26 Aligned_cols=188 Identities=19% Similarity=0.256 Sum_probs=163.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (724)
++-|-|.+|++++.|.+|+.|+. +|-.+.++.+|..-|..+..+.||..+++|+.|.++++|-+.++.+. .+..|. +
T Consensus 200 ~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 200 FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred EEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 46788999999999999999999 78889999999999999999999999999999999999999998764 578888 9
Q ss_pred eeEEEeCCCCC----------CCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 136 MKAISLDPDYT----------RKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 136 v~~v~~~p~~~----------~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
|.|++|.|.-. .+++..+.+|+.|++|++|+.. .+....++.+|...|.+++|+ |++|+++ .|+++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcE
Confidence 99999988421 1234689999999999999986 688888999999999999999 8888877 79999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
++||+++++++.+++.+. .++.++.| .+..++++| -|.++++|..
T Consensus 359 rvwdl~~~~cmk~~~ah~------hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQCMKTLEAHE------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccceeeeccCCCc------ceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999876543 46888888 455677788 8888999964
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.80 E-value=3e-18 Score=170.84 Aligned_cols=192 Identities=20% Similarity=0.257 Sum_probs=158.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCe-----------------------------------------eEEEc
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQ-----------------------------------------VKEFP 90 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~-----------------------------------------~~~~~ 90 (724)
++|++ |+-.|++|++|+.||++.+||. +|.. +.++.
T Consensus 277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~ 356 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI 356 (524)
T ss_pred CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee
Confidence 55666 6667889999999999999986 3221 34677
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC-CeeEEEeCCCCC----CCCCCEEEEecCCCeEEE
Q 004914 91 AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYT----RKMSRRFVAGGLAGHLYL 164 (724)
Q Consensus 91 ~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~----~~~~~~l~~g~~dg~v~l 164 (724)
+|.+.|+++.|+|.|..|+|||.|++++||+... +....+..|. .|..+.|+|.-. ...+..+++++.|++|++
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 8999999999999999999999999999999766 4445678888 999999998521 223578999999999999
Q ss_pred EecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeE
Q 004914 165 NSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLL 240 (724)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l 240 (724)
|+.. .+.....+..|..||.+++|+ |.++|++ .|+.|.+|++++++..+...... .+..++| .+|..+
T Consensus 437 wdv~-~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-------~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 437 WDVE-SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-------GIFELCWNAAGDKL 508 (524)
T ss_pred EEcc-CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-------eEEEEEEcCCCCEE
Confidence 9986 678888888999999999999 8999999 59999999999999887654332 3678999 566777
Q ss_pred EEE-eCCeEEEEEEe
Q 004914 241 VIG-WGTYIKIASIK 254 (724)
Q Consensus 241 ~~g-~d~~i~vw~~~ 254 (724)
.++ .++.+.+.|++
T Consensus 509 ~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 509 GACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCceEEEec
Confidence 666 99999999986
No 43
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=2e-17 Score=179.96 Aligned_cols=189 Identities=15% Similarity=0.238 Sum_probs=139.7
Q ss_pred EEecCCEEEE------EeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCc-----
Q 004914 60 VAVAERMIAL------GTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE----- 126 (724)
Q Consensus 60 ~s~~~~~la~------g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~----- 126 (724)
++.+++++|. |+..|.|++|+. ....+..+.+|.++|.+++|+|+ +.+|+||+.||+|++||+.++.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 4555666554 556789999998 44557788999999999999997 7899999999999999997631
Q ss_pred ----eEEEeCCC-CeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-
Q 004914 127 ----KMKFDYHR-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA- 197 (724)
Q Consensus 127 ----~~~~~~~~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~- 197 (724)
...+.+|. .|.+++|+|+ +. .+++|+.||+|++|+.. .+.....+. +...|.+++|+ |.+++++
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~-----g~~iLaSgS~DgtIrIWDl~-tg~~~~~i~-~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPM-----NYYIMCSSGFDSFVNIWDIE-NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred cccceEEeecCCCcEEEEEECCC-----CCeEEEEEeCCCeEEEEECC-CCcEEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence 23467787 9999999998 44 56789999999999986 344333343 55789999998 7888877
Q ss_pred cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE-EeCC----eEEEEEEeeC
Q 004914 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI-GWGT----YIKIASIKTN 256 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g~d~----~i~vw~~~~~ 256 (724)
.|+.|++||+++++.+..+..+.+.... ..+....| .++..+++ |.++ .|++||++..
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 6999999999999988877665432110 01111123 35555555 5553 6999999863
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.80 E-value=4.8e-17 Score=164.43 Aligned_cols=191 Identities=20% Similarity=0.377 Sum_probs=138.9
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe---eEEEcCCccceeEEEEcCCCCEEEEEeCC----CCEEEEeccC--Cc-
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFT--DE- 126 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~--~~- 126 (724)
+..++|.|-++|+|...|+|+|||..+.. ..+++.-.++|.+|+|+.++++|+..++. |.+.+||.-+ |+
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei 143 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEI 143 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcccee
Confidence 33599999999999999999999996532 25677788999999999999998887764 4677887543 11
Q ss_pred -----------------------------------eE----EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 127 -----------------------------------KM----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 127 -----------------------------------~~----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
.. ++..|. -|+|+.|+|+ |..|++.+.||++.+|+
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-----G~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-----GSRFATAGSDGKIYIYD 218 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-----CCeEEEecCCccEEEEc
Confidence 11 123455 8999999999 89999999999999998
Q ss_pred cccCCccceEec---cCCCCeEEEEEeC---CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeE
Q 004914 167 KKWLGYRDQVLH---SGEGPVHVVKWRT---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLL 240 (724)
Q Consensus 167 ~~~~~~~~~~l~---~~~~~V~~l~~~~---~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l 240 (724)
.. ++.+...+. .|.|.|.+++|++ +++.++.|.+++|||+.+.+++.++..... .....+ .+.|.++.++
T Consensus 219 Gk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v~dqqv-G~lWqkd~lI 294 (603)
T KOG0318|consen 219 GK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST--VEDQQV-GCLWQKDHLI 294 (603)
T ss_pred CC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc--hhceEE-EEEEeCCeEE
Confidence 75 677777776 6999999999993 455555799999999999988887766543 111111 2334444444
Q ss_pred EEEeCCeEEEEEEeeC
Q 004914 241 VIGWGTYIKIASIKTN 256 (724)
Q Consensus 241 ~~g~d~~i~vw~~~~~ 256 (724)
.+.-+|.|.+++....
T Consensus 295 tVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDP 310 (603)
T ss_pred EEEcCcEEEEecccCC
Confidence 4445555555544433
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.80 E-value=1.1e-17 Score=168.93 Aligned_cols=187 Identities=21% Similarity=0.272 Sum_probs=148.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEc---CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--------
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFP---AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-------- 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~---~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-------- 126 (724)
.++|||+++|+.+.||+|.+||- +|..+..+. +|.+.|.+++|+||++.++|+|.|.+++|||+.++.
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 48999999999999999999998 788888887 899999999999999999999999999999986532
Q ss_pred ------------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe---
Q 004914 127 ------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS--- 166 (724)
Q Consensus 127 ------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~--- 166 (724)
...+.+|. .|++++.+|+ +.+|++|+.||.|.-|+
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-----~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-----GKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-----CCEEEeeccCceEEEEecCC
Confidence 11234677 8999999999 79999999999999994
Q ss_pred --------------------------------------------------------------------------------
Q 004914 167 -------------------------------------------------------------------------------- 166 (724)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (724)
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence
Q ss_pred -----------------------------ccc---------CC---ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 167 -----------------------------KKW---------LG---YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 167 -----------------------------~~~---------~~---~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
..- .+ ........|.++|++++++ +.++|++ -.+.+
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 000 00 0011222366888899998 6788888 57889
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
.+||+.+++.... .-..|...+.+++| +++.++++| -|.+|.||++..
T Consensus 512 v~yd~~s~~~~~~-----~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 512 VLYDVASREVKTN-----RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEEEcccCceecc-----eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999988776321 12235556889999 788899999 889999999976
No 46
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=1.1e-17 Score=182.13 Aligned_cols=191 Identities=10% Similarity=0.117 Sum_probs=139.8
Q ss_pred CceEE--EEec-CCEEEEEeCCCeEEEEecC-CC--------eeEEEcCCccceeEEEEcCCCCE-EEEEeCCCCEEEEe
Q 004914 55 DAASC--VAVA-ERMIALGTHAGTVHILDFL-GN--------QVKEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINS 121 (724)
Q Consensus 55 ~~i~~--~s~~-~~~la~g~~dg~I~i~d~~-~~--------~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd 121 (724)
+.|.+ |+|+ +++||+|+.||+|++||+. +. .+..+.+|...|++++|+|++.. ++|++.||+|++||
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 34544 6665 7899999999999999983 22 23467889999999999999876 57999999999999
Q ss_pred ccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEE-----Ee--CCE
Q 004914 122 LFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK-----WR--TSL 193 (724)
Q Consensus 122 ~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~-----~~--~~~ 193 (724)
+.++... .+..+..|.+++|+|+ |..+++++.|+.+++|+.+ .+.....+.+|.+.+.+.. |+ +.+
T Consensus 155 l~tg~~~~~i~~~~~V~Slswspd-----G~lLat~s~D~~IrIwD~R-sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 155 IENEKRAFQINMPKKLSSLKWNIK-----GNLLSGTCVGKHMHIIDPR-KQEIASSFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred CCCCcEEEEEecCCcEEEEEECCC-----CCEEEEEecCCEEEEEECC-CCcEEEEEecccCCceeEEEEeeeEcCCCCE
Confidence 9987643 4543348999999999 8999999999999999987 4566667778877654332 22 345
Q ss_pred EE-EEcC----CcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 194 IA-WAND----AGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 194 la-~~~d----~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++ ++.| +.|++||++. ++++..+...... ......| .++.++++| .|+.|++|++..+
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-----~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS-----APLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc-----cceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 55 4544 3699999994 5566554332211 0111123 357788888 8999999999754
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=9.8e-17 Score=163.86 Aligned_cols=187 Identities=19% Similarity=0.289 Sum_probs=154.8
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ceEEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~-~ 135 (724)
+++++++++++|+.+|.|++|+.. +.....+..|...+.++.|+|+++.+++++.||.|++|++.++ ....+..+. .
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 95 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY 95 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc
Confidence 577788999999999999999994 5556778889999999999999999999999999999999984 445677777 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc-CCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-d~~i~i~d~~~~~~ 212 (724)
+.++.|+|+ +..+++++.+|.+.+|+.. .+.....+..|.+.|.++.|+ +.+++++. ++.+++||+++++.
T Consensus 96 i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 96 VSSVAFSPD-----GRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred EEEEEEcCC-----CCEEEEecCCCeEEEEECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 999999998 6888888889999999885 445556666788899999999 47888886 99999999998887
Q ss_pred EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+..+. ..+.++.| +++..++++ .++.|++||++.+.
T Consensus 170 ~~~~~~~~------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 170 VATLTGHT------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ceeEecCc------cccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 77665332 24667888 556567777 79999999997643
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6.5e-19 Score=162.40 Aligned_cols=201 Identities=18% Similarity=0.251 Sum_probs=159.8
Q ss_pred CCCccceeccCCCccccCCCceEEEEe-cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC-CCEEEEEe
Q 004914 36 EPRLKYQRMGGSLPSLLANDAASCVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-GEYVGSCS 112 (724)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~s~-~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~ 112 (724)
.|+.+|+.|...+.++ .|++ .+..+++++.||+|++|+. .++.+.++.+|...|....|+|. ++.++++|
T Consensus 95 ~Pi~~~kEH~~EV~Sv-------dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSV-------DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred cchhHHHhhhhheEEe-------ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 4555555554444332 3444 4567888899999999999 46668999999999999999995 67999999
Q ss_pred CCCCEEEEeccC-CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 113 DDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 113 ~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
.||+.++||++. |+...+..|. .+.|+.|+.. +.+.+++|+.|+.|+.|+.+-.......+.+|.-.|..+.|+
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky----~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY----NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeeccccc----CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 999999999987 7777788898 9999999875 468999999999999999886677788888999999999999
Q ss_pred C---CEEEEE-cCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceeec--CCCeEEEE-eCCeEEEEEE
Q 004914 191 T---SLIAWA-NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 191 ~---~~la~~-~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~ 253 (724)
+ .+++++ -|-++||||...+. .+.+.. .|..+++.+.|+ ++..++.+ ||+.++||+.
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVD------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhh------ccceEEeccccccccCceeeecccccceeeecc
Confidence 4 678877 59999999987443 333433 344578888883 55556655 9999999973
No 49
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.79 E-value=2.7e-19 Score=162.45 Aligned_cols=113 Identities=31% Similarity=0.441 Sum_probs=104.7
Q ss_pred hcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhhHHHhh-hcCCCCHHHHHH
Q 004914 607 QNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLR-SSQHYTLEKAYE 685 (724)
Q Consensus 607 ~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~ll~fL~-~~~~y~~~~al~ 685 (724)
+..+.++|+.||++|+.. +.+..++.||++++..++ ..+++||+|+++|+++++.++++||+ ++.+||+++|++
T Consensus 3 ~~~~~~~~~~vv~~~~~~----~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~ 77 (140)
T smart00299 3 EVSDPIDVSEVVELFEKR----NLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGK 77 (140)
T ss_pred cCCCcCCHHHHHHHHHhC----CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHH
Confidence 445678999999999854 458899999999999875 78899999999999999999999999 889999999999
Q ss_pred HHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCccccC
Q 004914 686 ICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEVF 724 (724)
Q Consensus 686 ~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~Ai 724 (724)
+|++++++++++|||+|+|++++|+.++|++++|++.||
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~ 116 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAI 116 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHH
Confidence 999999999999999999999999999999999999885
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.7e-17 Score=153.28 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=124.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC---CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc----eEEEe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL---GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE----KMKFD 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~----~~~~~ 131 (724)
+|+|+|++||+|+.|+++.||.-. ...+..+.+|...|.|++|+++|++||+|+.|..|-||.+..+. ...++
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 699999999999999999999873 24478889999999999999999999999999999999998633 23578
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVY 205 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~ 205 (724)
.|. -|..+.|||. ..+|++++.|.+|++|...-.. ....++.+|.+.|.+++|+ |..++++ .|++++||
T Consensus 148 ~HtqDVK~V~WHPt-----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPT-----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCC-----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 888 9999999998 6899999999999999654111 4577888999999999999 6555555 79999999
Q ss_pred EcC
Q 004914 206 DAA 208 (724)
Q Consensus 206 d~~ 208 (724)
-..
T Consensus 223 ~~~ 225 (312)
T KOG0645|consen 223 RLY 225 (312)
T ss_pred eec
Confidence 844
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-18 Score=160.38 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=153.4
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEec--CCCeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccC-CceEEEeCC
Q 004914 59 CVAV-AERMIALGTHAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT-DEKMKFDYH 133 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~--~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~ 133 (724)
+|++ +.+.+++++.||++++||. ...++..++.|...|.++.|++.. ..++++|.||+|++|+... +.+.++.+|
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 5666 4678999999999999998 355688899999999999999864 4678889999999999887 556789999
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~ 208 (724)
. .|...+|+|. .++.|++++.||.+++|+.+..|+... +..|...|.++.|+ ..+++++ .|+.|+.||++
T Consensus 147 ~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 147 NSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred ccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 9 9999999998 479999999999999999886654444 78888999999999 5788888 79999999998
Q ss_pred CC-ceEEEecCCCCCCCCCCCCCceeec--CCCeEEEE-eCCeEEEEEEeeCC
Q 004914 209 ND-QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 209 ~~-~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.- .++..+. +|...+..+.|+ ...+|+++ .|-+++|||.....
T Consensus 222 ~~r~pl~eL~------gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 222 NLRTPLFELN------GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred hccccceeec------CCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 54 3444433 344456677773 45678888 88899999987544
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.8e-18 Score=181.73 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=150.9
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC------------------------------------C------------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG------------------------------------N------------ 84 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~------------------------------------~------------ 84 (724)
++|.| |+++|++||+|+.||.|+||.+.. .
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 55655 889999999999999999997632 0
Q ss_pred -------------eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCC
Q 004914 85 -------------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 85 -------------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
++..+.+|.+.|.+++|+.+ .+|+|+|.|.+|++|++....++..-.|. -|+||+|+|. +.
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv----DD 422 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV----DD 422 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc----CC
Confidence 02356889999999999975 57999999999999999998888776777 9999999997 57
Q ss_pred CEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEe--cCCCCCCCC
Q 004914 151 RRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFI--ERPRGSPRP 225 (724)
Q Consensus 151 ~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i--~~~~~~~~~ 225 (724)
++|++|+.||.++||... ..++.....-..-|++++|. |+..+.| -+|.+++|+....+..... ..+......
T Consensus 423 ryFiSGSLD~KvRiWsI~--d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSIS--DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecC--cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 999999999999999763 33333334445789999999 7777666 6999999999877665532 222221111
Q ss_pred CCCCCceeec---CCCeEEEEeCCeEEEEEEeeCCCC
Q 004914 226 ELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTNQSN 259 (724)
Q Consensus 226 ~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~~~~ 259 (724)
...++.+.+. ...+|++..|..|||+|.++....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 1246666662 234677779999999999765543
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=4.3e-17 Score=190.92 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=148.7
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 59 CVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
+|++ +++.|++|+.||+|++||. +++.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++... .+..+.
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~ 618 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA 618 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC
Confidence 3444 4679999999999999999 4666788899999999999997 7889999999999999999986654 455555
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEE-cCCcEEEEEcCCC--
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAAND-- 210 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~-~d~~i~i~d~~~~-- 210 (724)
.|.++.|++. ++..+++|+.||.|++|+.+-.......+.+|.+.|+++.|. +..++++ .|++|++||++.+
T Consensus 619 ~v~~v~~~~~----~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 619 NICCVQFPSE----SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CeEEEEEeCC----CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence 8999999654 378999999999999999863223456677899999999998 5666555 7999999999743
Q ss_pred ----ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 211 ----QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 211 ----~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
..+..+.. |...+..+.| .++..+++| .|+.|++|+....
T Consensus 695 ~~~~~~l~~~~g------h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 695 GINETPLHSFMG------HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccCCcceEEEcC------CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 33444333 3334566778 567888888 8999999997643
No 54
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=165.78 Aligned_cols=224 Identities=18% Similarity=0.243 Sum_probs=175.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR 134 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~ 134 (724)
.++++++|++||+|+.|..|.||+. +...++.+.+|.+.|.+++|-..-..+.+++.|++|++|++.... +-++-+|.
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 3458889999999999999999999 667788899999999999999888889999999999999998743 44677777
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCc
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~ 211 (724)
.|.++..... .+.+.+|+.|+++++|... .....++.++.+.+-|++|- ..++.++.+|.|.+|++.+++
T Consensus 287 d~v~~IdaL~r-----eR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 287 DGVLGIDALSR-----ERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred cceeeechhcc-----cceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 9999887766 6788888899999999873 45555677888899999998 456666689999999999999
Q ss_pred eEEEecCCCCCC------CCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeece
Q 004914 212 RITFIERPRGSP------RPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSY 283 (724)
Q Consensus 212 ~~~~i~~~~~~~------~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (724)
++.+...+++.. ....|+.+++- +...++++| |+|+|++|.+..+.. .+++...+...-
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------~i~~l~~ls~~G 426 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------AINLLYSLSLVG 426 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------ccceeeeccccc
Confidence 988766554321 11236666666 677888999 999999999987532 223444445566
Q ss_pred EEEeeeecC-CceEEEEe
Q 004914 284 YISGIAPFG-DCLVVLAY 300 (724)
Q Consensus 284 ~i~gi~~~~-~~l~~l~~ 300 (724)
.|.++++.. +..++.+.
T Consensus 427 fVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 427 FVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEEEccCCCEEEEec
Confidence 778888666 55555553
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.77 E-value=9.7e-18 Score=163.10 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=151.4
Q ss_pred CceEEEE--ecCCEEEEEeCCCeEEEEecC--------------------------CCeeEEEcCCccceeEEEEcCCCC
Q 004914 55 DAASCVA--VAERMIALGTHAGTVHILDFL--------------------------GNQVKEFPAHTAAVNDLSFDVDGE 106 (724)
Q Consensus 55 ~~i~~~s--~~~~~la~g~~dg~I~i~d~~--------------------------~~~~~~~~~h~~~V~~l~~s~~g~ 106 (724)
.+|-|++ ++|..+++|+.|.++.||+.. +.++..+.+|+.+|.++.|++ ..
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence 3455554 578899999999999999921 011456789999999999998 66
Q ss_pred EEEEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc--ceEeccCCCC
Q 004914 107 YVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR--DQVLHSGEGP 183 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~--~~~l~~~~~~ 183 (724)
.+.|+|.|.+|+.||+.++... ++....+++|+..+|. .+++++|+.|..+++|+.+-.+.. ...+.+|.+.
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~-----~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL-----SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcceeEeecccc-----cceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 7999999999999999996654 5666669999999998 799999999999999998743322 4556789999
Q ss_pred eEEEEEeC----CEEEEEcCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEE
Q 004914 184 VHVVKWRT----SLIAWANDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 184 V~~l~~~~----~~la~~~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~ 253 (724)
|.++.|++ .++.++.|+++++||+++.+ ++..+.++. .-+.++.|.++..+++| .|+.|+++.-
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~------DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN------DKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC------ceEEEEeccCCceEEeccCcceEEEecc
Confidence 99999993 34444479999999999766 777776664 34778999999889988 9999998853
No 56
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=6.4e-18 Score=177.23 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=149.2
Q ss_pred CCEEEEEeCCCeEEEEecCCC-e-----eE----EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeC
Q 004914 64 ERMIALGTHAGTVHILDFLGN-Q-----VK----EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDY 132 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~-~-----~~----~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~ 132 (724)
..++++++.|+++++|++... . +. +..+|...|+|++++|+.+.|+|||.|.+.+||++....+ .++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 459999999999999999441 1 11 2357999999999999999999999999999999997554 47899
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEEcCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWANDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~~d~~i~i~d~~ 208 (724)
|+ .|+||.|+|. .+.++++|.|++|++|... +....+++.+|...|..+.|- |. +|.++.||-+++|++.
T Consensus 504 H~RGvw~V~Fs~~-----dq~laT~SgD~TvKIW~is-~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 504 HTRGVWCVSFSKN-----DQLLATCSGDKTVKIWSIS-TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CccceEEEEeccc-----cceeEeccCCceEEEEEec-cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99 9999999998 7999999999999999986 678889999999999999997 54 5555589999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
++.+..++..|... +..++- +....+++| .|+.|.+|.
T Consensus 578 t~eC~~tlD~H~Dr------vWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 578 TNECEMTLDAHNDR------VWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred chhhhhhhhhccce------eEEEeecCccceeEecCCCeEEEEee
Confidence 99999988777643 444544 455677777 899999995
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-16 Score=169.62 Aligned_cols=192 Identities=13% Similarity=0.165 Sum_probs=150.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (724)
+|.|.+.++++|+.|-+|++|+.. .+.+-++.+|-+-|..+.|++.-.+|+|+|+|.+|+||+..++.+. .+.+|. .
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY 137 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY 137 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE
Confidence 688888999999999999999994 5557888999999999999999999999999999999999997765 689999 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc------------------------CCcc----ceEeccCCCCeEEE
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW------------------------LGYR----DQVLHSGEGPVHVV 187 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~------------------------~~~~----~~~l~~~~~~V~~l 187 (724)
|.|..|+|. ...++++|.|.+|++|+..- .|.. ..++.+|+..|..+
T Consensus 138 VMcAqFhpt-----EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 138 VMCAQFHPT-----EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred EEeeccCCc-----cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999997 69999999999999997320 0111 12445688889999
Q ss_pred EEeC--CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecC-CCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 188 KWRT--SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 188 ~~~~--~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+|+| .+|++| .|+.|++|.+...+.-.. . ...+|...+.++.|+. ..++++. .|++|+|||+..+.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEv---D-tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEV---D-TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceee---h-hhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 9996 566666 789999999874432211 1 1233445577777844 3444444 9999999999887643
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.76 E-value=5.4e-17 Score=153.41 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=153.5
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
++|.. +..+++.|++++.|.+++.||. +|+.++.+++|.+-|+++.-+.-|. ++.||+.||++++||++++.....
T Consensus 91 gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 91 GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 44544 6779999999999999999999 7888999999999999888555554 577889999999999998776554
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
...+ +++++.|... +..+.+|+-|+.|++|+.+ .+...-++.+|..+|+++..+ |.++.+- .|.++++||
T Consensus 171 ~~~kyqltAv~f~d~-----s~qv~sggIdn~ikvWd~r-~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 171 FENKYQLTAVGFKDT-----SDQVISGGIDNDIKVWDLR-KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWD 244 (338)
T ss_pred cccceeEEEEEeccc-----ccceeeccccCceeeeccc-cCcceEEeecccCceeeEEeccCCCccccccccceEEEEE
Confidence 4445 9999999988 8999999999999999987 456677889999999999998 6665554 799999999
Q ss_pred cCC----CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AAN----DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~----~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++- ..++..+..+..... .-.-..+| +++..+..| .|..+++||...+.
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfe--knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFE--KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred ecccCCCCceEEEeecchhhhh--hhcceeeccCCCCccccccccceEEEeeccccc
Confidence 983 334555544422111 12334568 677777777 88899999987654
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-16 Score=145.28 Aligned_cols=225 Identities=14% Similarity=0.178 Sum_probs=173.1
Q ss_pred ceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEE
Q 004914 41 YQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI 119 (724)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (724)
...|..++..+ .++.+|.+|.+++.|.++.+|-. +|..+.++.+|+++|+|+..+.+.++++||+.|.++++
T Consensus 6 l~GHERplTqi-------KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 6 LQGHERPLTQI-------KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred cccCccccceE-------EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 34455555555 57778999999999999999977 99999999999999999999999999999999999999
Q ss_pred EeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecC-----CCeEEEEecccCC------ccceEeccCCCCeEEE
Q 004914 120 NSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGL-----AGHLYLNSKKWLG------YRDQVLHSGEGPVHVV 187 (724)
Q Consensus 120 wd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~-----dg~v~l~~~~~~~------~~~~~l~~~~~~V~~l 187 (724)
||+.+|+.. .++...+|..+.|+++ +++++.... .+.|.+++.+-.. .+...+..++..++.+
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~-----gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFG-----GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccC-----CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 999998775 5677779999999999 677666543 3567777665222 2345566678889999
Q ss_pred EEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCC
Q 004914 188 KWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVAN 262 (724)
Q Consensus 188 ~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~ 262 (724)
.|. +++|+++ .||.|.+||+++|.....- ...|...+..+.+ ++..++++| .|.+-++||+++
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-----~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t------- 221 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDS-----DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT------- 221 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeec-----hhhhccccccccccCCcceEEecccCccceeeeccc-------
Confidence 999 7888877 7999999999998655432 1223335677777 677888888 888999999876
Q ss_pred CccccCCCeEEEEEEEeeeceEEEeeeecC--CceEEEE
Q 004914 263 GTYRHVGMNQVDIVASFQTSYYISGIAPFG--DCLVVLA 299 (724)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~--~~l~~l~ 299 (724)
+++.+.+.+++.+-..+-.. +.+++-+
T Consensus 222 ----------l~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 222 ----------LEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred ----------eeeEEEeeecccccceecccccceEEecC
Confidence 35677777777665544444 5544443
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2e-17 Score=176.07 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=153.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+|.|...+|.++-.+|.|.+||. -+..+..|..|.++|.+++|+|++.+++|||+|-.|+||+..+.++ .++.+|- .
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY 95 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence 67778889999999999999999 5777899999999999999999999999999999999999998665 5788888 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--CEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|..+.||+.| .+++++|.|.+|++|+-. .++...++.+|...|.|.+|+| .+|+++ -|.+||+||+..-+.
T Consensus 96 VRt~~FHhey-----PWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 96 VRTVFFHHEY-----PWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred eEEeeccCCC-----ceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 9999999995 899999999999999754 4577889999999999999995 677776 599999999963211
Q ss_pred EEEecC--------CCC---------------CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 ITFIER--------PRG---------------SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~--------~~~---------------~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
...-+. ... ..+|+.-+.-.+| +.-.++++| .|..|++|..+..+
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 110000 000 0123333444455 345678888 66679999987643
No 61
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=8.3e-18 Score=177.19 Aligned_cols=214 Identities=19% Similarity=0.278 Sum_probs=163.3
Q ss_pred cCCEEEEEeCCCeEEEEecCC----CeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 63 AERMIALGTHAGTVHILDFLG----NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~----~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+.++||+++.+|.|.+||++. ..+..|..|+..|+++.|++.. .+|+|||.||.|++||++..+. .++.+.. .
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 577899999999999999943 2346788999999999999864 5789999999999999998654 3455556 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|..|+|+|.+ +..|+++...|.+.+|+.+........+..|.|+|.++.|+ +.+||+| .|+.|+|||+.+++.
T Consensus 179 iRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 179 IRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hhceeeccCC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 9999999995 79999999999999999986666667778899999999999 5799988 699999999986432
Q ss_pred --EEEecCCCCCCCCCCCCCceeec--CCCeEEEE---eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEE
Q 004914 213 --ITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG---WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYI 285 (724)
Q Consensus 213 --~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 285 (724)
+.++... ..+.++.|. ....|+++ .|-.|+|||++..-.+ ......-+-.+
T Consensus 255 ~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---------------~~t~~eH~~~v 312 (839)
T KOG0269|consen 255 KPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---------------YATFLEHTDSV 312 (839)
T ss_pred cceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc---------------ceeeeccCccc
Confidence 2233222 246788893 34567766 5667999999863321 11112224566
Q ss_pred EeeeecC-CceEEEEeec
Q 004914 286 SGIAPFG-DCLVVLAYIP 302 (724)
Q Consensus 286 ~gi~~~~-~~l~~l~~~~ 302 (724)
+|++|-. |...++....
T Consensus 313 t~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSK 330 (839)
T ss_pred cceeccCCCceeeEeecC
Confidence 7777776 5555565543
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=157.10 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=159.9
Q ss_pred ccceeccCCCccccCCCceEE----EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeC
Q 004914 39 LKYQRMGGSLPSLLANDAASC----VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (724)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~i~~----~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (724)
+-+.+-.+.+-.++.++...+ ++++...+++++.|-.|++|.. ..........|.++|+.+..+|.|.||++++.
T Consensus 244 v~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 244 VLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred EEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC
Confidence 333444444455556654333 4456668889999999999998 34445667889999999999999999999999
Q ss_pred CCCEEEEeccCCceEEEeCC---C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEE
Q 004914 114 DGSVVINSLFTDEKMKFDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKW 189 (724)
Q Consensus 114 Dg~v~iwd~~~~~~~~~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~ 189 (724)
||+....|++++.......+ . .+++.+|||+ |..|.+|..||.+++|+.. .+.....+.+|.++|.+++|
T Consensus 324 d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD-----gLifgtgt~d~~vkiwdlk-s~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 324 DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD-----GLIFGTGTPDGVVKIWDLK-SQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred CceEEEEEccCCcEEEEEeeccccceeEEeeEcCC-----ceEEeccCCCceEEEEEcC-CccccccCCCCCCceeEEEe
Confidence 99999999999877654322 2 7999999999 8999999999999999986 45567778899999999999
Q ss_pred e--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 190 R--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 190 ~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+ |.+++++ .|+.|++||++.-+...++..+... .+.+++| ..|.+|+++ +..++|+-...
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-----~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k 461 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-----EVNSLSFDQSGTYLGIA-GSDLQVYICKK 461 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccc-----cceeEEEcCCCCeEEee-cceeEEEEEec
Confidence 9 8899988 6777999999987777766655432 2567888 567777777 56666666654
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2e-17 Score=150.87 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=146.1
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---eEEEeCCC-
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---KMKFDYHR- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~~~~~~~~- 134 (724)
.+.+...+++|+.|..+.+||. +|+.++.+++|.+.|+.+.|+.+...++||+.|.++++||.++.. +..+....
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 5667889999999999999999 788889999999999999999999999999999999999999843 34455555
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCE-EEEEcCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSL-IAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~-la~~~d~~i~i~d~~~~~ 211 (724)
.|.+|.+.. ..+++|+.||+++.|+.+ .|....-. ...||++++|+ ++. ++++-|+++++.|-.+|+
T Consensus 147 ~V~Si~v~~-------heIvaGS~DGtvRtydiR-~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 147 GVSSIDVAE-------HEIVAGSVDGTVRTYDIR-KGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred ceeEEEecc-------cEEEeeccCCcEEEEEee-cceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhH
Confidence 899988864 589999999999999887 44433222 35689999999 554 555579999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+.....+.+.. +....++ .....+++| .||.|++||+-...
T Consensus 217 lL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 217 LLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred HHHHhcccccce----eeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 988776665321 2223333 345566677 99999999997654
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=3.5e-17 Score=175.15 Aligned_cols=204 Identities=17% Similarity=0.229 Sum_probs=152.8
Q ss_pred cCCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecCC-CeeEEEcCCccceeEEEEcC-CCCEEEEEe
Q 004914 35 EEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDV-DGEYVGSCS 112 (724)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~ 112 (724)
++|+..|..|++++-.+ +|+- .++|.+++.|.+|++|++.. .+++.| .|..-|+|++|+| |.++++||+
T Consensus 359 ekP~~ef~GHt~DILDl-------SWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDL-------SWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ccchhhhhccchhheec-------cccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecc
Confidence 45555555665555444 4544 45888999999999999954 445555 6999999999999 567999999
Q ss_pred CCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEecc------CCCCe
Q 004914 113 DDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHS------GEGPV 184 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~------~~~~V 184 (724)
-||.|+||++...++..+..-+ -|++++|.|+ |+..++|+.+|.+++|+..-.. .....+.. ....|
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~Pd-----Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPD-----GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccC-----CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence 9999999999998887765545 9999999999 9999999999999999754111 00111111 12379
Q ss_pred EEEEEe-C---CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 185 HVVKWR-T---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 185 ~~l~~~-~---~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+++.|. + .++++++|..|||||.+...++..+....+.. ......| .+|+.+++| .|..|++|+....
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~----SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS----SQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC----cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 999998 2 48888899999999998888777666543221 1223445 689999999 7788999998543
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.74 E-value=1.4e-17 Score=157.64 Aligned_cols=192 Identities=20% Similarity=0.299 Sum_probs=152.5
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC-------------C------CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL-------------G------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~-------------~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (724)
-.|++||.++|+|+.|.+|+|+|.. | ..++++-.|...|+++.|+|....|+||+.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 3599999999999999999999964 1 12577888999999999999999999999999999
Q ss_pred EEeccCCce---E-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc--ceEeccCCCCeEEEEEe--
Q 004914 119 INSLFTDEK---M-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR--DQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 119 iwd~~~~~~---~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~--~~~l~~~~~~V~~l~~~-- 190 (724)
++|+..... . .+..-.+|.++.|+|. |.++++|..-.++++|+......- ...-..|.+.|+++.++
T Consensus 198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPs-----GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPS-----GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST 272 (430)
T ss_pred EEecccHHHHHHHHHhhccceeeeEeecCC-----CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC
Confidence 999986332 2 2333339999999999 899999999999999987521100 11113478899999999
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
|++.+++ .||.|++||-.+++++.++....+. ..+|+..| .++++++++ .|..+++|.+.++..
T Consensus 273 ~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g----sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG----SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ccEEEEeccCCcEEeeccccHHHHHHHHhhcCC----ceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 6777777 6999999999999999887655432 34788888 677776665 899999999988654
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=2.5e-17 Score=161.60 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=142.8
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec--CCC--eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE--e
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF--LGN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF--D 131 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~--~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~--~ 131 (724)
..||++|+++|+++.|.+..+|.. .+. ..+++.+|..+|.-+.||||.+++++|+.|..+++||..+|..... .
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 358999999999999999999988 222 2578889999999999999999999999999999999999887654 2
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec------ccCCccce------------------------E----
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK------KWLGYRDQ------------------------V---- 176 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~------~~~~~~~~------------------------~---- 176 (724)
++. .+.+++|.|+ |..|++|+.|+++..|+. .|.+.... .
T Consensus 310 ~~~~S~~sc~W~pD-----g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPD-----GFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred CcCCCcceeEEccC-----CceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 234 8999999999 899999999999999952 12210000 0
Q ss_pred ------eccCCCCeEEE--------------------------------------------EEeC---CEEEEE-cCCcE
Q 004914 177 ------LHSGEGPVHVV--------------------------------------------KWRT---SLIAWA-NDAGV 202 (724)
Q Consensus 177 ------l~~~~~~V~~l--------------------------------------------~~~~---~~la~~-~d~~i 202 (724)
+-....+|++. +|.| .+|++| .|+.|
T Consensus 385 ~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 385 ARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred hhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 00011223322 2221 577777 58999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEee
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+||+..+|+++..+..+. ..+.+++| .+..++++| .||+||||....
T Consensus 465 yIWhr~sgkll~~LsGHs------~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 465 YIWHRISGKLLAVLSGHS------KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEEccCCceeEeecCCc------ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999998865554 45888999 366788888 899999997653
No 67
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-16 Score=146.31 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=145.5
Q ss_pred EEecCCEEEEEeCCCeEEEEec--CC--CeeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCce---EEE
Q 004914 60 VAVAERMIALGTHAGTVHILDF--LG--NQVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEK---MKF 130 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~--~~--~~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~---~~~ 130 (724)
+...|+.||++++|++|+||.. ++ ..+.++.+|+++|+.++|.. -|.+|+||+.||.|.||.-.++.- ...
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 4567999999999999999998 33 34678999999999999976 799999999999999999888643 345
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEeC----------------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRT---------------- 191 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~~---------------- 191 (724)
..|. .|++|+|.|.- -|-.|++++.||.|.+.+.+-.+ ...++...|.-.|++++|.+
T Consensus 99 ~~h~~SVNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhcccceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 6777 99999999972 26789999999999998765442 23455667888899999982
Q ss_pred C-EEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-c----CCCeEEEE-eCCeEEEEEEee
Q 004914 192 S-LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-Q----DDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 192 ~-~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~----~~~~l~~g-~d~~i~vw~~~~ 255 (724)
. ++.++.|..|+||+..++.-+ .......|..++..++| + ....+++| .|+++.||..+.
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~----~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWK----LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ceeeccCCccceeeeecCCcchh----hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 2 444558999999999876322 11113445556777777 2 23567777 999999998773
No 68
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=3.4e-16 Score=149.01 Aligned_cols=189 Identities=20% Similarity=0.283 Sum_probs=152.4
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCC--EEEEEeCCCCEEEEeccCCc-eEEE
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGE--YVGSCSDDGSVVINSLFTDE-KMKF 130 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~--~l~s~~~Dg~v~iwd~~~~~-~~~~ 130 (724)
.+++|++.++.++|+|+.|-+|+|||+. ...+..+-.|.+.|+++.|.+.-. +|++|++||.|.+|+...-. +..+
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl 123 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL 123 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee
Confidence 4578999999999999999999999994 444677788999999999998776 89999999999999998844 4568
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEc
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDA 207 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~ 207 (724)
+.|. .|+.++.+|. +++.++.+.|+.+++|+.- .|+...++.-. ..-+.+.|. |..++.+....|-+|.+
T Consensus 124 K~H~~~Vt~lsiHPS-----~KLALsVg~D~~lr~WNLV-~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~ 196 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPS-----GKLALSVGGDQVLRTWNLV-RGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQL 196 (362)
T ss_pred cccccccceeEecCC-----CceEEEEcCCceeeeehhh-cCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEec
Confidence 8888 9999999999 8999999999999999874 45444443322 223448898 77777777778999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+......+..+. .+.++.|.++..|++| .++.|++||.....
T Consensus 197 d~A~v~~~i~~~~-------r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 197 DNASVFREIENPK-------RILCATFLDGSELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred ccHhHhhhhhccc-------cceeeeecCCceEEEecCCceEEEeccCCCc
Confidence 9887776665552 2456778778888888 88889999987643
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-16 Score=165.32 Aligned_cols=187 Identities=18% Similarity=0.315 Sum_probs=155.6
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-E-
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-M- 128 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~- 128 (724)
+.+++ |+++|++||+|+.+|.|.|||. +.+.+..+.+ |...|.+++|+ +..+.+|+.||.|..+|++..+. .
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 44655 6778999999999999999999 5556778888 99999999998 67899999999999999998443 2
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE---cCCc
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA---NDAG 201 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~---~d~~ 201 (724)
++..|+ .|+.++|+++ +.++++|+.|+.+.+|+.. .......+..|.+.|.+++|+ ..+||+| .|+.
T Consensus 296 ~~~~H~qeVCgLkws~d-----~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPD-----GNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhcccceeeeeEECCC-----CCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 378888 9999999999 8999999999999999884 346677788899999999999 4788876 4999
Q ss_pred EEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE---eCCeEEEEEEeeC
Q 004914 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG---WGTYIKIASIKTN 256 (724)
Q Consensus 202 i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g---~d~~i~vw~~~~~ 256 (724)
|++||+.++..+..+... ..+|++.| ...+-++++ ..+.|.||+..+.
T Consensus 370 i~fwn~~~g~~i~~vdtg-------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG-------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred EEEEEcCCCcEecccccC-------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 999999999988765443 35899999 444445555 6678999998663
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.74 E-value=9.4e-16 Score=179.71 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=145.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCC---------eeEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEec
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGN---------QVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~---------~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~ 122 (724)
+.|++ |+++|+++|+|+.||.|++|+.... ....+. +...|.+++|++. +.+|++++.||+|++||+
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 33444 7788999999999999999997421 122333 3467999999874 789999999999999999
Q ss_pred cCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE
Q 004914 123 FTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA 197 (724)
Q Consensus 123 ~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~ 197 (724)
.+++. ..+..|. .|++++|+|. ++..|++|+.||.|++|+.. .+.....+.. ...|.++.|. |.+++++
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~-~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSIN-QGVSIGTIKT-KANICCVQFPSESGRSLAFG 636 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECC-CCcEEEEEec-CCCeEEEEEeCCCCCEEEEE
Confidence 98654 4577888 9999999974 27899999999999999986 4444445543 3578999995 6777777
Q ss_pred -cCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 198 -NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 198 -~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|+.|++||++++. .+..+.. |...+..+.|.++..+++| .|+.|++||++..
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~------h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIG------HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred eCCCeEEEEECCCCCccceEecC------CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 79999999998764 3444332 3345778888777778777 8999999999754
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.73 E-value=5.7e-16 Score=150.27 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=143.9
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~ 130 (724)
++|+| |+.+|.+||+|.-+|.|+||.. ++.....+......|.=+.|+|.+..|+.|+.||.+.+|.+.+ +.+..+
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 66777 6778999999999999999999 5555566655556677789999999999999999999999999 666778
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc-----------------------------------------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK----------------------------------------- 168 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~----------------------------------------- 168 (724)
.+|. ++++-.|.|+ |+.+++|..||+|++|+..
T Consensus 187 ~Gh~~~ct~G~f~pd-----GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPD-----GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred cCCCCCcccccccCC-----CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 9998 9999999999 8999999999999999510
Q ss_pred ---------------------------------------------------cCC--ccceEeccCCCCeEEEEEeC-CEE
Q 004914 169 ---------------------------------------------------WLG--YRDQVLHSGEGPVHVVKWRT-SLI 194 (724)
Q Consensus 169 ---------------------------------------------------~~~--~~~~~l~~~~~~V~~l~~~~-~~l 194 (724)
|+. .+.+....|+.+|+.+.|.+ .++
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l 341 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYL 341 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchh
Confidence 000 11122223556677778874 555
Q ss_pred EEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 195 AWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
+++ .+|.|+.||.++|+.......|.. .+..++. ++.++++++ .|++.+||.+
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~------~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQM------GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCch------heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 555 788899999999988887665542 2444555 566677766 7788888865
No 72
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.73 E-value=5.5e-17 Score=156.45 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=157.4
Q ss_pred EEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ceEEEeCCC-Ce
Q 004914 60 VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHR-PM 136 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~-~v 136 (724)
+|+--.++.+++.|+.|+-||+. .+.++.+.+|-..|.|++..|.-+.|+||+.|.+++|||+++. .+..+.+|+ +|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 45545689999999999999994 5557899999999999999999999999999999999999995 567889999 99
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--CEEEEEcCCcEEEEEcCCCceEE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWANDAGVKVYDAANDQRIT 214 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~la~~~d~~i~i~d~~~~~~~~ 214 (724)
.+|.+.|. ...+++|+.|++|++|+.. .|+...++..|...|.+++.++ ..+|+++...|+-|++..|..+.
T Consensus 281 ~~V~~~~~-----dpqvit~S~D~tvrlWDl~-agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 281 ASVMCQPT-----DPQVITGSHDSTVRLWDLR-AGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ 354 (460)
T ss_pred eeEEeecC-----CCceEEecCCceEEEeeec-cCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh
Confidence 99999998 6899999999999999997 6788888889999999999995 45566677789999999888777
Q ss_pred EecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 215 FIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+..+. ..+.++.-..+..+++| .+|.+.+||-+++.
T Consensus 355 nlsgh~------~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 355 NLSGHN------AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cccccc------ceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 644443 34666777666777777 77889999998864
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.4e-16 Score=151.06 Aligned_cols=188 Identities=15% Similarity=0.234 Sum_probs=154.8
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCCC-C
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-P 135 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~ 135 (724)
|-..|+.+++++.|.+..+||. +|..+..+.+|....+.++-+|..+++++.+.|.+.++||++. ..+..|.+|. .
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 6678999999999999999999 7888899999999999999999999999999999999999986 3456789999 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|+++.|..+ ..+++|+.|.+|++|+.+.......++.. .+++..++.+ +.+|+.- .+..|++||+.. ..
T Consensus 360 VTS~vF~~d------d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~R 431 (481)
T KOG0300|consen 360 VTSVVFNTD------DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NR 431 (481)
T ss_pred eeEEEEecC------CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCC-Cc
Confidence 999999988 78999999999999998866666665543 4578888888 4688887 467899999964 44
Q ss_pred EEEecCCCCCCCCCCCCCceeecC----CCeEEEEeCCeEEEEEEeeC
Q 004914 213 ITFIERPRGSPRPELLLPHLVWQD----DTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~~----~~~l~~g~d~~i~vw~~~~~ 256 (724)
+..+++.. ..+|...++|.+|.+ .+++.+|.|..+.-|++...
T Consensus 432 laRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 432 LARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 55555443 455667788999943 35666779999999998763
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=2e-16 Score=173.66 Aligned_cols=179 Identities=22% Similarity=0.227 Sum_probs=151.6
Q ss_pred EEEecCCEEEEEe--CCCeEEEEecCCC-------------eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc
Q 004914 59 CVAVAERMIALGT--HAGTVHILDFLGN-------------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 59 ~~s~~~~~la~g~--~dg~I~i~d~~~~-------------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (724)
.++|+|..+|+|+ .||.++||+...- .+.....|.+.|+|+.|+|||++||+||+|+.|.||...
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 4778999999999 8999999987321 134556799999999999999999999999999999877
Q ss_pred C-------C------------ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC
Q 004914 124 T-------D------------EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP 183 (724)
Q Consensus 124 ~-------~------------~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~ 183 (724)
. + .+..+.+|. .|..++|+|+ +.++++++.|++|.+|+..-. ....++.+|.+.
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-----~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-----DSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL 173 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-----ccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence 2 1 134577888 9999999999 899999999999999987643 788899999999
Q ss_pred eEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 184 VHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 184 V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
|.++.|. |+++|+- .|++|++|.+..-...+.+..|-.......+...+.| ++|++|++.
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 9999999 8999988 6999999998887777777777655555556778999 899999988
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.73 E-value=6e-16 Score=168.00 Aligned_cols=187 Identities=20% Similarity=0.256 Sum_probs=154.7
Q ss_pred CceEEEEec--CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE-
Q 004914 55 DAASCVAVA--ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF- 130 (724)
Q Consensus 55 ~~i~~~s~~--~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~- 130 (724)
+.+.++... +.++++|+.|.++++||. +|.....+.+|...|.++... +..+++|+.|.+|++|++.++....+
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe
Confidence 445555554 889999999999999999 788899999999999888765 55788999999999999999877654
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC-CEEEEE-cCCcEEEEEc
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-~~la~~-~d~~i~i~d~ 207 (724)
.+|. +|+++..+ . ..+++|+.||.|.+|+.. .+.....+.+|.+.|.++.+.+ ..+..+ .|++|++||+
T Consensus 328 ~~h~~~V~~v~~~-~------~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD-E------PLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ccccccEEEEEec-C------CEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecC
Confidence 5488 99999997 3 699999999999999987 6788889999999999999987 766666 7999999999
Q ss_pred CCC-ceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 208 AND-QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 208 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.++ +++.++..+.. .+..+.. .++.|+++ .|+.|++||..+++.
T Consensus 400 ~~~~~c~~tl~~h~~------~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 400 RTKRKCIHTLQGHTS------LVSSLLL-RDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred CchhhhhhhhcCCcc------ccccccc-ccceeEeccccccEEEeecccCce
Confidence 999 78877665543 2333333 35667777 999999999988764
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=2.4e-16 Score=157.42 Aligned_cols=194 Identities=15% Similarity=0.228 Sum_probs=149.3
Q ss_pred EEEEec-CCEEEEEeCCCeEEEEecCCCe--------eEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccC--C
Q 004914 58 SCVAVA-ERMIALGTHAGTVHILDFLGNQ--------VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT--D 125 (724)
Q Consensus 58 ~~~s~~-~~~la~g~~dg~I~i~d~~~~~--------~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~--~ 125 (724)
.+|++. ...+++|+.|++|.+||++... ...+.+|...|.+++|++.. ..+++++.|+.+.|||+++ .
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 467664 4478899999999999994221 35678999999999999865 4789999999999999995 3
Q ss_pred ce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CEEEEE-cC
Q 004914 126 EK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-ND 199 (724)
Q Consensus 126 ~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la~~-~d 199 (724)
+. .....|. +|+|++|+|. ++..||+|+.|++|.+|+.+-...+...+.+|+..|..+.|++ .++|++ .|
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~----~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPF----NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCcccccccCCceeEEEeCCC----CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 33 3467777 9999999998 5789999999999999999877778888899999999999994 677777 79
Q ss_pred CcEEEEEcCCCceEEEe----cCCCC----CCCCCCCCCceee-cCCCeEE-EE-eCCeEEEEEEee
Q 004914 200 AGVKVYDAANDQRITFI----ERPRG----SPRPELLLPHLVW-QDDTLLV-IG-WGTYIKIASIKT 255 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i----~~~~~----~~~~~~~~~~l~~-~~~~~l~-~g-~d~~i~vw~~~~ 255 (724)
+.+.+||+..-.....- ..|.. ..+|...++.+.| ++...++ +. .|+.+.||+...
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999999742211110 01110 2346667888999 4444444 44 889999998864
No 77
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=3.3e-13 Score=140.10 Aligned_cols=179 Identities=16% Similarity=0.264 Sum_probs=130.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe------
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD------ 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~------ 131 (724)
|+.|||..++.+.. ..+.+||. +|...+++++|.+.|.+++|+.+|+.++||+.|..|.+|+..-....++.
T Consensus 19 afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ 97 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ 97 (1081)
T ss_pred EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence 78999997766543 47999999 78888999999999999999999999999999999999986431111110
Q ss_pred ------------------------------CCC---CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec
Q 004914 132 ------------------------------YHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH 178 (724)
Q Consensus 132 ------------------------------~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~ 178 (724)
.++ .+.+++|..+ |++++.|-.+|+|.+-+. .+.....+.
T Consensus 98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD-----GqylalG~~nGTIsiRNk--~gEek~~I~ 170 (1081)
T KOG1538|consen 98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND-----GQYLALGMFNGTISIRNK--NGEEKVKIE 170 (1081)
T ss_pred EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC-----CcEEEEeccCceEEeecC--CCCcceEEe
Confidence 111 5677778777 899999999999998544 354444443
Q ss_pred ---cCCCCeEEEEEeC-------CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC
Q 004914 179 ---SGEGPVHVVKWRT-------SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG 245 (724)
Q Consensus 179 ---~~~~~V~~l~~~~-------~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d 245 (724)
+...+|++++|++ .++++. ...++.+|.+. |+.+..-. .-..-++++++ .+|.++.+| .+
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r------~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR------ALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc------cCCCCchhheeccCCcEEEEccCC
Confidence 3578999999992 567766 57788888875 44443210 01112456666 788888877 88
Q ss_pred CeEEEEE
Q 004914 246 TYIKIAS 252 (724)
Q Consensus 246 ~~i~vw~ 252 (724)
+.+.+|-
T Consensus 244 k~L~~fT 250 (1081)
T KOG1538|consen 244 KQLSLFT 250 (1081)
T ss_pred CceEEEe
Confidence 8888873
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.72 E-value=9.9e-16 Score=156.38 Aligned_cols=185 Identities=22% Similarity=0.350 Sum_probs=150.7
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEe
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFD 131 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~ 131 (724)
.+.+ ++++++++++++.+|.|.+||.. +.....+..|...|++++|+|++.++++++.||.|++||+.+++. ..+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 174 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence 4555 55566788888889999999995 666778888999999999999999999988899999999987554 4566
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc-CCcEEEEEc
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVYDA 207 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-d~~i~i~d~ 207 (724)
.+. ++.+++|+|+ ++.+++++.+|.+.+|+.. .+.....+..+.+++.++.|+ +.+++++. ++.+++|++
T Consensus 175 ~~~~~i~~~~~~~~-----~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 175 GHTGEVNSVAFSPD-----GEKLLSSSSDGTIKLWDLS-TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cCccccceEEECCC-----cCEEEEecCCCcEEEEECC-CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 777 9999999999 7789999999999999875 345555555778899999999 47777776 999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
.+++....+..+. ..+.++.| +++..++++ .++.+++|+
T Consensus 249 ~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTGECVQTLSGHT------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceeEEEccccC------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9888777765332 34677888 556777777 889999995
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=4.1e-16 Score=156.77 Aligned_cols=208 Identities=15% Similarity=0.215 Sum_probs=153.4
Q ss_pred CCccceeccCCCccccCCCceEE--EEe-cCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEe
Q 004914 37 PRLKYQRMGGSLPSLLANDAASC--VAV-AERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCS 112 (724)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~ 112 (724)
|...||+........-..++|++ |+| ++.-+|+.++ -.+.+|+..+.. .+.+......|.+++|..||+++++|.
T Consensus 9 ~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ccchhhhhhcccccccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 34445544333222223344544 555 3334444333 468889885544 455667788899999999999999999
Q ss_pred CCCCEEEEeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 113 DDGSVVINSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
..|.|+|+|..+..+ ..+..|+ ||+.+.|+|. ++..+++|+.|+.+++|+.. .......+.+|+..|.+.+|+
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s-~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLS-TAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEeccc----CCeEEEecCCCceEEEEEcC-CcEEEEEecCCcceeEeeccc
Confidence 999999999665333 4678898 9999999998 56788999999999999885 344445678899999999999
Q ss_pred ---CCEEEEE-cCCcEEEEEcCCC-ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 191 ---TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 191 ---~~~la~~-~d~~i~i~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+.++++| -||.|++||+++. ..+..+. |+..+..+.+ ++|..++++.++.|+|||+.++.
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 4577777 6999999999976 4444432 3345667777 78899999999999999998654
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.71 E-value=8.6e-17 Score=161.29 Aligned_cols=182 Identities=13% Similarity=0.226 Sum_probs=141.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCceE-EEeCCC-
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM-KFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~- 134 (724)
+|+.+|..+.+++.|+.+++||. +|+.+..+.. ...++|+.|.|++ +.+++|+.|+.|+.||++++++. .+..|-
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 68889999999999999999999 6777666643 3468899999999 78999999999999999998865 355555
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc--------------------------cCC-----------------
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK--------------------------WLG----------------- 171 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~--------------------------~~~----------------- 171 (724)
+|..+.|-++ ++.|++.+.|+.+++|+.+ |..
T Consensus 344 ~i~~i~F~~~-----g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 344 AILDITFVDE-----GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred heeeeEEccC-----CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 9999999999 8999999999999999521 100
Q ss_pred --ccceEeccC--CCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec--CCCeEEE
Q 004914 172 --YRDQVLHSG--EGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVI 242 (724)
Q Consensus 172 --~~~~~l~~~--~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~ 242 (724)
.+.+.+.+| .|.-+.+.|+ |.+|++| +||.+.+||.++-+.+..+..+.. .+..+.|. ....+++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~------~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ------PCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc------ceEEEEecCCCcceeEe
Confidence 111222233 3555667787 7899988 799999999999988888766642 35567783 3445555
Q ss_pred E-eCCeEEEEE
Q 004914 243 G-WGTYIKIAS 252 (724)
Q Consensus 243 g-~d~~i~vw~ 252 (724)
| |+|.|++|+
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 5 999999996
No 81
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.5e-16 Score=159.63 Aligned_cols=188 Identities=19% Similarity=0.174 Sum_probs=158.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~ 135 (724)
.+.|...+++++-.+|.|.|||. +...++.+.-...+|.+..|-+..+++++|++|+.|+||+..+ .++..+..|. .
T Consensus 20 d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy 99 (794)
T KOG0276|consen 20 DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY 99 (794)
T ss_pred ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc
Confidence 46777889999999999999999 4555788888888999999999999999999999999999999 4567899999 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CEEEEE-cCCcEEEEEcCCCc
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la~~-~d~~i~i~d~~~~~ 211 (724)
|+|++.||. ..++++++.|-.|++|+-.-.-...+++.+|...|..++|+| +.+|++ -|++|++|.+.+..
T Consensus 100 IR~iavHPt-----~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 100 IRSIAVHPT-----LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred eeeeeecCC-----CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC
Confidence 999999999 689999999999999964311256788899999999999993 455555 69999999999888
Q ss_pred eEEEecCCCCCCCCCCCCCceee---cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW---QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+++.+.. -+.++.+ .+...|++| .|.+|+|||..+.+
T Consensus 175 ~nfTl~gHek------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 175 PNFTLEGHEK------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred Cceeeecccc------CcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 8888775543 3677777 244588999 77789999998764
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=1e-16 Score=147.55 Aligned_cols=204 Identities=17% Similarity=0.262 Sum_probs=167.5
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Cee
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMK 137 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~ 137 (724)
+.|+|-+|++++.||.-.+-+- +|.-+.+|.+|.+.|++.+.+.+-..-+|++.|-+-++||.-+|....--.|+ -|.
T Consensus 25 itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk 104 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVK 104 (334)
T ss_pred CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheee
Confidence 5568999999999998888776 67779999999999999999999999999999999999999997765444455 999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEEcCCcEEEEEcCCCceEE
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDAANDQRIT 214 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~~d~~i~i~d~~~~~~~~ 214 (724)
+++|+.+ ++.+++|+.+..+++++.+-...+...+.+|.+.|..+-|+ . .++.++.|++||+||.+++..+.
T Consensus 105 ~~af~~d-----s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 105 AVAFSQD-----SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred eEEeccc-----chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE
Confidence 9999999 79999999999999998764456677788899999999999 3 44555579999999999999999
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecC
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG 292 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~ 292 (724)
.+..+. .+.++-. +++.++.++.++.|.+||..+- .+.+.+..+|.|.+.+...
T Consensus 180 sL~~~s-------~VtSlEvs~dG~ilTia~gssV~Fwdaksf-----------------~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 180 SLEFNS-------PVTSLEVSQDGRILTIAYGSSVKFWDAKSF-----------------GLLKSYKMPCNVESASLHP 234 (334)
T ss_pred EEecCC-------CCcceeeccCCCEEEEecCceeEEeccccc-----------------cceeeccCccccccccccC
Confidence 877664 2555656 6888999999999999998653 3445566667666555544
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=149.71 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=128.9
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE---------EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---------FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH 161 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---------~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~ 161 (724)
...-+.|..|+|||+++++|+.||-|-+||..+|++.. +--+. +|.|+.|+.+ +..+++|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-----sEMlAsGsqDGk 286 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-----SEMLASGSQDGK 286 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-----HHHhhccCcCCc
Confidence 44567888999999999999999999999999877542 22234 9999999999 899999999999
Q ss_pred EEEEecccCCccceEec-cCCCCeEEEEEe---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC
Q 004914 162 LYLNSKKWLGYRDQVLH-SGEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD 236 (724)
Q Consensus 162 v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~ 236 (724)
|++|... .|...+.+. .|...|+++.|+ .+++.++.|.++++--+.+|++++.+.. |..++....| ++
T Consensus 287 IKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG------HsSyvn~a~ft~d 359 (508)
T KOG0275|consen 287 IKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG------HSSYVNEATFTDD 359 (508)
T ss_pred EEEEEEe-cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC------ccccccceEEcCC
Confidence 9999886 676666665 688899999999 3566667899999999999999887544 4557888888 78
Q ss_pred CCeEEEE-eCCeEEEEEEeeCCC
Q 004914 237 DTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 237 ~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
|..++++ .||+|+||+.++...
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred CCeEEEecCCccEEEecCcchhh
Confidence 8888888 999999999887653
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.69 E-value=9.1e-16 Score=168.53 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=152.3
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC--------C-----------eeEEEcCCccceeEEEEcCCCCEEEEEeC
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG--------N-----------QVKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~--------~-----------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (724)
+.+.| |++||++||+|+.|+.|.||...+ . .+..+.+|...|.+++|+|++.+++|+|.
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 33555 899999999999999999998751 1 24567899999999999999999999999
Q ss_pred CCCEEEEeccCCc-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe-------------------------
Q 004914 114 DGSVVINSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS------------------------- 166 (724)
Q Consensus 114 Dg~v~iwd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~------------------------- 166 (724)
|++|.|||..+.+ +.++.+|. .|.++.|+|- |++|++-+.|+++++|.
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 9999999999954 45688898 9999999999 89999999999999995
Q ss_pred cccC--C------------------------ccceEeccCCCCeEEEEEeC-------C------------EEEEE-cCC
Q 004914 167 KKWL--G------------------------YRDQVLHSGEGPVHVVKWRT-------S------------LIAWA-NDA 200 (724)
Q Consensus 167 ~~~~--~------------------------~~~~~l~~~~~~V~~l~~~~-------~------------~la~~-~d~ 200 (724)
..|. | .....+-+|.+++.++.|++ . ++|+| .|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 1111 0 11223456889999999992 2 56666 699
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+|.||.....+++..+..-. ...+..++| ++|..|.++ .||+|.++.+...
T Consensus 305 SlSVW~T~~~RPl~vi~~lf-----~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLF-----NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cEEEEecCCCCchhhhhhhh-----cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999998777765433221 224778999 677766666 9999999998754
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-14 Score=139.20 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=153.2
Q ss_pred eEEEEecCCEEEEEeC--CCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC
Q 004914 57 ASCVAVAERMIALGTH--AGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (724)
Q Consensus 57 i~~~s~~~~~la~g~~--dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (724)
..||..+.+.++.++. |.+|+..++ +.+-++.|.||...|++++.+|-+..++|++.|++|++||++..++..+-.-
T Consensus 61 ~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 61 LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred EEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 5678778887777776 889999999 5666899999999999999999999999999999999999998666544333
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-CccceEecc---CCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-GYRDQVLHS---GEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~~~~~~l~~---~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
..-..+||+|. |-.||++...+.|.+|+.+-. ..+..++.- .....+.+.|+ |+.+..+ +.+.+.+.|
T Consensus 141 ~~~pi~AfDp~-----GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 141 SGRPIAAFDPE-----GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred CCCcceeECCC-----CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 33344789999 889999988889999987644 344444432 35678899999 7777666 678899999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
.-+|..+..+....+... .....+| ++++.+++| .||+|.+|+++++...
T Consensus 216 Af~G~~~~tfs~~~~~~~---~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGN---LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ccCCcEeeeEeeccCCCC---cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 999998888776643322 2245566 899999999 7899999999876543
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=164.22 Aligned_cols=188 Identities=21% Similarity=0.309 Sum_probs=160.4
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEE-EcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEe
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKE-FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (724)
+.++|...+++++++|+.+++|++|+. ++..+.. +.+|.+.|+++++..-+..+++|+.|.++++||..++.+. .+.
T Consensus 209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred chhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 446777777899999999999999999 6777766 9999999999999887889999999999999999998875 578
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCC
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~ 209 (724)
+|. .|.++...+. .+++|+.|.+|++|+.. ++....++.+|.++|.++..++.+++++ .|++|++||+.+
T Consensus 289 gh~stv~~~~~~~~-------~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 289 GHTSSVRCLTIDPF-------LLVSGSRDNTVKVWDVT-NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCCceEEEEEccCc-------eEeeccCCceEEEEecc-CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh
Confidence 888 8999888765 78889999999999986 6777888888999999999997776666 699999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++++..+..+. ..+.++.+.....+++| -|++|++||+++.
T Consensus 361 ~~cl~sl~gH~------~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 361 GKCLKSLSGHT------GRVYSLIVDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ceeeeeecCCc------ceEEEEEecCcceEEeeeeccceEeecCCch
Confidence 99999876544 45677766442677777 8999999999987
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=6.1e-16 Score=162.61 Aligned_cols=185 Identities=19% Similarity=0.286 Sum_probs=154.1
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-------C-c--
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-------D-E-- 126 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-------~-~-- 126 (724)
++|.|.++++++|+.+|.+.+||+ ....+.++++|.+.|++++.+||++.+++||.|.+|++||..- . +
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 348889999999999999999999 5555677889999999999999999999999999999998531 0 0
Q ss_pred ---------------------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCC
Q 004914 127 ---------------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG 160 (724)
Q Consensus 127 ---------------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg 160 (724)
...+-+|. ||.|+.++|+ +..+++|+.|.
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-----SklivTgSADK 572 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-----SKLIVTGSADK 572 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-----cCeEEeccCCC
Confidence 01234788 9999999999 89999999999
Q ss_pred eEEEEecccCCccceEeccCCCCeEEEEEeC---CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC
Q 004914 161 HLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD 236 (724)
Q Consensus 161 ~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~ 236 (724)
+|++|-.+ .|.+-+.+..|+..|.++.|.| .+.++|.|+.|+-||-..-+.+..++.+... +.+++- ++
T Consensus 573 nVKiWGLd-FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e------v~cLav~~~ 645 (888)
T KOG0306|consen 573 NVKIWGLD-FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE------VWCLAVSPN 645 (888)
T ss_pred ceEEeccc-cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe------eeeeEEcCC
Confidence 99999887 4788888999999999999995 3445557999999999888888887766543 445555 78
Q ss_pred CCeEEEE-eCCeEEEEEEe
Q 004914 237 DTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 237 ~~~l~~g-~d~~i~vw~~~ 254 (724)
|.+++++ .|.+|++|.-.
T Consensus 646 G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred CCeEEeccCCceeEeeecc
Confidence 8888888 88999999653
No 88
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=5.1e-15 Score=147.21 Aligned_cols=184 Identities=19% Similarity=0.214 Sum_probs=140.2
Q ss_pred CCEEEEEeCCCeEEEEecCCC--e--eE------------------EEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEE
Q 004914 64 ERMIALGTHAGTVHILDFLGN--Q--VK------------------EFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVIN 120 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~--~--~~------------------~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iw 120 (724)
|+++|+|+.+..|.|||+.-. . .. .-.+|+..|.+++|+..- +.|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999998311 0 00 013588999999998764 468999999999999
Q ss_pred eccCCceEE-EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---C-CEE
Q 004914 121 SLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T-SLI 194 (724)
Q Consensus 121 d~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~-~~l 194 (724)
|+.++++.. +..|. .|.++.|+|. .+..+++|+.||+|.+.+.+-.+ ....-....+.|-.+.|+ . .++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~----~p~~LLsGs~D~~V~l~D~R~~~-~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPY----EPSVLLSGSYDGTVALKDCRDPS-NSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCC----CceEEEeccccceEEeeeccCcc-ccCceEEeccceEEEEecCCCceeEE
Confidence 999988764 56566 9999999998 47899999999999999887322 222222346789999999 2 344
Q ss_pred EEEcCCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 195 AWANDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 195 a~~~d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
++..||.++-+|++. ++++.++..|.. .+.+++. ....+++++ .+++|++|++....+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~------~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDD------EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccC------CcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 455799999999996 478888777654 3556666 355677777 999999999976543
No 89
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.9e-15 Score=150.25 Aligned_cols=188 Identities=19% Similarity=0.220 Sum_probs=147.1
Q ss_pred CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCC--ceEEEeCCCCeeEE
Q 004914 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTD--EKMKFDYHRPMKAI 139 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~--~~~~~~~~~~v~~v 139 (724)
.+.||+|+.|.+|.+||+ +|++...+..|.+.|.++.|+|. +..|++|+.||+|.+.|++.. ....+.+...|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 468999999999999999 78888888889999999999986 568999999999999999852 22345666689999
Q ss_pred EeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCceEEE
Q 004914 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITF 215 (724)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~ 215 (724)
+|+|. +...|++++.||+++-++.+-.+....+++.|.++|.+++++ +.+++++ .|+.|++|++........
T Consensus 336 ~w~~~----se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 336 AWDPH----SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred EecCC----CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 99998 467899999999999999987788899999999999999999 5677776 799999999975433221
Q ss_pred ecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 216 IERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
..+.-...+ .+|.++ .....+++| ..+.++|||+.+..+.
T Consensus 412 ~~~~~~~~r----l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGR----LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccc----eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 111100000 222333 345677777 6678999999887643
No 90
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=1.8e-15 Score=147.20 Aligned_cols=186 Identities=15% Similarity=0.211 Sum_probs=140.8
Q ss_pred cCCEEEEEeCCCeEEEEecCC-----------------CeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccC
Q 004914 63 AERMIALGTHAGTVHILDFLG-----------------NQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~-----------------~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~ 124 (724)
+..+.|+=+..|.|.||++.. .++.++.+|.+.=..++|||--. .++||.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 344566667789999999731 22567788988888999999433 477887788999999988
Q ss_pred CceE----EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc-ceEeccCCCCeEEEEEeC--CEEEE
Q 004914 125 DEKM----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR-DQVLHSGEGPVHVVKWRT--SLIAW 196 (724)
Q Consensus 125 ~~~~----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~-~~~l~~~~~~V~~l~~~~--~~la~ 196 (724)
+.-. .+.+|. .|..++|+|. ....|++|+.||.|++|+.+-..++ ....+.|.+-|..|+|++ .+||+
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSpt----E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPT----EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred CceeecCccccccccchhhhccCCc----cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence 6532 456688 9999999998 3689999999999999998833232 233367889999999993 47888
Q ss_pred E-cCCcEEEEEcCC---CceEEEecCCCCCCCCCCCCCceeec---CCCeEEEEeCCeEEEEEEeeCCC
Q 004914 197 A-NDAGVKVYDAAN---DQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 197 ~-~d~~i~i~d~~~---~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
| .||+++|||++. ++++..+..+.. .+.++.|+ ++.+.++|.|+.|.+||+.....
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~------pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKA------PITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccC------CeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 8 689999999984 566667666653 48899994 34444555999999999986543
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-14 Score=127.53 Aligned_cols=200 Identities=14% Similarity=0.250 Sum_probs=149.5
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-------CCCe---------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEE
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-------LGNQ---------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-------~~~~---------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw 120 (724)
.++|.|.|++.|+|+...+.+|--. .+.. .+.-+-|.++|.|.+|+|+|..|++|+.|.+|++.
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 3478899999999999999998643 1111 12335589999999999999999999999999998
Q ss_pred eccC------CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEeccCCCCeEEE-EEeC
Q 004914 121 SLFT------DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVV-KWRT 191 (724)
Q Consensus 121 d~~~------~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l~~~~~~V~~l-~~~~ 191 (724)
.++. |.-..++-|. .|..++|..+. .+++..+++++. |..|++-+.. .|.....+.+|.+.|.++ .|+|
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~-~g~~~~a~sghtghilalyswn~ 194 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCG-RGQGFHALSGHTGHILALYSWNG 194 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCC-CcCceEEEecCCCcceEEEeecC-CCCcceeecCCcccEEEEEEecC
Confidence 7654 3345677777 99999997663 234567777653 4456665654 467777888999999887 6889
Q ss_pred CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCC-CCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 192 SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR-PELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~-~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
-+++++ .|.+|++||++-..++.++...-...+ ....+..++. +.+++|++| .|.+-.+||++.+..
T Consensus 195 ~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 195 AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 888888 699999999998888877654321111 2234556666 788999999 888899999997653
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=8e-15 Score=138.21 Aligned_cols=203 Identities=14% Similarity=0.208 Sum_probs=153.0
Q ss_pred CceEEEEe---cCCEEEEEeCCCeEEEEecCCCe-------e---------EEEcCCccceeEEEEcCCC-CEEEEEeCC
Q 004914 55 DAASCVAV---AERMIALGTHAGTVHILDFLGNQ-------V---------KEFPAHTAAVNDLSFDVDG-EYVGSCSDD 114 (724)
Q Consensus 55 ~~i~~~s~---~~~~la~g~~dg~I~i~d~~~~~-------~---------~~~~~h~~~V~~l~~s~~g-~~l~s~~~D 114 (724)
++|.++.. .|+++++|+.||.|.+||+.... + ..-.+|.-.|.++.|-|-. ..+.|++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 44444444 47899999999999999993211 1 1124588899999999854 478889999
Q ss_pred CCEEEEeccCC-ceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--
Q 004914 115 GSVVINSLFTD-EKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-- 191 (724)
Q Consensus 115 g~v~iwd~~~~-~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-- 191 (724)
.+++|||..+- ....++....|.+-+++|--. +..++++|..+-.|++.+.. .|....++.+|.+.|.++.|++
T Consensus 124 htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ceEEEeecccceeeEEeecCceeehhhcChhhh--cceEEEEecCCCcEEEEecc-CCcceeeeccccCceEEEEeccCc
Confidence 99999999984 445677777899999999621 13578889999999999886 6788889999999999999994
Q ss_pred C-EEEEE-cCCcEEEEEcCCC-ceEEEecCCCC--------CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 192 S-LIAWA-NDAGVKVYDAAND-QRITFIERPRG--------SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 192 ~-~la~~-~d~~i~i~d~~~~-~~~~~i~~~~~--------~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
. +++++ .||.|++||++.. .+...+..+.+ .+.+...+..++| +++..++++ .|+.+++|+...+..
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 3 45666 5999999999854 44545544431 2334455778999 777777666 999999999988766
Q ss_pred CC
Q 004914 259 NV 260 (724)
Q Consensus 259 ~~ 260 (724)
..
T Consensus 281 tl 282 (397)
T KOG4283|consen 281 TL 282 (397)
T ss_pred cc
Confidence 53
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.67 E-value=2.5e-15 Score=156.94 Aligned_cols=174 Identities=15% Similarity=0.186 Sum_probs=144.0
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEE
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAIS 140 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~ 140 (724)
++..+++|+.|++|.+|.. ...+...+++|...|.+++...++. ++|||.|.++++|-... ....+.+|. +|++++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-LVYSLQGHTASVWAVA 147 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-hhcccCCcchheeeee
Confidence 4557999999999999999 5566789999999999999888888 99999999999998743 223488899 999999
Q ss_pred eCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecC
Q 004914 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIER 218 (724)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~ 218 (724)
.-|+ +.+++|+.|.+|++|.. +...+++.+|...|+++++- +.++.+++||.|+.|++ +|.++.....
T Consensus 148 ~l~e------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~g 217 (745)
T KOG0301|consen 148 SLPE------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHG 217 (745)
T ss_pred ecCC------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeec
Confidence 9998 59999999999999754 47788899999999999988 47888889999999999 6677665433
Q ss_pred CCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEe
Q 004914 219 PRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 219 ~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
|..++.+++. .++..++++ .|+++++|+..
T Consensus 218 ------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 218 ------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ------cceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 4456777773 445555544 99999999875
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.67 E-value=6.3e-15 Score=145.92 Aligned_cols=191 Identities=14% Similarity=0.182 Sum_probs=154.7
Q ss_pred CceEEEEecC--CEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEE
Q 004914 55 DAASCVAVAE--RMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKF 130 (724)
Q Consensus 55 ~~i~~~s~~~--~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~ 130 (724)
..++++.+.+ ..+.+|+.|..+.++|.. ++.+..++||+..|+.+.++|+...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 4466665544 789999999999999994 55568899999999999999999999999999999999987743 3456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CCCCeEEEEEe--CCEEEEE-cCCcEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~~~V~~l~~~--~~~la~~-~d~~i~i 204 (724)
..|. +|+.+..+|. |.+|++++.||+..+.+.. .++....... ..-.+++.+|+ |.++.++ .|+.++|
T Consensus 300 ~~h~~~V~~ls~h~t-----geYllsAs~d~~w~Fsd~~-~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPT-----GEYLLSASNDGTWAFSDIS-SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccceeeeeccC-----CcEEEEecCCceEEEEEcc-CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 6777 9999999999 8999999999999887775 4554443332 23458999999 5666666 6999999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
||+.++.....++ +|...+..+.| .+|.+|+++ .|++|++||+|...
T Consensus 374 wdlks~~~~a~Fp------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 374 WDLKSQTNVAKFP------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EEcCCccccccCC------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 9999888666644 35556888999 688899999 77779999999755
No 95
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=147.43 Aligned_cols=149 Identities=20% Similarity=0.332 Sum_probs=120.2
Q ss_pred eEEEEec-CCEEEEEeCCCeEEEEec-CCCe---eEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCC---ce
Q 004914 57 ASCVAVA-ERMIALGTHAGTVHILDF-LGNQ---VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD---EK 127 (724)
Q Consensus 57 i~~~s~~-~~~la~g~~dg~I~i~d~-~~~~---~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~---~~ 127 (724)
..+|||- -..+++|..-+.|++|.. +|.- ...|.+|+.+|-+++|||..+ .|+|||-||+|+|||++.+ .+
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 5578883 335779999999999998 4332 245678999999999999754 7899999999999999986 34
Q ss_pred EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEe---CCEEE-EEcCC
Q 004914 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR---TSLIA-WANDA 200 (724)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~---~~~la-~~~d~ 200 (724)
...+.|. -|+.|.|+.. -.+|++|+.||++.+|+.+... ..+..+.-|..||+++.|+ ...++ ++.|.
T Consensus 296 ~~~kAh~sDVNVISWnr~-----~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRR-----EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred eEeeccCCceeeEEccCC-----cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 4557777 9999999998 3599999999999999987432 4566778899999999999 34454 45899
Q ss_pred cEEEEEcCCC
Q 004914 201 GVKVYDAAND 210 (724)
Q Consensus 201 ~i~i~d~~~~ 210 (724)
+|.+||+...
T Consensus 371 QitiWDlsvE 380 (440)
T KOG0302|consen 371 QITIWDLSVE 380 (440)
T ss_pred cEEEEEeecc
Confidence 9999999743
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=3.5e-15 Score=149.01 Aligned_cols=227 Identities=15% Similarity=0.170 Sum_probs=168.6
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEec-CCCee----E-------------EE-cCCccceeEEEEcCCCCEEEEEeCC
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDF-LGNQV----K-------------EF-PAHTAAVNDLSFDVDGEYVGSCSDD 114 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~----~-------------~~-~~h~~~V~~l~~s~~g~~l~s~~~D 114 (724)
+++| +++++++..+++.+|+|.-|+. +|... . .- +.|...|.+++.++||++|++|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 3444 6778899999999999999998 44321 1 11 3788899999999999999999999
Q ss_pred CCEEEEeccCCc-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--
Q 004914 115 GSVVINSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 115 g~v~iwd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-- 190 (724)
..|.||+.++.+ +..+.+|+ .|.+++|--. ...+++++.|+.+.+|+.. ......++.+|.+.|.+|.-.
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-----t~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-----TSELYSASADRSVKVWSID-QLSYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecC-----ccceeeeecCCceEEEehh-HhHHHHHHhCCccceeeechhcc
Confidence 999999999955 45679999 9999999877 6889999999999999876 345567788999999998776
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCCCCCCCc-ccc
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSNVANGT-YRH 267 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~-~~~ 267 (724)
.+.+.++ .|+++++|++.....+-... + ...+-++++.+...+++| .+|.|.+|++-+..+...... +..
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesqlifrg-~------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQLIFRG-G------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred cceEEeccccceeEEEeccccceeeeeC-C------CCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 5777777 79999999996444333211 1 234667888788888888 899999999987765422111 111
Q ss_pred CCCeEEEEEEEeeeceEEEeeeecC-CceEEEEe
Q 004914 268 VGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAY 300 (724)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~gi~~~~-~~l~~l~~ 300 (724)
.|.. ...+.+++|.+++... ..++..+.
T Consensus 371 ~~~~-----~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 371 IPEL-----DPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred cCCc-----cccccccceeeeEecccCceEEecC
Confidence 1110 1122346888888877 55665554
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=2.3e-14 Score=150.87 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=125.2
Q ss_pred ceEEEEe--cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ceEEEe
Q 004914 56 AASCVAV--AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFD 131 (724)
Q Consensus 56 ~i~~~s~--~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~ 131 (724)
.++|..+ +.-.||+|..||.|++|+. ++....++.+|..+|+++.|+..|..|+|||.|+.|.+||+-.. -..++.
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~ 146 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLR 146 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEee
Confidence 5778655 4446799999999999999 45556789999999999999999999999999999999999874 456889
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCC-EEEEEcCCcEEEEEc
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTS-LIAWANDAGVKVYDA 207 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~-~la~~~d~~i~i~d~ 207 (724)
+|. .|+..-|..+ .+.+++.+.|+.+++|+.. ......+...|.+.|+++++.++ ++++++|+.+++|++
T Consensus 147 GHkd~iT~~~F~~~-----~~~lvS~sKDs~iK~WdL~-tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 147 GHKDSITQALFLNG-----DSFLVSVSKDSMIKFWDLE-TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred cchHHHhHHhccCC-----CeEEEEeccCceEEEEecc-cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 999 9998888875 5899999999999999986 55666777789999999999975 455558999999998
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.66 E-value=6.4e-15 Score=148.72 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=119.6
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--eE---EE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCC
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--KM---KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--~~---~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
..++.|+..|++++++|.|.+|+|||-|.+|++||+..-. .. .+ .... .|+++.|+|. +..|++.+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-----g~~iLvvsg~ 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-----GDQILVVSGS 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-----CCeEEEEecC
Confidence 3678899999999999999999999999999999998622 11 22 2233 8999999998 7888777777
Q ss_pred CeEEEEecccCCccc-------------eEeccCCCCeEEEEEe----CCEEEEEcCCcEEEEEcCCCc-eEEEecCCCC
Q 004914 160 GHLYLNSKKWLGYRD-------------QVLHSGEGPVHVVKWR----TSLIAWANDAGVKVYDAANDQ-RITFIERPRG 221 (724)
Q Consensus 160 g~v~l~~~~~~~~~~-------------~~l~~~~~~V~~l~~~----~~~la~~~d~~i~i~d~~~~~-~~~~i~~~~~ 221 (724)
...+++++. |... ..-++|-..+++.+|+ +.++.++.|+++||||+...+ ....+... .
T Consensus 236 aqakl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~ 312 (641)
T KOG0772|consen 236 AQAKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-P 312 (641)
T ss_pred cceeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-c
Confidence 788888764 3221 1224567778999999 478888899999999998543 33333222 1
Q ss_pred CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 222 SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 222 ~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
..+....+...+| +++..++.| .||+|.+|+...
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 2233345667789 788888888 999999999843
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=4.5e-15 Score=141.00 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=162.8
Q ss_pred CcCCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEec------CC---------C--------------
Q 004914 34 EEEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDF------LG---------N-------------- 84 (724)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~------~~---------~-------------- 84 (724)
....+.+|..+.+.+..+ .|++.+.++++++.|++-+||.. .. .
T Consensus 179 sg~CL~~Y~GH~GSVNsi-------kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSI-------KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred cccceeeecccccceeeE-------EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 345667788888777766 78888999999999999999961 00 0
Q ss_pred ------------eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCC
Q 004914 85 ------------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 85 ------------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++.+. .+.+|. ..+.++-+|. .
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-----Q 326 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-----Q 326 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-----c
Confidence 13457889999999999999999999999999999999998875 578888 9999999999 6
Q ss_pred CEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEE-cCCcEEEEEcCCC-ceEEEecCCCCCCCCCC
Q 004914 151 RRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPEL 227 (724)
Q Consensus 151 ~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~-~d~~i~i~d~~~~-~~~~~i~~~~~~~~~~~ 227 (724)
+++++.+.|.+.++|+.+-.-....++.+|...|+++.|. +.-++++ .|.+|++||+++. .++.++....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS------- 399 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS------- 399 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC-------
Confidence 8999999999999998874456778899999999999999 5555555 7899999999864 4555554332
Q ss_pred CCCceeecCCC-eEEEE-eCCeEEEEEEeeCCCC
Q 004914 228 LLPHLVWQDDT-LLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 228 ~~~~l~~~~~~-~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
.+..++.+.+. .+++- .+..|++||++.....
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 34455554444 66666 5556999999865433
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.66 E-value=5.1e-15 Score=140.30 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=142.3
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEecC--CCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC
Q 004914 59 CVAV-AERMIALGTHAGTVHILDFL--GNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~~--~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (724)
+||| ...+++.|+.||+||+|+++ |..+ +....|.++|.+++|+.+|+.+++|+.|+.+++||+.++++..+..|.
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 4777 45688899999999999993 3443 445679999999999999999999999999999999999999999999
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCce
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
+|.++.|-+.+. ...+++|+.|.+++.|+.+ ......++. -.+.|.++..-..+++++ .++.|.+|+++.+..
T Consensus 114 ~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R-~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 114 APVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTR-SSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred cceeEEEEecCCC---cceeEecccccceeecccC-CCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 999999988732 3589999999999999887 333333322 345677776665566665 799999999986644
Q ss_pred EE-EecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 IT-FIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~-~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.. .+..| ..-...+-.++.+....+.| -.|.+-|-.+..+.
T Consensus 189 e~k~~~Sp----Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 189 EFKRIESP----LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred hhhhhcCc----ccceeeEEEEEecCCceEeeeecceEEEEecCCCC
Confidence 32 22111 11112343445666666777 88898888887754
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=3.1e-15 Score=149.47 Aligned_cols=188 Identities=18% Similarity=0.242 Sum_probs=147.5
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCC---ee--------EEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCc-
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGN---QV--------KEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE- 126 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~---~~--------~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~- 126 (724)
+-.+...+|+++..|.|.|||.+.. .. ..+.+|.+.=.+++|++... ++++|+.|++|++||+....
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 4346778999999999999998321 11 26788988778899998755 69999999999999997621
Q ss_pred -------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc-CCccceEeccCCCCeEEEEEe---CCEE
Q 004914 127 -------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW-LGYRDQVLHSGEGPVHVVKWR---TSLI 194 (724)
Q Consensus 127 -------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~-~~~~~~~l~~~~~~V~~l~~~---~~~l 194 (724)
...+.+|. .|..++|+|. ....|++++.||.+.+|+.+- ..........|.++|.|++|+ +.+|
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~----h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPL----HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred CCccccceEEeecCCcceehhhcccc----chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 23568888 9999999997 468999999999999999874 334556677899999999999 4788
Q ss_pred EEE-cCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 195 AWA-NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|++ .|++|++||++.-. ++.+++. |..-+.++.| .....|+++ .|+.+.|||+..-.
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEG------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccC------CCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 888 59999999999543 3444433 4445788999 356677777 99999999997544
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.2e-15 Score=147.78 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=149.5
Q ss_pred CceEEEEecCC---EEEEEeCCCeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE
Q 004914 55 DAASCVAVAER---MIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 55 ~~i~~~s~~~~---~la~g~~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
+.|.|++-+.+ .+++|+.||.|+|||+.. .+...+.+|.+.|.+|+++. ..++++|+|.+|+.|-+......++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTI 144 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceee
Confidence 67888887765 579999999999999954 55789999999999999987 6789999999999999988766677
Q ss_pred eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEE
Q 004914 131 DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d 206 (724)
.+...+..+.-+.. +..|+++|. .|.+|+.. -..+.+.+.-+...|.++.|+ ..+|+++ +|++|.+||
T Consensus 145 lg~s~~~gIdh~~~-----~~~FaTcGe--~i~IWD~~-R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRK-----NSVFATCGE--QIDIWDEQ-RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred eccccccccccccc-----cccccccCc--eeeecccc-cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 77777777777666 688999987 78898764 234555566677789999999 3677777 899999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++.+.++..+... +....++| +....+++| .|.+++.+|++.-+
T Consensus 217 ~R~~~Pl~KVi~~-------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 217 LRQASPLKKVILT-------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred cccCCccceeeee-------ccccceecCccccceeeccccccceehhhhhhc
Confidence 9998887754322 23567889 666777788 88899999998754
No 103
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.65 E-value=1.5e-17 Score=151.70 Aligned_cols=114 Identities=36% Similarity=0.613 Sum_probs=102.1
Q ss_pred hhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcch-hhhHHHhhhcCCCCHHHHH
Q 004914 606 IQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDL-KMLLPFLRSSQHYTLEKAY 684 (724)
Q Consensus 606 ~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~-~~ll~fL~~~~~y~~~~al 684 (724)
++..+..+++.||+.|.+. +.+..+..||+.++..++...+.+|+.+++||++++| ++|++||+++.+||+++|+
T Consensus 2 ~~~~~~~~~~~vi~~~~~~----~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~ 77 (143)
T PF00637_consen 2 IESTDPLEISEVISAFEER----NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKAL 77 (143)
T ss_dssp HHHCTTSCSCCCHHHCTTT----T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHH
T ss_pred CcCCCccCHHHHHHHHHhC----CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHH
Confidence 3444678999999999853 5678888999999988877889999999999999998 9999999999999999999
Q ss_pred HHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCccccC
Q 004914 685 EICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEVF 724 (724)
Q Consensus 685 ~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~Ai 724 (724)
++|++++++++++|||+|+|+|++|+.+ +.+++|++.|+
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~ 116 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAI 116 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCT
T ss_pred HHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHH
Confidence 9999999999999999999999999998 88999999986
No 104
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=1.1e-14 Score=145.40 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=143.1
Q ss_pred CceEE--EEec--CCEEEEEeCCCeEEEEecCCCe-----eEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccC
Q 004914 55 DAASC--VAVA--ERMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 55 ~~i~~--~s~~--~~~la~g~~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~ 124 (724)
++|+| |.|. .+.+|+|...|.|-+||+.++. +..+..|+++|++|.|+|.. ..+.+.|.||+|+.-|+.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 45666 4553 3689999999999999994322 56778899999999999976 4799999999999999988
Q ss_pred Cc---eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE
Q 004914 125 DE---KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA 197 (724)
Q Consensus 125 ~~---~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~ 197 (724)
+. +...+... .+.++.|+.+ ...++.|+.=|...+|+.+..+.....+..|+..|++++++ +.+++++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e-----~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAE-----SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCC-----CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 54 33444344 7778888777 57777777778999999986676676677788899999999 5778877
Q ss_pred -cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEEeCCeEEEEEEe
Q 004914 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIASIK 254 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~~~ 254 (724)
.|++.+|||++.-..... + --....|...+.+..| .++.++.+|.|+.|+|||..
T Consensus 342 s~D~T~kIWD~R~l~~K~s-p-~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKAS-P-FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccCcceeeeehhhhcCCCC-c-ceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 699999999984221111 0 0012234445667777 35565555599999999985
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.65 E-value=2.9e-15 Score=156.45 Aligned_cols=182 Identities=14% Similarity=0.181 Sum_probs=145.9
Q ss_pred CceEEEEec-CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC
Q 004914 55 DAASCVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (724)
Q Consensus 55 ~~i~~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (724)
..|+|++.. ...+++|+.|.++++|-. ++....+.+|+.+|+++..-|++ .++|||.|.+|++|.- .....++.+|
T Consensus 102 snVC~ls~~~~~~~iSgSWD~TakvW~~-~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~tf~gH 178 (745)
T KOG0301|consen 102 SNVCSLSIGEDGTLISGSWDSTAKVWRI-GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKTFSGH 178 (745)
T ss_pred cceeeeecCCcCceEecccccceEEecc-hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhhhhccc
Confidence 335666653 234789999999999986 33345589999999999999988 7889999999999986 3445678999
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEEcCCcEEEEEcCC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWANDAGVKVYDAAN 209 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~~d~~i~i~d~~~ 209 (724)
. .|+++++-|+ ..|++++.||.|++|+. +|......++|..-|.+++.. +. ++.+|.|++++||+..
T Consensus 179 tD~VRgL~vl~~------~~flScsNDg~Ir~w~~--~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~- 249 (745)
T KOG0301|consen 179 TDCVRGLAVLDD------SHFLSCSNDGSIRLWDL--DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD- 249 (745)
T ss_pred hhheeeeEEecC------CCeEeecCCceEEEEec--cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-
Confidence 9 9999999998 78999999999999988 488888899999999999844 34 4455589999999976
Q ss_pred CceEEEecCCCCCCCCCCCCCcee-ecCCCeEEEEeCCeEEEEEEee
Q 004914 210 DQRITFIERPRGSPRPELLLPHLV-WQDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~-~~~~~~l~~g~d~~i~vw~~~~ 255 (724)
.+...+..|... +.++. |.+|..++.|.||.||||..+.
T Consensus 250 -e~~q~I~lPtts------iWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 -ECVQVITLPTTS------IWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -ceEEEEecCccc------eEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 777777666532 33333 4678777777999999998764
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.1e-15 Score=154.84 Aligned_cols=190 Identities=16% Similarity=0.238 Sum_probs=154.8
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecC-CCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEe
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFL-GNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFD 131 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~-~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~ 131 (724)
..|.|++..+..+.+|+.+|.|..+|+. ... ...+.+|...|..+.|++++.++|||+.|+.+.|||... ....++.
T Consensus 261 ~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~ 340 (484)
T KOG0305|consen 261 SRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT 340 (484)
T ss_pred ceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe
Confidence 5688899999999999999999999993 332 334888999999999999999999999999999999966 5567888
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEe--cCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CEEEEE--cCCcEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAG--GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA--NDAGVK 203 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g--~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la~~--~d~~i~ 203 (724)
.|. .|.+++|+|- +...||+| +.|++|++|+.. .+.....+. -.+.|+++.|+. .++++. +++.|.
T Consensus 341 ~H~aAVKA~awcP~----q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 341 EHTAAVKALAWCPW----QSGLLATGGGSADRCIKFWNTN-TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ccceeeeEeeeCCC----ccCceEEcCCCcccEEEEEEcC-CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 899 9999999998 47889986 468999999885 454444333 245799999993 455444 578899
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
||+..+.+.+..+.. |...+..++| +++..+++| .|.++++|++...
T Consensus 415 lw~~ps~~~~~~l~g------H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLG------HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecC------CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999998777766444 4445788888 788999999 9999999999764
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=1.8e-14 Score=133.81 Aligned_cols=182 Identities=19% Similarity=0.289 Sum_probs=142.3
Q ss_pred ceeccCCCccccCCCceEEEEe-cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEE
Q 004914 41 YQRMGGSLPSLLANDAASCVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (724)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~-~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (724)
+.++++.+..+ ||.| +...+++++.|.+|++||. .++++..+....+.|. +.|+|+|.+++.++.|..|.
T Consensus 60 ~~gh~~svdql-------~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 60 YRGHTDSVDQL-------CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred ccCCCcchhhh-------eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEE
Confidence 44555555555 6666 6789999999999999999 7777776665555554 78999999999999998887
Q ss_pred EEeccCCc------------------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEE
Q 004914 119 INSLFTDE------------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVA 155 (724)
Q Consensus 119 iwd~~~~~------------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~ 155 (724)
..|.++.+ +..++.|. ...||.|+|+ |++|++
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-----GryfA~ 206 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-----GRYFAT 206 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-----CceEee
Confidence 77755421 12334566 7778999999 999999
Q ss_pred ecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCce
Q 004914 156 GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHL 232 (724)
Q Consensus 156 g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l 232 (724)
|+.|..+.+|+.. .--..+.+..++-||..++|+ |++||.+ .|..|-|=++.+|..+..++... ....+
T Consensus 207 GsADAlvSLWD~~-ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~-------~t~tV 278 (313)
T KOG1407|consen 207 GSADALVSLWDVD-ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG-------PTFTV 278 (313)
T ss_pred ccccceeeccChh-HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC-------CceeE
Confidence 9999999999875 345567778889999999999 8999998 58899999999999988765443 35678
Q ss_pred ee-cCCCeEEEE
Q 004914 233 VW-QDDTLLVIG 243 (724)
Q Consensus 233 ~~-~~~~~l~~g 243 (724)
+| +...+|+-+
T Consensus 279 AWHPk~~LLAyA 290 (313)
T KOG1407|consen 279 AWHPKRPLLAYA 290 (313)
T ss_pred EecCCCceeeEE
Confidence 99 555666655
No 108
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=3.7e-14 Score=131.80 Aligned_cols=190 Identities=17% Similarity=0.247 Sum_probs=145.9
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe-e--EEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCceEEE-e
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ-V--KEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKMKF-D 131 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~-~--~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~~~-~ 131 (724)
-.+|+.+|..+++|+.|+++.+|++.+.. . ...++|.+.|-.++|+|. ...+++++.|.+|++||.+.+++... .
T Consensus 25 Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~ 104 (313)
T KOG1407|consen 25 SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE 104 (313)
T ss_pred EEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence 34899999999999999999999995432 2 345789999999999985 45899999999999999999877643 3
Q ss_pred CCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc------------------cC----------C------------
Q 004914 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK------------------WL----------G------------ 171 (724)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~------------------~~----------~------------ 171 (724)
....-.-+.|+|+ +.++++|+.|..|...+.+ |. |
T Consensus 105 ~~~eni~i~wsp~-----g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 105 TKGENINITWSPD-----GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred ccCcceEEEEcCC-----CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence 3334456789998 8999999988887766411 10 1
Q ss_pred ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC
Q 004914 172 YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT 246 (724)
Q Consensus 172 ~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~ 246 (724)
+....+..|...+.||.|+ |+++|+| .|..+.+||+..--+...+.+.. -.+..++| .++++|++| .|.
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld------wpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD------WPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc------CceEEEEeccCcceeeccCccc
Confidence 2334455677777888888 7999998 69999999998766666654443 23667888 699999999 888
Q ss_pred eEEEEEEeeCC
Q 004914 247 YIKIASIKTNQ 257 (724)
Q Consensus 247 ~i~vw~~~~~~ 257 (724)
.|-|-++.+|.
T Consensus 254 ~IDIA~vetGd 264 (313)
T KOG1407|consen 254 FIDIAEVETGD 264 (313)
T ss_pred eEEeEecccCC
Confidence 88888887765
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.64 E-value=2.3e-15 Score=138.74 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=145.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCC--eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHRP 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~~ 135 (724)
+|+.+.+.|++|+.+..++|||++.. +...+.+|++.|..+-|....+.|+|.+.|++|++||.+++.. .++....+
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~ 186 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP 186 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC
Confidence 47778899999999999999999543 3578899999999999999999999999999999999999765 56788789
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC--CCCeEEEEEe---CCEEEEEcCCcEEEEEcCCC
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWR---TSLIAWANDAGVKVYDAAND 210 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~--~~~V~~l~~~---~~~la~~~d~~i~i~d~~~~ 210 (724)
|+++.++++ |+++ +-...+.|.+|+.. ....++.. ...|.+.+.+ +.+++++.|..++.||..++
T Consensus 187 VtSlEvs~d-----G~il-Tia~gssV~Fwdak----sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 187 VTSLEVSQD-----GRIL-TIAYGSSVKFWDAK----SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred CcceeeccC-----CCEE-EEecCceeEEeccc----cccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC
Confidence 999999999 5554 44555788887654 22233332 3346666666 34566668999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
..+.... .+|-..+-++.| ++|...++| .||+|++|....++.
T Consensus 257 eEi~~~n-----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 257 EEIGSYN-----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceeeecc-----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9887631 122234778889 789999999 999999999877654
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.2e-15 Score=158.09 Aligned_cols=185 Identities=15% Similarity=0.228 Sum_probs=145.7
Q ss_pred ecCCEEEEEeCCCeEEEEecC---CC----eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---eEEEe
Q 004914 62 VAERMIALGTHAGTVHILDFL---GN----QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---KMKFD 131 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~~---~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~~~~~ 131 (724)
+++++|.+|+.||.|++|+.. +. .+..+..|++.|+++....+|+.|+|+|.|-+|++|+...+. ..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999983 21 255678899999999999999999999999999999998753 23577
Q ss_pred CCC-CeeEEEe-CCCCCCCCCCEEEEecCCCeEEEEecccC---------CccceEec-cCCCCeEEEEEe--CCEEEEE
Q 004914 132 YHR-PMKAISL-DPDYTRKMSRRFVAGGLAGHLYLNSKKWL---------GYRDQVLH-SGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 132 ~~~-~v~~v~~-~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---------~~~~~~l~-~~~~~V~~l~~~--~~~la~~ 197 (724)
.|+ .|.|++. .++ ...+|+||.|+.|.+|+..-. ......+. ++..+|.+++-+ |.+++.|
T Consensus 115 ~H~DYVkcla~~ak~-----~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKN-----NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred cccchheeeeecccC-----ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 888 9999999 565 689999999999999987521 11122222 567789999988 5566666
Q ss_pred -cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+.+++||.++++.+-.+..|... +..+.. .+|..++++ .||+|++||+....
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdN------Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDN------VRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CcccceEEeccccccceeeeeccccc------eEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 6899999999999888776655432 444444 788888888 99999999997644
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.1e-15 Score=159.89 Aligned_cols=298 Identities=17% Similarity=0.166 Sum_probs=220.1
Q ss_pred CchhhHHHHHhcccHHHHHHHHHhcCCCchh----------------------HhHHHHHHHHHHhccchHHHHHhhhhh
Q 004914 395 DAEDHIAWLLEHGWHEKALAAVEAGQGRSEL----------------------LDEVGSRYLDHLIVERKYAEAASLCPK 452 (724)
Q Consensus 395 ~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~----------------------~~~i~~~~~~~l~~~~~~~~Aa~~~~~ 452 (724)
|..|.-...++++.||||+.+.++.....+. -..|+.+-+...+.++...+|.+.|.
T Consensus 1050 Da~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi- 1128 (1666)
T KOG0985|consen 1050 DAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI- 1128 (1666)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH-
Confidence 4445556778999999999998876532111 13455555556666777777777543
Q ss_pred hhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHH-HHHcCCccHHHHHHHhhcCCCCccChHHHHHHH
Q 004914 453 LLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALV-ALATNPSFHKYLLSTVKSWPPVIYSALPVISAI 531 (724)
Q Consensus 453 ~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~-~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 531 (724)
.++++..+.+||....+.+..+.|++||.+.+.+..+...+..|. .|.+. .....+.++|.- ++.-+ ++.+
T Consensus 1129 -kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt-~rl~elE~fi~g--pN~A~----i~~v 1200 (1666)
T KOG0985|consen 1129 -KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT-NRLTELEEFIAG--PNVAN----IQQV 1200 (1666)
T ss_pred -hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh-chHHHHHHHhcC--CCchh----HHHH
Confidence 366789999999999999999999999999766665544444444 44322 122334444432 22233 3333
Q ss_pred hhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCch-hhHHHHhcC---ChHHHHHHHHHHHccChhH--HHHHh
Q 004914 532 EPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHN---LHDAIREKVVQLMLLDCKR--AVSLL 605 (724)
Q Consensus 532 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~---l~~~~~~~~~~L~~~~~~~--~~~ll 605 (724)
.++| -....|+++..+|....+|.+....++.++..+ +.+-.++.+ .|+.|...+.+--++...+ ++.++
T Consensus 1201 Gdrc----f~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1201 GDRC----FEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hHHH----hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 4444 345589999999999999999999999999977 888888887 7888887777665555555 45555
Q ss_pred hhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcchhhhHHHhhh-cCCCCHH
Q 004914 606 IQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVEL---YADYDLKMLLPFLRS-SQHYTLE 681 (724)
Q Consensus 606 ~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~L---y~~~~~~~ll~fL~~-~~~y~~~ 681 (724)
+.- -..+.++..++ ++..+ .-|-.|++..-...++++.++.|| |++|.|+|++++|+- .+..++.
T Consensus 1277 vha---deLeeli~~Yq------~rGyF--eElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNip 1345 (1666)
T KOG0985|consen 1277 VHA---DELEELIEYYQ------DRGYF--EELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIP 1345 (1666)
T ss_pred Eeh---HhHHHHHHHHH------hcCcH--HHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchH
Confidence 543 26788999888 44554 566666666666777777666665 999999999999999 6889999
Q ss_pred HHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHH
Q 004914 682 KAYEICVKRDLLREQVFILGRMGNTKHALAVIINK 716 (724)
Q Consensus 682 ~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~ 716 (724)
+++|.|++.++|.|.||||.+...|+.|...++++
T Consensus 1346 KviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h 1380 (1666)
T KOG0985|consen 1346 KVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEH 1380 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhC
Confidence 99999999999999999999999999999999986
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.7e-14 Score=134.43 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=119.3
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (724)
.|+. +++.++.|+++++||++++|+......+..-.|..++.+++|.+ ...+++|+.||.|+.+|+.++....+..|
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccC
Confidence 3554 66677888899999999999996665544456999999999987 45689999999999999999999888888
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEE-EcCCcEEEEEcCCC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAW-ANDAGVKVYDAAND 210 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~-~~d~~i~i~d~~~~ 210 (724)
. +|.|+...+. ...+++|+.|++|++|+.+- ......+. ....|.++...|+.|++ +.+..+.+||+++.
T Consensus 94 ~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 94 DEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred CCceEEEEeecc-----CCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 8 9999999987 68999999999999998862 22222222 33479999998776666 48999999999864
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.4e-14 Score=140.00 Aligned_cols=209 Identities=15% Similarity=0.147 Sum_probs=155.3
Q ss_pred CCCccceeccCCCccccCCCceEEEEe--cCCEEEEEeCCCeEEEEecCCCe---eEEEcCCccceeEEEEcCCCC-EEE
Q 004914 36 EPRLKYQRMGGSLPSLLANDAASCVAV--AERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGE-YVG 109 (724)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~s~--~~~~la~g~~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~-~l~ 109 (724)
...+.+.++......-..++.|+|+++ ....+.+++.||+++||.++|+. ++.+.--..+|.+.+|.|+|. .++
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 445666666655555555677888555 55689999999999999997765 566666677999999999999 899
Q ss_pred EEeCCCCEEEEeccCCceEEE---eCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe
Q 004914 110 SCSDDGSVVINSLFTDEKMKF---DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (724)
Q Consensus 110 s~~~Dg~v~iwd~~~~~~~~~---~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V 184 (724)
+++.....+.||+.+.++..+ .+.. .+....++|+ +++++..+..|.|.+.... .+..... ..-+|.|
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-----~~fia~~G~~G~I~lLhak-T~eli~s-~KieG~v 347 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-----SNFIAIAGNNGHIHLLHAK-TKELITS-FKIEGVV 347 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCC-----CCeEEEcccCceEEeehhh-hhhhhhe-eeeccEE
Confidence 999999999999999776544 3333 7888999999 8999999999999885432 1221221 2246789
Q ss_pred EEEEEe--CC-EEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 185 HVVKWR--TS-LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 185 ~~l~~~--~~-~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
..+.|+ +. +++++.+|.|.+||++...++..+...+.. ...+++. .++.+|++| ..|.|.|||..+.
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 999998 54 555558999999999999888776554322 1233443 578899999 7788999986654
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.9e-14 Score=134.46 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=140.0
Q ss_pred CceEEEEecCC----EEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE
Q 004914 55 DAASCVAVAER----MIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK 129 (724)
Q Consensus 55 ~~i~~~s~~~~----~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~ 129 (724)
+.|+|+.+.+. .|++|+.||.|.+|+. .-..+..+++|.+.|+.++++|.|+.-++.+.|+.++.||+-+|+...
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 56778665432 6899999999999999 445578999999999999999999999999999999999999877643
Q ss_pred -EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEE-cCCcEEEEE
Q 004914 130 -FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 130 -~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~-~d~~i~i~d 206 (724)
.+.....+.|.|+|. |.+|+.++.+ .|-+|... +......+ ..+..+.++.|. +..+++| .|+.|++||
T Consensus 164 v~~L~~~at~v~w~~~-----Gd~F~v~~~~-~i~i~q~d-~A~v~~~i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 164 VLNLKNKATLVSWSPQ-----GDHFVVSGRN-KIDIYQLD-NASVFREI-ENPKRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred eeccCCcceeeEEcCC-----CCEEEEEecc-EEEEEecc-cHhHhhhh-hccccceeeeecCCceEEEecCCceEEEec
Confidence 333335566999998 8888888876 56677654 11111111 122457777777 5566655 789999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee---cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW---QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+..+...+..+. ..+-.+.+ +.+.+|+++ .||.|+|||++...
T Consensus 236 ~ds~~~~~~~~AH~------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHE------NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cCCCccceeeecch------hheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99877776655543 33445543 345677777 99999999998753
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-14 Score=134.24 Aligned_cols=192 Identities=18% Similarity=0.195 Sum_probs=141.0
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEecCCCe---eEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC-ce---
Q 004914 59 CVAV--AERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD-EK--- 127 (724)
Q Consensus 59 ~~s~--~~~~la~g~~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~-~~--- 127 (724)
+|+. .|++||+++.||.|.||.-.+.. ......|.++|++++|.|. |-.|++++.||.|.|.+.++. .-
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 4554 68999999999999999985443 3556789999999999996 457999999999999998873 22
Q ss_pred EEEeCCC-CeeEEEeCCCCCC---------CCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeC-----
Q 004914 128 MKFDYHR-PMKAISLDPDYTR---------KMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRT----- 191 (724)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~---------~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~----- 191 (724)
.....|. .|++++|.|.-.. ..-+.|++|+.|..|++|...-.. ....++.+|.+.|+.++|.+
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 2356788 9999999996211 112569999999999999764221 23445888999999999993
Q ss_pred -CEEEEE-cCCcEEEEEcCCC--ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 192 -SLIAWA-NDAGVKVYDAAND--QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 192 -~~la~~-~d~~i~i~d~~~~--~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
..||++ .|+.+.||..+.. +-..++..+ ....+.+++| ..++.|+++ .|+.|.+|.-..
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-----f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-----FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccccccc-----CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 456666 6999999987622 111111111 1223567788 578888888 889999997543
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=143.53 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=158.2
Q ss_pred cCCCccceeccCC---CccccCCCceEEE--EecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEE
Q 004914 35 EEPRLKYQRMGGS---LPSLLANDAASCV--AVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYV 108 (724)
Q Consensus 35 ~~~~~~~~~~~~~---~~~~~~~~~i~~~--s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l 108 (724)
..|.+.++.+... ...+.-.+.+.|+ ++.|.+++.|+-.|.|++|.+ +|..+..+.+|-.+|+|+.|+-||.+|
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 3455555554432 2233344556664 457889999999999999999 777788889999999999999999999
Q ss_pred EEEeCCCCEEEEeccC----------CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe
Q 004914 109 GSCSDDGSVVINSLFT----------DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL 177 (724)
Q Consensus 109 ~s~~~Dg~v~iwd~~~----------~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l 177 (724)
+|||.||.|.+|++.. .....+..|. +|+.+...+.- ....+++++.|.++++|+.. .+.....+
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg---~~~rl~TaS~D~t~k~wdlS-~g~LLlti 214 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG---TNARLYTASEDRTIKLWDLS-LGVLLLTI 214 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---ccceEEEecCCceEEEEEec-cceeeEEE
Confidence 9999999999998643 2345678898 99999887752 14689999999999999885 34333222
Q ss_pred ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc--eE------EEecCC--CCCCCCCC--CCCceee-cCCCeEE
Q 004914 178 HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ--RI------TFIERP--RGSPRPEL--LLPHLVW-QDDTLLV 241 (724)
Q Consensus 178 ~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~--~~------~~i~~~--~~~~~~~~--~~~~l~~-~~~~~l~ 241 (724)
..+.++.+++.+ ...+.+| .+|.|.+.++..-. .. ...... ....+|.. .+.|++. .++.+|+
T Consensus 215 -~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 -TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 235678888888 4566655 78998888876332 11 000000 11223333 5777887 6899999
Q ss_pred EE-eCCeEEEEEEeeCCC
Q 004914 242 IG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 242 ~g-~d~~i~vw~~~~~~~ 258 (724)
+| .||.|.|||+.+.+.
T Consensus 294 SGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred eeCCCCCEEEEecchHHH
Confidence 99 999999999987764
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.60 E-value=2.1e-14 Score=136.26 Aligned_cols=202 Identities=14% Similarity=0.196 Sum_probs=147.3
Q ss_pred cccCC-CceEE--EEecCCEEEEEeCCCeEEEEecCCCee-EEE--cCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc
Q 004914 50 SLLAN-DAASC--VAVAERMIALGTHAGTVHILDFLGNQV-KEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 50 ~~~~~-~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~~-~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (724)
.++.+ +.|.+ |.|....|++|+.|++|++||...... +.+ -....+|.+++|+|.|.+|+.|.+..++++||+.
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 33333 55555 666778999999999999999943322 122 2244589999999999999999999999999999
Q ss_pred CCceEE----EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-C-CCCeEEEEEe--CCEE
Q 004914 124 TDEKMK----FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-G-EGPVHVVKWR--TSLI 194 (724)
Q Consensus 124 ~~~~~~----~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~-~~~V~~l~~~--~~~l 194 (724)
+-++.. -..|. .|++|.+++. ++..++|+.||.|++|+.- .++...++.. | ...|++..|. |++|
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t-----~~lYvTaSkDG~IklwDGV-S~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSST-----GSLYVTASKDGAIKLWDGV-SNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCC-----ccEEEEeccCCcEEeeccc-cHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 977653 24455 9999999999 8999999999999998764 3455555533 4 4568899998 7887
Q ss_pred EEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCCC
Q 004914 195 AWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQS 258 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~~ 258 (724)
.++ .|..+++|.+.++.++......+.. +.........| ....+++.- ..+.+--||.++...
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~t-grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTT-GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcc-cchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 777 7999999999999998876554322 22222344455 333444433 566788898887653
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.8e-14 Score=134.99 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=134.2
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCCCee
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHRPMK 137 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~~v~ 137 (724)
|++.|.++|+|+.+|.|.|||+ +....+.+.+|..+|++++||++|+.|+|+|.|..|++||+..|.+ ..+.+..||+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~ 110 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW 110 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc
Confidence 8889999999999999999999 4455578899999999999999999999999999999999998765 4678888999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC-CCC----eEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG-EGP----VHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~-~~~----V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
.+.|+|. +.+.+++.-.+..-.+-+. ...+-..+... ++. -.+..|. |++|.+| +.|.+.+|+..+
T Consensus 111 ~~q~hp~----k~n~~va~~~~~sp~vi~~--s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 111 GAQWHPR----KRNKCVATIMEESPVVIDF--SDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred eeeeccc----cCCeEEEEEecCCcEEEEe--cCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 9999997 2344444333322222221 11222233221 111 1122354 8899888 688999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
-+++..+.... ...+-++.+ ..+..+++. .|..||.|+++.-.
T Consensus 185 ~e~vas~rits-----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 185 LECVASFRITS-----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred heeeeeeeech-----heeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 88887654332 112344555 467777777 99999999987443
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.60 E-value=9.3e-15 Score=143.99 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=150.3
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-E
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-F 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~ 130 (724)
++++. +.++++.++..++|+.+++|+. +++...++.+|++.|+++.|......+++|+.|.+|+.||+.+..+.. +
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 44666 4557889999999999999999 556678899999999999998877779999999999999999876654 3
Q ss_pred eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEEcCCcEEEEEc
Q 004914 131 DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDA 207 (724)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~~d~~i~i~d~ 207 (724)
.....+..|+.++ ..+++|-.|++|++|+.+ .......+.. .|.|+++..+ | .+++++.|.++.++|+
T Consensus 300 l~~S~cnDI~~~~-------~~~~SgH~DkkvRfwD~R-s~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 300 LPGSQCNDIVCSI-------SDVISGHFDKKVRFWDIR-SADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred cccccccceEecc-------eeeeecccccceEEEecc-CCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeec
Confidence 3333666666654 478999999999999865 3344444443 4589998887 4 4555667999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
++......+........++ ...+.| +++.+++.| .||.|+||++.+++.
T Consensus 371 Rt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ccccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCceE
Confidence 9998888777665443333 455667 688888888 999999999988653
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.6e-15 Score=159.02 Aligned_cols=177 Identities=21% Similarity=0.326 Sum_probs=147.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~ 135 (724)
.+++....|+.|+.+|+|++||+ .+..++++.+|...+.++.|+|-|.+.++|+.|+.+++||.+. |....+.+|. .
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 46677889999999999999999 6666789999999999999999999999999999999999995 7777888888 8
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--CEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|.+++|+|+ |+++++|+.|..+.+|+.. .|.....+..|++.+.++.|++ -+++.+ .|+++++||+++-+.
T Consensus 157 v~~l~lsP~-----Gr~v~~g~ed~tvki~d~~-agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRLSPD-----GRWVASGGEDNTVKIWDLT-AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred eEEEeecCC-----CceeeccCCcceeeeeccc-ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 999999999 8999999999999999886 5677778888999999999984 455555 699999999998887
Q ss_pred EEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCe
Q 004914 213 ITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTY 247 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~ 247 (724)
+....... .-+.+..| +++..+.+|....
T Consensus 231 I~s~~~~~------~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET------DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc------CCceeeeecCCceeeecCchhh
Confidence 76543321 12455666 5677777773333
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=8.6e-15 Score=154.77 Aligned_cols=174 Identities=18% Similarity=0.277 Sum_probs=127.6
Q ss_pred cCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCce--EEEeCCC-Cee
Q 004914 63 AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEK--MKFDYHR-PMK 137 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~-~v~ 137 (724)
..++|++|+.||+|++||+. .....++.+...+|.++.|+|. +..++++.+.|.+.+||++.... ..+..|. +|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 46799999999999999994 4446677888889999999985 66899999999999999997433 4678888 999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEeC---CEEEEE---cCCcEEEEEcCCC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWRT---SLIAWA---NDAGVKVYDAAND 210 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~~---~~la~~---~d~~i~i~d~~~~ 210 (724)
|+.|+|+ +.+||+||.|+.|++|+.. .+...... -..-.||..+.|.+ ..||++ .|..|+|||++..
T Consensus 225 c~nwhPn-----r~~lATGGRDK~vkiWd~t-~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 225 CLNWHPN-----REWLATGGRDKMVKIWDMT-DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred EEeecCC-----CceeeecCCCccEEEEecc-CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999999 8999999999999999875 22221111 12346899999994 556655 4889999999743
Q ss_pred c-eEEEecCCCCCCCCCCCCCceeecC--CCeEEEE-eCCeE
Q 004914 211 Q-RITFIERPRGSPRPELLLPHLVWQD--DTLLVIG-WGTYI 248 (724)
Q Consensus 211 ~-~~~~i~~~~~~~~~~~~~~~l~~~~--~~~l~~g-~d~~i 248 (724)
- +..++ ..|...+..++|.. ...+.++ .|+.|
T Consensus 299 YIP~~t~------~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 299 YIPYATF------LEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred cccceee------eccCccccceeccCCCceeeEeecCccHH
Confidence 1 11122 22334566777733 3334444 44444
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=125.44 Aligned_cols=191 Identities=20% Similarity=0.297 Sum_probs=146.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC----------CC-eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC---
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL----------GN-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--- 124 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~----------~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--- 124 (724)
+++|.+++++.|..+|.|.++.++ |+ .+..+++|.++|..+.|. ..+|++|+. |.|+-|-.+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence 689999999999999999999873 11 145568999999999998 567888775 9999987653
Q ss_pred ----CceEE----Ee--CCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--
Q 004914 125 ----DEKMK----FD--YHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 125 ----~~~~~----~~--~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-- 190 (724)
++... .. .-. .|+++-+.|. .+.++.++.|+.++.|+.. +|+-..++.+|...|.++.-.
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~-----enSi~~AgGD~~~y~~dlE-~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-----ENSILFAGGDGVIYQVDLE-DGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccC-----CCcEEEecCCeEEEEEEec-CCEEEEEEcCCcceeeeeeeccc
Confidence 11111 11 112 6899999998 5666666689999999986 788888999999999999885
Q ss_pred -CCEEEEEcCCcEEEEEcCCCceEEEecCCCCC--CC--CCCCCCceeecCCCeEEEEeCCeEEEEEEeeCCCC
Q 004914 191 -TSLIAWANDAGVKVYDAANDQRITFIERPRGS--PR--PELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSN 259 (724)
Q Consensus 191 -~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~--~~--~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~ 259 (724)
++++.++.||++|+||.++++.+..++..... .+ -..++.+++ .+...++||.+..+.+|+++...+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala-~~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA-VNEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe-ccCceEEecCCCceeEEeccCCCce
Confidence 78888889999999999999999887654322 12 222233333 3678899999999999999886643
No 123
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.7e-12 Score=142.52 Aligned_cols=176 Identities=18% Similarity=0.092 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCC--ch--hhHHHHhcC-----ChHHHHHHHHHHHccChhHHHHHhhhcCCCCCh
Q 004914 544 LKEALAELYVIDGHYEKAFSLYADLMK--PY--IFDFIENHN-----LHDAIREKVVQLMLLDCKRAVSLLIQNKDLITP 614 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~~~~--~~--~~~~i~~~~-----l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~ 614 (724)
++.++.++|.+.++|+.++++|++..+ +. -|-+++.+- .-......+.++...+....++++++|... -.
T Consensus 803 ~y~Vl~hi~~k~~kyed~l~~iLe~n~ek~~~~~fvs~e~e~l~~~~~~fr~l~~i~e~fti~~~~~~rlli~hc~d-~f 881 (1206)
T KOG2079|consen 803 FYKVLFHIYKKENKYEDALSLILETNDEKEYNTDFVSIEDEILKKCPPGFRELGKITEVFTIFDLLLSRLLIEHCVD-IF 881 (1206)
T ss_pred cceeHHHHHhhhhhHHHHHHHHHHhhhhhccccceEeeehhhhccCCcchHHHHHHHhhccchHHHHHHHHHHHHHH-HH
Confidence 333778899999999999999999653 11 232333221 111144555566667778889999887421 11
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcchh--hhHHH---hhhcCCCCHHHHHHH
Q 004914 615 SEVVTQLLNARDKCDSRYFLHLYLHALFEVNP---HAGKDFHDMQVELYADYDLK--MLLPF---LRSSQHYTLEKAYEI 686 (724)
Q Consensus 615 ~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~---~~~~~~~~~lv~Ly~~~~~~--~ll~f---L~~~~~y~~~~al~~ 686 (724)
.++-..|.+.... -.+.+.-.||..++..-+ ..+....+..+|+||+|-++ .++.| ++....|+..-+|-.
T Consensus 882 a~~~~n~~re~l~-v~l~l~~k~l~Klfs~~si~neLd~~l~el~~E~~ckwm~sre~Il~f~~~v~~nag~~~~l~ll~ 960 (1206)
T KOG2079|consen 882 ADFDYNLHREILE-VKLELTQKYLDKLFSTPSINNELDKRLRELHIELNCKWMSSREMILWFNGTVLSNAGSLQILDLLN 960 (1206)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccchHHHHHHHh
Confidence 1111222221100 001111156777776544 56778999999999997544 47888 666778887777766
Q ss_pred HhcCCCchhHHHHHhccCChHHHHHHHHHHhCCcc
Q 004914 687 CVKRDLLREQVFILGRMGNTKHALAVIINKLGDIE 721 (724)
Q Consensus 687 c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~ 721 (724)
-..+...+..++++.+-.+..+|..+..++|..-+
T Consensus 961 ~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk 995 (1206)
T KOG2079|consen 961 QDSNHEARAVIHERLESFNLAVAFLLSFEELCLNK 995 (1206)
T ss_pred cChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 66678899999999999999999999888876543
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.3e-14 Score=139.96 Aligned_cols=158 Identities=21% Similarity=0.310 Sum_probs=130.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecC----------CCeeEEEcCCccceeEEEEcCCC--CEEEEEeCCCCEEEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFL----------GNQVKEFPAHTAAVNDLSFDVDG--EYVGSCSDDGSVVIN 120 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~----------~~~~~~~~~h~~~V~~l~~s~~g--~~l~s~~~Dg~v~iw 120 (724)
.+|+| |+-||.+|++|+.||.|++|.+. ..+...|..|+-+|+++.+.+.| .+++|+|.|.++++|
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence 56888 55688999999999999999762 12367889999999999988764 479999999999999
Q ss_pred eccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc-cC--------------CccceEeccCCC--
Q 004914 121 SLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-WL--------------GYRDQVLHSGEG-- 182 (724)
Q Consensus 121 d~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~~--------------~~~~~~l~~~~~-- 182 (724)
|+..+.+. ++.+..++++++++|. .+.+.+|+.+|.|.+.... |. +.....+.+|.+
T Consensus 204 dlS~g~LLlti~fp~si~av~lDpa-----e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 204 DLSLGVLLLTITFPSSIKAVALDPA-----ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EeccceeeEEEecCCcceeEEEccc-----ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 99998764 5777779999999999 8999999999999876421 11 233455667777
Q ss_pred CeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEec
Q 004914 183 PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIE 217 (724)
Q Consensus 183 ~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~ 217 (724)
+|+|++.+ |.++++| .||.|+|||+.+.++++++.
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999998 8888888 79999999999999888765
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4e-15 Score=155.98 Aligned_cols=183 Identities=16% Similarity=0.247 Sum_probs=152.4
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-CeeE
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKA 138 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~ 138 (724)
..++.+++|+.+..+-+|.. ....+..+.+|..+|.++.|+++...|+.|+.+|+|++||+..++ +.++.+|. .+.+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~s 117 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITS 117 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcce
Confidence 35678999999999999998 455566789999999999999999999999999999999999866 45788999 9999
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEE
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITF 215 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~ 215 (724)
+.|+|- +.++++|+.|+.+.+|+.+. ..+...+.+|.+.|..+.|. |.+++.+ .|..++|||...|+.+..
T Consensus 118 v~f~P~-----~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 118 VDFHPY-----GEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred eeeccc-----eEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence 999998 89999999999999998874 34556677788889999999 7899988 569999999999998887
Q ss_pred ecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 216 IERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++.+.+. +..+.+ +..-+++.| .|+++++||+++-
T Consensus 192 f~~~e~~------v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 192 FKSHEGK------VQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ccccccc------ccccccCchhhhhccCCCCceeeeecccee
Confidence 6655432 334445 345566777 8999999999844
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=4.3e-14 Score=146.76 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=148.3
Q ss_pred EEecCCEEEEEeCCCeEEEEecC-C--CeeEEEcCCccceeEEEE-cCCCCEEEEEeCCCCEEEEeccCCce---E----
Q 004914 60 VAVAERMIALGTHAGTVHILDFL-G--NQVKEFPAHTAAVNDLSF-DVDGEYVGSCSDDGSVVINSLFTDEK---M---- 128 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~-~--~~~~~~~~h~~~V~~l~~-s~~g~~l~s~~~Dg~v~iwd~~~~~~---~---- 128 (724)
.+.+|+.++++++|-+|++|+.. + ....++..|.+-|.|++. .++...+||||-|+.|.+||+.++.. .
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 44567889999999999999993 3 346778899999999999 88888999999999999999997622 1
Q ss_pred ----EEe-CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEEcC
Q 004914 129 ----KFD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWAND 199 (724)
Q Consensus 129 ----~~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~~d 199 (724)
.+. +++ +|.+++.++. |..|++|+..+.+++|+.+ .+.+...+.+|...|..+..+ | +++.+++|
T Consensus 161 ~t~~sl~sG~k~siYSLA~N~t-----~t~ivsGgtek~lr~wDpr-t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 161 VTVNSLGSGPKDSIYSLAMNQT-----GTIIVSGGTEKDLRLWDPR-TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred cccccCCCCCccceeeeecCCc-----ceEEEecCcccceEEeccc-cccceeeeeccccceEEEEEcCCCCeEeecCCC
Confidence 122 555 8999999998 8899999999999999997 567777788999999999998 5 45555689
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|+|++||+...+++.++..|... +.++.- ++=..+.+| .++.|..-|+++.
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEeeeccccceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999987766532 222222 233456677 8999999888874
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.8e-13 Score=144.45 Aligned_cols=192 Identities=19% Similarity=0.246 Sum_probs=155.0
Q ss_pred CCceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEe
Q 004914 54 NDAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFD 131 (724)
Q Consensus 54 ~~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~ 131 (724)
+..+++++..++.+++|+.+++|.++.. .+..-..+...+-++++++|+.+|+++|.||.|-.|++-+..+ .....+.
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence 3557888999999999999999999998 4443334445667899999999999999999999999999987 5567788
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--------CCCCeEEEEEe---CCEEEEEcC
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--------GEGPVHVVKWR---TSLIAWAND 199 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--------~~~~V~~l~~~---~~~la~~~d 199 (724)
+|. +|.++.|+|. +..+|+.+.||.|++|+.. ++....++.+ ....++.++|+ |.+++.+.|
T Consensus 136 gh~apVl~l~~~p~-----~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPK-----GNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred ccCCceeeeeEcCC-----CCEEEEEecCceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 888 9999999999 8999999999999999875 4433322221 13456778999 578888899
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+.|++|+..+......+...... ...+.+.| ++|.+|+++ -+|.|-|||+.+
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~s----s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSS----SKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CeEEEEccCCceeheeecccccc----cceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999988877665433211 12677899 789999999 999999999986
No 128
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.55 E-value=2e-13 Score=133.85 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=139.8
Q ss_pred EecCCEEEEE---eCCCeEEEEec--CCCe---eEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCC------
Q 004914 61 AVAERMIALG---THAGTVHILDF--LGNQ---VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTD------ 125 (724)
Q Consensus 61 s~~~~~la~g---~~dg~I~i~d~--~~~~---~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~------ 125 (724)
+.+++++|+. +..|...+.-+ .|+. ...+.+|+++|.++.|+|-. ..|||||+|.+|.||.+..+
T Consensus 41 avNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 41 AVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred ccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 3467777653 33344555444 3432 35678999999999999965 47899999999999998752
Q ss_pred --ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC
Q 004914 126 --EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND 199 (724)
Q Consensus 126 --~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d 199 (724)
.+..+.+|. .|..|+|||. ..+.+++++.|.+|.+|+.. .|.....+. |..-|.+++|+ |..++++ .|
T Consensus 121 tepvv~L~gH~rrVg~V~wHPt----A~NVLlsag~Dn~v~iWnv~-tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPT----APNVLLSAGSDNTVSIWNVG-TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred ccceEEEeecceeEEEEeeccc----chhhHhhccCCceEEEEecc-CCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 244678898 9999999998 46889999999999999987 565555555 99999999999 7777776 79
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE----eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG----WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g----~d~~i~vw~~~~~~ 257 (724)
..|||||.++++.+..-..+.+. ......| .++..+.+| .+..+-+||-..-+
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~-----k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGA-----KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCC-----CcceeEEeccCceeeeccccccccceeccCccccc
Confidence 99999999999988764333322 2445667 677777787 34458888876533
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3e-12 Score=122.03 Aligned_cols=191 Identities=20% Similarity=0.310 Sum_probs=137.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC---CC--eeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccC------C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL---GN--QVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFT------D 125 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~---~~--~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~------~ 125 (724)
.|.+.|+.+|+|+.|++|+|||.+ |+ ....++.|.++|..+.|.+ -|+.+|+|+.|++++||.-.. +
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 366689999999999999999962 22 2467889999999999975 388999999999999996521 1
Q ss_pred ----ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec-------ccCC-ccce----EeccCCCCeEEEE
Q 004914 126 ----EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-------KWLG-YRDQ----VLHSGEGPVHVVK 188 (724)
Q Consensus 126 ----~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-------~~~~-~~~~----~l~~~~~~V~~l~ 188 (724)
++.++...+ .|+.|.|.|.. -|-.+++++.||.+++|+. .|.- .... ....+..+..|+.
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~h---lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKH---LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchh---cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 133455566 99999999974 2678999999999999963 2321 1111 1123567788999
Q ss_pred Ee-----CCEEEEEcCC------cEEEEEcCCCc-eEEEecCCCCCCCCCCCCCceee-c----CCCeEEEE-eCCeEEE
Q 004914 189 WR-----TSLIAWANDA------GVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVW-Q----DDTLLVIG-WGTYIKI 250 (724)
Q Consensus 189 ~~-----~~~la~~~d~------~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~-~----~~~~l~~g-~d~~i~v 250 (724)
|+ ..+||.+.|. .+.||....+. ....+ ...+.+...+..++| + .-.+|+++ .|| |+|
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 99 3788888665 78999876433 11111 123355567888889 2 33578888 666 999
Q ss_pred EEEeeC
Q 004914 251 ASIKTN 256 (724)
Q Consensus 251 w~~~~~ 256 (724)
|+++..
T Consensus 253 ~~v~~~ 258 (361)
T KOG2445|consen 253 FKVKVA 258 (361)
T ss_pred EEEeec
Confidence 999853
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.1e-12 Score=121.99 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=145.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeC--CCCEEEEeccCCceE-EEeCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD--DGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~--Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
.++.+|..+++++.|.++++||. +|..++++..+.-.|..++|......++.++. |.+|+..++.+++.. .+.+|.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~ 100 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK 100 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC
Confidence 46778999999999999999999 78888888888888999999887777777766 889999999997765 589999
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEEcCC-cEEEEEcCC--C
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWANDA-GVKVYDAAN--D 210 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~~d~-~i~i~d~~~--~ 210 (724)
.|++++.+|- +..|++++.|++|++|+.+ ..+....+.....+|.+..-.|-++|.+..+ .|++||+++ +
T Consensus 101 ~~V~sL~~sP~-----~d~FlS~S~D~tvrLWDlR-~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 101 KRVNSLSVSPK-----DDTFLSSSLDKTVRLWDLR-VKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred ceEEEEEecCC-----CCeEEecccCCeEEeeEec-CCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 9999999999 7999999999999999987 3444444554445554333337888888544 999999984 2
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+..++.... ....-...+.| ++|+.++.+ .++.+++.|.-+|.
T Consensus 175 gPF~tf~i~~---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 175 GPFTTFSITD---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CCceeEccCC---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 3333333221 11112345677 688888888 77889999987765
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=137.08 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=141.9
Q ss_pred CceEEE--EecCCEEEEEeCCCeEEEEecCCCe--eEEEcCCc-cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-E
Q 004914 55 DAASCV--AVAERMIALGTHAGTVHILDFLGNQ--VKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-M 128 (724)
Q Consensus 55 ~~i~~~--s~~~~~la~g~~dg~I~i~d~~~~~--~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~ 128 (724)
..|+|+ +...+.+|+|-.+|.|-+|++...- ...+.++. ..|.+++|++ |..|.|.+.+|.|.-||+.+.+. .
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence 446664 4567899999999999999994332 35566654 5899999994 55688999999999999999655 4
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
.+.... +|++++.+|. +..+++|+.||.+..++..... .-...+...++.|.+++|+ +..+++| .||.|+
T Consensus 105 ~~d~~gg~IWsiai~p~-----~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPE-----NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred EecCCCcceeEEEeCCc-----cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 566666 9999999999 7999999999977665543111 1122334456899999999 4546666 688899
Q ss_pred EEEcCCCceEEEecCCCC--CCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 204 VYDAANDQRITFIERPRG--SPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~--~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+||..++..+..+...-. ..+....+.++.+-....+++| ..|+|++||...+.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 999998877663332211 1111222333333467788999 99999999987664
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.7e-13 Score=128.46 Aligned_cols=196 Identities=12% Similarity=0.156 Sum_probs=139.9
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCe-------------------------------------eEEE------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQ-------------------------------------VKEF------ 89 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~-------------------------------------~~~~------ 89 (724)
+.|+| |+.+|+.||+.+.|++|++|+..... +..+
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 44655 77799999999999999999873110 0000
Q ss_pred -----------------cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCC
Q 004914 90 -----------------PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSR 151 (724)
Q Consensus 90 -----------------~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~ 151 (724)
+-|...|-++-....+.+|+|++.|.+|.+|++.+..+.++.... .-+..+.+|+ |+
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~-----GR 241 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPD-----GR 241 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCC-----Cc
Confidence 012233444444557889999999999999999966666777777 7788899999 99
Q ss_pred EEEEecCCCeEEEEecccCC-------ccceEeccCCCCeEEEEEeC---CEEEEEcCCcEEEEEcCCC-------ceEE
Q 004914 152 RFVAGGLAGHLYLNSKKWLG-------YRDQVLHSGEGPVHVVKWRT---SLIAWANDAGVKVYDAAND-------QRIT 214 (724)
Q Consensus 152 ~l~~g~~dg~v~l~~~~~~~-------~~~~~l~~~~~~V~~l~~~~---~~la~~~d~~i~i~d~~~~-------~~~~ 214 (724)
.+++++-.-.|.+|..-+.. .+...+.+|...|.+.+|++ +.+.++.||++++||+.-. +.++
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999998999999765432 33456788999999999993 4555668999999998632 1222
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
..+.+.. ..+.-++.+.. ++++.|+++.+..++++..+++.
T Consensus 322 ~g~~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 322 EGSAPLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred cCCcchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 2212211 11222445666 78899999999999999888754
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.2e-13 Score=142.30 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=153.0
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCC--eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYHR 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~ 134 (724)
.|+.++|++|++++.||.|++|+.... ....+..+...|.+++.. +++|++|+.+++|.+|.+.++.... +..-.
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFT 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeee
Confidence 489999999999999999999998433 233444477888877665 5599999999999999999866542 22223
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~ 210 (724)
|+++++++.+ |.+++.|+.|-.|++.+.. +.....++.+|+++|.++.|+ +.++|++ .||.|++|++.++
T Consensus 97 lp~r~~~v~g~-----g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 97 LPIRDLAVSGS-----GKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred ccceEEEEecC-----CcEEEeecCceeEEEEecc-ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 9999999999 8999999999999998775 677888899999999999999 7899988 6999999999999
Q ss_pred ceEEEecCCCCC--CCCCCCCCceee-cC-CCeEEEEeCCeEEEEEEeeCCC
Q 004914 211 QRITFIERPRGS--PRPELLLPHLVW-QD-DTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 211 ~~~~~i~~~~~~--~~~~~~~~~l~~-~~-~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
.+..++..-... ......++.++| ++ +.+++.+.++.|++|+...-..
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 887766543211 112344667899 44 5666677999999998876543
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.52 E-value=3.5e-13 Score=143.80 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=153.4
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-CCeeEEE---cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEe
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEF---PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~---~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (724)
..|+++.|++.++|++.|.|-+|+++ |-....+ .+|.++|++++.+.-++.++|++.+|.++.||..++... .+.
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 44688899999999999999999995 4445566 579999999999999999999999999999999886644 355
Q ss_pred CCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
...++.++..+.. +..++.+..|-.|++++.. .....+.+.+|.+.|+.++|+ |++++++ .|++|++||+.
T Consensus 533 l~~~~~~iv~hr~-----s~l~a~~~ddf~I~vvD~~-t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 533 LGSSITGIVYHRV-----SDLLAIALDDFSIRVVDVV-TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred cCCCcceeeeeeh-----hhhhhhhcCceeEEEEEch-hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 5558888888887 6889999999999998874 445667788899999999999 8999888 69999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC-CeEEEEEEe
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG-TYIKIASIK 254 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d-~~i~vw~~~ 254 (724)
++.++..+.... ...++.+ +++.+|++. .| .-|++|.-+
T Consensus 607 t~~lID~~~vd~-------~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 607 TGTLIDGLLVDS-------PCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CcceeeeEecCC-------cceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999988654443 2456777 789999999 55 569999644
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.2e-12 Score=117.23 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=139.4
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe------eEEEcCCccceeEEEEcC----CCCEEEEEeC-CCCEEEEeccCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ------VKEFPAHTAAVNDLSFDV----DGEYVGSCSD-DGSVVINSLFTD 125 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~------~~~~~~h~~~V~~l~~s~----~g~~l~s~~~-Dg~v~iwd~~~~ 125 (724)
.+||+|+|.+||+|+.|.+|++..++... -.++.-|.+.|.+++|-. .|..+++++. |..|++-|..+|
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 34599999999999999999998763211 246788999999999954 3556777664 677888888776
Q ss_pred ce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec----cC---CCCeEEEEEe--CCEE
Q 004914 126 EK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH----SG---EGPVHVVKWR--TSLI 194 (724)
Q Consensus 126 ~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~----~~---~~~V~~l~~~--~~~l 194 (724)
+- ..+.+|. -|.++- +-+ +-.|++|+.|.+|++|+.+.. ....++. .. .+.|.+++.. |+++
T Consensus 174 ~~~~a~sghtghilaly-swn-----~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY-SWN-----GAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred CcceeecCCcccEEEEE-Eec-----CcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 54 4678888 666552 223 579999999999999998743 3333332 21 2567788877 7999
Q ss_pred EEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 195 AWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+++ .|.+..+||++.+..+..+..+.. -+.++.| +...++++| .|..|++-|+...
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~phsa------dir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFHPHSA------DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeCCCcc------ceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999 699999999999999987655543 3667888 455677777 8999999998654
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=3.4e-13 Score=135.65 Aligned_cols=185 Identities=16% Similarity=0.256 Sum_probs=145.5
Q ss_pred cCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC--CeeE
Q 004914 63 AERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR--PMKA 138 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~--~v~~ 138 (724)
...++++|+..|.|+|||+..+.+ +.+++|...|+++.++....+||+++..|.|.|..+.++.. ..+.... .|.-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 456899999999999999976554 67789999999999999999999999999999999998654 3455543 7789
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CEEE-EEcCCcEEEEEcCCCceEE
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIA-WANDAGVKVYDAANDQRIT 214 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la-~~~d~~i~i~d~~~~~~~~ 214 (724)
+.++|. ...++.+++.+|.|.+|+..-..........|..|..+|+|++ .+++ +|.|..|.+||.++.....
T Consensus 170 l~ys~s----kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 170 LRYSPS----KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eecccc----cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 999998 3457778899999999988522223333456899999999993 3444 4479999999999776655
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.+.... ....++| .+|.+|+.| ..|.|..||++....
T Consensus 246 ~l~y~~-------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 246 RLTYSH-------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eeeecC-------CcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 443221 3456888 788999999 899999999987553
No 137
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.51 E-value=1e-13 Score=136.72 Aligned_cols=187 Identities=14% Similarity=0.186 Sum_probs=145.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe---eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~ 132 (724)
.+-|-++...|++|+.|..|++|+..|.. +.++.+..++|+++.|++++.++++++.|+.+++|++..... .++.+
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG 259 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG 259 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc
Confidence 34577777899999999999999996554 567788889999999999999999999999999999998655 57899
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~ 210 (724)
|. .|+++.|.-. ...+++|+.|.++++|+.. .....+++.. ...+..|..++..++++ .|+.|++||.++.
T Consensus 260 HtdkVt~ak~~~~-----~~~vVsgs~DRtiK~WDl~-k~~C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 260 HTDKVTAAKFKLS-----HSRVVSGSADRTIKLWDLQ-KAYCSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccceeeehhhcc-----ccceeeccccchhhhhhhh-hhheeccccc-cccccceEecceeeeecccccceEEEeccCC
Confidence 99 9999999877 4459999999999999875 2333332221 22344555555566666 7999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEE-EeCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVI-GWGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g~d~~i~vw~~~~~~ 257 (724)
.....++.++ .+.++.. .++..+.+ +.|+++.+.|+++..
T Consensus 333 ~~~~sv~~gg-------~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 333 DKTRSVPLGG-------RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ceeeEeecCc-------ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 8888776554 3555555 34554544 499999999998754
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.51 E-value=1.2e-13 Score=138.89 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=146.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCCCe
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHRPM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~~v 136 (724)
+++||.+...+++.||.|.|||+ +...++.|++|++.+.||.++++|..|-||+-|.+|+.||++.+. +....+.+.|
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 47889999999999999999999 555679999999999999999999999999999999999999854 4556666699
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRI 213 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~ 213 (724)
.++..+|. +.++++|-.++.+-+-.. .+...-.++.|++.|.++.|. |+++++. .|+-+..|...-|..+
T Consensus 596 fSLg~cP~-----~dWlavGMens~vevlh~--skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 596 FSLGYCPT-----GDWLAVGMENSNVEVLHT--SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred eecccCCC-----ccceeeecccCcEEEEec--CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 99999999 899999999998877544 344555677899999999998 8877765 7999999999888777
Q ss_pred EEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEE
Q 004914 214 TFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~ 253 (724)
...+... ....|.++ .+++++++| .+..-.||.+
T Consensus 669 FqskE~S-----sVlsCDIS-~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKESS-----SVLSCDIS-FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccccC-----cceeeeec-cCceEEEecCCCcceEEEEE
Confidence 6533221 11123333 477888888 5557777765
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.50 E-value=1e-12 Score=124.92 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=129.0
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCC--EEEEEeCCCCEEEEeccCCc-e-------
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGE--YVGSCSDDGSVVINSLFTDE-K------- 127 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~--~l~s~~~Dg~v~iwd~~~~~-~------- 127 (724)
+||+-+|..+++|+.|+.+++||+...++..+..|.++|..+.|-+... .|+|||.|.+++.||.+... +
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 4588899999999999999999997667888999999999999987766 79999999999999987632 0
Q ss_pred ---------------------EEEe-------------CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-C
Q 004914 128 ---------------------MKFD-------------YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-G 171 (724)
Q Consensus 128 ---------------------~~~~-------------~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~ 171 (724)
..++ .-. .++||+..++ ...++.|+-.|.+.+...+-. .
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d-----~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD-----KDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec-----CCceEeeeecceEEEEecCCCCc
Confidence 0110 011 5678888887 567799999999988765421 1
Q ss_pred ccceEeccCC---------CCeEEEEEe---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCC
Q 004914 172 YRDQVLHSGE---------GPVHVVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDT 238 (724)
Q Consensus 172 ~~~~~l~~~~---------~~V~~l~~~---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~ 238 (724)
....+++.|. -.|.+|+|+ |.++..|+||++.+||-.....+...+. +...+++.+| .+|.
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~------~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET------HPQPITCCSFNRNGS 306 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc------CCCccceeEecCCCC
Confidence 3334444443 146788999 5667777999999999887777665333 3334666666 5666
Q ss_pred eEEEE
Q 004914 239 LLVIG 243 (724)
Q Consensus 239 ~l~~g 243 (724)
+++-+
T Consensus 307 ifaYA 311 (347)
T KOG0647|consen 307 IFAYA 311 (347)
T ss_pred EEEEE
Confidence 65544
No 140
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.6e-12 Score=125.54 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=157.1
Q ss_pred CEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCC-ce--EEEeCCC--Ce
Q 004914 65 RMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTD-EK--MKFDYHR--PM 136 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~-~~--~~~~~~~--~v 136 (724)
+.+|+|.++|.|++||. +|+.+..|++|...++.+.|.. .+..+.||+.||+|++||+++. +. ..+..+. +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 67999999999999999 7788899999999999999977 4667999999999999999983 33 2334444 77
Q ss_pred eEEEeCCCCCCCCCCEEEEec----CCCeEEEEecccCCccc-eEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEc
Q 004914 137 KAISLDPDYTRKMSRRFVAGG----LAGHLYLNSKKWLGYRD-QVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~----~dg~v~l~~~~~~~~~~-~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~ 207 (724)
.|++.... .+.+++|+ .+-.+.+|+.+-..... .....|..-|+++.|+ +++++++ .||-|.+||+
T Consensus 121 ~~ld~nck-----~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCK-----KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCc-----CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 77777656 68888885 45578899876333323 3345688999999999 5788777 6999999998
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCC--CeEEEEeCCeEEEEEEeeCCCCCCCCccccCCC-eEEEEEEEeeece
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDD--TLLVIGWGTYIKIASIKTNQSNVANGTYRHVGM-NQVDIVASFQTSY 283 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~--~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 283 (724)
.....-..+ .....+...+.++.| .++ +..+....++..+|++..+........ |. ...........++
T Consensus 196 ~~d~EeDaL---~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~----~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 196 KKDNEEDAL---LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN----PDVSADDLRKEDNCDY 268 (376)
T ss_pred CCCcchhhH---HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC----ccchhhhHHhhhhhhh
Confidence 754211000 001223445778889 444 444444899999999998774433222 21 1123344566688
Q ss_pred EEEeeeecCCceEEEEe
Q 004914 284 YISGIAPFGDCLVVLAY 300 (724)
Q Consensus 284 ~i~gi~~~~~~l~~l~~ 300 (724)
+|-+.++-+..+..++.
T Consensus 269 ~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 269 VINEHSPGDKDTCALAG 285 (376)
T ss_pred eeecccCCCcceEEEec
Confidence 88888887755555543
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=8.1e-12 Score=138.53 Aligned_cols=190 Identities=19% Similarity=0.222 Sum_probs=136.2
Q ss_pred EEEecCC----EEEEEeCCCeEEEEecCC----Ce---eEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCC-
Q 004914 59 CVAVAER----MIALGTHAGTVHILDFLG----NQ---VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD- 125 (724)
Q Consensus 59 ~~s~~~~----~la~g~~dg~I~i~d~~~----~~---~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~- 125 (724)
.|+..|. .||.|..||.|.+||... .. +.+...|++.|..+.|++.+. .+|||+.||.|.|||+.+-
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 5666443 599999999999999832 22 456778999999999999766 9999999999999999872
Q ss_pred ceEEEe---CCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC--CCCeEEEEEeC----CEEEE
Q 004914 126 EKMKFD---YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWRT----SLIAW 196 (724)
Q Consensus 126 ~~~~~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~--~~~V~~l~~~~----~~la~ 196 (724)
...+.. ....|.+++|+.. -.+.|++|+.+|.+.+|+.+-. +....+..+ ...+..+.|++ ++++.
T Consensus 151 tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 151 TPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred CCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeee
Confidence 223332 2228999999887 3688999999999999998732 223223222 34578899993 44544
Q ss_pred E-cCC--cEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 197 A-NDA--GVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 197 ~-~d~--~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+ .|+ .|.+||++. ....+.+..| ..-+.++.| .|..+|+++ .|+.|.+|+..++...
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H------~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGH------QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhccc------ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 4 333 599999883 3344443333 334678889 455666655 9999999999886644
No 142
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=2.6e-13 Score=133.66 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=115.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCc-cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v 136 (724)
||.|||..+++|+.|++|..||++|+....+++-. ..|.++++++||+++++.+.|..|++++..+.... ....+.+|
T Consensus 319 ~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 319 AWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred EEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 59999999999999999999999999877766643 46899999999999999989998888886653221 11112233
Q ss_pred eEEEeCC----------------------------------------CCCCCCCCEEEEecCCCeEEEEecccCCccceE
Q 004914 137 KAISLDP----------------------------------------DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV 176 (724)
Q Consensus 137 ~~v~~~p----------------------------------------~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~ 176 (724)
+++.++. .|...+...+++|+.|+.|++|.+. .|....+
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~-sgkll~~ 477 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI-SGKLLAV 477 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc-CCceeEe
Confidence 3333222 1111234789999999999999986 7888999
Q ss_pred eccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcC
Q 004914 177 LHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 177 l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~ 208 (724)
+.+|...|.+++|+ +.++|++ .||+||||...
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999 4677777 68999999875
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=124.91 Aligned_cols=183 Identities=14% Similarity=0.220 Sum_probs=143.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC---C------ceEEE
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT---D------EKMKF 130 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~---~------~~~~~ 130 (724)
++-++++|++++.|..|.+|++.|+.+..+......-+..+.||+|+++++++.-..|++|.+-= | .+..+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 44467899999999999999999999888877666677788999999999999999999998632 2 24567
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC---CccceEec-------c-CCCCeEEEEEe--CCEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL---GYRDQVLH-------S-GEGPVHVVKWR--TSLIAW 196 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---~~~~~~l~-------~-~~~~V~~l~~~--~~~la~ 196 (724)
.+|+ .|...+|+|+ +..+++.+.||++++|+.+.. +.-..++. . ...|+ .+..+ |+.+|.
T Consensus 275 kGH~saV~~~aFsn~-----S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNS-----STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAV 348 (420)
T ss_pred ccchhheeeeeeCCC-----cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEe
Confidence 8999 9999999999 899999999999999975421 11111221 1 22344 55555 799999
Q ss_pred EcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEE
Q 004914 197 ANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASI 253 (724)
Q Consensus 197 ~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~ 253 (724)
+....+.+|..++|+....++.. |...+.+++| ++|+.++++.|..++++.-
T Consensus 349 s~gs~l~~~~se~g~~~~~~e~~-----h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYPELEDI-----HSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred ecCCceEEEEcccCccchhHHHh-----hcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 98899999999988766554332 3446889999 7899999999999999853
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=1.9e-13 Score=132.61 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=130.1
Q ss_pred eEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEE-EeCCCCeeEEEeCCCCCCCCCC
Q 004914 75 TVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSR 151 (724)
Q Consensus 75 ~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~ 151 (724)
.|.|||. ...+++.+.-....|.++.|+|..+ .|++|+.|+.|.+||++.+...+ +...-.-+.|+|+|. +-
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe-----af 242 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPE-----AF 242 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcc-----cc
Confidence 4666666 3444566666667889999999766 57788899999999999866543 333336788999998 78
Q ss_pred EEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCC
Q 004914 152 RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELL 228 (724)
Q Consensus 152 ~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~ 228 (724)
.|++|+.|..++.++.+.......+..+|.+.|..+.|+ |+ +++++-|.+|+||.++.+......... --..
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~ 317 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQH 317 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-----hhhe
Confidence 999999999999999987778888888999999999999 55 444557999999999866443221110 0113
Q ss_pred CCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 229 LPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 229 ~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+.++.| .|.+++++| .|+.|++|..+.
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeecch
Confidence 668889 688899999 778899998765
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.2e-13 Score=152.77 Aligned_cols=203 Identities=14% Similarity=0.211 Sum_probs=152.3
Q ss_pred ccceeccCCCccccCCCceEEEEec-CCEEEEEeCCCeEEEEecCCCee-EE--EcCCccceeEEEEcCCCC-EEEEEeC
Q 004914 39 LKYQRMGGSLPSLLANDAASCVAVA-ERMIALGTHAGTVHILDFLGNQV-KE--FPAHTAAVNDLSFDVDGE-YVGSCSD 113 (724)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~i~~~s~~-~~~la~g~~dg~I~i~d~~~~~~-~~--~~~h~~~V~~l~~s~~g~-~l~s~~~ 113 (724)
..+..|+|.+..+ .|++. ++.+|+|+.+|.|.|||++.-.. .. -....+.|.+++|+..-. .|+|++.
T Consensus 110 a~~~~h~G~V~gL-------DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGL-------DFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred hhhcccCCceeee-------eccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence 3444555555443 56664 56999999999999999954221 11 122456899999997654 5789999
Q ss_pred CCCEEEEeccCCc-eEEEeCCC---CeeEEEeCCCCCCCCCCEEEEecCCC---eEEEEecccCCccceEeccCCCCeEE
Q 004914 114 DGSVVINSLFTDE-KMKFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKKWLGYRDQVLHSGEGPVHV 186 (724)
Q Consensus 114 Dg~v~iwd~~~~~-~~~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~~~~~~~~~l~~~~~~V~~ 186 (724)
+|.+.|||++.++ +..+..+. .+..++|||+ ....+++++.|. .|.+|+.++.....+++.+|...|.+
T Consensus 183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~----~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD----HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS 258 (1049)
T ss_pred CCCceeccccCCCcccccccCCCccceeeeeeCCC----CceeeeeecCCCCCceeEeecccccCCchhhhcccccceee
Confidence 9999999999854 45554444 5889999999 345566655443 58899999888888999999999999
Q ss_pred EEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 187 VKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 187 l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+.|+ ..+++++ .|+.|.+|+..+++.+..++.. ..+...+.| .+...++++ .+|.|.|+.+.....
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC------CcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 9999 3566655 7999999999999999886553 346778888 355566666 999999999987653
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.3e-12 Score=119.84 Aligned_cols=164 Identities=18% Similarity=0.283 Sum_probs=120.6
Q ss_pred cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--Cc---eEEEeCCC-CeeEEEe-CCCCCCCCCCEEEEecCCCeE
Q 004914 90 PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DE---KMKFDYHR-PMKAISL-DPDYTRKMSRRFVAGGLAGHL 162 (724)
Q Consensus 90 ~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~---~~~~~~~~-~v~~v~~-~p~~~~~~~~~l~~g~~dg~v 162 (724)
.+|.+-|++++|++-|+++|+|+.|++|+|||..+ +. ......|. .|..|.| +|.| |+.+++++.|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf----GqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF----GQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc----cceEEEEecCCce
Confidence 46889999999999999999999999999999755 22 22467788 9999999 6777 8999999999999
Q ss_pred EEEecccC---C-----ccceEeccCCCCeEEEEEe----CCEEEEE-cCCcEEEEEcCCCceEEEecCCCC-------C
Q 004914 163 YLNSKKWL---G-----YRDQVLHSGEGPVHVVKWR----TSLIAWA-NDAGVKVYDAANDQRITFIERPRG-------S 222 (724)
Q Consensus 163 ~l~~~~~~---~-----~~~~~l~~~~~~V~~l~~~----~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~-------~ 222 (724)
.+|.-.-. . .+.+++....+.|+.+.|. |-.+|++ .||.+|||+.-.-..+..+..... .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99964211 1 2345566678899999999 5566666 799999998764433332221111 1
Q ss_pred CCCCCCCCceeec----CCCeEEEEeCC------eEEEEEEeeCC
Q 004914 223 PRPELLLPHLVWQ----DDTLLVIGWGT------YIKIASIKTNQ 257 (724)
Q Consensus 223 ~~~~~~~~~l~~~----~~~~l~~g~d~------~i~vw~~~~~~ 257 (724)
..+.....|++|. ....+++|.+. .++||....+.
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 2234456678894 35689999776 79999876643
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.4e-11 Score=129.21 Aligned_cols=210 Identities=16% Similarity=0.146 Sum_probs=150.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE---EeCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---FDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~~~ 134 (724)
||+ .+..|.+.+.+|+|.-||+ ++++........++|++++.+|.++.++.|++||.+..++...+.+.. +...+
T Consensus 76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred EEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 566 4667778889999999999 788888888889999999999999999999999977777776666542 33333
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-------c-CCCCeEEEEEe-CCEEEEE-cCCcEE
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-------S-GEGPVHVVKWR-TSLIAWA-NDAGVK 203 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-------~-~~~~V~~l~~~-~~~la~~-~d~~i~ 203 (724)
.|.+++|+|+ +..+++|+.||.|++|+.. .+....... . ...-|+++.|- ...|+++ +.|+|.
T Consensus 155 sRvLslsw~~~-----~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 155 SRVLSLSWNPT-----GTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVT 228 (691)
T ss_pred ceEEEEEecCC-----ccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEE
Confidence 8999999999 7889999999999999874 333222111 1 12234555554 6677777 899999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeee
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQT 281 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (724)
+||...+..+.....+.. -+.+++- .++..+.++ -|+.|.-+...++.+.......+..+.+.+.....++.
T Consensus 229 FWd~~~gTLiqS~~~h~a------dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDA------DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred EEcccCcchhhhhhhhhc------ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 999999988776444432 2455555 444555555 89998888887776543344455556666655555544
No 148
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=131.25 Aligned_cols=210 Identities=16% Similarity=0.145 Sum_probs=144.4
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-------------------
Q 004914 65 RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD------------------- 125 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~------------------- 125 (724)
..++++++||.+.+.+..++.-+.+.+|.+.|.+-.|+|+|.-|+|+|+||.|++|+-.+-
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 4788999999999999999888889999999999999999999999999999999984321
Q ss_pred ----------------------ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCC
Q 004914 126 ----------------------EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG 182 (724)
Q Consensus 126 ----------------------~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~ 182 (724)
++.++..|. -|.++.|+|. ++.+++|+.|-..++|+. .|.....-..|+-
T Consensus 156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-----s~lI~sgGED~kfKvWD~--~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-----SNIIASGGEDFRFKIWDA--QGANLFTSAAEEY 228 (737)
T ss_pred CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcc-----ccceeecCCceeEEeecc--cCcccccCChhcc
Confidence 022345566 7778888887 789999999999999876 2555555566889
Q ss_pred CeEEEEEeC-CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 183 PVHVVKWRT-SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 183 ~V~~l~~~~-~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+|++++|++ ...+.++-++.|+=..+.| .+..++| .+|..+++| ..|.+.+-.+-..+..
T Consensus 229 ~ITSva~npd~~~~v~S~nt~R~~~p~~G-----------------SifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~ 291 (737)
T KOG1524|consen 229 AITSVAFNPEKDYLLWSYNTARFSSPRVG-----------------SIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV 291 (737)
T ss_pred ceeeeeeccccceeeeeeeeeeecCCCcc-----------------ceEEEEEcCCCceeeccccCceEEEeeeehhhhh
Confidence 999999995 4444444455552222222 3567889 789999999 6777665555444333
Q ss_pred CCCCccccCCCeEEEEEE-------EeeeceEEEeeeecC-CceEEEE
Q 004914 260 VANGTYRHVGMNQVDIVA-------SFQTSYYISGIAPFG-DCLVVLA 299 (724)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~-------~~~~~~~i~gi~~~~-~~l~~l~ 299 (724)
..+......+.+.+++.. .++.+..+.+++ ++ .++++.+
T Consensus 292 ~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s-L~Y~hLvvaT 338 (737)
T KOG1524|consen 292 SGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS-LGYGHLVVAT 338 (737)
T ss_pred hccceeEeeccceEEeehhhhhHHHHhhCccceeeee-eceeEEEEEe
Confidence 333222223444444332 233344555554 33 5555544
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.47 E-value=3.4e-13 Score=129.43 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=139.4
Q ss_pred CEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCceEE----EeCCC-Cee
Q 004914 65 RMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKMK----FDYHR-PMK 137 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~~----~~~~~-~v~ 137 (724)
-++|+|+.-|.|+|.|. .++....+.+|..+|+.+.+.|+. ++++|||.|..|++|++++..+.. +.+|+ .|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 38999999999999999 566678899999999999999976 689999999999999999987654 36788 999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecc-------------cCCccc--------eEe------ccCCCCeEEEEEe
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-------------WLGYRD--------QVL------HSGEGPVHVVKWR 190 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-------------~~~~~~--------~~l------~~~~~~V~~l~~~ 190 (724)
++.|+++ +..+++++.|..+.+|... |...+. ..+ .-|..+|-|+.|-
T Consensus 186 SvD~~~~-----gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 186 SVDFSLD-----GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred EEEEcCC-----CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999 8999999999999999643 111000 111 1267788888888
Q ss_pred CCEEEEE-cCCcEEEEEc-CCCceEEEecCCCCCC---CCCCCCCc----eee---cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 191 TSLIAWA-NDAGVKVYDA-ANDQRITFIERPRGSP---RPELLLPH----LVW---QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~-~~~~~~~~i~~~~~~~---~~~~~~~~----l~~---~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|+++.+- .++.|..|.. .-++.+..+.++.... +.-.+..+ +.| .-.+.|+.| ..|.|++||++...
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 8877765 5889999987 3333333332332110 00011111 222 235678888 89999999998876
Q ss_pred CC
Q 004914 258 SN 259 (724)
Q Consensus 258 ~~ 259 (724)
+.
T Consensus 341 p~ 342 (385)
T KOG1034|consen 341 PP 342 (385)
T ss_pred Cc
Confidence 53
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=2e-12 Score=135.55 Aligned_cols=203 Identities=17% Similarity=0.235 Sum_probs=142.3
Q ss_pred CCccccCC-CceEE--EEecCCEEEEEeCC-----CeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCE
Q 004914 47 SLPSLLAN-DAASC--VAVAERMIALGTHA-----GTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSV 117 (724)
Q Consensus 47 ~~~~~~~~-~~i~~--~s~~~~~la~g~~d-----g~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v 117 (724)
.+..++.+ -.++| ++|+|+++|+++.. -.|++|+... ..++.+.+|+-.|+.+.|||||++|+++|.|.++
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 34445554 33555 66779999999764 3689999844 4456799999999999999999999999999999
Q ss_pred EEEeccCCceE-----EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccc-e-EeccCCCCeEEEE
Q 004914 118 VINSLFTDEKM-----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRD-Q-VLHSGEGPVHVVK 188 (724)
Q Consensus 118 ~iwd~~~~~~~-----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~-~-~l~~~~~~V~~l~ 188 (724)
.+|........ ..+.|+ -|++..|+|+ +.+|++++.|.+|.+|...-.. ... . ....+..+|++++
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd-----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD-----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred EeeeeecccchhhhhccccccceEEEEcccCcc-----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 99998653322 246677 8999999999 7889999999999999764211 111 1 2234678899999
Q ss_pred Ee-------CCEEEEE-cCCcEEEEEcCC-CceE--EEec---CCCCCCCCCCCCCceeecC-----------CCeEEEE
Q 004914 189 WR-------TSLIAWA-NDAGVKVYDAAN-DQRI--TFIE---RPRGSPRPELLLPHLVWQD-----------DTLLVIG 243 (724)
Q Consensus 189 ~~-------~~~la~~-~d~~i~i~d~~~-~~~~--~~i~---~~~~~~~~~~~~~~l~~~~-----------~~~l~~g 243 (724)
|. +.+++.| ..|.|.+|.... .+.. .... .-.....+...+..+.|.+ ...|++|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~ 751 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVG 751 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeee
Confidence 98 2477888 688999998651 1111 1111 1112334555566777741 1245666
Q ss_pred -eCCeEEEEEEe
Q 004914 244 -WGTYIKIASIK 254 (724)
Q Consensus 244 -~d~~i~vw~~~ 254 (724)
.|.++|++++.
T Consensus 752 g~D~~vri~nv~ 763 (764)
T KOG1063|consen 752 GDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeecc
Confidence 88889998864
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=130.86 Aligned_cols=187 Identities=11% Similarity=0.203 Sum_probs=145.8
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC--
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-- 134 (724)
.+|+++++|++.+..|.|++... ++..+..++ -.+.|.+++|+.+|+.|++++.+|.|.+||++...+. ++....
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 46789999999999999999988 455566654 5578999999999999999999999999999997665 444433
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc--CC---ccceEeccCCCCeEEEEEe--CCEEEEE---cCCcEEE
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW--LG---YRDQVLHSGEGPVHVVKWR--TSLIAWA---NDAGVKV 204 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~--~~---~~~~~l~~~~~~V~~l~~~--~~~la~~---~d~~i~i 204 (724)
.-++++.+++ +.+||+|+..|.|.+|+..- .+ ++...+..-...|+++.|+ ++++|.+ .+..+|+
T Consensus 389 ~gts~~~S~n-----g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 389 HGTSLCISLN-----GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred ceeeeeecCC-----CceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 4566777787 88999999999999997431 11 2333444455679999999 5777765 3678999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEe
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
-.+.+-.....++.+.... ..+.|+.| +.+..+++| .+|.+.+|.+.
T Consensus 464 VHvPS~TVFsNfP~~n~~v---g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKV---GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCCCcc---cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9998877777766664433 35788999 668999999 88999999874
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.45 E-value=8e-13 Score=138.34 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=143.8
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC---CCCEEEEEeCCCCEEEEeccCC--ceEEE
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV---DGEYVGSCSDDGSVVINSLFTD--EKMKF 130 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~~~Dg~v~iwd~~~~--~~~~~ 130 (724)
..|++|+|+.||+|...|.++++++ +......+.+|...|.|+.++. ..++|++++.|.-|.|+|.... .+.++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 4579999999999999999999999 4455667789999999999985 3467999999999999997531 11122
Q ss_pred eCCC--------------------------------------------------CeeEEEeCCCCCCCCCCEEEEecCCC
Q 004914 131 DYHR--------------------------------------------------PMKAISLDPDYTRKMSRRFVAGGLAG 160 (724)
Q Consensus 131 ~~~~--------------------------------------------------~v~~v~~~p~~~~~~~~~l~~g~~dg 160 (724)
..|. .+..++..|. .+++++++.|.
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-----~k~v~t~cQDr 618 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT-----SKLVVTVCQDR 618 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC-----cceEEEEeccc
Confidence 2222 4455666666 58889999999
Q ss_pred eEEEEecccCCccceEecc---CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee
Q 004914 161 HLYLNSKKWLGYRDQVLHS---GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (724)
Q Consensus 161 ~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (724)
.|++|+.. .++..+.+++ ++|..-.+... |.+++++ +|.++.++|..+|+++.....+. ..+..+.|
T Consensus 619 nirif~i~-sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs------E~VTG~kF 691 (1080)
T KOG1408|consen 619 NIRIFDIE-SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS------EAVTGVKF 691 (1080)
T ss_pred ceEEEecc-ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc------hheeeeee
Confidence 99999875 5677777765 45655556555 7899988 89999999999999998754443 45777888
Q ss_pred -cCCCeEEEE-eCCeEEEEEEee
Q 004914 235 -QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 235 -~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
++-+.|++. .||+|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 555666666 999999999853
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.44 E-value=3.7e-12 Score=125.10 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=133.0
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEec-CC-------CeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCceE
Q 004914 59 CVAV-AERMIALGTHAGTVHILDF-LG-------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~-~~-------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.|+| +...||+|+.|.+|.||.+ .+ ..+..+.+|...|..+.|+|.- +.|+|+|.|.+|.+||+.+++..
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal 167 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL 167 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence 4887 5679999999999999998 22 2267789999999999999975 57899999999999999998754
Q ss_pred -EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCC--CeEEEEEe-CCEEEEE----cC
Q 004914 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG--PVHVVKWR-TSLIAWA----ND 199 (724)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~--~V~~l~~~-~~~la~~----~d 199 (724)
++. |. .|.++.|+-+ |.++++.+.|..|++|+.+ .+.....-..|.| +...+-.. |.++.++ ++
T Consensus 168 i~l~-hpd~i~S~sfn~d-----Gs~l~TtckDKkvRv~dpr-~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRD-----GSLLCTTCKDKKVRVIDPR-RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred eecC-CCCeEEEEEeccC-----CceeeeecccceeEEEcCC-CCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 555 77 9999999999 8999999999999999886 4444444444543 33333333 6766665 47
Q ss_pred CcEEEEEcCCC-ceEE--EecCCCCCCCCCCCCCceee-cCC-CeEEEE-eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAAND-QRIT--FIERPRGSPRPELLLPHLVW-QDD-TLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~-~~~~--~i~~~~~~~~~~~~~~~l~~-~~~-~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+-+||...- +++. .+....+ +.--.| .+. -..++| .|+.||.|.+....
T Consensus 241 Rq~aLwdp~nl~eP~~~~elDtSnG-------vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELDTSNG-------VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cceeccCcccccCcceeEEeccCCc-------eEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 78999997642 2222 2222211 111112 233 345677 89999999997643
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.6e-12 Score=133.36 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=137.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecC---------CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-----
Q 004914 60 VAVAERMIALGTHAGTVHILDFL---------GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD----- 125 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~---------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~----- 125 (724)
+.+....|++++.+|++.+|++. -.++.+|++|.++|.|+++.+++.++.+||.||+|+.|++...
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d 381 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD 381 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc
Confidence 44556789999999999999982 1236789999999999999999999999999999999966521
Q ss_pred --c----eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-----C----------------------
Q 004914 126 --E----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-----G---------------------- 171 (724)
Q Consensus 126 --~----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-----~---------------------- 171 (724)
. ...+.+|. .|+.+++|+. ...+++++.||+++.|...-. +
T Consensus 382 s~dp~vl~~~l~Ghtdavw~l~~s~~-----~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 382 SYDPSVLSGTLLGHTDAVWLLALSST-----KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred ccCcchhccceeccccceeeeeeccc-----ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhh
Confidence 1 12567888 9999999998 678999999999999952100 0
Q ss_pred ----------------ccceEeccC-------CCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCC
Q 004914 172 ----------------YRDQVLHSG-------EGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRP 225 (724)
Q Consensus 172 ----------------~~~~~l~~~-------~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~ 225 (724)
....++... ...+.-+.++ +.+..++ .|+.|+++|..++..+.....+.
T Consensus 457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~----- 531 (577)
T KOG0642|consen 457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK----- 531 (577)
T ss_pred hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeecc-----
Confidence 000011100 0123344555 3566666 68999999999998876544433
Q ss_pred CCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 226 ELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 226 ~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+.+++. .++..|++| .|+.+++|.+....
T Consensus 532 -~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 532 -DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred -ceecceeecCCCceEEeecCCceeehhhccchh
Confidence 23667777 788899999 99999999986543
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=7.6e-12 Score=119.55 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=121.3
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
....|+++.|+|.+..|+.++.||++++|+....... .++...|+.+++|.++ ..+++|+.||.|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~------~~~~~G~~dg~vr~~Dln-- 83 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE------STIVTGGLDGQVRRYDLN-- 83 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC------ceEEEeccCceEEEEEec--
Confidence 4678999999999999999999999999999886544 3444449999999998 789999999999999885
Q ss_pred CccceEeccCCCCeEEEEEe---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC
Q 004914 171 GYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT 246 (724)
Q Consensus 171 ~~~~~~l~~~~~~V~~l~~~---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~ 246 (724)
......+..|..+|.++.+. |.+|+++.|++|++||.+.......+..+. .+.++.. .+..|++| .+.
T Consensus 84 ~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-------kVy~~~v-~g~~LvVg~~~r 155 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-------KVYCMDV-SGNRLVVGTSDR 155 (323)
T ss_pred CCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-------eEEEEec-cCCEEEEeecCc
Confidence 45566677899999999998 678888899999999999755554443332 2444443 45666665 999
Q ss_pred eEEEEEEeeCCCC
Q 004914 247 YIKIASIKTNQSN 259 (724)
Q Consensus 247 ~i~vw~~~~~~~~ 259 (724)
.|.+||++.....
T Consensus 156 ~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 156 KVLIYDLRNLDEP 168 (323)
T ss_pred eEEEEEcccccch
Confidence 9999999986543
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.41 E-value=9.1e-12 Score=129.45 Aligned_cols=190 Identities=21% Similarity=0.216 Sum_probs=132.8
Q ss_pred CCEEEEEeCCCeEEEEecCCCe-------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE---EEeCC
Q 004914 64 ERMIALGTHAGTVHILDFLGNQ-------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDYH 133 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~-------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~~ 133 (724)
...|+++..+|.|.++|..... +..+.+|...|.++.|.|....|++++.|.+++.||+.++.+. .+.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 4589999999999999984322 3556789999999999996668999999999999999986654 35677
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC----------------c---cceEe----c---cC----CC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG----------------Y---RDQVL----H---SG----EG 182 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~----------------~---~~~~l----~---~~----~~ 182 (724)
. .|.+++|.|. +...|++|+.||.+.||+.+-.+ . ..+.+ + .+ .+
T Consensus 144 ~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 144 TGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 7 9999999998 57899999999999999854332 0 00000 0 11 13
Q ss_pred CeEEEEEe-CCEEEEE--cCCcEEEEEcCCCceEEEecCCCCCCCCCC---C--CCceee-c-CCCeEEEEeCCeEEEEE
Q 004914 183 PVHVVKWR-TSLIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPEL---L--LPHLVW-Q-DDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 183 ~V~~l~~~-~~~la~~--~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~---~--~~~l~~-~-~~~~l~~g~d~~i~vw~ 252 (724)
.|+.+.|. ...||++ .|+.|++||++................+.. . ..+++. . ...+++.|.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 46666676 4566655 499999999997655443222211111111 1 122333 2 34566677999999999
Q ss_pred EeeCC
Q 004914 253 IKTNQ 257 (724)
Q Consensus 253 ~~~~~ 257 (724)
+.+-.
T Consensus 300 m~s~s 304 (720)
T KOG0321|consen 300 MRSLS 304 (720)
T ss_pred ccccC
Confidence 98654
No 157
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-11 Score=114.31 Aligned_cols=157 Identities=19% Similarity=0.305 Sum_probs=126.8
Q ss_pred EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEE
Q 004914 88 EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (724)
Q Consensus 88 ~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (724)
.+++|..+++.+.++.+|.+|.||+.|.+..+|-..+|+ +-++.+|+ .|+|+..+.+ ++.+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-----s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-----SKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----cceeeeccccceeEEE
Confidence 467899999999999999999999999999999876655 56899999 9999999998 8999999999999999
Q ss_pred ecccCCccceEeccCCCCeEEEEEe--CCEEEEEcC------CcEEEEEcC-------CCceEEEecCCCCCCCCCCCCC
Q 004914 166 SKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAND------AGVKVYDAA-------NDQRITFIERPRGSPRPELLLP 230 (724)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d------~~i~i~d~~-------~~~~~~~i~~~~~~~~~~~~~~ 230 (724)
+.. .|+....+. ...+|..+.|+ |++++.++| +.|.++|++ +.++...++.+. ..+.
T Consensus 80 Dv~-tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------skit 151 (327)
T KOG0643|consen 80 DVE-TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------SKIT 151 (327)
T ss_pred EcC-CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------ccee
Confidence 986 555544433 45679999998 677666543 358999998 334455544443 3466
Q ss_pred ceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 231 HLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 231 ~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
...| +-+..++.| .+|.|..||++++.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 7888 678888888 99999999999874
No 158
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.8e-10 Score=124.13 Aligned_cols=110 Identities=25% Similarity=0.435 Sum_probs=95.4
Q ss_pred CCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cchhhhHHHhhhcC----CCCHHHHH
Q 004914 610 DLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYAD-YDLKMLLPFLRSSQ----HYTLEKAY 684 (724)
Q Consensus 610 ~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~-~~~~~ll~fL~~~~----~y~~~~al 684 (724)
..+.|..||..|... +..+-|..||+.|.+..- ...++-.+|+..|.+ .+-++|..|++..+ .+|++.|+
T Consensus 396 ~~le~s~Vi~kfLda----q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al 470 (933)
T KOG2114|consen 396 GFLEPSEVIKKFLDA----QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETAL 470 (933)
T ss_pred ccCChHHHHHHhcCH----HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHH
Confidence 446788888888632 456778899999988754 566778888889986 47889999999987 89999999
Q ss_pred HHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCCccccC
Q 004914 685 EICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEVF 724 (724)
Q Consensus 685 ~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d~~~Ai 724 (724)
++|.+.++.+++-||-.|-++|+.+|.++++.++++.+|+
T Consensus 471 ~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl 510 (933)
T KOG2114|consen 471 EILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEAL 510 (933)
T ss_pred HHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999999999999999884
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.39 E-value=4.7e-10 Score=116.14 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=126.5
Q ss_pred EEEEecCCEE-EEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEE-EeCCCCEEEEeccCCceE-EEeCC
Q 004914 58 SCVAVAERMI-ALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGSVVINSLFTDEKM-KFDYH 133 (724)
Q Consensus 58 ~~~s~~~~~l-a~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~v~iwd~~~~~~~-~~~~~ 133 (724)
.+++++++.+ ++++.++.|++||.. +.....+..+.. +..++|+|+|+.+++ ++.|+.+++||+.++... .+..+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 4688888866 667789999999994 555555655543 567899999997754 456899999999886544 34433
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCe-EEEEecccCCccceEeccCCCCeEEEEEe--CCEEE-EE-cCCcEEEEEcC
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA-WA-NDAGVKVYDAA 208 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la-~~-~d~~i~i~d~~ 208 (724)
..+.+++|+|+ +..+++++.++. +..|+.. .+.....+. ....+.++.|+ ++.++ ++ .++.|++||+.
T Consensus 115 ~~~~~~~~~~d-----g~~l~~~~~~~~~~~~~d~~-~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 115 VEPEGMAVSPD-----GKIVVNTSETTNMAHFIDTK-TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred CCcceEEECCC-----CCEEEEEecCCCeEEEEeCC-CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 46789999999 888888887764 4455543 222222222 22334667887 66664 44 48899999999
Q ss_pred CCceEEEecCCCCC-CCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 209 NDQRITFIERPRGS-PRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 209 ~~~~~~~i~~~~~~-~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
+++.+..+...... .........+.| +++..++++ .++.+.+||+.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 98877665432111 111122345667 566665444 5678999998653
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=4.7e-12 Score=130.91 Aligned_cols=200 Identities=19% Similarity=0.334 Sum_probs=142.2
Q ss_pred CCccccCCCceEEEE--e-cCCEEEEEeCCCeEEEEecC--CC------eeEEEcCCccceeEEEEcCC-CCEEEEEeCC
Q 004914 47 SLPSLLANDAASCVA--V-AERMIALGTHAGTVHILDFL--GN------QVKEFPAHTAAVNDLSFDVD-GEYVGSCSDD 114 (724)
Q Consensus 47 ~~~~~~~~~~i~~~s--~-~~~~la~g~~dg~I~i~d~~--~~------~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~D 114 (724)
.++.++++..|+.+. | |...||+++.||.|++|.+. |- ....+.+|...|+++.|+|- .+.|++++.|
T Consensus 620 v~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 620 VMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred cccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 355666777777754 4 57799999999999999983 21 24667899999999999995 4578999999
Q ss_pred CCEEEEeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe----EEEE
Q 004914 115 GSVVINSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV----HVVK 188 (724)
Q Consensus 115 g~v~iwd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V----~~l~ 188 (724)
-+|++||+.++.. ..+.+|. .|.+++|+|+ |+.+++.+.||++++|..+ .....+....++| -.|.
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd-----Gr~~AtVcKDg~~rVy~Pr---s~e~pv~Eg~gpvgtRgARi~ 771 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPD-----GRRIATVCKDGTLRVYEPR---SREQPVYEGKGPVGTRGARIL 771 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCC-----CcceeeeecCceEEEeCCC---CCCCccccCCCCccCcceeEE
Confidence 9999999999654 5789999 9999999999 9999999999999999875 2222233333333 2455
Q ss_pred Ee--CCEEEEE-c----CCcEEEEEcCC--CceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 189 WR--TSLIAWA-N----DAGVKVYDAAN--DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 189 ~~--~~~la~~-~----d~~i~i~d~~~--~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|. |+++++. - .+.|.+||..+ +..+.+.... ......++......+-++++| .|..|.+|.+....
T Consensus 772 wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 772 WACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred EEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---ccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 65 6665544 2 34688888764 2333321111 112223444444566778888 77889999886543
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=3.6e-11 Score=113.74 Aligned_cols=191 Identities=18% Similarity=0.218 Sum_probs=139.9
Q ss_pred eEEEEe---cCCEEEEEeCCCeEEEEecC-CC---eeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceE
Q 004914 57 ASCVAV---AERMIALGTHAGTVHILDFL-GN---QVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 57 i~~~s~---~~~~la~g~~dg~I~i~d~~-~~---~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
+++|.. +.++|.+.+-|-+..|||+. |. ....+-+|...|.+++|...|. .+||+|.||.|+++|++.-...
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 555544 57899999999999999993 32 2456778999999999998664 7999999999999999984433
Q ss_pred E--EeC---CCCeeEEEeCCCCCCCCCCEEEEecCCC-eEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-c
Q 004914 129 K--FDY---HRPMKAISLDPDYTRKMSRRFVAGGLAG-HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-N 198 (724)
Q Consensus 129 ~--~~~---~~~v~~v~~~p~~~~~~~~~l~~g~~dg-~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~ 198 (724)
+ +.. +.+...++|++. ..+++++-..|+ .|.+.+.+........+..|.+.|.+++|. +..|+++ .
T Consensus 233 TIIYE~p~~~~pLlRLswnkq----DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQ----DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred eEEecCCCCCCcceeeccCcC----CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 2 222 228888999886 467777765554 588888887778888899999999999999 3566666 6
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEEeCCeEEEEE
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~ 252 (724)
|..+.+||+..... ..+..|-..-..+.-+..+.| ..+..++++.++++.+..
T Consensus 309 D~qaliWDl~q~~~-~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 309 DCQALIWDLQQMPR-ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred cceEEEEecccccc-cCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 88999999985432 111112111123334778889 367788888888876643
No 162
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.3e-11 Score=122.82 Aligned_cols=194 Identities=19% Similarity=0.253 Sum_probs=139.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE-e-
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-D- 131 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~- 131 (724)
..+.|++.+|..+++|+.||++|+|+. +-..+.....|.+.|.++.|+|||++|++.+.| ..+||+..++..... .
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 457899999999999999999999995 555566778899999999999999999999999 999999999744322 2
Q ss_pred CCC--CeeEEEeCCCCCCCCC-CEEEEecCCCeEEEEec-ccCCc----cceEeccCCCCeEEEEEe--CCEEEEE-cCC
Q 004914 132 YHR--PMKAISLDPDYTRKMS-RRFVAGGLAGHLYLNSK-KWLGY----RDQVLHSGEGPVHVVKWR--TSLIAWA-NDA 200 (724)
Q Consensus 132 ~~~--~v~~v~~~p~~~~~~~-~~l~~g~~dg~v~l~~~-~~~~~----~~~~l~~~~~~V~~l~~~--~~~la~~-~d~ 200 (724)
... ....+.|+.+-+. .. ..++.....+.|+.|+. .|.+. ..+.+. ....|++++.+ |++++.+ .||
T Consensus 226 ~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCC
Confidence 222 6677788777111 01 23333344455666543 23331 111122 23468888888 8999998 699
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|-|++..+-+.+..++.. |..+++.+.| ++.+.++.- .+....|..+...
T Consensus 304 sVai~~~~~lq~~~~vk~a-----H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEA-----HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cEEEEEeceeeeeEeehhh-----heeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999988888776544 4457888999 666666555 7777887777653
No 163
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.35 E-value=1.6e-11 Score=116.16 Aligned_cols=158 Identities=21% Similarity=0.263 Sum_probs=121.8
Q ss_pred EcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCc------------eE----EEeCCC-CeeEEEeCCCCCCCCC
Q 004914 89 FPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDE------------KM----KFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 89 ~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~------------~~----~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
.+.|.+.|+++.+.+ .|++++||+.||.|.+||+.+.. +. .-+.|+ .|.++.|-|- +.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cC
Confidence 457999999999987 58899999999999999997622 11 125677 9999999997 46
Q ss_pred CEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-----CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCC
Q 004914 151 RRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-----TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR 224 (724)
Q Consensus 151 ~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-----~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~ 224 (724)
..|.+++-|.++++|+.+. .+.......++.|.+-+|+ ..+||++ .+-.|++.|+.+|..-.++..+..
T Consensus 115 GmFtssSFDhtlKVWDtnT--lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~--- 189 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNT--LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD--- 189 (397)
T ss_pred ceeecccccceEEEeeccc--ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC---
Confidence 7999999999999998752 2222233456677777776 3678888 467899999999998888666543
Q ss_pred CCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 225 PELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 225 ~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
-+..+.| ...-.|++| .||.|++||++.-..
T Consensus 190 ---~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg 223 (397)
T KOG4283|consen 190 ---GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG 223 (397)
T ss_pred ---ceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence 3677888 355678888 999999999997543
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=116.94 Aligned_cols=184 Identities=15% Similarity=0.252 Sum_probs=135.5
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcC--Ccc---ceeEEEEcCCCCEEEEEeCCCCEEEEecc-CCce---EE-E
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPA--HTA---AVNDLSFDVDGEYVGSCSDDGSVVINSLF-TDEK---MK-F 130 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~--h~~---~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~~~~---~~-~ 130 (724)
|+.+++|+.+.+.-|++||. +|.....+++ |.. .-.+++|+|||..|++|. ...|+++|+. .|.- .+ +
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 45678999999999999999 6766555544 433 345799999999987765 5699999994 3431 11 1
Q ss_pred e---CC-C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCc
Q 004914 131 D---YH-R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAG 201 (724)
Q Consensus 131 ~---~~-~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~ 201 (724)
. .. . -+.|++|+|. +...+++|+....+-++.-. .+....++.+|.+.|+.+.|+ |+.+.++ .|..
T Consensus 200 ~~~k~gq~giisc~a~sP~----~~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPM----DSKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred hcccccccceeeeeeccCC----CCcceeeecccceeeeEecC-CCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 1 11 2 7889999998 46799999998888887553 357788889999999999999 6655555 5889
Q ss_pred EEEEEcCC-CceEEEecCCCCCCCCCCCCCceee---cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 202 VKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW---QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 202 i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|-.||++. +.++..+.++.+. ..-.+.| +.++.|++| .+|.|++||+++-
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~-----TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGD-----TNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred EEEEeehhccchhhhhhhhccC-----ccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 99999984 4444445444321 1223444 578999999 9999999999873
No 165
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.33 E-value=8e-12 Score=126.10 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=138.7
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCe--e-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQ--V-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~--~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~- 134 (724)
+.++|+.|++|+.-.++.|||+.... + ..+....-....++.+||.+..++|..||.|.|||+.+.. +..+.+|.
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 77899999999999999999994322 2 2333333466778999999999999999999999999855 45689999
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
.+.||.++++ |..+-+|+-|.+|+.|+.+ .+.+.. -+...+.|.++..+ +.+++++ .++.+-+-......
T Consensus 553 GascIdis~d-----GtklWTGGlDntvRcWDlr-egrqlq-qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 553 GASCIDISKD-----GTKLWTGGLDNTVRCWDLR-EGRQLQ-QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred CceeEEecCC-----CceeecCCCccceeehhhh-hhhhhh-hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999 8999999999999999876 333222 12345778888888 7899999 56667666654332
Q ss_pred eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
. ..+. .|+..+.++.| ..|+.+++. .|+-+..|..--+.
T Consensus 626 k-yqlh------lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 626 K-YQLH------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred c-eeec------ccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 2 2222 23445677777 677777765 89999999876544
No 166
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9e-09 Score=110.67 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=92.2
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC-----CCEEEEEeCCCCEEEEeccC-Cc--eEEEeCC
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-----GEYVGSCSDDGSVVINSLFT-DE--KMKFDYH 133 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-----g~~l~s~~~Dg~v~iwd~~~-~~--~~~~~~~ 133 (724)
.|.++++|+.||+|.|..+ +++....+. ...++.+++++|+ .+.+++||..| +.++.-.. |. ...+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 5889999999999999988 555555554 3458999999997 56799999999 77775443 22 2223333
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC------CCeEEEEEe-CCEEEEEcCCcEEEE
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE------GPVHVVKWR-TSLIAWANDAGVKVY 205 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~------~~V~~l~~~-~~~la~~~d~~i~i~ 205 (724)
. +|.++.|.. +++|=++.+| |++|+.. .+.....+.... ..-..+.|. ...++.|...+|+|.
T Consensus 160 eG~I~~i~W~g-------~lIAWand~G-v~vyd~~-~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~ 230 (846)
T KOG2066|consen 160 EGPIHSIKWRG-------NLIAWANDDG-VKVYDTP-TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKIC 230 (846)
T ss_pred ccceEEEEecC-------cEEEEecCCC-cEEEecc-ccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEE
Confidence 3 999999965 4777777665 6677764 233333332221 123457787 567777777788999
Q ss_pred EcC
Q 004914 206 DAA 208 (724)
Q Consensus 206 d~~ 208 (724)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 887
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.32 E-value=3.6e-11 Score=125.15 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=124.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CCeeE--EEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCce-------
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GNQVK--EFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEK------- 127 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~~~~--~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~------- 127 (724)
.|.|....|++.+.|.+++.||+. +..+. .+.+|.+.|.+++|.|... .|++|+.||.|.|||++-...
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 477866789999999999999995 44443 3789999999999999765 688999999999999863210
Q ss_pred ---------------------EEEeCCC-----CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCC-----ccce
Q 004914 128 ---------------------MKFDYHR-----PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLG-----YRDQ 175 (724)
Q Consensus 128 ---------------------~~~~~~~-----~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~-----~~~~ 175 (724)
.....+. .|+.+.|-.+ ..+|+++. ||.|++|+.+-.. ....
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe------~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE------STLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc------ceeeeccCCCcceEEEeecccccccccCCCc
Confidence 0011111 3444555443 78888776 9999999876332 1111
Q ss_pred --EeccC---CCCeEEEEEe--CCEE-EEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC
Q 004914 176 --VLHSG---EGPVHVVKWR--TSLI-AWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT 246 (724)
Q Consensus 176 --~l~~~---~~~V~~l~~~--~~~l-a~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~ 246 (724)
.++.+ .-.++++... |.++ |.++|+.|+.|++.+-..--. ....+......++-+..-.++..+++| +|.
T Consensus 261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~-~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV-AEFSGKLNSSFYVKSELSPDDCSLLSGSSDE 339 (720)
T ss_pred ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch-hhccCcccceeeeeeecCCCCceEeccCCCc
Confidence 11112 1234455544 5554 555899999999985432111 111112222223333333578888898 999
Q ss_pred eEEEEEEeeCCC
Q 004914 247 YIKIASIKTNQS 258 (724)
Q Consensus 247 ~i~vw~~~~~~~ 258 (724)
..++|.+.....
T Consensus 340 ~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 340 QAYIWVVSSPEA 351 (720)
T ss_pred ceeeeeecCccC
Confidence 999999987553
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.30 E-value=8.3e-11 Score=117.99 Aligned_cols=194 Identities=19% Similarity=0.252 Sum_probs=141.7
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEecCCCee---EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--eEEEeC
Q 004914 59 CVAV-AERMIALGTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--KMKFDY 132 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--~~~~~~ 132 (724)
.|+| +...+.+.+.||+|+.-|+++... .........+.++.|+.+...++.+..=|...+||++++. ...+..
T Consensus 241 ~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred EecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 3666 456888999999999999966542 2333345567788888888888888888899999999844 345666
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce-Ee--ccCCCCeEEEEEe---CCEEEEEcCCcEEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ-VL--HSGEGPVHVVKWR---TSLIAWANDAGVKVY 205 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~-~l--~~~~~~V~~l~~~---~~~la~~~d~~i~i~ 205 (724)
|. .|++++++|- ....|++++.|++.++|+.+-.+.+.. .+ ..|..+|.+..|+ |.++.++.|..|+||
T Consensus 321 h~kKI~sv~~NP~----~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 321 HKKKITSVALNPV----CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhcccceeecCCC----CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 77 9999999998 467899999999999999875554332 33 3488899999999 576667789999999
Q ss_pred EcC----CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 206 DAA----NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 206 d~~----~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|.. .-.+...|.+.....++ ..+....| ++..++++| .-..|-|+|-..++
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ecccccccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 984 33444455544332222 22445678 677888888 66678888766554
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=6.2e-10 Score=102.89 Aligned_cols=185 Identities=11% Similarity=0.168 Sum_probs=138.7
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCC-------CeeEE--EcCCc-----cceeEEEEcCCCCEEEEEeCCCCEEEEec
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLG-------NQVKE--FPAHT-----AAVNDLSFDVDGEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~-------~~~~~--~~~h~-----~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~ 122 (724)
+..+.....+|.+|+. |.|+=|..+- +.... ...|. -.|+++..+|..+-++.++.||.++-||+
T Consensus 65 iy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 65 IYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred eeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 4455666777777665 9999887621 11111 11232 36899999998888888889999999999
Q ss_pred cCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc---------C-CCCeEEEEEe
Q 004914 123 FTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---------G-EGPVHVVKWR 190 (724)
Q Consensus 123 ~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~---------~-~~~V~~l~~~ 190 (724)
.+|++. .+.+|+ .|++++--.. +..+++|+.||++++|+.. +++...++.. + ...|-+++.+
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~-----~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk~~~~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNA-----NGQILSGAEDGTVRVWDTK-TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN 217 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeeccc-----CcceeecCCCccEEEEecc-ccceeEEeccccChhhcCcccCceeEEEecc
Confidence 999885 589999 9999988554 5789999999999999986 4444444422 2 2346777777
Q ss_pred CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEee
Q 004914 191 TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 191 ~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~ 255 (724)
..+++++....+.+|++++.++...++.+. .+-.+.|.++..++.|.+++|.-|.+..
T Consensus 218 edWlvCGgGp~lslwhLrsse~t~vfpipa-------~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 218 EDWLVCGGGPKLSLWHLRSSESTCVFPIPA-------RVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CceEEecCCCceeEEeccCCCceEEEeccc-------ceeEeeeecceEEEeccccceeeeeecc
Confidence 899999988889999999999888877664 2445667777788888899999998753
No 170
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.29 E-value=9.2e-10 Score=111.70 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=135.6
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-------
Q 004914 57 ASCVAV--AERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------- 126 (724)
Q Consensus 57 i~~~s~--~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------- 126 (724)
+.|+.+ +|. +++|.++|.|.||+..+..+ +...+|.+.|.+++.-.+|.. +||+.|..|..||-.-++
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCc
Confidence 666555 444 55999999999999966553 555699999999999999984 569999999999822110
Q ss_pred ----------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC
Q 004914 127 ----------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (724)
Q Consensus 127 ----------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (724)
.....+|. ..+.++.+|+ ..++++++.|+.+++|+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-----~~q~~T~gqdk~v~lW~~---- 397 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-----KNQLLTCGQDKHVRLWND---- 397 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-----hhheeeccCcceEEEccC----
Confidence 11223455 7789999998 789999999999999862
Q ss_pred ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC
Q 004914 172 YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT 246 (724)
Q Consensus 172 ~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~ 246 (724)
.+..--..-..++.++.|+ | .+|.+ ..|...+.|..+...+.. .... .....+.+ ++|..|++| .|+
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~------~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDN------EQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-EecC------CceEEEEEcCCCCEEEEecCCC
Confidence 2222222345678899998 6 66666 688899999998665543 2211 23567788 799999999 999
Q ss_pred eEEEEEEeeCCC
Q 004914 247 YIKIASIKTNQS 258 (724)
Q Consensus 247 ~i~vw~~~~~~~ 258 (724)
.|++|.+..+..
T Consensus 470 ~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 470 HIYIYRVSANGR 481 (626)
T ss_pred eEEEEEECCCCc
Confidence 999999987653
No 171
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.29 E-value=1.2e-10 Score=122.28 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=135.0
Q ss_pred CEEEEEeCCCeEEEEecCC----CeeE----------------------------------EEcCCccceeEEEEcCCCC
Q 004914 65 RMIALGTHAGTVHILDFLG----NQVK----------------------------------EFPAHTAAVNDLSFDVDGE 106 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~----~~~~----------------------------------~~~~h~~~V~~l~~s~~g~ 106 (724)
..+.+++.||+|++|++.+ ...+ ..-.....|.+++++|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 3578999999999999854 1100 0011234689999999999
Q ss_pred EEEEEeCCCCEEEEeccC-CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe
Q 004914 107 YVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V 184 (724)
+|++|..-|+++|+++.. .....+..|. .|.|+.++-.- ...+++++++.|.-|.+++..-.-....++.+|...|
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCch--hhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 999999999999999988 4456788888 99999997531 1247899999999999998764446678889999999
Q ss_pred EEEEEe--C---CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 185 HVVKWR--T---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 185 ~~l~~~--~---~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++.|. | ++|.+|.|..|.+-..+.......+.++....++. ....+.. ++..+++++ .|..|+||++..++
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt-TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT-TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc-eEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 999998 3 56777778776443322211122233332222211 1223333 344555555 99999999999887
Q ss_pred CCCCC
Q 004914 258 SNVAN 262 (724)
Q Consensus 258 ~~~~~ 262 (724)
....+
T Consensus 630 q~k~F 634 (1080)
T KOG1408|consen 630 QVKSF 634 (1080)
T ss_pred eeeee
Confidence 65443
No 172
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=7e-10 Score=114.81 Aligned_cols=179 Identities=11% Similarity=0.113 Sum_probs=125.8
Q ss_pred CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceEE-EeCCCCeeEEE
Q 004914 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKMK-FDYHRPMKAIS 140 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~ 140 (724)
++.+++++.+|.+++||. ++..+..+..+. .+.+++|+|+|+.+ ++++.++.|++||..+++... +..+..+..++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 357889999999999999 566667776554 46789999999976 567789999999999876543 44444567889
Q ss_pred eCCCCCCCCCCEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc-C-CcEEEEEcCCCceEEE
Q 004914 141 LDPDYTRKMSRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-D-AGVKVYDAANDQRITF 215 (724)
Q Consensus 141 ~~p~~~~~~~~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-d-~~i~i~d~~~~~~~~~ 215 (724)
|+|+ ++.++ +++.++.+.+|+.. .+.....+. ....+.+++|+ |.+++++. + ..+.+||..+++....
T Consensus 80 ~~~~-----g~~l~~~~~~~~~l~~~d~~-~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 80 LHPN-----GKILYIANEDDNLVTVIDIE-TRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred ECCC-----CCEEEEEcCCCCeEEEEECC-CCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 9999 66554 55668999999875 233233332 22346788888 67777663 3 3577889988777654
Q ss_pred ecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 216 IERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
+.... .+..+.| ++++.++++ .++.|++||+.++.
T Consensus 153 ~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 153 VLVDQ-------RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred EEcCC-------CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 43221 1335677 577767544 58999999998754
No 173
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-10 Score=120.32 Aligned_cols=160 Identities=16% Similarity=0.304 Sum_probs=113.6
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEE
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (724)
..+++|++.|.+|+.+|.|.+|++|+.||+|+||.+.++.+. ++.....|.||+|+|. ....++....++.+.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~----~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPL----SDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCC----CCceeEEEEecCceEEe
Confidence 467899999999999999999999999999999999998765 5777779999999998 22333333333344333
Q ss_pred ec-----------------------------ccCCc-------cceEeccCCCCeEEEEEe--CCEEEEEc----CCcEE
Q 004914 166 SK-----------------------------KWLGY-------RDQVLHSGEGPVHVVKWR--TSLIAWAN----DAGVK 203 (724)
Q Consensus 166 ~~-----------------------------~~~~~-------~~~~l~~~~~~V~~l~~~--~~~la~~~----d~~i~ 203 (724)
+. .|... ..++.-.|..+|..+.|+ |.++++.. ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 21 12210 012333467789999999 88888762 35688
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeC
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
|+++..+.....+....+ .+-++.| +....|+++....|++||+..+
T Consensus 550 iHQLSK~~sQ~PF~kskG------~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq 597 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKG------LVQRVKFHPSKPYLFVATQRSVRIYDLSKQ 597 (733)
T ss_pred EEecccccccCchhhcCC------ceeEEEecCCCceEEEEeccceEEEehhHH
Confidence 999876554433322222 2445667 5667888899999999999764
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.27 E-value=4e-11 Score=115.40 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=123.3
Q ss_pred EEec-CCEEEEEeCCCeEEEEec-CCCeeEE---EcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE------
Q 004914 60 VAVA-ERMIALGTHAGTVHILDF-LGNQVKE---FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM------ 128 (724)
Q Consensus 60 ~s~~-~~~la~g~~dg~I~i~d~-~~~~~~~---~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~------ 128 (724)
+.|+ .+++++|+.|.+|++|++ +...+.. +.+|.+.|.++.|+++|.+|+|||.|.++++|++...+..
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s 222 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS 222 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh
Confidence 4554 568999999999999999 4555444 4669999999999999999999999999999999742210
Q ss_pred -----------------------EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc----------c
Q 004914 129 -----------------------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR----------D 174 (724)
Q Consensus 129 -----------------------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~----------~ 174 (724)
+...|+ .|-|+.|- |.++++-+-++.|..|..+-.+.. .
T Consensus 223 ~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 223 ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred cccCCCCccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 112233 44455553 457888888899999976322111 1
Q ss_pred eEe---ccCCCCeEEEEEe----CCEEEEE-cCCcEEEEEcCCCceEE--EecCCCCCCCCCCCCCceee-cCCCeEEE-
Q 004914 175 QVL---HSGEGPVHVVKWR----TSLIAWA-NDAGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLVW-QDDTLLVI- 242 (724)
Q Consensus 175 ~~l---~~~~~~V~~l~~~----~~~la~~-~d~~i~i~d~~~~~~~~--~i~~~~~~~~~~~~~~~l~~-~~~~~l~~- 242 (724)
.++ .-....|+-+.|. ++++|.+ ..|.|.+||++...+.. ++..+. ....+...+| .++..|+.
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~----~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK----SGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc----ccceeeeeeecccCcEEEEE
Confidence 111 1234566777776 5788888 58899999999765431 222111 1223555666 45555544
Q ss_pred EeCCeEEEEEEe
Q 004914 243 GWGTYIKIASIK 254 (724)
Q Consensus 243 g~d~~i~vw~~~ 254 (724)
+.+++|.=||..
T Consensus 372 cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 372 CDDGTVWRWDRV 383 (385)
T ss_pred eCCCcEEEEEee
Confidence 488888888764
No 175
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.23 E-value=3.3e-10 Score=114.51 Aligned_cols=187 Identities=13% Similarity=0.201 Sum_probs=126.0
Q ss_pred EEEecCCEEEEEe--CCCeEEEEecCCCe--eEEE-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeC
Q 004914 59 CVAVAERMIALGT--HAGTVHILDFLGNQ--VKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~--~dg~I~i~d~~~~~--~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~ 132 (724)
||+.. +++++++ .|..|++|...|+. +... +.....-.|++......++++||..|.|+|||++.+.+.+ +..
T Consensus 41 ~w~~~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd 119 (673)
T KOG4378|consen 41 NWQRR-NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKD 119 (673)
T ss_pred ecccc-ceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccC
Confidence 44433 3355554 46688899887662 2111 1112233455555566899999999999999999766654 677
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC-CCeEEEEEeC---CEEEEE-cCCcEEEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE-GPVHVVKWRT---SLIAWA-NDAGVKVYD 206 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~-~~V~~l~~~~---~~la~~-~d~~i~i~d 206 (724)
|. .|++|.++.. ..++++++..|.|.+.... .+.+...+.... ..|.-+.|+. .++.++ .+|.|.+||
T Consensus 120 h~stvt~v~YN~~-----DeyiAsvs~gGdiiih~~~-t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 120 HQSTVTYVDYNNT-----DEYIASVSDGGDIIIHGTK-TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred CcceeEEEEecCC-----cceeEEeccCCcEEEEecc-cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 87 9999999887 7999999999999998764 444455555443 3455788882 344444 578999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEE-EEeCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLV-IGWGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~-~g~d~~i~vw~~~~~~ 257 (724)
+....++..+...+ ......+|| .+..+++ +|.|..|.+||++...
T Consensus 194 v~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 194 VQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred ccCCCcccchhhhc-----cCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 99887776543332 223445666 3444444 3499999999998644
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.22 E-value=5e-10 Score=106.01 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=115.1
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEec-CCCe-eEEE-----cCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccC
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDF-LGNQ-VKEF-----PAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~-~~~~-----~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~ 124 (724)
.+.| |.|++..+++-. +..|.+|++ ++.. +..+ ..|....++-.|+| +|+.+++.+ |+++..||+++
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccc
Confidence 3555 888888887665 788999999 4433 2222 23566778889998 677777665 78999999998
Q ss_pred Cc-eEEE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-
Q 004914 125 DE-KMKF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA- 197 (724)
Q Consensus 125 ~~-~~~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~- 197 (724)
.. ...+ ..|. .|..+.|+|+ ....+++|+.||.|++|+.+-.....+.+++|...|+++.|+ .++|.++
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpn----kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPN----KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCC----ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 43 3333 5566 8999999999 467899999999999999987778888999999999999999 4666665
Q ss_pred cCCcEEEEEcCC
Q 004914 198 NDAGVKVYDAAN 209 (724)
Q Consensus 198 ~d~~i~i~d~~~ 209 (724)
+|..|.+|-..+
T Consensus 279 SDs~V~Lsca~s 290 (370)
T KOG1007|consen 279 SDSAVNLSCASS 290 (370)
T ss_pred CCceeEEEeccc
Confidence 899999997653
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.22 E-value=8e-10 Score=119.59 Aligned_cols=194 Identities=13% Similarity=0.194 Sum_probs=134.0
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecCCCe---e----EEEcCCccceeEEEEcCCCC--EEEEEeCCCCEEEEec
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFLGNQ---V----KEFPAHTAAVNDLSFDVDGE--YVGSCSDDGSVVINSL 122 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~~~---~----~~~~~h~~~V~~l~~s~~g~--~l~s~~~Dg~v~iwd~ 122 (724)
..++| ++| +++.+|.|+.+|.|.+||..+.. . .....|..+|+.+.|..+.. -++|++.||.|..|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 34666 444 67899999999999999994322 1 12245889999999976544 4999999999999987
Q ss_pred cCCc------eEE--E----eCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec-ccCCcc------ceEeccCC
Q 004914 123 FTDE------KMK--F----DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-KWLGYR------DQVLHSGE 181 (724)
Q Consensus 123 ~~~~------~~~--~----~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-~~~~~~------~~~l~~~~ 181 (724)
+.-. ... . .... .+++++|.|. ....|++|+.+|.|.--.+ +..... ......|.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccC----CCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 7511 111 1 1122 8899999987 4688999999999876332 111111 11334478
Q ss_pred CCeEEEEEe---CCEEEEEcCCcEEEEEcC-CCceEEEecCCCCCCCCCCCCCceeecC--CCeEEEE-eCCeEEEEEEe
Q 004914 182 GPVHVVKWR---TSLIAWANDAGVKVYDAA-NDQRITFIERPRGSPRPELLLPHLVWQD--DTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 182 ~~V~~l~~~---~~~la~~~d~~i~i~d~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~~--~~~l~~g-~d~~i~vw~~~ 254 (724)
++|.++.++ ..++.++.|.+++||+.. ...++..+... ..++..++|+. ...++++ .+|.+.+||+.
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~------~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS------PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc------cceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 999999999 356666679999999987 44444433222 22477889953 4567777 79999999998
Q ss_pred eCCC
Q 004914 255 TNQS 258 (724)
Q Consensus 255 ~~~~ 258 (724)
....
T Consensus 473 ~~~~ 476 (555)
T KOG1587|consen 473 QDDE 476 (555)
T ss_pred cccc
Confidence 7653
No 178
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=1.4e-09 Score=104.74 Aligned_cols=195 Identities=15% Similarity=0.286 Sum_probs=137.7
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCe----eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-Cc-
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQ----VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DE- 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~- 126 (724)
.+|+| |+.++..+|++..+..|.||...+.. ..+++.|...|++++|+|..+.|++|+.|..-++|.... ++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 34555 77789999999999999999985443 578889999999999999999999999999999999844 32
Q ss_pred --eEE-EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc----cCCccceEeccCCCCeEEEEEe--CCEEEEE
Q 004914 127 --KMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK----WLGYRDQVLHSGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 127 --~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~----~~~~~~~~l~~~~~~V~~l~~~--~~~la~~ 197 (724)
... +...+..++|.|+|. ++.|++|+....|.+|-.. |-- ...+-....+.|+++.|+ +-+++.+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWV-sKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWV-SKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred ccceeEEEeccceeeEeecCc-----CceEEeccCccEEEEEEEecccceeh-hhhhCCccccceeeeeccCCcceeccc
Confidence 223 455559999999999 8999999999998887432 210 011123356789999999 3455555
Q ss_pred -cCCcEEEEEcCCCceEEEecCC----CC---------CCCCCCCCCceee-cCCCeEE-EEeCCeEEEEEEeeC
Q 004914 198 -NDAGVKVYDAANDQRITFIERP----RG---------SPRPELLLPHLVW-QDDTLLV-IGWGTYIKIASIKTN 256 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i~~~----~~---------~~~~~~~~~~l~~-~~~~~l~-~g~d~~i~vw~~~~~ 256 (724)
.|+.+|+|...-+..-.. +.+ .. ......++..+.| +.|..|+ ++.|.++.+-|-...
T Consensus 165 s~D~k~rVfSayIK~Vdek-pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEK-PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccCcceeEEEEeeeccccC-CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 699999998642211000 000 00 0123445667778 4566555 558889988876543
No 179
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5.4e-10 Score=107.05 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc
Q 004914 96 VNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR 173 (724)
Q Consensus 96 V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~ 173 (724)
-.|+.|++.|.++|+|..||.|.|||+.+..+ ..+..|. ||+|++|+++ |+.+++++.|..+.+|+.. .|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-----gr~LltsS~D~si~lwDl~-~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-----GRKLLTSSRDWSIKLWDLL-KGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-----CCEeeeecCCceeEEEecc-CCCc
Confidence 67899999999999999999999999999554 4578888 9999999999 9999999999999999986 4554
Q ss_pred ceEeccCCCCeEEEEEeC----CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCC-Cceee-cCCCeEEEE-eCC
Q 004914 174 DQVLHSGEGPVHVVKWRT----SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLL-PHLVW-QDDTLLVIG-WGT 246 (724)
Q Consensus 174 ~~~l~~~~~~V~~l~~~~----~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~-~~l~~-~~~~~l~~g-~d~ 246 (724)
...+. ..+||++..|++ ..+++-.+..-.+.++..++. ..++.. ..+..... .+..| ..|.++++| ..|
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d--~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKD--DDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCC--CccccccccccccccCCCCEEEEecCcc
Confidence 43332 467999999993 455555555555666654221 122221 11111111 22334 678999999 889
Q ss_pred eEEEEEEeeC
Q 004914 247 YIKIASIKTN 256 (724)
Q Consensus 247 ~i~vw~~~~~ 256 (724)
.+.|++..+-
T Consensus 176 kllv~~a~t~ 185 (405)
T KOG1273|consen 176 KLLVYDAETL 185 (405)
T ss_pred eEEEEecchh
Confidence 9999998774
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=9.1e-10 Score=113.96 Aligned_cols=190 Identities=12% Similarity=0.193 Sum_probs=128.9
Q ss_pred CceEEEE--ecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCE-EEEEeCCC---------------
Q 004914 55 DAASCVA--VAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEY-VGSCSDDG--------------- 115 (724)
Q Consensus 55 ~~i~~~s--~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg--------------- 115 (724)
+.+.|+| |.|.+||+|+.||+|+||.+ +|.+++++.. .+.|.|++|+|.+.. ++.+..++
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 4466655 46889999999999999999 8888877653 347999999997763 22222222
Q ss_pred ------------------CEEEEeccC------CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCC---eEEEEecc
Q 004914 116 ------------------SVVINSLFT------DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKK 168 (724)
Q Consensus 116 ------------------~v~iwd~~~------~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~ 168 (724)
.+..|.-.. +.+..+....+|+.+.||.. |.+|++...++ .|.+++..
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-----GDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-----GDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-----CceEEEeccCCCcceEEEEecc
Confidence 233443321 11233444449999999999 89999875543 46666553
Q ss_pred cCCccceEeccCCCCeEEEEEeC--CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-e
Q 004914 169 WLGYRDQVLHSGEGPVHVVKWRT--SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-W 244 (724)
Q Consensus 169 ~~~~~~~~l~~~~~~V~~l~~~~--~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~ 244 (724)
.......+....|.|.++.|++ .++++++-..|+|||+..+..++.+... ..++..++. +.|..|++| .
T Consensus 555 -K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg------~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 555 -KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG------SKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred -cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC------CeeeeeeeecCCCCeEEEecC
Confidence 2233344555678899999994 6777788899999999876655542221 124555555 456666666 8
Q ss_pred CCeEEEEEEeeCC
Q 004914 245 GTYIKIASIKTNQ 257 (724)
Q Consensus 245 d~~i~vw~~~~~~ 257 (724)
++.+..+|+.-+.
T Consensus 628 d~k~~WfDldlss 640 (733)
T KOG0650|consen 628 DKKMCWFDLDLSS 640 (733)
T ss_pred CCeeEEEEcccCc
Confidence 9999999987654
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.18 E-value=2.8e-10 Score=107.65 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=109.4
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEecC-CCeeEE-EcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCC--ceEEEe
Q 004914 59 CVAV--AERMIALGTHAGTVHILDFL-GNQVKE-FPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD--EKMKFD 131 (724)
Q Consensus 59 ~~s~--~~~~la~g~~dg~I~i~d~~-~~~~~~-~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~--~~~~~~ 131 (724)
.|+| +|+.++ .+.++++..||.. ...... -.+|...|.++.|+|+.+ +|+||++||.|++||.++. .+..+.
T Consensus 177 ~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 3888 466664 4668999999994 333333 357888999999999877 5889999999999999973 456788
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc----------------------------CCccceEeccCCC
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW----------------------------LGYRDQVLHSGEG 182 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~----------------------------~~~~~~~l~~~~~ 182 (724)
.|. .|++|.|+|.+ .+++++|+.|..|.+|...- ......++..|+.
T Consensus 256 ~HsHWvW~VRfn~~h----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEH----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred CCceEEEEEEecCcc----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 899 99999999984 68899999999999983110 0122335566889
Q ss_pred CeEEEEEe--CCEEEEE--cCCcEEEEEcC
Q 004914 183 PVHVVKWR--TSLIAWA--NDAGVKVYDAA 208 (724)
Q Consensus 183 ~V~~l~~~--~~~la~~--~d~~i~i~d~~ 208 (724)
.|.+++|+ ..++..+ .||.+.|=.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99999999 4666655 48887665543
No 182
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.18 E-value=2.4e-09 Score=115.09 Aligned_cols=193 Identities=13% Similarity=0.175 Sum_probs=146.1
Q ss_pred eEE-EEec--CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEe
Q 004914 57 ASC-VAVA--ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFD 131 (724)
Q Consensus 57 i~~-~s~~--~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~ 131 (724)
|++ +.|+ =+.++.|+..|.+.+|++ +++.+.+++++...|+++.-+|-=..++.|..+|+|.+++++.+++ ..++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 555 3443 357899999999999999 7788899999999999999999999999999999999999999775 4677
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-eEeccCCCCeEEEEEe-C-CEEEEE-cCCcEEEEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-QVLHSGEGPVHVVKWR-T-SLIAWA-NDAGVKVYD 206 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-~~l~~~~~~V~~l~~~-~-~~la~~-~d~~i~i~d 206 (724)
... +|++++|..+ +...+++|+..|.+.+|+.. ..+.. .+...|.+.|....|. | .+++++ -|+.+++|-
T Consensus 242 ~d~g~VtslSFrtD----G~p~las~~~~G~m~~wDLe-~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTD----GNPLLASGRSNGDMAFWDLE-KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred ccccceeEEEeccC----CCeeEEeccCCceEEEEEcC-CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 765 9999999988 45678889999999999986 22333 3334688888888888 3 455555 688888886
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
..++.....+-+. ..+|...+.++.+ ..+..+.++ .|++++.+++...
T Consensus 317 fD~~dg~pR~LR~--R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e 367 (910)
T KOG1539|consen 317 FDSGDGVPRLLRS--RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISE 367 (910)
T ss_pred eeCCCCcchheee--ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHH
Confidence 6644322111111 2345556777887 567777766 8998998887644
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=4.9e-10 Score=114.63 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=116.0
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
..+.+|++-|+++.|+.+|.+|+|||+|-.+.|||....+.. .+ .+|. .|.|+.|-|.- +.+.+++|..|..|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceEE
Confidence 467899999999999999999999999999999999875554 33 6677 99999999972 357899999999999
Q ss_pred EEecccCC---------ccceEeccCCCCeEEEEEe--C-C-EEEEEcCCcEEEEEcCCCceEEEec-CCC-----CCCC
Q 004914 164 LNSKKWLG---------YRDQVLHSGEGPVHVVKWR--T-S-LIAWANDAGVKVYDAANDQRITFIE-RPR-----GSPR 224 (724)
Q Consensus 164 l~~~~~~~---------~~~~~l~~~~~~V~~l~~~--~-~-~la~~~d~~i~i~d~~~~~~~~~i~-~~~-----~~~~ 224 (724)
+++..-.. .+......|...|..++.. + + +.+++.||+++-||++.......-. .+. ....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99865211 2233344566777777776 2 2 3344479999999998532111000 000 0000
Q ss_pred CCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 225 PELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 225 ~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
-....+.+.-.+...|++| .|--.++||.+...+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 1111222333577889999 778899999765443
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=118.84 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=85.7
Q ss_pred CCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCC
Q 004914 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDD 114 (724)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~D 114 (724)
.|..+|..-.+.+..+ ||++||++||+.+.||.++|||..... +..++..-+...|++|+|||++|++|++|
T Consensus 281 NPv~~w~~~~g~in~f-------~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEF-------AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred CccceeEeccccccce-------eEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence 4555555545555455 899999999999999999999996554 34455666789999999999999999999
Q ss_pred CCEEEEeccCCceEE-EeCCC-CeeEEEeCCCCCCC
Q 004914 115 GSVVINSLFTDEKMK-FDYHR-PMKAISLDPDYTRK 148 (724)
Q Consensus 115 g~v~iwd~~~~~~~~-~~~~~-~v~~v~~~p~~~~~ 148 (724)
--|.||.+..+++.. -.+|+ .|..|+|+| |+.+
T Consensus 354 DLVtVwSf~erRVVARGqGHkSWVs~VaFDp-ytt~ 388 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQGHKSWVSVVAFDP-YTTS 388 (636)
T ss_pred ceEEEEEeccceEEEeccccccceeeEeecc-cccc
Confidence 999999999877654 57888 999999999 5544
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.14 E-value=1.3e-09 Score=107.94 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=80.2
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC--------C-----Ce----eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL--------G-----NQ----VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~--------~-----~~----~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw 120 (724)
..|+|+|..+|+|+.+|.|.+|-.. . ++ .+.+.+|...|..++|+|++.++++++.|..+++|
T Consensus 71 vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 71 VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 3589999999999999999999764 2 11 25567899999999999999999999999999999
Q ss_pred eccCCceEE-EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCC
Q 004914 121 SLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG 160 (724)
Q Consensus 121 d~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg 160 (724)
|+..|.+.. +..|. .|..++|+|. ++++++-+.|.
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvawDpl-----~qyv~s~s~dr 187 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAWDPL-----NQYVASKSSDR 187 (434)
T ss_pred EeccceeEeeccccccccceeecchh-----hhhhhhhccCc
Confidence 999988764 56666 8888888886 55555555554
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.14 E-value=2.4e-09 Score=111.92 Aligned_cols=191 Identities=15% Similarity=0.190 Sum_probs=128.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecC--CCe-------eEE--E-------------------------cC--Ccc
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFL--GNQ-------VKE--F-------------------------PA--HTA 94 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~--~~~-------~~~--~-------------------------~~--h~~ 94 (724)
+.+.| ++.+|+.+|+|+.|..|.+|+.. |.. ++. | .. ...
T Consensus 54 DtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~ 133 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS 133 (1081)
T ss_pred ceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe
Confidence 44555 67799999999999999999863 221 110 0 00 123
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe---CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD---YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~---~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
+|.+++|..||++++-|-.||+|.+-+-...+...+. +.. +|++++|+|.-.......+++.+...++.++...
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-- 211 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-- 211 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--
Confidence 5666777779999999999999999977664444432 233 9999999998443334677888888888777653
Q ss_pred CccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC
Q 004914 171 GYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG 245 (724)
Q Consensus 171 ~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d 245 (724)
|.....-..-.-.-.|+++. |.++..| +|+.+.+|- +.|-.+.++.. .+.|+..+.. ++++.+++| .|
T Consensus 212 G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~------~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 212 GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE------QDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc------cceeEEEEEEccCCceEEEEEcc
Confidence 32211111111123456665 7776655 899999996 45666665432 3346777776 788999999 99
Q ss_pred CeEEEEEEe
Q 004914 246 TYIKIASIK 254 (724)
Q Consensus 246 ~~i~vw~~~ 254 (724)
|+|-.|++-
T Consensus 285 GTiACyNl~ 293 (1081)
T KOG1538|consen 285 GTIACYNLI 293 (1081)
T ss_pred CeeehhhhH
Confidence 999999874
No 187
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.13 E-value=6.4e-09 Score=105.71 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=139.5
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (724)
+.+..+.+++.-|.+|+..+.|.-=++++.......+|....+.++.+|+...++|++.|+++++|+ ..+...+.....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecC
Confidence 3355566655558899998888877776666667789999999999999999999999999999999 444445555556
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
++.|+.|+|. | .++.|+..|...+.+.. ......++....++++++|+ |.++|.+ .|+.|++|-+..+.
T Consensus 409 ~~~~~~fhps-----g-~va~Gt~~G~w~V~d~e--~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 409 PAECADFHPS-----G-VVAVGTATGRWFVLDTE--TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred ceeEeeccCc-----c-eEEEeeccceEEEEecc--cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 9999999999 6 99999999998887664 23334445558899999999 8999988 59999999998543
Q ss_pred -eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEE
Q 004914 212 -RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIA 251 (724)
Q Consensus 212 -~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw 251 (724)
.........+ .++..+.| .+++.+.+- .|-.|-+|
T Consensus 481 ~~y~r~~k~~g-----s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 481 RKYSRVGKCSG-----SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred cEEEEeeeecC-----ceeEEeeecCCCceEEeccCceEEEEE
Confidence 3333333322 56889999 566666655 45569999
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=6.5e-09 Score=113.06 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=120.5
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEE--eccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVIN--SLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iw--d~~~~~~~~~~~ 132 (724)
+|+|+|+.|+.++.+ ..|++||+.+.....+....+...+++|+|||+.|+.++ .+|.+.|| |+.++....+..
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc
Confidence 699999999887654 479999995443222322223344689999999888765 68876655 666677777766
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEe-cCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAG-GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g-~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~ 208 (724)
+. .+.+++|+|+ ++.++.+ ..+|...+|.....+.....+ .+.+ ....|+ |+.++.+....+.+||+.
T Consensus 290 ~~~~~~~~~wSpD-----G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~ 361 (429)
T PRK01742 290 GAGNNTEPSWSPD-----GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLT 361 (429)
T ss_pred CCCCcCCEEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECC
Confidence 66 7889999999 7766654 467888888765334333333 3333 346677 677777654567779998
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+++........ ......| +++..++.+ .++.+.+|.+..
T Consensus 362 ~g~~~~lt~~~--------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 362 SGSTEVLSSTF--------LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred CCCeEEecCCC--------CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 88654321111 1134567 678888877 778888887754
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.13 E-value=2.3e-09 Score=103.16 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=139.7
Q ss_pred CcCCCccceeccCCCccccCC-C--------ceEEEEecCCEEEEEeCCCeEEEEec--CCCe--eEEE-----cCCccc
Q 004914 34 EEEPRLKYQRMGGSLPSLLAN-D--------AASCVAVAERMIALGTHAGTVHILDF--LGNQ--VKEF-----PAHTAA 95 (724)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~-~--------~i~~~s~~~~~la~g~~dg~I~i~d~--~~~~--~~~~-----~~h~~~ 95 (724)
.++|+.-+...++.....+.. + ...+|+|||..|..| .+..|++||. .|.. +... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 356666666666665554432 1 145699999999555 5678999998 3443 1111 234678
Q ss_pred eeEEEEcCCCC-EEEEEeCCCCEEEEeccCC-ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCC
Q 004914 96 VNDLSFDVDGE-YVGSCSDDGSVVINSLFTD-EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLG 171 (724)
Q Consensus 96 V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~ 171 (724)
|.+++|+|-.. .++.|+...++-|+.-..+ .+..+.+|. .|+.+.|.++ |+.|.+|+. +-.|..|+.+..+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed-----Gn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED-----GNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC-----cCeecccccCCCeEEEEeehhcc
Confidence 89999999655 8899998889989887774 455667777 9999999999 788888864 5679999988666
Q ss_pred ccceEeccCCC-CeEEEEEe----CCEEEEE-cCCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE
Q 004914 172 YRDQVLHSGEG-PVHVVKWR----TSLIAWA-NDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (724)
Q Consensus 172 ~~~~~l~~~~~-~V~~l~~~----~~~la~~-~d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (724)
.....+..|.+ .-..|.|. +++++++ +||.|++||+.+ +.....+.. +...+..++++ --.+++++
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~------~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN------YSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc------ccccccceecCcccceeeec
Confidence 55555555544 44567777 7999999 899999999986 553433222 22334455552 23455555
Q ss_pred eCCeEE
Q 004914 244 WGTYIK 249 (724)
Q Consensus 244 ~d~~i~ 249 (724)
.+..+.
T Consensus 359 sGqr~f 364 (406)
T KOG2919|consen 359 SGQRIF 364 (406)
T ss_pred cCceee
Confidence 655543
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.10 E-value=5.2e-10 Score=110.83 Aligned_cols=149 Identities=26% Similarity=0.309 Sum_probs=119.8
Q ss_pred EEecCC-EEEEEeCCCeEEEEecC----CC---e---eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc-----
Q 004914 60 VAVAER-MIALGTHAGTVHILDFL----GN---Q---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF----- 123 (724)
Q Consensus 60 ~s~~~~-~la~g~~dg~I~i~d~~----~~---~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~----- 123 (724)
|..++. ++|+|+.|..|++|-++ ++ . ...+..|...|+++.|+|+|+.++||+++|.|.+|-..
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 334433 89999999999999872 22 1 24567799999999999999999999999999999765
Q ss_pred ---C-----Cc----eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 124 ---T-----DE----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 124 ---~-----~~----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
+ .+ ...+.+|+ .|..++|+|+ +..+++|+.|..+++|+.. .|.....+..|...|.+++|.
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-----~~~l~s~s~dns~~l~Dv~-~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-----SNFLVSGSVDNSVRLWDVH-AGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred cccchhhhCccceEEEEEecccccchhhhhccCC-----CceeeeeeccceEEEEEec-cceeEeeccccccccceeecc
Confidence 2 11 12356777 9999999999 8999999999999999986 678888888999999999999
Q ss_pred --CCEEEEE-cCCcEEEEEcCCCceEE
Q 004914 191 --TSLIAWA-NDAGVKVYDAANDQRIT 214 (724)
Q Consensus 191 --~~~la~~-~d~~i~i~d~~~~~~~~ 214 (724)
++++++- .|...+.+++...+.+.
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeee
Confidence 5777765 67777777776655444
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.10 E-value=1.9e-09 Score=112.09 Aligned_cols=183 Identities=19% Similarity=0.351 Sum_probs=131.1
Q ss_pred cCCEEEEEeC--CCeEEEEec--CCCe---eEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCceE------
Q 004914 63 AERMIALGTH--AGTVHILDF--LGNQ---VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM------ 128 (724)
Q Consensus 63 ~~~~la~g~~--dg~I~i~d~--~~~~---~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~------ 128 (724)
.+.++|+-.. .|.+-+.-+ .|+. +..+.+|...|+++.|+|-. .+|++||.|..|+||.+..+...
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 3445555432 346666655 2332 45678899999999999954 47899999999999999854322
Q ss_pred -EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
.+.... .|.++.|+|. ..-++..+..|.+++|+.. .++....+.+|...|.+..|+ |.+++++ .|..|+
T Consensus 122 ~~~g~~~~~vE~l~fHpT-----aDgil~s~a~g~v~i~D~s-tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqir 195 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPT-----ADGILASGAHGSVYITDIS-TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIR 195 (1012)
T ss_pred eeecCCceEEEEeecccC-----cCceEEeccCceEEEEEcc-cCceeecccCCchhhhccccccCCceEeeecCCcceE
Confidence 233333 8999999998 4555555566899999886 566777788899999999999 8999998 699999
Q ss_pred EEEcCC-CceEEEecCCCCCCCCCCCCCceeecCC--CeEEEEeC----CeEEEEEEeeC
Q 004914 204 VYDAAN-DQRITFIERPRGSPRPELLLPHLVWQDD--TLLVIGWG----TYIKIASIKTN 256 (724)
Q Consensus 204 i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~~~--~~l~~g~d----~~i~vw~~~~~ 256 (724)
|||.++ ++.+...+.+.+. .-..+.|-.+ +++.+|.+ ..|++||.+.-
T Consensus 196 ifDPRa~~~piQ~te~H~~~-----rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f 250 (1012)
T KOG1445|consen 196 IFDPRASMEPIQTTEGHGGM-----RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKF 250 (1012)
T ss_pred EeCCccCCCccccccccccc-----hhheeeeccchhhhhhcccchhhheeeeeeecccc
Confidence 999984 5566665555432 2446778433 56666743 34888988653
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.09 E-value=2.7e-10 Score=114.50 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=120.3
Q ss_pred eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
++.++.| ..|..+.|-|---+|++++..|.++.-|+.+|++. .+.... .+..++-+|- +..+-+|...|+|.
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-----NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-----NAVIHLGHSNGTVS 276 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-----cceEEEcCCCceEE
Confidence 3334433 35778888888888999999999999999998765 344444 7888888998 67889999999999
Q ss_pred EEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeE
Q 004914 164 LNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLL 240 (724)
Q Consensus 164 l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l 240 (724)
+|+.. .......+-.|.++|.+|++. |.+++++ -|..++|||++.-..+.++..+. ....+++++..+|
T Consensus 277 lWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~-------~a~~ls~SqkglL 348 (545)
T KOG1272|consen 277 LWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH-------PASNLSLSQKGLL 348 (545)
T ss_pred ecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC-------Cccccccccccce
Confidence 99875 345555567799999999999 8999888 69999999999766555443322 2345677788899
Q ss_pred EEEeCCeEEEEEE
Q 004914 241 VIGWGTYIKIASI 253 (724)
Q Consensus 241 ~~g~d~~i~vw~~ 253 (724)
++|+++.|.+|.=
T Consensus 349 A~~~G~~v~iw~d 361 (545)
T KOG1272|consen 349 ALSYGDHVQIWKD 361 (545)
T ss_pred eeecCCeeeeehh
Confidence 9999999999953
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=5.3e-09 Score=113.52 Aligned_cols=88 Identities=28% Similarity=0.410 Sum_probs=69.7
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCC-----CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLG-----NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD 131 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~ 131 (724)
+.+++|+++++|+|..||.|.+|.-.+ ...+.++-|...|++++|+++|.+|.|||..|.+.+|.+.+++..-+.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 355889999999999999999997644 124678889999999999999999999999999999999886632232
Q ss_pred CCC-CeeEEEeCCC
Q 004914 132 YHR-PMKAISLDPD 144 (724)
Q Consensus 132 ~~~-~v~~v~~~p~ 144 (724)
.-. +|..+.++|+
T Consensus 290 RLgs~I~~i~vS~d 303 (792)
T KOG1963|consen 290 RLGSPILHIVVSPD 303 (792)
T ss_pred ccCCeeEEEEEcCC
Confidence 222 5555555554
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.06 E-value=8.6e-10 Score=112.58 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=103.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCe-----------------------------------------eEEEcC
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQ-----------------------------------------VKEFPA 91 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~-----------------------------------------~~~~~~ 91 (724)
++++| |+++|.-+++.+.||.|++|+.+|-. +..+++
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred hhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence 33555 99999999999999999999865421 124578
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
|.+-|.+++|++..+.++|||+|-..+|||..+..+..-..|. +|++|+|.|+ ..++.|+.. +.++
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd------~~~~v~S~n-t~R~------ 251 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE------KDYLLWSYN-TARF------ 251 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc------cceeeeeee-eeee------
Confidence 9999999999999999999999999999999988887777888 9999999999 778888763 3432
Q ss_pred CccceEeccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 171 GYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 171 ~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
-....|.|..++|+ |.-++++ +.|.+
T Consensus 252 ------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 252 ------SSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ------cCCCccceEEEEEcCCCceeeccccCceE
Confidence 12246789999999 7777777 44543
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=2.1e-08 Score=95.84 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=100.6
Q ss_pred EEEEecCCEEEEEeC----------CCeEEEEec--CCCeeEEEcC-CccceeEEEEcCCCCEEEEE--eCCCCEEEEec
Q 004914 58 SCVAVAERMIALGTH----------AGTVHILDF--LGNQVKEFPA-HTAAVNDLSFDVDGEYVGSC--SDDGSVVINSL 122 (724)
Q Consensus 58 ~~~s~~~~~la~g~~----------dg~I~i~d~--~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~--~~Dg~v~iwd~ 122 (724)
..|++.|+.|++-.. -|...+|-+ .+..+..+.- ..++|.+++|+|+|+.++.+ ..++.|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 358888887665433 123444444 4444544443 34579999999999986554 46789999999
Q ss_pred cCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecC---CCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE
Q 004914 123 FTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 123 ~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~ 197 (724)
+...+..+. ..+++.+.|+|+ |+++++|+. .|.+.+|+.. ....... .....++.+.|+ |++++++
T Consensus 91 ~~~~i~~~~-~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~--~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 91 KGKKIFSFG-TQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVR-KKKKIST--FEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred cccEeEeec-CCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECC-CCEEeec--cccCcEEEEEEcCCCCEEEEE
Confidence 755555543 238889999999 899998764 4679999886 2222222 223347899999 7887766
Q ss_pred -c------CCcEEEEEcCCCceEEE
Q 004914 198 -N------DAGVKVYDAANDQRITF 215 (724)
Q Consensus 198 -~------d~~i~i~d~~~~~~~~~ 215 (724)
+ |++++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 2 7889999985 555544
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.4e-09 Score=110.43 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=120.5
Q ss_pred CcCCCccceeccCCCccccCCCceEEEEecCCEEEEEeCCCeEEEEecC--CC---------eeEEEcCCccceeEEEEc
Q 004914 34 EEEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFL--GN---------QVKEFPAHTAAVNDLSFD 102 (724)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~--~~---------~~~~~~~h~~~V~~l~~s 102 (724)
+-+|.+.|..|.+.+... |+..++..+.+|+.||+|+.|++. +. ....+.||++.|+.++++
T Consensus 333 ~~epi~tfraH~gPVl~v-------~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s 405 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCV-------VVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS 405 (577)
T ss_pred ceeeeEEEecccCceEEE-------EecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec
Confidence 445555555555554333 577789999999999999999662 11 135678999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEeccCCceEEE---------------------------------------------e-----C
Q 004914 103 VDGEYVGSCSDDGSVVINSLFTDEKMKF---------------------------------------------D-----Y 132 (724)
Q Consensus 103 ~~g~~l~s~~~Dg~v~iwd~~~~~~~~~---------------------------------------------~-----~ 132 (724)
+....|++|+.||+++.|+.......++ . .
T Consensus 406 ~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 406 STKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred ccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 9999999999999999998654221100 0 0
Q ss_pred C---CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 133 H---RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 133 ~---~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
. ..+.-|.++|. ....+++..|+.|++++.. .+........|...++++++. |.++..+ .|+.+++|.
T Consensus 486 ~~~~~~in~vVs~~~-----~~~~~~~hed~~Ir~~dn~-~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPT-----ADITFTAHEDRSIRFFDNK-TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccCccceEEecCC-----CCeeEecccCCceeccccc-ccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 0 13455667776 5778888888899887653 344443444577789999988 6666666 799999999
Q ss_pred cCCCceEEE
Q 004914 207 AANDQRITF 215 (724)
Q Consensus 207 ~~~~~~~~~ 215 (724)
+....++..
T Consensus 560 ld~k~~~~e 568 (577)
T KOG0642|consen 560 LDVKTCVLE 568 (577)
T ss_pred ccchheeec
Confidence 987666543
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.7e-08 Score=99.31 Aligned_cols=147 Identities=13% Similarity=0.180 Sum_probs=112.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC-------CeeEEE-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG-------NQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~-------~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
-|+.++++||+|+.|..+++|+... +++... ..|...|.|++|+...+++.+|+.+|+|...|+.+.+.+.+
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence 4777899999999999999999732 233322 33668999999999999999999999999999999776543
Q ss_pred -e--CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--EeccCCCCeEEEEEe---CCEEEEE-cCC
Q 004914 131 -D--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSGEGPVHVVKWR---TSLIAWA-NDA 200 (724)
Q Consensus 131 -~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~~~~~~V~~l~~~---~~~la~~-~d~ 200 (724)
. ..+ .|..+..+|. .+.|++.+.+|.|.+|+.+-...... .+........++.|+ +.+|++. ..+
T Consensus 143 ~~~~~~~~~VY~m~~~P~-----DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPT-----DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred ecccCcccceeecccCCC-----CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence 2 223 8999999998 78999999999999998763322222 222233456677888 5788877 578
Q ss_pred cEEEEEcCCC
Q 004914 201 GVKVYDAAND 210 (724)
Q Consensus 201 ~i~i~d~~~~ 210 (724)
++.+||.+..
T Consensus 218 G~~~~D~R~~ 227 (609)
T KOG4227|consen 218 GPNVFDRRMQ 227 (609)
T ss_pred CCCceeeccc
Confidence 8999998743
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.04 E-value=1.8e-08 Score=112.82 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=128.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecC---CC--e---eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--Cc---
Q 004914 60 VAVAERMIALGTHAGTVHILDFL---GN--Q---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DE--- 126 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~---~~--~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~--- 126 (724)
.++++.++++|+.||+|++|+.. |. . ..++..-..++.++.+.+.|+.+|.++.||.|.+.++.. ..
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence 34466899999999999999982 22 1 233444567899999999999999999999999887653 10
Q ss_pred --------------eE-----------------------------------EE---eCCCCeeEEEeCCCCCCCCCCEEE
Q 004914 127 --------------KM-----------------------------------KF---DYHRPMKAISLDPDYTRKMSRRFV 154 (724)
Q Consensus 127 --------------~~-----------------------------------~~---~~~~~v~~v~~~p~~~~~~~~~l~ 154 (724)
+. ++ ..|+.|++++.+|. +.+++
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~-----~~Wlv 1211 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW-----CNWLV 1211 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC-----ceEEE
Confidence 00 00 02337889999999 88999
Q ss_pred EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---C--CEEEEE---cCCcEEEEEcCCCceEEEecCCCCCCCCC
Q 004914 155 AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T--SLIAWA---NDAGVKVYDAANDQRITFIERPRGSPRPE 226 (724)
Q Consensus 155 ~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~--~~la~~---~d~~i~i~d~~~~~~~~~i~~~~~~~~~~ 226 (724)
+|+..|.+.+|+.++.-.....-+.+..+|..+..+ + ...+++ +.+.|.+|++.+|.+...+....+.+...
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred EecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 999999999999986432222234456778888777 3 343333 35679999999987666554431111100
Q ss_pred -----------CCCC--ceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 227 -----------LLLP--HLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 227 -----------~~~~--~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
...+ ..+. ..+..+.+| .|+.|+.||.....
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 0000 1111 234455555 99999999987644
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.5e-08 Score=98.57 Aligned_cols=153 Identities=14% Similarity=0.323 Sum_probs=112.0
Q ss_pred cCCEEEEEeCCCeEEEEecCC-Ce--eEEEcCCc-cceeEEEEcCCCCEEEEEeC----CCCEEEEeccCCce-E-E-Ee
Q 004914 63 AERMIALGTHAGTVHILDFLG-NQ--VKEFPAHT-AAVNDLSFDVDGEYVGSCSD----DGSVVINSLFTDEK-M-K-FD 131 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~-~~--~~~~~~h~-~~V~~l~~s~~g~~l~s~~~----Dg~v~iwd~~~~~~-~-~-~~ 131 (724)
.+..+.+|+.||+|++||+.. .. ...+.+|. .+..+++.+..++.+++|.. |-.|.+||++..+. . . ..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 456788999999999999932 22 34455665 46677776667777887753 56799999998443 2 2 46
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE--eccCCCCeEEEEEeC----CEEEEEcCCcEEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV--LHSGEGPVHVVKWRT----SLIAWANDAGVKV 204 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~--l~~~~~~V~~l~~~~----~~la~~~d~~i~i 204 (724)
.|. -|+++.|+|. +.+.+++|+.||-|.+++..-+...... .-.+...|..+.|.+ ++.+.+...+..+
T Consensus 163 SH~DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred hccCcceeEEecCC----CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeE
Confidence 677 9999999998 6799999999999999987544322222 223556799999993 4555557899999
Q ss_pred EEcCCCceEEEecCC
Q 004914 205 YDAANDQRITFIERP 219 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~ 219 (724)
|++..+.....++.+
T Consensus 239 ~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 239 YELEDGSEETWLENP 253 (376)
T ss_pred EEccCCChhhcccCc
Confidence 999988766655554
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.00 E-value=9.1e-09 Score=97.75 Aligned_cols=186 Identities=12% Similarity=0.175 Sum_probs=130.7
Q ss_pred EEEecC-----CEEEEEeCCCeEEEEecCC--Cee--------EEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEec
Q 004914 59 CVAVAE-----RMIALGTHAGTVHILDFLG--NQV--------KEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 59 ~~s~~~-----~~la~g~~dg~I~i~d~~~--~~~--------~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~ 122 (724)
-|.|+. ..||+ .+..+++|.... ..+ ..-..+.+++++..|+. +.++|.++|-|-+..|||+
T Consensus 103 ~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred EecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 356653 34544 445899998842 111 11123567999999986 5678999999999999999
Q ss_pred cCCce----EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC---CCCeEEEEEe---C
Q 004914 123 FTDEK----MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG---EGPVHVVKWR---T 191 (724)
Q Consensus 123 ~~~~~----~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~---~~~V~~l~~~---~ 191 (724)
.++.. ..+-.|. .|..|+|... +.+.|++.+.||.+++|+.+-... .+++... ..+...++|+ +
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~~----s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLKG----SRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred eeccccceeeEEEecCcceeEEEeccC----ccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCc
Confidence 98632 2355666 9999999986 458999999999999999874333 3333332 4578889999 5
Q ss_pred CEEEEE--cCCcEEEEEcCCC-ceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 192 SLIAWA--NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 192 ~~la~~--~d~~i~i~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++|+- ....|.|.|++.. .++..+..+ ...+..++| .....++++ .|..+-+||+....
T Consensus 256 nymATf~~dS~~V~iLDiR~P~tpva~L~~H------~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPCTPVARLRNH------QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCCcceehhhcC------cccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 777765 4567999999853 445554444 445888999 455667766 55669999998643
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.6e-08 Score=110.02 Aligned_cols=171 Identities=17% Similarity=0.189 Sum_probs=118.2
Q ss_pred CCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCC
Q 004914 73 AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRK 148 (724)
Q Consensus 73 dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~ 148 (724)
+..|.+||.+|...+.+..|...+.+.+|+|+|+.|+.++.+ ..|++||+.++....+.... ...+++|+|+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD---- 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD---- 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC----
Confidence 468999999887777778888899999999999999987754 36999999887654443333 4557899999
Q ss_pred CCCEEEEe-cCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCC-ceEEEecCCCCC
Q 004914 149 MSRRFVAG-GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAND-QRITFIERPRGS 222 (724)
Q Consensus 149 ~~~~l~~g-~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~-~~~~~i~~~~~~ 222 (724)
|+.++++ +.+|.+.+|..+..+.....+..+.+.+.+..|+ |+.++.+ .++...||++... .....+ .+.
T Consensus 259 -G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-- 334 (429)
T PRK01742 259 -GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-- 334 (429)
T ss_pred -CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--
Confidence 7877765 4688877775543444555566666778889998 5655544 3677888876532 222222 111
Q ss_pred CCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 223 PRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 223 ~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
. ....| ++++.++.+..+.+.+||+.++.
T Consensus 335 ----~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~ 364 (429)
T PRK01742 335 ----G--YSAQISADGKTLVMINGDNVVKQDLTSGS 364 (429)
T ss_pred ----C--CCccCCCCCCEEEEEcCCCEEEEECCCCC
Confidence 1 13457 67888877755567778886643
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1.5e-08 Score=111.50 Aligned_cols=197 Identities=18% Similarity=0.205 Sum_probs=132.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCCe-eEEEc-CCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCC----ce
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFP-AHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTD----EK 127 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~-~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~----~~ 127 (724)
+.++.|......|.+++.-..|+|||..... +..+. +....|++++-+. .|+.|+.|..||.|++||.+.. .+
T Consensus 1168 ~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1168 GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred CeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 4466676655555555557899999996544 33332 2445677776553 4689999999999999999873 23
Q ss_pred EEEeCCC---CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-CccceEeccCC--C-CeEEEEEe--CCEEEEEc
Q 004914 128 MKFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-GYRDQVLHSGE--G-PVHVVKWR--TSLIAWAN 198 (724)
Q Consensus 128 ~~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~~~~~~l~~~~--~-~V~~l~~~--~~~la~~~ 198 (724)
.....|. +|..+.+.+. +-..+++|+.+|.|.+|+.+-. ......+..+. | ..+++..+ ..++|+|+
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~----G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQ----GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eeecccCCcccceeEEeecC----CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 4555565 5999999886 2246999999999999998742 12222222222 4 48888888 58999997
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCC-CCCCCCceeec-CCCeEEEE-eCCeEEEEEEeeC
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPR-PELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+.|+||++... .+..+....+..+ ....+.++.|+ -.-.+++| .|..|.||....+
T Consensus 1324 ~q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1324 AQLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 799999998644 3433332222221 22235678884 44566777 8888999976543
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=104.73 Aligned_cols=132 Identities=19% Similarity=0.296 Sum_probs=100.7
Q ss_pred CCceEE--EEec-CCEEEEEeCCCeEEEEecC---------------CCe--eE------------EEcCCccceeEEEE
Q 004914 54 NDAASC--VAVA-ERMIALGTHAGTVHILDFL---------------GNQ--VK------------EFPAHTAAVNDLSF 101 (724)
Q Consensus 54 ~~~i~~--~s~~-~~~la~g~~dg~I~i~d~~---------------~~~--~~------------~~~~h~~~V~~l~~ 101 (724)
+.+++| |-+. ...+.+.-.+|.++++|.. +.. +. .+.-..+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 356777 5554 4566677888999998641 000 11 11223457899999
Q ss_pred cCCCCEEEEEeCCCCEEEEeccCCceEE-EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc
Q 004914 102 DVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS 179 (724)
Q Consensus 102 s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~ 179 (724)
+|||++||+.|.||.++|+|..+.++.- ++..- ...||+|+|| |+++++|+.|--|.+|... .++.+..-++
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-----GKyIvtGGEDDLVtVwSf~-erRVVARGqG 372 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-----GKYIVTGGEDDLVTVWSFE-ERRVVARGQG 372 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-----ccEEEecCCcceEEEEEec-cceEEEeccc
Confidence 9999999999999999999999866542 33333 7899999999 9999999999999999875 4555566678
Q ss_pred CCCCeEEEEEeC
Q 004914 180 GEGPVHVVKWRT 191 (724)
Q Consensus 180 ~~~~V~~l~~~~ 191 (724)
|++.|..++|.+
T Consensus 373 HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 HKSWVSVVAFDP 384 (636)
T ss_pred cccceeeEeecc
Confidence 999999999996
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.97 E-value=2.1e-08 Score=112.28 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=121.4
Q ss_pred EecCCCeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccC--Cc------eEEEeCCC-CeeEEEeCCCCCCC
Q 004914 79 LDFLGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT--DE------KMKFDYHR-PMKAISLDPDYTRK 148 (724)
Q Consensus 79 ~d~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~--~~------~~~~~~~~-~v~~v~~~p~~~~~ 148 (724)
|+..|..+..+..|+..|..++.++.. .+++|||.||+|++|+++. +. ..++...+ ++.++...+.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---- 1109 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC----
Confidence 777888888889999999999987765 8999999999999999876 22 12344233 8999999998
Q ss_pred CCCEEEEecCCCeEEEEecccC-Ccc-----ceEecc-CCCCeEEE-EEe---CC-EEEEE-cCCcEEEEEcCCCceEEE
Q 004914 149 MSRRFVAGGLAGHLYLNSKKWL-GYR-----DQVLHS-GEGPVHVV-KWR---TS-LIAWA-NDAGVKVYDAANDQRITF 215 (724)
Q Consensus 149 ~~~~l~~g~~dg~v~l~~~~~~-~~~-----~~~l~~-~~~~V~~l-~~~---~~-~la~~-~d~~i~i~d~~~~~~~~~ 215 (724)
+..+|+|+.||.|.+...+-. ... ...... ..|.+..+ +|. +. .++.+ .-+.|..||+++......
T Consensus 1110 -~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1110 -GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred -CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 899999999999998866531 111 111111 23444444 233 33 55555 578899999998776665
Q ss_pred ecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 216 IERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
++.+. .|+ .+.+++. +.+..+++| ..|.+-+||++-+...
T Consensus 1189 lk~~~---~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1189 LKNQL---RHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred hhcCc---ccc-ceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence 54432 222 3555555 566789999 8999999999977654
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.97 E-value=4.5e-09 Score=98.50 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=98.9
Q ss_pred EEEEEeCCCCEEEEeccCCce-----------EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc
Q 004914 107 YVGSCSDDGSVVINSLFTDEK-----------MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~-----------~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (724)
+++.|.++|.|.+||+.++.. .....|. +|.++.+.+.+ ..=++|+.+-.+..|+..|.....
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-----~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-----DRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-----cCCcCCCccccceeeeeccccCcc
Confidence 366788999999999998532 2334566 99999998873 344778888889999888763221
Q ss_pred e---EeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCC
Q 004914 175 Q---VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGT 246 (724)
Q Consensus 175 ~---~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~ 246 (724)
. .+.-..-.|.++... ++++|++ .|+.||+|+.++..++..+..+.. .+.+++|+ +...++.+ .|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa------gvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA------GVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc------ceeEEEeCCCCchhhhccCCc
Confidence 1 111112235555555 7899988 799999999999999988766653 47789994 44777777 899
Q ss_pred eEEEEEE
Q 004914 247 YIKIASI 253 (724)
Q Consensus 247 ~i~vw~~ 253 (724)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 206
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.97 E-value=5.5e-09 Score=110.16 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=122.1
Q ss_pred eEEEcCCccceeEEEEcCCCCEEEEEeCCC-----CEEEEeccC-CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC
Q 004914 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL 158 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~ 158 (724)
++.+-+|...|.+++.+|+|+.+||+.... .|++|+..+ .+...+.+|+ .|+.++|+|+ ++++++.+.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd-----g~~LLsvsR 592 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD-----GRYLLSVSR 592 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC-----CcEEEEeec
Confidence 345678999999999999999999997654 488999988 5556799999 9999999999 899999999
Q ss_pred CCeEEEEecccCC---ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC--ceEEEecCCCCCCCCCCCCC
Q 004914 159 AGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND--QRITFIERPRGSPRPELLLP 230 (724)
Q Consensus 159 dg~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~--~~~~~i~~~~~~~~~~~~~~ 230 (724)
|.++.+|...-+. ......+.|..-|+...|+ +.+++++ .|.+|++|..... +.+..+. ....+..+.
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a----~~~~~~aVT 668 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA----CLKFSLAVT 668 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc----hhccCCcee
Confidence 9999999764222 2233366788889999999 4557776 6999999998876 4433321 222333455
Q ss_pred ceeec------CCCeEEEE-eCCeEEEEEEe
Q 004914 231 HLVWQ------DDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 231 ~l~~~------~~~~l~~g-~d~~i~vw~~~ 254 (724)
.++|. .+..+++| ..|.|.+|...
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecc
Confidence 55551 34478899 99999999865
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=7.8e-09 Score=106.05 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=131.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEE-cCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCCc--------
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEF-PAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDE-------- 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~-~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~-------- 126 (724)
.|+.+|.+|++|+.|-.+.|||. .-+.+..+ .+|.+.|.++.|-|. .+.++||..|..|+++|+...+
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 58889999999999999999999 44444444 679999999999884 5689999999999999998511
Q ss_pred ---eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc------eEe---ccCCCCeEEEEEe---
Q 004914 127 ---KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD------QVL---HSGEGPVHVVKWR--- 190 (724)
Q Consensus 127 ---~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~------~~l---~~~~~~V~~l~~~--- 190 (724)
...+..|. .|..++..|+ +...|-+++.||+++-++.+-.-... ..+ ...--...++..+
T Consensus 137 ~~~~~~~~cht~rVKria~~p~----~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r 212 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPN----GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR 212 (758)
T ss_pred cchhhhhhhhhhhhhheecCCC----CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCC
Confidence 12345666 8899999998 35899999999999998876311110 000 0111223455555
Q ss_pred CCEEEEE-cCCcEEEEEcCCC--------c----------eEEEecCCC--CCCC-CCCCC---Cceee-cCCCeEEEE-
Q 004914 191 TSLIAWA-NDAGVKVYDAAND--------Q----------RITFIERPR--GSPR-PELLL---PHLVW-QDDTLLVIG- 243 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~--------~----------~~~~i~~~~--~~~~-~~~~~---~~l~~-~~~~~l~~g- 243 (724)
+.++++| +|--.++||.+.. . ++..+.... ...+ ....+ ..++| ++|.-|++.
T Consensus 213 p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~ 292 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW 292 (758)
T ss_pred CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEee
Confidence 5778777 7888999995421 1 111111000 0000 11122 23445 567777777
Q ss_pred eCCeEEEEEEeeCCCC
Q 004914 244 WGTYIKIASIKTNQSN 259 (724)
Q Consensus 244 ~d~~i~vw~~~~~~~~ 259 (724)
.+..|+++|+..+++.
T Consensus 293 ~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 293 GGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCeEEEEEeecCCCCc
Confidence 5567999999887653
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.95 E-value=2.2e-07 Score=91.51 Aligned_cols=187 Identities=12% Similarity=0.187 Sum_probs=130.7
Q ss_pred eEEEEecCCEEEEEeCC--CeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 57 ASCVAVAERMIALGTHA--GTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~d--g~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
|.-+-+...++|+.+.+ ..+++++.. +..+..+. ...+|.++.++ .++|+.+-.+ .|.|||+.+-++. ++..
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIET 124 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhc
Confidence 33444556666665543 347777774 33344433 33478888876 4466666655 4999999985554 3432
Q ss_pred ---CC-CeeEEEeCCCCCCCCCCEEEEe--cCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCC--cE
Q 004914 133 ---HR-PMKAISLDPDYTRKMSRRFVAG--GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDA--GV 202 (724)
Q Consensus 133 ---~~-~v~~v~~~p~~~~~~~~~l~~g--~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~--~i 202 (724)
+. .+.++++++. +.+++.- ...|.|.+|+.. +-.....+..|++++.+++|+ |.++|++++. .|
T Consensus 125 ~~~n~~gl~AlS~n~~-----n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNA-----NCYLAYPGSTTSGDVVLFDTI-NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred cCCCccceEeeccCCC-----CceEEecCCCCCceEEEEEcc-cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 22 4555555554 4566653 346889999885 557788889999999999999 8999999754 38
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|+|.+.+|+.+..+.+... ...+.+++| .++++|++. ..++|++|.+....
T Consensus 199 RVf~v~~G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCccEeeeeeCCce----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999988877643 234678899 567777666 88899999998765
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=116.51 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=91.4
Q ss_pred CceEEEEe--cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE
Q 004914 55 DAASCVAV--AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (724)
Q Consensus 55 ~~i~~~s~--~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (724)
.+|.|... .|.++++|+.|..++||.. ++.+....+||.+.|++++.+.+..+++++|.|..|++|-+.++... .+
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL 270 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH
Confidence 55778555 5789999999999999998 56667889999999999999999999999999999999999997654 57
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
.+|. .|++++|+|- .+.+.||++++|+-+|
T Consensus 271 rghtgavtaiafsP~---------~sss~dgt~~~wd~r~ 301 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSPR---------ASSSDDGTCRIWDARL 301 (1113)
T ss_pred hccccceeeeccCcc---------ccCCCCCceEeccccc
Confidence 8888 9999999997 2667888999887554
No 210
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=102.15 Aligned_cols=184 Identities=20% Similarity=0.355 Sum_probs=133.3
Q ss_pred EecCC-EEEEEeC-CCeEEEEecCC--CeeEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccCCc-eEEEeCCC
Q 004914 61 AVAER-MIALGTH-AGTVHILDFLG--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDE-KMKFDYHR 134 (724)
Q Consensus 61 s~~~~-~la~g~~-dg~I~i~d~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~-~~~~~~~~ 134 (724)
++++. .++..+. ++.+.+|+..+ .....+..|...|.+++|+|++..+++++. |+.+++|+...+. ...+..|.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence 55666 4444344 89999999965 667888999999999999999998888886 9999999999744 44566677
Q ss_pred -CeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccce-EeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 135 -PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQ-VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~-~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
.|.+++|+|+ +. .+++++.|+.+.+|+.. .+.... .+..|...+ ...|+ +.+++++ .|+.+++|+..
T Consensus 199 ~~v~~~~~~~~-----~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 199 DPVSSLAFSPD-----GGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred CceEEEEEcCC-----cceEEEEecCCCcEEEEECC-CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 9999999988 55 55555999999999654 344444 456666553 22566 5566655 79999999998
Q ss_pred CCce-EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 209 NDQR-ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 209 ~~~~-~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.... ...+. .+...+.++.| +++..++++ .++.+.+|+.....
T Consensus 272 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 272 SSSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCCcEEEEEe------cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 6664 33331 12334666677 446666667 67789999776544
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.6e-07 Score=102.44 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=114.1
Q ss_pred EEEecCCEEEEEeC---CCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCC--EEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTH---AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGS--VVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~---dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~--v~iwd~~~~~~~~~~~ 132 (724)
+|+|+|+.|+..+. ++.|++||+.+.....+..+.+.+.+.+|+|+|+.|+ +.+.+|. |.+||+.++....+..
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence 48999999888764 4689999996555556666777788899999999875 5566665 7777888888777766
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC---CcEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND---AGVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d---~~i~i 204 (724)
+. ...+.+|+|+ ++.++..+ .+|...+|.....+.....+..+.+.+....|+ |+.|+.. .+ ..|.+
T Consensus 288 ~~~~~~~~~~spD-----G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 288 SPAIDTSPSYSPD-----GSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred CCCccCceeEcCC-----CCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEE
Confidence 66 6778999999 77777665 445433443333344444454445566678888 6777655 32 25778
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
||..++.. ..+.... ......| ++++.++..
T Consensus 363 ~d~~~~~~-~~lt~~~-------~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 363 MKPDGSGE-RILTSGF-------LVEGPTWAPNGRVIMFF 394 (435)
T ss_pred EECCCCce-EeccCCC-------CCCCCeECCCCCEEEEE
Confidence 88765543 2222111 1345678 577777654
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.4e-08 Score=103.28 Aligned_cols=171 Identities=14% Similarity=0.259 Sum_probs=127.1
Q ss_pred EEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE------eCC----C
Q 004914 67 IALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF------DYH----R 134 (724)
Q Consensus 67 la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~------~~~----~ 134 (724)
|.+|+....|+-+++ .|..+..+....+.++++.+++...+|++|+.+|.|-.||.++... .++ +.+ .
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 445555567888899 6777888888889999999999999999999999999999987432 222 111 1
Q ss_pred --CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe--ccCCCCeEEEEEe----CCEEEEEcCCcEEEEE
Q 004914 135 --PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL--HSGEGPVHVVKWR----TSLIAWANDAGVKVYD 206 (724)
Q Consensus 135 --~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l--~~~~~~V~~l~~~----~~~la~~~d~~i~i~d 206 (724)
.|+++.|+.+ |-.+++|+.+|.+.+|+.+- .+...+ +...-||..+.|. +..+++.....++|||
T Consensus 228 ~~svTal~F~d~-----gL~~aVGts~G~v~iyDLRa--~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 228 APSVTALKFRDD-----GLHVAVGTSTGSVLIYDLRA--SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred cCcceEEEecCC-----ceeEEeeccCCcEEEEEccc--CCceeecccCCccceeeecccccCCCceEEecchHHhhhcc
Confidence 5999999998 89999999999999999873 222223 3346789999997 3566666778899999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEE
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIA 251 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw 251 (724)
-.+|+....++.... +..+|+ +++.++.++ .+..+..|
T Consensus 301 ~~~Gk~~asiEpt~~-------lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 301 ECTGKPMASIEPTSD-------LNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cccCCceeeccccCC-------cCceeeecCCceEEEecCCCcceeE
Confidence 999998887654432 334444 666777777 44444433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=8.1e-08 Score=94.13 Aligned_cols=142 Identities=22% Similarity=0.317 Sum_probs=103.7
Q ss_pred eEE--EEe-cCCEEEEEeCCCeEEEEecC--CCe-------------eEEEcCCccceeEEEEcCCCCEEEEEeC-CCCE
Q 004914 57 ASC--VAV-AERMIALGTHAGTVHILDFL--GNQ-------------VKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSV 117 (724)
Q Consensus 57 i~~--~s~-~~~~la~g~~dg~I~i~d~~--~~~-------------~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v 117 (724)
++| |-| .++.+++|+..| |.+|..+ +.. +..-.+| .+|+++.|++||..+++++- |..|
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 556 445 456888998876 8899762 211 1122345 58999999999999999875 6789
Q ss_pred EEEeccCCceEEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec--ccCCccceEeccCCCCeEEEEEe--C
Q 004914 118 VINSLFTDEKMKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK--KWLGYRDQVLHSGEGPVHVVKWR--T 191 (724)
Q Consensus 118 ~iwd~~~~~~~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~--~~~~~~~~~l~~~~~~V~~l~~~--~ 191 (724)
.|||..++....+...+ .+.-+.|+|+ +..|.+++-|+..++|+. .|...+. ....+.|.+..|+ |
T Consensus 221 ~iWdpdtg~~~pL~~~glgg~slLkwSPd-----gd~lfaAt~davfrlw~e~q~wt~erw---~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPD-----GDVLFAATCDAVFRLWQENQSWTKERW---ILGSGRVQTACWSPCG 292 (445)
T ss_pred EEEcCCCCCcccccccCCCceeeEEEcCC-----CCEEEEecccceeeeehhcccceecce---eccCCceeeeeecCCC
Confidence 99999998877665333 8889999999 899999999999999943 3332222 2245589999999 7
Q ss_pred CEEEEEcCCcEEEEEcC
Q 004914 192 SLIAWANDAGVKVYDAA 208 (724)
Q Consensus 192 ~~la~~~d~~i~i~d~~ 208 (724)
.++..+..+.-++|.+.
T Consensus 293 sfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSLT 309 (445)
T ss_pred CEEEEEEcCCceEEEEe
Confidence 77776655666777664
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.7e-07 Score=101.80 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=118.7
Q ss_pred EEEEecCCEEEEEeC---CCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEE-eCCC--CEEEEeccCCceEEEe
Q 004914 58 SCVAVAERMIALGTH---AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSC-SDDG--SVVINSLFTDEKMKFD 131 (724)
Q Consensus 58 ~~~s~~~~~la~g~~---dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-~~Dg--~v~iwd~~~~~~~~~~ 131 (724)
-+|+|+|+.|+..+. +..|++|++.+.....+....+.+..+.|+|||+.|+.. +.+| .|.+||+.++....+.
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc
Confidence 369999999887543 457999999655444444444445678999999988765 4455 4888999988877766
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC---CcEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND---AGVK 203 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d---~~i~ 203 (724)
.+. .+...+|+|+ ++.++..+. +|...+|.....+.....+....+......|+ |+.++.. .+ ..+.
T Consensus 284 ~~~~~~~~~~wSPD-----G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 284 DGRSNNTEPTWFPD-----SQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred CCCCCcCceEECCC-----CCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence 555 7889999999 787766654 45666665443444444444444445667787 6676654 32 3488
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCe---EEEEEEe
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTY---IKIASIK 254 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~---i~vw~~~ 254 (724)
+||+.++.... +.... ......| +++..++.+ .++. +.++++.
T Consensus 359 ~~dl~~g~~~~-Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 359 KQDLATGGVQV-LTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEECCCCCeEE-eCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 89998876442 22111 1224557 678877776 4433 5566553
No 215
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=94.89 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=115.5
Q ss_pred CceEEEEe---cCC--EEEEEeCCCeEEEEecCC-Ce----------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEE
Q 004914 55 DAASCVAV---AER--MIALGTHAGTVHILDFLG-NQ----------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (724)
Q Consensus 55 ~~i~~~s~---~~~--~la~g~~dg~I~i~d~~~-~~----------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (724)
++++|... ++. +++.|..+|.+.+||++. .. ......|..+|.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 66777663 233 567888999999999943 22 233456999999999998766667888888999
Q ss_pred EEeccC--CceE---EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC-
Q 004914 119 INSLFT--DEKM---KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT- 191 (724)
Q Consensus 119 iwd~~~--~~~~---~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~- 191 (724)
.|++.. +.+. ...... .|..+.+-|+ ++.+++++.||.+++|+-+ ......++.-|.+.|.+++|++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD-----~KIlATAGWD~RiRVyswr-tl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD-----GKILATAGWDHRIRVYSWR-TLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccC-----CcEEeecccCCcEEEEEec-cCCchhhhhhhhcceeEEEeCCC
Confidence 999875 3322 233334 8899999999 8999999999999999876 5677888889999999999993
Q ss_pred -CEEEEE-cCCcEEEEEc
Q 004914 192 -SLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 192 -~~la~~-~d~~i~i~d~ 207 (724)
.++|.+ .|+.|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 677766 6999999986
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=5.1e-07 Score=98.60 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=114.4
Q ss_pred eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC---CCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCC
Q 004914 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
.|.++|..|...+.+..|...+.+.+|+|||+.|+.++. +..|.+||+.++....+.... .+.+.+|+|+ |
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD-----G 257 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD-----G 257 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC-----C
Confidence 788899988877788888889999999999999888764 468999999988877666555 7788999999 6
Q ss_pred CEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CC--cEEEEEcCCCceEEEecCCCCCC
Q 004914 151 RRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPRGSP 223 (724)
Q Consensus 151 ~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~--~i~i~d~~~~~~~~~i~~~~~~~ 223 (724)
+.++ +.+.+|...+|.....+.....+..+.+......|+ |+.++.++ ++ .|.+||+.++..... ....
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~~--- 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFGG--- 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecCC---
Confidence 6654 556666644443322344445555566666778898 66666553 22 588888876654332 2111
Q ss_pred CCCCCCCceee-cCCCeEEEE--eCC--eEEEEEEe
Q 004914 224 RPELLLPHLVW-QDDTLLVIG--WGT--YIKIASIK 254 (724)
Q Consensus 224 ~~~~~~~~l~~-~~~~~l~~g--~d~--~i~vw~~~ 254 (724)
.......| ++++.++.. ..+ .|.+|++.
T Consensus 334 ---~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 334 ---GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred ---CcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 11334567 677777765 233 46666653
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=2.1e-06 Score=83.28 Aligned_cols=174 Identities=11% Similarity=0.158 Sum_probs=123.3
Q ss_pred CeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCCC-CeeEEEeCCCCCCCC
Q 004914 74 GTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-PMKAISLDPDYTRKM 149 (724)
Q Consensus 74 g~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (724)
..+.|||= ....+.++. ...+|.++.++++ +|+..- .+.|.||...+ +....+.... |=--++..|.- +
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~---~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS---N 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC---C
Confidence 47999985 455566654 5568999999854 565554 46899999985 3333333222 22223344441 1
Q ss_pred CCEEEE-ecCCCeEEEEecccCCc-cceEeccCCCCeEEEEEe--CCEEEEEc-CCc-EEEEEcCCCceEEEecCCCCCC
Q 004914 150 SRRFVA-GGLAGHLYLNSKKWLGY-RDQVLHSGEGPVHVVKWR--TSLIAWAN-DAG-VKVYDAANDQRITFIERPRGSP 223 (724)
Q Consensus 150 ~~~l~~-g~~dg~v~l~~~~~~~~-~~~~l~~~~~~V~~l~~~--~~~la~~~-d~~-i~i~d~~~~~~~~~i~~~~~~~ 223 (724)
...+|. |..-|.|.+-+..+... ....+..|.+.|.+++.+ |.++|+++ .|+ |||||..+|..+..+.+....
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~- 226 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR- 226 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch-
Confidence 234444 66779999988876543 457889999999999999 89999994 554 899999999999887665422
Q ss_pred CCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 224 RPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 224 ~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.-+.+++| ++...|+++ ..|+++|+.++....
T Consensus 227 ---A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 227 ---ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ---heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 23778999 788888888 778999999987543
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=2.6e-08 Score=109.82 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=124.2
Q ss_pred CCEEEEEeCCCeEEEEec--CC-Ce---eEEEcC---C----ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-E
Q 004914 64 ERMIALGTHAGTVHILDF--LG-NQ---VKEFPA---H----TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-K 129 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~--~~-~~---~~~~~~---h----~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (724)
..++.+|+.||.|+||+- ++ .. +..+.+ + .+.=.-+.|.....+|+++|+-..|+|||.....+. -
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 447889999999999976 22 11 222222 1 111122567777777777777889999999886554 3
Q ss_pred EeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCCC--eEEEEEe----CCEEEEEcC
Q 004914 130 FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGP--VHVVKWR----TSLIAWAND 199 (724)
Q Consensus 130 ~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~~--V~~l~~~----~~~la~~~d 199 (724)
+.... .|+++.-+-. .|+.+++|..||.+++|+++-... .......|... |..+.+. +.+++++.+
T Consensus 1203 iP~~s~t~vTaLS~~~~----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred cccCCCccceeeccccc----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 33333 6776655444 378999999999999999874432 45555667665 8888888 467777799
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
|.|++||++.......+.... ....+...+++.. .....+++|..+.|+||++...+
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred CeEEEEecccCcccccceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 999999999753332211111 0000111334444 56778899977999999987654
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=2.4e-07 Score=101.05 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=117.7
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCC--CEEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDG--SVVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (724)
.|+|+|+.|+..+.. ..|++||+.+.....+..+.+...+.+|+|+|+.|+ +.+.+| .|.+||+.++....+..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 589999999887643 479999996555445555555566789999999775 455565 59999999888777666
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC-C--cEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND-A--GVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d-~--~i~i 204 (724)
+. ....++|+|+ ++.++.++ .+|...+|.....+.....+..........+|+ |+.|+.. .+ + .|.+
T Consensus 290 ~~~~~~~~~~spD-----G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 290 HFGIDTEPTWAPD-----GKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred CCCCccceEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 55 5578899999 77777665 455555554433333333333333344567888 6777765 32 2 5899
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCC--eEEEEEEe
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGT--YIKIASIK 254 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~--~i~vw~~~ 254 (724)
||+.+++.. .+.... ......| ++++.++.. .++ .+.++++.
T Consensus 365 ~d~~~g~~~-~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 365 MDLSTGSVR-TLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EECCCCCeE-ECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 999887654 222111 1224567 577776665 223 35555553
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=6.1e-08 Score=100.31 Aligned_cols=189 Identities=18% Similarity=0.222 Sum_probs=126.8
Q ss_pred EEEecCCE-EEEEeCCCeEEEEecCCCeeE-----------------------------EEcCCc--c-----ce----e
Q 004914 59 CVAVAERM-IALGTHAGTVHILDFLGNQVK-----------------------------EFPAHT--A-----AV----N 97 (724)
Q Consensus 59 ~~s~~~~~-la~g~~dg~I~i~d~~~~~~~-----------------------------~~~~h~--~-----~V----~ 97 (724)
.+++||++ +|+|.....|++||+..-.++ .+.-|. + .| .
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR 137 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR 137 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCc
Confidence 58899984 689999999999998432110 011111 0 11 1
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce
Q 004914 98 DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ 175 (724)
Q Consensus 98 ~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~ 175 (724)
+++.+.-..-|.+++....|+-+++..|... .+.... .+++|..++. ..++++|+.+|.|-.|+.+ ......
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-----hgLla~Gt~~g~VEfwDpR-~ksrv~ 211 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-----HGLLACGTEDGVVEFWDPR-DKSRVG 211 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-----cceEEecccCceEEEecch-hhhhhe
Confidence 2222222223555666667888888887754 466665 9999999998 7899999999999999876 333322
Q ss_pred Ee------ccCCC-----CeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec---CCC
Q 004914 176 VL------HSGEG-----PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ---DDT 238 (724)
Q Consensus 176 ~l------~~~~~-----~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~ 238 (724)
.+ ..+.+ .|+++.|+ |--+++| ++|.+.|||+++.+++..-.... ...+..+.|. +..
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-----e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-----ELPIKKLDWQDTDQQN 286 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-----ccceeeecccccCCCc
Confidence 22 22333 39999999 5567777 79999999999988876432222 2346678883 235
Q ss_pred eEEEEeCCeEEEEEEeeCCC
Q 004914 239 LLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 239 ~l~~g~d~~i~vw~~~~~~~ 258 (724)
.+++.....+++||-.+++.
T Consensus 287 ~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred eEEecchHHhhhcccccCCc
Confidence 66666778899999988764
No 221
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.90 E-value=1.5e-06 Score=91.31 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=121.0
Q ss_pred eEEEEecCCEEEEEe-CCCeEEEEecC--CCe--eEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccC-Cce--
Q 004914 57 ASCVAVAERMIALGT-HAGTVHILDFL--GNQ--VKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFT-DEK-- 127 (724)
Q Consensus 57 i~~~s~~~~~la~g~-~dg~I~i~d~~--~~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~-~~~-- 127 (724)
..+++|++++|++++ .++.|.+|+++ +.. +... ...+....++|+|+|+++++++. ++.|.+|++.+ +..
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 347889999887664 57889999985 222 1222 23335678999999998887764 88999999974 322
Q ss_pred -E-EEeCCCCeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCccc------eEeccCCCCeEEEEEe--CCEEEE
Q 004914 128 -M-KFDYHRPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRD------QVLHSGEGPVHVVKWR--TSLIAW 196 (724)
Q Consensus 128 -~-~~~~~~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~------~~l~~~~~~V~~l~~~--~~~la~ 196 (724)
. .+.....+.+++++|+ ++.+ ++...++.|.+|+..-.+... .....+. ....+.|+ |+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~p~-----g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPD-----NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYC 191 (330)
T ss_pred ceeeccCCCcccEeEeCCC-----CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEE
Confidence 1 1222236788999999 6666 455567899999875322111 1112222 34578888 567766
Q ss_pred E--cCCcEEEEEcCC--Cc--eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 197 A--NDAGVKVYDAAN--DQ--RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 197 ~--~d~~i~i~d~~~--~~--~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
+ .++.|.+|++.. ++ .+..+...........+...+.+ ++++.+.++ .++.|.+|++...
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 6 378999999973 32 23333221111111122334556 677878777 5788999999753
No 222
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.90 E-value=2.6e-07 Score=99.77 Aligned_cols=186 Identities=19% Similarity=0.342 Sum_probs=139.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCC--eeEEEcCCc-cceeEEEE-cCCCC-EEEEEeC-CCCEEEEeccC--CceEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGN--QVKEFPAHT-AAVNDLSF-DVDGE-YVGSCSD-DGSVVINSLFT--DEKMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~--~~~~~~~h~-~~V~~l~~-s~~g~-~l~s~~~-Dg~v~iwd~~~--~~~~~~ 130 (724)
.+.+.+..++.++.++.+.+|+.... ....+..+. ..+..+.+ ++++. .++.++. |+.+.+|+..+ .....+
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 46667888999999999999999555 566666644 37777777 88887 5555455 99999999997 445567
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEE-EcCCcEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAW-ANDAGVKV 204 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~-~~d~~i~i 204 (724)
..|. .|.+++|+|+ +..+++++. ++.+.+|+.. .+.....+..|...|.++.|+ +. ++++ +.|+.+++
T Consensus 152 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 152 EGHSESVTSLAFSPD-----GKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred ecCcccEEEEEECCC-----CCEEEecCCCCCceEEEEcC-CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 7787 9999999999 678888875 9999999886 345666777789999999999 44 5555 47999999
Q ss_pred EEcCCCceEE-EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 205 YDAANDQRIT-FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~~-~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
||...+..+. .+..+... . ...| .++..++++ .++.+++|+++...
T Consensus 226 wd~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDS------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EECCCCcEEeeecCCCCcc------e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 9988777766 33333211 1 1145 444566666 99999999998654
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.90 E-value=4e-08 Score=94.88 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=116.3
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCe---eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE----
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---- 128 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---- 128 (724)
..+|+|..+.|++++.|..-++|.. .+.. ...+..|+...+++.|+|.++.|++||....|.||-+....-.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 3479999999999999999999998 5543 3456678999999999999999999999999999988763321
Q ss_pred EE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc------------cCC-----ccceEeccCCCCeEEEEE
Q 004914 129 KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK------------WLG-----YRDQVLHSGEGPVHVVKW 189 (724)
Q Consensus 129 ~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~------------~~~-----~~~~~l~~~~~~V~~l~~ 189 (724)
.+ ...+ .|+++.|+|+ +-++++|+.|+..+++..- |.. ..........|.|.++.|
T Consensus 140 hikkPirStv~sldWhpn-----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPN-----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred hhCCccccceeeeeccCC-----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 11 2234 8999999999 7899999999999998521 111 111112234678999999
Q ss_pred e--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 190 R--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 190 ~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
+ |..+++. .|+++.+-|.....
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc
Confidence 9 8888887 79999999876553
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.89 E-value=6.5e-10 Score=119.04 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=102.2
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEE
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (724)
+.+.+|..+|.|..|+..|.++++|+.|..|+||...++.+. ...+|. .|+.++.+.+ ...+++++.|..|++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-----n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-----NTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-----hhhhhhcccCceEEE
Confidence 445789999999999999999999999999999999886654 678898 9999999887 678899999999999
Q ss_pred EecccCCccceEeccCCCCeEEEEEeCCEEEEEcCCcEEEEEcC
Q 004914 165 NSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~~d~~i~i~d~~ 208 (724)
|... ++....++.+|.|.|++++|++.- +++.||++++||.+
T Consensus 259 Wrl~-~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 259 WRLP-DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR 300 (1113)
T ss_pred EecC-CCchHHHHhccccceeeeccCccc-cCCCCCceEecccc
Confidence 9886 788899999999999999999654 45579999999988
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.89 E-value=1.5e-05 Score=93.36 Aligned_cols=526 Identities=17% Similarity=0.180 Sum_probs=254.4
Q ss_pred CceEEEEecCCEEEEEeC---CCeEEEEecCCCeeEEEc----CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-
Q 004914 55 DAASCVAVAERMIALGTH---AGTVHILDFLGNQVKEFP----AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE- 126 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~---dg~I~i~d~~~~~~~~~~----~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~- 126 (724)
+...+|.|.|++||+... ...|.+|..+|-.-..|. .....|..+.|+++++.||....|. |.+|...+-.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 335689999999988764 467888998876644443 3456899999999999999877665 9999887633
Q ss_pred ----eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc-----------cceEecc------------
Q 004914 127 ----KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY-----------RDQVLHS------------ 179 (724)
Q Consensus 127 ----~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~-----------~~~~l~~------------ 179 (724)
...+.....+..+.|+|. +...+.+++.+|.+..++..|.-. ...++.+
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe----~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPE----KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred EEEEEEEccCCCCCCceEECCC----CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC
Confidence 223333336666999998 456777777767776654333210 0111111
Q ss_pred -----------CCCCeEEEEEe--CC-EEEEEcCCcEEEEEcCCCceE--------EEecCC----CCCCCCCCCCCcee
Q 004914 180 -----------GEGPVHVVKWR--TS-LIAWANDAGVKVYDAANDQRI--------TFIERP----RGSPRPELLLPHLV 233 (724)
Q Consensus 180 -----------~~~~V~~l~~~--~~-~la~~~d~~i~i~d~~~~~~~--------~~i~~~----~~~~~~~~~~~~l~ 233 (724)
-..+|..++|+ +. +.+..+|+.+.+|....+... ..+... ............++
T Consensus 414 VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (928)
T PF04762_consen 414 VPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA 493 (928)
T ss_pred CCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence 24778899998 33 455558999999986543221 111110 00111233456678
Q ss_pred ec-CCCeEEEEeC----CeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecCCce-EEEEeecCCC--
Q 004914 234 WQ-DDTLLVIGWG----TYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCL-VVLAYIPGEE-- 305 (724)
Q Consensus 234 ~~-~~~~l~~g~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l-~~l~~~~~~~-- 305 (724)
|. ++..+++... ..+.++++..... ...+......+..+..++..+..- +++....+.-
T Consensus 494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSEN-------------SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred EeCCCEEEEEEecCcccceEEEEEeccCCC-------------ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 84 4444444433 3577777643221 112223333344455554444221 2222211100
Q ss_pred ---CCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCCccccccccCcccccccCCCCCCCCCcccCCCCCEEEE
Q 004914 306 ---DGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYI 382 (724)
Q Consensus 306 ---~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v 382 (724)
.......... ...-+.+.++...+++-....+.+....++-+++-.++....| .. -.+.-+.+
T Consensus 561 ~~~~~~~~~~~~f-----p~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~~~la~~~tS--------F~-v~~~~Ll~ 626 (928)
T PF04762_consen 561 LSSDGELSQIVKF-----PQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANSRLLASNCTS--------FA-VTDSFLLF 626 (928)
T ss_pred eecCCCccccccC-----CCCCcEEEEEEECCccceeEEEEECCCCEEEECCEEEecCCce--------EE-EEcCEEEE
Confidence 0000000111 2234566666555443111122222222333333333332111 00 01111222
Q ss_pred ECCCc-EEEEeeCCchhhHHHHHhcc--cHHHHHHHHHhcC------------------CCchh--HhHHHHHHHHHHhc
Q 004914 383 VSPKD-VVIAKPRDAEDHIAWLLEHG--WHEKALAAVEAGQ------------------GRSEL--LDEVGSRYLDHLIV 439 (724)
Q Consensus 383 ~s~~~-i~~~~~~~~~d~i~~ll~~~--~~~~Al~~~~~~~------------------~~~~~--~~~i~~~~~~~l~~ 439 (724)
.+..+ +.++....-.+.++...... .+++-..-.+++. ...+. -+.+--..+..++.
T Consensus 627 TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld 706 (928)
T PF04762_consen 627 TTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPRALVLAGIRKLLD 706 (928)
T ss_pred EecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccHhHHHHHHHHHHh
Confidence 22222 33333320111111111000 0111111111111 00011 13344556667788
Q ss_pred cchHHHHHhhhhhhh-------ccChhhHHHHHHHHhhc-CCCCcccccCcCCC-CCCCHHHHHHHHHHHHcCCccHHHH
Q 004914 440 ERKYAEAASLCPKLL-------RGSASAWERWVFHFAHL-RQLPVLVPYMPTEN-PRLRDTAYEVALVALATNPSFHKYL 510 (724)
Q Consensus 440 ~~~~~~Aa~~~~~~~-------~~~~~~we~~i~~F~~~-~~l~~L~~~l~~~~-~~l~~~~~~~~L~~~l~~~~~~~~~ 510 (724)
+++|.+|...|.+-- ..++..|-.=|..|++. +.++.|.-+|-..+ .-....+|.. ++.. .. ..
T Consensus 707 ~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~----~~~~--~~-~~ 779 (928)
T PF04762_consen 707 AKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKD----TYPP--SS-EA 779 (928)
T ss_pred hccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccccccc----cccc--cc-cc
Confidence 999999999877632 23455565556667652 22222222222110 0011111111 1100 00 00
Q ss_pred HHHh-hcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcC--CHHHHHHHHHHcCC------chhhHHHHhcC
Q 004914 511 LSTV-KSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDG--HYEKAFSLYADLMK------PYIFDFIENHN 581 (724)
Q Consensus 511 ~~~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~--~~~~al~~~~~~~~------~~~~~~i~~~~ 581 (724)
.... ...+..--.++.+..++++.+........+...+..=|.+.+ +.+.||...-+++. .++++||--.-
T Consensus 780 ~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLv 859 (928)
T PF04762_consen 780 QPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLV 859 (928)
T ss_pred ccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeec
Confidence 0000 000011112455566666665434445556666666787777 89999999888872 34666665555
Q ss_pred ChHHHHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhc
Q 004914 582 LHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLN 623 (724)
Q Consensus 582 l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~ 623 (724)
..+.+++.+.-+.+++.. ++|.+..+-+|.+.+|.|++
T Consensus 860 Dvn~Ly~~ALG~YDl~La----l~VAq~SQkDPKEYLPfL~~ 897 (928)
T PF04762_consen 860 DVNKLYDVALGTYDLELA----LMVAQQSQKDPKEYLPFLQE 897 (928)
T ss_pred cHHHHHHHHhhhcCHHHH----HHHHHHhccChHHHHHHHHH
Confidence 666677777666655332 33333355678877777763
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=6.3e-07 Score=97.40 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=115.2
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (724)
..|.++|.+|...+.+..+...+.+.+|+|+|+.|+.++.+ ..|.+||+.++....+.... .+.+.+|+|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD----- 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD----- 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-----
Confidence 36778888887766777788899999999999999887643 35999999988776665333 6678999999
Q ss_pred CCEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CCcEEEEEc--CCCceEEEecCCCCC
Q 004914 150 SRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAGVKVYDA--ANDQRITFIERPRGS 222 (724)
Q Consensus 150 ~~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~~i~i~d~--~~~~~~~~i~~~~~~ 222 (724)
|+.++ +.+.+|...+|..+..+.....+..+.+.+....|+ |+.++..+ ++...+|.+ .++.... +....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g-- 327 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG-- 327 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC--
Confidence 77665 567788888886654444555555555566778898 66665443 455566654 4443322 21111
Q ss_pred CCCCCCCCceee-cCCCeEEEE-eC-C--eEEEEEEeeCC
Q 004914 223 PRPELLLPHLVW-QDDTLLVIG-WG-T--YIKIASIKTNQ 257 (724)
Q Consensus 223 ~~~~~~~~~l~~-~~~~~l~~g-~d-~--~i~vw~~~~~~ 257 (724)
.......| ++++.++.. .. + .|.+|++.++.
T Consensus 328 ----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 328 ----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred ----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 11234567 578777765 32 2 58899886643
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.6e-07 Score=99.36 Aligned_cols=172 Identities=12% Similarity=0.067 Sum_probs=111.4
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCCEEEEe--ccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINS--LFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd--~~~~~~~~~~~ 132 (724)
+|+|+|+.|+..+.+ ..|.+||+.+.....+....+.+.+.+|+|||+.|+ +.+.+|...||. +.++....+..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC
Confidence 699999999887643 469999996554444444445667889999999876 567788877665 44566556655
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCC---cEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA---GVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~---~i~i 204 (724)
+. ...+..|+|+ |+.++..+ .+|...+|.....+.....+...........|+ |+.|+.. .++ .|.+
T Consensus 282 ~~~~~~~~~wSpD-----G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 282 SSGIDTEPFFSPD-----GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CCCCCcCeEEcCC-----CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 55 5677899999 77776554 456777776543333333332222334456787 7777765 333 5999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
||+.+++.... .... ......| ++++.|+.+
T Consensus 357 ~d~~~g~~~~l-t~~~-------~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 357 QDLATGQVTAL-TDTT-------RDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCCeEEc-cCCC-------CccCceECCCCCEEEEE
Confidence 99988765432 2111 1234578 677777766
No 228
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.85 E-value=1.8e-07 Score=92.15 Aligned_cols=157 Identities=14% Similarity=0.252 Sum_probs=118.4
Q ss_pred CccccCCCceEEEEecCCEEEEEeCCCeEEEEecCC-CeeEEE---cCCccceeEEEEcCCCCEEEEE--eCCCCEEEEe
Q 004914 48 LPSLLANDAASCVAVAERMIALGTHAGTVHILDFLG-NQVKEF---PAHTAAVNDLSFDVDGEYVGSC--SDDGSVVINS 121 (724)
Q Consensus 48 ~~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~-~~~~~~---~~h~~~V~~l~~s~~g~~l~s~--~~Dg~v~iwd 121 (724)
++.++-...|.++--+.+.|++.-.+. |+|+|++. +.+.++ ..+...+.++++++.+.+++-- ...|.|.+||
T Consensus 81 ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 444444456777777888887776654 99999954 334443 3466678888888888888853 3479999999
Q ss_pred ccC-CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe-EEEEecccCCccceEeccCC--CCeEEEEEe--CCEE
Q 004914 122 LFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGE--GPVHVVKWR--TSLI 194 (724)
Q Consensus 122 ~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~l~~~~--~~V~~l~~~--~~~l 194 (724)
..+ ..+..+..|+ ++-+++|+|+ |.++|+++..|+ |+++... .|.+...+..+. ..|.+++|+ ++++
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~~-----G~llATASeKGTVIRVf~v~-~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSPD-----GTLLATASEKGTVIRVFSVP-EGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred cccceeeeEEEecCCceeEEEECCC-----CCEEEEeccCceEEEEEEcC-CccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 988 5667788999 9999999999 999999999998 6677663 566666665543 457889999 6788
Q ss_pred EEE-cCCcEEEEEcCCCc
Q 004914 195 AWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~ 211 (724)
+++ +.++|.+|.+....
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 777 67899999987543
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.84 E-value=5.9e-08 Score=92.74 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=80.8
Q ss_pred EEEecCCEEEE--EeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC---CCCEEEEeccCCceEEEeCC
Q 004914 59 CVAVAERMIAL--GTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~--g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~~~ 133 (724)
+|+|+|+.+|+ |..++.|.+||.++..+..+. ...++.+.|+|+|+++++|+. .|.+.+||..+.+......+
T Consensus 66 ~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~ 143 (194)
T PF08662_consen 66 AWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH 143 (194)
T ss_pred EECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence 58999987654 456789999999887777664 457889999999999999874 46799999997666554445
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecC------CCeEEEEec
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGL------AGHLYLNSK 167 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~------dg~v~l~~~ 167 (724)
..++.++|+|+ |+++++++. |..+++|+.
T Consensus 144 ~~~t~~~WsPd-----Gr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 144 SDATDVEWSPD-----GRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CcEEEEEEcCC-----CCEEEEEEeccceeccccEEEEEe
Confidence 57889999999 899999875 556777764
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.80 E-value=3.1e-08 Score=109.59 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=114.2
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE--EEeCCC-Ce
Q 004914 61 AVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM--KFDYHR-PM 136 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~--~~~~~~-~v 136 (724)
+++.=++++|+.-|.|.+|+...... ..+.+|.+.|.++.++.+|++++|+|+|.++++|++.+++.. +.-+|. .|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 33445899999999999999954433 358899999999999999999999999999999999996654 445677 99
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC-CCeEEEEEe-CC--EEEEEcCCcEEEEEcCCC
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE-GPVHVVKWR-TS--LIAWANDAGVKVYDAAND 210 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~-~~V~~l~~~-~~--~la~~~d~~i~i~d~~~~ 210 (724)
+.+.|+|+ .+++++.|-+.++| +|++....++.+|. ..|+.+... +. .++++.|+++++|+....
T Consensus 222 w~~~~~~n-------~i~t~gedctcrvW--~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN-------RIITVGEDCTCRVW--GVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc-------eeEEeccceEEEEE--ecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999986 79999999999999 45676666777775 458888877 33 344448999999998753
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.79 E-value=1.7e-08 Score=101.81 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=143.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCee
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMK 137 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~ 137 (724)
..+-+|+.++.|+..|.+..+|. ++.....+. -...|.++.|-.+.+++|.+- ...+.|||-.+.++..+..+..|.
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk~~~~v~ 213 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLKRHIRVA 213 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehhhcCchh
Confidence 36668999999999999999999 455444443 345788999988888777664 568999998888887788777999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEE
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRIT 214 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~ 214 (724)
.+.|.|. .-++++++..|.+..-+.. .|..+..+....|.+..+.-+ +.++-.| +.|+|.+|...+.+++.
T Consensus 214 rLeFLPy-----HfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 214 RLEFLPY-----HFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred hhcccch-----hheeeecccCCceEEEeec-hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence 9999998 5778888888988876664 566666666677888888777 3566666 78999999999888776
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+-.+. ..+.+++. ++|.+++++ -|..++|||++.-.
T Consensus 288 KiLcH~------g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 288 KILCHR------GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHhcC------CCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 544443 34778888 678888777 89999999998743
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=8.8e-07 Score=87.03 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=130.4
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCE-EEEEeCCCCEEEEeccC----Cc----
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFT----DE---- 126 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~----~~---- 126 (724)
..+|.++-..+|+++.|-+|++|+.+......++. ....|+|++|-|.+.. |+.|. .+-|.+|.... +.
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRM 181 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccccccccc
Confidence 44666666678899999999999997665544543 4568999999997654 55555 45688997643 11
Q ss_pred -------eEEEeCCCCeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEE
Q 004914 127 -------KMKFDYHRPMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAW 196 (724)
Q Consensus 127 -------~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~ 196 (724)
+..-.+|.+|+++.|.++ |..+++++ .+..+.+|+.. .+..........+.++-+.|+ |.++.+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~d-----gt~l~tAS~gsssi~iWdpd-tg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNED-----GTILVTASFGSSSIMIWDPD-TGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCC-----CCEEeecccCcceEEEEcCC-CCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 122344559999999999 77777776 45679999886 455555555667789999999 566666
Q ss_pred E-cCCcEEEEEcCCC-ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCC
Q 004914 197 A-NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 197 ~-~d~~i~i~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
+ -|+..++|+.... ....- .... ..+...+| +.|..|+....+.-+++.+.-.+.
T Consensus 256 At~davfrlw~e~q~wt~erw-~lgs------grvqtacWspcGsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERW-ILGS------GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred ecccceeeeehhcccceecce-eccC------CceeeeeecCCCCEEEEEEcCCceEEEEeecCC
Confidence 6 6999999965422 22111 1111 14667889 788888888777777888765543
No 233
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.79 E-value=1.2e-07 Score=102.94 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=124.5
Q ss_pred CEEEEEeCCCeEEEEecCCCe------eEEEc-------CCccceeEEEEcCC-CCEEEEEeCCCCEEEEecc---CCc-
Q 004914 65 RMIALGTHAGTVHILDFLGNQ------VKEFP-------AHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLF---TDE- 126 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~~~------~~~~~-------~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~---~~~- 126 (724)
.-+++++.||.|..|+...-. ..... .-...++++.|.+. ...++.|++.|.|..-+.. .+.
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 458899999999999873211 00111 12346888999875 4578999999999874333 222
Q ss_pred -----eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE
Q 004914 127 -----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA 197 (724)
Q Consensus 127 -----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~ 197 (724)
...+..|. +|+++.++|-+ ...|.+++ |.++++|...........+..+...|++++|+ +.+++++
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFY----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCc----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 22344455 99999999973 45566666 88999997753344444555667779999999 4666776
Q ss_pred -cCCcEEEEEcCCCc--eEEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCCeEEEEEEeeC
Q 004914 198 -NDAGVKVYDAANDQ--RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 198 -~d~~i~i~d~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.||.+.+||+.... ++...... ....+.+.|+ .+..|++| ..|.+++|++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVC------SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhccccCCccccccc------ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 69999999997432 33222111 2345677784 59999999 8999999999654
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.79 E-value=4.6e-05 Score=81.75 Aligned_cols=398 Identities=15% Similarity=0.097 Sum_probs=186.3
Q ss_pred EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec
Q 004914 88 EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (724)
Q Consensus 88 ~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (724)
.+....-....++++|+|++++.++ ||...|+.......... ..-...+|.+. +.+|+-...++|.++..
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~---G~g~~~vw~~~------n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF---GSGLSFVWSSR------NRYAVLESSSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE---EE-SEEEE-TS------SEEEEE-TTS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc---CceeEEEEecC------ccEEEEECCCeEEEEEc
Confidence 3333444578899999999888854 67777776333222221 24456778886 45777777888998733
Q ss_pred ccCCccceEeccCCCCeEEEEEeCCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCC
Q 004914 168 KWLGYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGT 246 (724)
Q Consensus 168 ~~~~~~~~~l~~~~~~V~~l~~~~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~ 246 (724)
+.......+... ..+..+-. |.++...+++.|.+||..+++.+..+..+. +..+.| .++..++...++
T Consensus 97 -~~~~~~k~i~~~-~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~--------vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 97 -FKNEVVKSIKLP-FSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSA--------VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -TEE-TT-----S-S-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E---------EEEEE-TTSSEEEEE-S-
T ss_pred -CccccceEEcCC-cccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCC--------CcEEEEECCCCEEEEEeCC
Confidence 233332222221 23444433 888888877799999999999999876542 457889 566778777888
Q ss_pred eEEEEEEeeCCC--CCCCCccccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCC
Q 004914 247 YIKIASIKTNQS--NVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQR 324 (724)
Q Consensus 247 ~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (724)
.+.+++.+.... ....|. . .. +....+....|.+..|.++ ..+.+..
T Consensus 166 ~i~il~~~~~~~~~~~~~g~----e-~~--f~~~~E~~~~IkSg~W~~d-~fiYtT~----------------------- 214 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGV----E-DA--FELIHEISERIKSGCWVED-CFIYTTS----------------------- 214 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-----G-GG--EEEEEEE-S--SEEEEETT-EEEEE-T-----------------------
T ss_pred eEEEEEecchhcccccccCc----h-hc--eEEEEEecceeEEEEEEcC-EEEEEcC-----------------------
Confidence 999998765410 000111 0 01 1222333556666777777 2222221
Q ss_pred CeEEEeccCCcccccCcccCCccccccccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchh-hHHHH
Q 004914 325 PEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAED-HIAWL 403 (724)
Q Consensus 325 ~~l~iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d-~i~~l 403 (724)
..++- +-|.+... ..++--.-|-+... +..+++|++-.+.-+...+.+... +.+..
T Consensus 215 ~~lkY--l~~Ge~~~-------i~~ld~~~yllgy~--------------~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~a 271 (443)
T PF04053_consen 215 NHLKY--LVNGETGI-------IAHLDKPLYLLGYL--------------PKENRLYLIDRDGNVISYELDLSELEFKTA 271 (443)
T ss_dssp TEEEE--EETTEEEE-------EEE-SS--EEEEEE--------------TTTTEEEEE-TT--EEEEE--HHHHHHHHH
T ss_pred CeEEE--EEcCCcce-------EEEcCCceEEEEEE--------------ccCCEEEEEECCCCEEEEEECHHHHHHHHH
Confidence 12222 11111000 11111112334443 246789998877777777888887 55889
Q ss_pred HhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcC
Q 004914 404 LEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPT 483 (724)
Q Consensus 404 l~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~ 483 (724)
+-+++|++++++.+....-+.--..-+.+-+.+|-.+|-.+.|.++ .. ++. .||.=+=++..|-.-+..
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~----~~-D~~------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQF----VT-DPD------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHH----SS--HH------HHHHHHHHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhh----cC-ChH------HHhHHHHhcCCHHHHHHH
Confidence 9999999999887633321111134577888889999999888883 22 222 222222122222222222
Q ss_pred CCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHH
Q 004914 484 ENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFS 563 (724)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~ 563 (724)
....-++..+..+=...+... +.+.-.+..++.. -|+--.++- .......-.+-++.+....|++.-|+.
T Consensus 341 a~~~~~~~~W~~Lg~~AL~~g-~~~lAe~c~~k~~--d~~~L~lLy-------~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 341 AKELDDPEKWKQLGDEALRQG-NIELAEECYQKAK--DFSGLLLLY-------SSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp CCCCSTHHHHHHHHHHHHHTT-BHHHHHHHHHHCT---HHHHHHHH-------HHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHcC-CHHHHHHHHHhhc--CccccHHHH-------HHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 211224555555555555432 4433333333321 011000000 001112234445556666777777777
Q ss_pred HHHHcCCch-hhHHHHhcC
Q 004914 564 LYADLMKPY-IFDFIENHN 581 (724)
Q Consensus 564 ~~~~~~~~~-~~~~i~~~~ 581 (724)
+++-+.+.+ ..+.+.+.+
T Consensus 411 ~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHT-HHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHcC
Confidence 766666633 555555554
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.77 E-value=6.4e-07 Score=86.72 Aligned_cols=107 Identities=19% Similarity=0.344 Sum_probs=85.6
Q ss_pred eEEEEecCC--EEEE-EeCCCeEEEEecCCCee---EEEcCCccceeEEEEcCCCCEEEEEeCCCC-EEEEeccCCceE-
Q 004914 57 ASCVAVAER--MIAL-GTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGS-VVINSLFTDEKM- 128 (724)
Q Consensus 57 i~~~s~~~~--~la~-g~~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~-v~iwd~~~~~~~- 128 (724)
..+++|..+ .||. |-.-|.|.|.|+..... ..+.+|...|.|++.+.+|..+||+|..|+ |+|||..+|...
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 445666432 4443 45579999999954433 678999999999999999999999999998 789999997654
Q ss_pred EEeC--CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 129 KFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 129 ~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
.+.. .+ .|.|++|+|+ +.++++++..|++.++...
T Consensus 219 E~RRG~d~A~iy~iaFSp~-----~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPN-----SSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eeecCCchheEEEEEeCCC-----ccEEEEEcCCCeEEEEEee
Confidence 4432 23 8999999999 8999999999999999654
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.8e-07 Score=89.87 Aligned_cols=193 Identities=10% Similarity=0.099 Sum_probs=135.9
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEecC-----CCeeEEEcCCccceeEEEEcCCCC-EEEEEeCC--CCEEEEeccCCc-
Q 004914 56 AASCVAVAERMIALGTHAGTVHILDFL-----GNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDD--GSVVINSLFTDE- 126 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~~dg~I~i~d~~-----~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~D--g~v~iwd~~~~~- 126 (724)
+|....-....|++|..+|.+.+|... ......+..+ .++..+.-++... .+++||.. ..+.|||+...+
T Consensus 107 ~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 107 SIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred cccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence 344444455678899999999999885 3334444444 4566677666655 45668888 789999998752
Q ss_pred eEEE----------eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEE
Q 004914 127 KMKF----------DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLI 194 (724)
Q Consensus 127 ~~~~----------~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~l 194 (724)
+..- .....++++.|-|.- ....|++++.-+.+++|+.+-..++...+.-.+.+++++... |++|
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~---~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGS---PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCC---CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEE
Confidence 2211 111145677786651 247899999999999999885556677777778888888776 7888
Q ss_pred EEE-cCCcEEEEEcCCCceEEE-ecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 195 AWA-NDAGVKVYDAANDQRITF-IERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~~~~~-i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.++ .-+.+..||.++++.... +..-.+ .+.++.. +...++++| -|..+||+|+.+++.
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tG------sirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCGLKGITG------SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred EEecccchhheecccCceeeccccCCccC------CcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 888 578999999999987765 333332 2445555 445777777 899999999998654
No 237
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1e-07 Score=93.96 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=112.1
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC------CceEEE--eCCC-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT------DEKMKF--DYHR-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~------~~~~~~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
+-+.+|.+-|+.+.|+.+|++|++|+.|..+++|++.. .+.+.+ ..|+ .|.|++|... ++.+.+|+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-----N~~~~SG~ 124 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-----NRFLYSGE 124 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-----CeeEecCC
Confidence 44678999999999999999999999999999999864 223333 3344 8999999988 78999999
Q ss_pred CCCeEEEEecccCCccceEecc--CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc-eEEEecCCCCCCCCCCCCCc
Q 004914 158 LAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPH 231 (724)
Q Consensus 158 ~dg~v~l~~~~~~~~~~~~l~~--~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~ 231 (724)
.+|+|...+.. ......+... ..|.|..+..+ .+.++++ .++.|.+||.+..+ .+..+- +.+.+. ...+
T Consensus 125 ~~~~VI~HDiE-t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~---~F~t 199 (609)
T KOG4227|consen 125 RWGTVIKHDIE-TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGK---NFYT 199 (609)
T ss_pred CcceeEeeecc-cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCc---ccee
Confidence 99999998775 2333333322 34688888888 3555554 78999999998654 222111 111110 1122
Q ss_pred eee--cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 232 LVW--QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 232 l~~--~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+-| ....+|++. ..+-+-+||++..+.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccc
Confidence 334 245566676 777899999986643
No 238
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=92.33 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=109.4
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC--CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce---E---
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK---M--- 128 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~---~--- 128 (724)
.+|++..++++++|++.|.+++|+..+...+.++. -.+.+..++++++..++|.|+..|.|.++.+..+.. .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 67899999999999999999999997776544443 555667778899999999999999999998876321 1
Q ss_pred EE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc---CCccceEeccCCCCeEEEEEeCCEEEEEcCCcEE
Q 004914 129 KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW---LGYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVK 203 (724)
Q Consensus 129 ~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~---~~~~~~~l~~~~~~V~~l~~~~~~la~~~d~~i~ 203 (724)
.. ..|+ .|++++|+++ +..+.+|...|+|.+...+. ...+...+-.-.++|..+.....++..++-....
T Consensus 118 ~~d~~~~~rVTal~Ws~~-----~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~ 192 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKN-----GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI 192 (726)
T ss_pred cccccCCceEEEEEeccc-----ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhh
Confidence 12 2245 9999999999 89999999999999876542 1123333444567787787775555444333345
Q ss_pred EEEcCCCc
Q 004914 204 VYDAANDQ 211 (724)
Q Consensus 204 i~d~~~~~ 211 (724)
++++..+.
T Consensus 193 Lc~tE~et 200 (726)
T KOG3621|consen 193 LCQTEAET 200 (726)
T ss_pred eeecchhH
Confidence 66665443
No 239
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.72 E-value=2.4e-06 Score=89.81 Aligned_cols=178 Identities=10% Similarity=0.092 Sum_probs=112.8
Q ss_pred EEEEeCCCeEEEEecC--CC--eeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC-CceEEE---eCCCCee
Q 004914 67 IALGTHAGTVHILDFL--GN--QVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DEKMKF---DYHRPMK 137 (724)
Q Consensus 67 la~g~~dg~I~i~d~~--~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~~~~~---~~~~~v~ 137 (724)
.++...++.|.+|++. +. .+..+. +.+....++++|++++|++++ .++.|.+|++.. +.+... .......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 3444678999999994 33 234443 345677889999999886654 588999999973 443322 2222567
Q ss_pred EEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEec--cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCC
Q 004914 138 AISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAND 210 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~--~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~ 210 (724)
.++++|+ ++.+++++ .+|.+.+|+..-.+.....+. .+.....+++++ ++++.++ .++.|.+||+.+.
T Consensus 84 ~i~~~~~-----g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 84 HISTDHQ-----GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEEECCC-----CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 8999999 77776654 578899997753332211111 122335667777 5666544 5789999999864
Q ss_pred ceEEE-----ecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 211 QRITF-----IERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 211 ~~~~~-----i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
..+.. +..+. ...+..+.| ++++.+.++ .++.|.+|++..
T Consensus 159 g~l~~~~~~~~~~~~-----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 159 GHLVAQEPAEVTTVE-----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CcccccCCCceecCC-----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 32211 11111 112345677 677877666 489999999974
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=9.1e-07 Score=96.51 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=112.9
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (724)
..|.+||..|...+.+..+...+.+.+|+|+|+.|+.++.+ ..|.+||+.++....+.... ...+++|+|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpD----- 258 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPD----- 258 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCC-----
Confidence 36889999887777777788889999999999999988743 46999999888776654444 5567899999
Q ss_pred CCEEE-EecCCCe--EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CCc--EEEEEcCCCceEEEecCCC
Q 004914 150 SRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAG--VKVYDAANDQRITFIERPR 220 (724)
Q Consensus 150 ~~~l~-~g~~dg~--v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~~--i~i~d~~~~~~~~~i~~~~ 220 (724)
|+.++ +.+.+|. |.+|+.. +.....+..+.+.....+|+ |+.++.++ ++. |.++++.+++... +....
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~--~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g 335 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLG--SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG 335 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECC--CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC
Confidence 66664 4555564 6666653 33344455555555678898 66666553 334 6666776665432 22111
Q ss_pred CCCCCCCCCCceee-cCCCeEEEE--eCC--eEEEEEEeeCC
Q 004914 221 GSPRPELLLPHLVW-QDDTLLVIG--WGT--YIKIASIKTNQ 257 (724)
Q Consensus 221 ~~~~~~~~~~~l~~-~~~~~l~~g--~d~--~i~vw~~~~~~ 257 (724)
.......| ++++.++.. .++ .|.+|++.++.
T Consensus 336 ------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 336 ------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 12335678 677777765 222 58888876543
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.66 E-value=2.3e-06 Score=83.05 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=74.0
Q ss_pred EEEecCCE-EEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEE-EeCCCCEEEEeccCCceEEEeCCC-
Q 004914 59 CVAVAERM-IALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGSVVINSLFTDEKMKFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~~-la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~v~iwd~~~~~~~~~~~~~- 134 (724)
-|+.+.-+ ++....++.|.+|++.... ...+....+++.+++|||+|++|+. ..-|-.|.+|++.+.....+...+
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~ 134 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT 134 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc
Confidence 36666654 5556778999999996544 4567778889999999999976655 555889999999998887777666
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGL 158 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~ 158 (724)
.+..++|+|+ |++.+..+.
T Consensus 135 ~~kg~~f~~d-----g~f~ai~sR 153 (447)
T KOG4497|consen 135 NVKGYAFHPD-----GQFCAILSR 153 (447)
T ss_pred CceeEEECCC-----Cceeeeeec
Confidence 8899999999 777666543
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=4.1e-07 Score=90.30 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=114.1
Q ss_pred cCCEEEEEeCC--CeEEEEecCCCeeEEEcCCc-----------cceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC--
Q 004914 63 AERMIALGTHA--GTVHILDFLGNQVKEFPAHT-----------AAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD-- 125 (724)
Q Consensus 63 ~~~~la~g~~d--g~I~i~d~~~~~~~~~~~h~-----------~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~-- 125 (724)
+..++|+|+.. ..+.+||+.+. .+.|.+.. -.++++.|-+. ...|++++.-+.|++||.+.+
T Consensus 160 ~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 160 DPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 34578889988 88999999544 33443322 13567788877 778999999999999999874
Q ss_pred ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce-EeccCCCCeEEEEEeC--CEEEEE-cCC
Q 004914 126 EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ-VLHSGEGPVHVVKWRT--SLIAWA-NDA 200 (724)
Q Consensus 126 ~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~-~l~~~~~~V~~l~~~~--~~la~~-~d~ 200 (724)
.+..+.... +++++...|+ ++.+++|..-|.+..++.+ .+.... .+.+-.|.|+++..++ .+++.+ -|+
T Consensus 239 PV~~fd~~E~~is~~~l~p~-----gn~Iy~gn~~g~l~~FD~r-~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPS-----GNFIYTGNTKGQLAKFDLR-GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred ceeEeccccCcceeeeecCC-----CcEEEEecccchhheeccc-CceeeccccCCccCCcceEEEcCCCceEEeeccce
Confidence 455677777 9999999999 8999999999999998876 333333 3667789999999994 588877 599
Q ss_pred cEEEEEcCCCceEEE
Q 004914 201 GVKVYDAANDQRITF 215 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~ 215 (724)
.+||+|+.+.+++..
T Consensus 313 yvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 313 YVRIHDIKTRKLLHK 327 (412)
T ss_pred eEEEeecccchhhhh
Confidence 999999998776653
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.6e-06 Score=91.44 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=108.6
Q ss_pred eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC---CCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCC
Q 004914 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
.|.++|.+|...+.+..+...+.+.+|+|||+.|+..+. +..+.+|++.+++...+.... .+.+++|+|+ |
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD-----G 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD-----G 254 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC-----C
Confidence 688999988766666667778999999999999887643 346899999888766554333 5667899999 7
Q ss_pred CEEEEe-cCCCe--EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CCc--EEEEEcCCCceEEEecCCCC
Q 004914 151 RRFVAG-GLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAG--VKVYDAANDQRITFIERPRG 221 (724)
Q Consensus 151 ~~l~~g-~~dg~--v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~~--i~i~d~~~~~~~~~i~~~~~ 221 (724)
+.++.. +.+|. |.+|+.. +.....+..+...+....|+ |+.|+.++ ++. |.++++.++... .+....
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~--tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~- 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG- 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECC--CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC-
Confidence 777654 55554 6666553 33444444455567788998 66665553 334 444466665443 222211
Q ss_pred CCCCCCCCCceee-cCCCeEEEE--eCC--eEEEEEEeeC
Q 004914 222 SPRPELLLPHLVW-QDDTLLVIG--WGT--YIKIASIKTN 256 (724)
Q Consensus 222 ~~~~~~~~~~l~~-~~~~~l~~g--~d~--~i~vw~~~~~ 256 (724)
.......| ++++.++.. .++ .|.+||+.++
T Consensus 331 -----~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 331 -----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred -----CCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 11334667 677777665 232 4777877554
No 244
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2e-06 Score=94.01 Aligned_cols=193 Identities=16% Similarity=0.244 Sum_probs=134.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCC--CeeE---EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-----Cc
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLG--NQVK---EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-----DE 126 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~--~~~~---~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-----~~ 126 (724)
+...++.|.+..+. .+..+++|+... .... .-..|.-.+++.+++|+++++++|..||.|.+|.-.. -.
T Consensus 165 ~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 33455555555443 345577777733 2111 1134777789999999999999999999999995433 22
Q ss_pred eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
+..+.-|. .|++++|+++ |.++++|+..|.+.+|... ++. .+.++.-.++|..+.++ +.+.+.. .|+.|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~-----G~~LlSGG~E~VLv~Wq~~-T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSD-----GAYLLSGGREGVLVLWQLE-TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ceEEEecccccceeEEecC-----CceEeecccceEEEEEeec-CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 34566666 9999999999 8999999999999999886 333 66677788999999999 5665555 79999
Q ss_pred EEEEcCCCceEEEecCCCCC-----CCCCCCCCceee-c-CCCeEEEEeCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPRGS-----PRPELLLPHLVW-Q-DDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~-----~~~~~~~~~l~~-~-~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
.+....+.....++...... .+.......++. + .+..+..|..++|.+||+-+..
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 99988665544444333211 112233444444 2 4556666699999999987654
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.65 E-value=2.6e-06 Score=92.83 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=109.9
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (724)
..|.++|.++...+.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.++....+.... .+.+++|+|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD----- 244 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD----- 244 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-----
Confidence 36888888777666777777789999999999999887654 47999999988766555444 6778999999
Q ss_pred CCEEE-EecCCCe--EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CC--cEEEEEcCCCceEEEecCCC
Q 004914 150 SRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPR 220 (724)
Q Consensus 150 ~~~l~-~g~~dg~--v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~--~i~i~d~~~~~~~~~i~~~~ 220 (724)
++.|+ +.+.+|. +.+|+.. +.....+..+.+......|+ |+.++.++ ++ .|.++++.+++.... ....
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~ 321 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLD--GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRG 321 (417)
T ss_pred CCEEEEEECCCCCccEEEEECC--CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC
Confidence 66665 4555554 5555543 33344444444455566787 66665542 23 477788877654322 2111
Q ss_pred CCCCCCCCCCceee-cCCCeEEEE-eCC---eEEEEEEee
Q 004914 221 GSPRPELLLPHLVW-QDDTLLVIG-WGT---YIKIASIKT 255 (724)
Q Consensus 221 ~~~~~~~~~~~l~~-~~~~~l~~g-~d~---~i~vw~~~~ 255 (724)
.......| +++..++.+ .++ .|.+|++.+
T Consensus 322 ------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 322 ------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred ------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 12345667 577777776 433 577777654
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.65 E-value=3.2e-06 Score=92.18 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=109.6
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCC--CEEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDG--SVVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (724)
+|+|+|+.++.++.. ..|++||+.+.....+..+.+.+.+++|+|+|+.|+ +.+.+| .|.+|++.++....+..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 489999999887654 479999996554444555666677899999999776 444444 58889998877666655
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCC---cEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA---GVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~---~i~i 204 (724)
+. .....+|+|+ ++.++.++ .+|...+|.....+.....+..+...+....|+ |+.++.+ .++ .|.+
T Consensus 276 ~~~~~~~~~~s~d-----g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~ 350 (417)
T TIGR02800 276 GPGIDTEPSWSPD-----GKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAV 350 (417)
T ss_pred CCCCCCCEEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEE
Confidence 54 5567889998 77776554 344434443332343344444445556777888 6777666 443 6888
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
||+.++... .+.... ......| +++..|+.+
T Consensus 351 ~d~~~~~~~-~l~~~~-------~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 351 MDLDGGGER-VLTDTG-------LDESPSFAPNGRMILYA 382 (417)
T ss_pred EeCCCCCeE-EccCCC-------CCCCceECCCCCEEEEE
Confidence 888875443 222111 1123356 567766666
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=0.00016 Score=77.35 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=48.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEE-E-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKE-F-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~-~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (724)
.|.-+.+.+-+...+|.|.+|-+ +|.-... + ....+.|.+++|+.+|+.|..+..||.|.+-.++
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 46666778889999999999998 5543211 1 1244578999999999999999999988665544
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=8.7e-07 Score=84.84 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=128.9
Q ss_pred EEecCCEEEEEeCCCeEEEEecCC-Ce--eEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCceEE---EeC
Q 004914 60 VAVAERMIALGTHAGTVHILDFLG-NQ--VKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKMK---FDY 132 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~-~~--~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~ 132 (724)
|++.+..++++..+|.+.+.+.+. .. ++.+++|.-..+-..|+.. .+.+.+||+||.+..||++...... .+.
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 677788999999999999666532 22 4578999999988888753 4688999999999999999432222 344
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC----CEEEEEcCCcEEEEEc
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT----SLIAWANDAGVKVYDA 207 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~----~~la~~~d~~i~i~d~ 207 (724)
|. .|.+|.-+|. .+.++++|+.|-.+++|+.+..+++...- ...|.|+.+.+++ .+++++.-++.+|-++
T Consensus 209 H~~GV~SI~ss~~----~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 209 HTSGVVSIYSSPP----KPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred eecceEEEecCCC----CCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 55 8999988887 37899999999999999988555544321 2347899999883 4566666677788887
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEE-EEEEee
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIK-IASIKT 255 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~-vw~~~~ 255 (724)
..+..-..+..+. ...|......-.| .....+++| .|+.++ +|-.-+
T Consensus 284 ~~~~~e~~~~~~s-~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 284 SDKVLEFQIVLPS-DKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccccchheeeec-cccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 7543321111111 1222333334456 334567775 666655 775444
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=6.9e-06 Score=89.79 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=110.1
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCC--CEEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDG--SVVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (724)
+|+|+|+.|+..+.+ ..|.+|++.+.....+....+.+...+|+|+|+.|+ +.+.+| .|.+||+.++....+..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 699999998876543 468899996554444544445566789999999887 455555 57888999888776655
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-c-CC--cEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N-DA--GVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~-d~--~i~i 204 (724)
+. ......|+|+ ++.++..+ .+|...+|.....+.....+...........|+ |+.++.. . ++ .|.+
T Consensus 285 ~~~~~~~~~~spD-----g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~ 359 (430)
T PRK00178 285 HPAIDTEPFWGKD-----GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAA 359 (430)
T ss_pred CCCCcCCeEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEE
Confidence 55 6677899999 67665544 455544443332233232222222223446677 6677655 2 33 4788
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCe--EEEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTY--IKIASI 253 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~--i~vw~~ 253 (724)
||+.+++... +.... . .....| ++++.++.. .++. +.++++
T Consensus 360 ~dl~tg~~~~-lt~~~----~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 360 QDLQRGSVRI-LTDTS----L---DESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EECCCCCEEE-ccCCC----C---CCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 8988876533 22111 1 112357 577777665 3333 444444
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=6.7e-06 Score=86.26 Aligned_cols=183 Identities=14% Similarity=0.092 Sum_probs=130.7
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcC---CccceeEEEEc------C--------------CCCEEEEEeCCCCE
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPA---HTAAVNDLSFD------V--------------DGEYVGSCSDDGSV 117 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~---h~~~V~~l~~s------~--------------~g~~l~s~~~Dg~v 117 (724)
+...++|..+.||.+++|+. .++....|.. -++..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34568999999999999999 4554455533 23344444442 2 33457778889999
Q ss_pred EEEeccCCceEE-Ee--CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--
Q 004914 118 VINSLFTDEKMK-FD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-- 191 (724)
Q Consensus 118 ~iwd~~~~~~~~-~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-- 191 (724)
.+++...+++.. +. .|- +|+++.++.+ ...|.+++.|+.+..|... .....+........+.+++..+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-----~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-----LGCIYSVGADLKVVYILEK-EKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-----cCceEecCCceeEEEEecc-cceeeeeeccCCCccceEEEcCCC
Confidence 999999988764 33 344 9999999888 6899999999999998764 3444555566666788888884
Q ss_pred CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC-----CCeEEEE--eCCeEEEEEEeeCC
Q 004914 192 SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD-----DTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 192 ~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~-----~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
.+++++ .+.|++||+.+++.+.++..+.+ .+.++.| .. |..+.++ .+..+.+|-+....
T Consensus 157 ~~l~~a-s~~ik~~~~~~kevv~~ftgh~s------~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 157 KILLTA-SRQIKVLDIETKEVVITFTGHGS------PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred CEEEec-cceEEEEEccCceEEEEecCCCc------ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 455554 37899999999999998776654 3556666 22 4566655 56668889887633
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.55 E-value=1.3e-05 Score=77.91 Aligned_cols=187 Identities=12% Similarity=0.142 Sum_probs=114.2
Q ss_pred eEEEEecCC-EEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CC-------------------
Q 004914 57 ASCVAVAER-MIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DG------------------- 115 (724)
Q Consensus 57 i~~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg------------------- 115 (724)
..+|||+|+ .+.+...+-.|.+|++..+....++-....+..++|+|+|++.+.++. |.
T Consensus 96 ~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~ 175 (447)
T KOG4497|consen 96 SISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK 175 (447)
T ss_pred eeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence 457999996 555667789999999976654444444445688999999998877664 21
Q ss_pred ----------------CEEEEeccC-CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe-cccC-------
Q 004914 116 ----------------SVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS-KKWL------- 170 (724)
Q Consensus 116 ----------------~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~-~~~~------- 170 (724)
.+.+||-.- -++..+...-.+..++|+|. ++.+++|+.|+.+++-+ ..|.
T Consensus 176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~-----~qflavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC-----NQFLAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred CCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccc-----cceEEeeccchhhhhhceeeeeehhhhcc
Confidence 122222111 11112222228899999998 79999999999887653 0000
Q ss_pred ----------------------------------------Cc-----------cceEec------cCCCCeEEEEEe--C
Q 004914 171 ----------------------------------------GY-----------RDQVLH------SGEGPVHVVKWR--T 191 (724)
Q Consensus 171 ----------------------------------------~~-----------~~~~l~------~~~~~V~~l~~~--~ 191 (724)
.+ +...++ .....+.-++|+ .
T Consensus 251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00 000000 011234567888 3
Q ss_pred CEEEEEcCC---cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 192 SLIAWANDA---GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 192 ~~la~~~d~---~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
.++++-+|+ .+-+||++..+....+.... .+....| +....|+++ ....+++|....
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-------piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-------PIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhhcc-------ceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 566666664 58999998766544332211 2456778 455567766 666799997654
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.55 E-value=3.8e-07 Score=105.87 Aligned_cols=181 Identities=15% Similarity=0.211 Sum_probs=137.1
Q ss_pred CceEEEEec--CCEEEEEeCCCeEEEEec-CCCeeEEEc-CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE
Q 004914 55 DAASCVAVA--ERMIALGTHAGTVHILDF-LGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 55 ~~i~~~s~~--~~~la~g~~dg~I~i~d~-~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
+.+.|++.+ ..+.++|+.||.|++|.. .++.+..++ +....|+.+.|+.+|+.+..+..||.+.+|..........
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~ 2288 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSW 2288 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceecc
Confidence 446676654 347789999999999998 566665543 3448899999999999999999999999999986666677
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEe---cCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--CEEEEE-cCCcEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAG---GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVK 203 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g---~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~la~~-~d~~i~ 203 (724)
+.|. ..+.+.|-.. .++++ +.++.+.+|+....+....+-..|.+.++++++.+ +++.+| .+|.|+
T Consensus 2289 qchnk~~~Df~Fi~s-------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIGS-------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ccCCccccceeeeeh-------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 7777 7777777543 34443 45678999987655555545577999999999994 455555 799999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+||++..+.+.+++. |.....++.| ..|.++||++..-+
T Consensus 2362 l~D~rqrql~h~~~~---------------~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------------LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EeehHHHHHHHHhhh---------------hhhhheeeccCcccceEEEEccccc
Confidence 999998887766432 3345678888 88999999997643
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=1.5e-06 Score=96.58 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=131.2
Q ss_pred ecCCEEEEEeCCCeEEEEecCCC-eeEEEcCCccc-----eeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC
Q 004914 62 VAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAA-----VNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR 134 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~~~~-~~~~~~~h~~~-----V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~ 134 (724)
...+.++.++.+..+.+||.... ....+. +... ..-+-++++.-++++|+.-|.|.+|.... .....+.+|.
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHe 175 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHE 175 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccC
Confidence 35678999999999999999543 333333 2222 12233566777899999999999999875 3334678888
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCce
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
.|.++.++.+ |+++++.+.|..+++|...-......+..+|.+.|+.+.|.+..++++ .|.+.++|+... ..
T Consensus 176 G~iF~i~~s~d-----g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~ 249 (967)
T KOG0974|consen 176 GSIFSIVTSLD-----GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQ 249 (967)
T ss_pred CceEEEEEccC-----CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccc-ce
Confidence 9999999999 899999999999999987622233346778999999999996566555 799999997653 33
Q ss_pred EEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+..+..+.+. .+..+..+ +....+++ .|+.+++|++..+...
T Consensus 250 l~~y~~h~g~-----~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 250 LEVYDEHSGK-----GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred ehhhhhhhhc-----ceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 3343333211 12333333 34445555 9999999999876543
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=1.3e-05 Score=86.79 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=112.2
Q ss_pred EEEecCCEEE---EEeCC--CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CC----CEEEEeccC---C
Q 004914 59 CVAVAERMIA---LGTHA--GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DG----SVVINSLFT---D 125 (724)
Q Consensus 59 ~~s~~~~~la---~g~~d--g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg----~v~iwd~~~---~ 125 (724)
.|+|+|+.++ +...+ ..|.+.++.+.....+....+.....+|+|||+.|+..+. +| .+..|++.+ +
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g 270 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG 270 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence 5999987532 33333 3677778866555455444555566899999998886653 23 344477664 2
Q ss_pred ceEEEeCC-C-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccC--CccceEeccCCCCeEEEEEe--CCEEEEE-
Q 004914 126 EKMKFDYH-R-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWL--GYRDQVLHSGEGPVHVVKWR--TSLIAWA- 197 (724)
Q Consensus 126 ~~~~~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~--~~~~~~l~~~~~~V~~l~~~--~~~la~~- 197 (724)
....+... . .....+|+|+ |+.++..+ .+|...+|..... +.....+....+.+....|+ |+.|+..
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPD-----G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPD-----GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cceEeecCCCCCcCCeEECCC-----CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 33334322 2 4467899999 77776654 5676666654332 22334444445567788898 6777655
Q ss_pred c-C--CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--e--CCeEEEEEEeeC
Q 004914 198 N-D--AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--W--GTYIKIASIKTN 256 (724)
Q Consensus 198 ~-d--~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~--d~~i~vw~~~~~ 256 (724)
. + ..|.+||+.+++........ .......| ++++.|+.. . ...|++|++..+
T Consensus 346 ~~~g~~~I~v~dl~~g~~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 346 VIKGVRQICVYDLATGRDYQLTTSP-------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred cCCCCcEEEEEECCCCCeEEccCCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3 2 35899999888764332111 12345678 577777654 2 234777776543
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.51 E-value=6.4e-06 Score=86.38 Aligned_cols=139 Identities=14% Similarity=0.228 Sum_probs=115.2
Q ss_pred cCCEEEEEeCCCeEEEEecCCCee-EEE--cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeCCC-Cee
Q 004914 63 AERMIALGTHAGTVHILDFLGNQV-KEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYHR-PMK 137 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~~~~-~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~-~v~ 137 (724)
+-..++.|+..|.|.+++..+..+ ..+ ..|.+.|+++.++.+-..|-|++.|+.+..|+...+.... ++... .+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 445789999999999999966555 333 4599999999999999999999999999999999877654 56666 899
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-------CCEEEEE--cCCcEEEEEcC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-------TSLIAWA--NDAGVKVYDAA 208 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-------~~~la~~--~d~~i~i~d~~ 208 (724)
+++.+|+ +..+++++. +|.+|+.. .+.....+.+|.++|.+++|- |.++.++ .+..+.+|-+.
T Consensus 149 sl~is~D-----~~~l~~as~--~ik~~~~~-~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 149 SLCISPD-----GKILLTASR--QIKVLDIE-TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred eEEEcCC-----CCEEEeccc--eEEEEEcc-CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999 899998886 99999886 677888899999999999997 4555444 46778888776
Q ss_pred C
Q 004914 209 N 209 (724)
Q Consensus 209 ~ 209 (724)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 4
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.6e-05 Score=86.92 Aligned_cols=168 Identities=10% Similarity=0.101 Sum_probs=108.6
Q ss_pred eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCC
Q 004914 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
.|.++|.+|...+.+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++....+.... .+.+.+|+|+ |
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD-----G 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD-----G 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC-----C
Confidence 4778888887766777777889999999999999877643 35889999988776654434 5667899999 7
Q ss_pred CEEE-EecCCCe--EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CC--cEEEEEcCCCceEEEecCCCC
Q 004914 151 RRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPRG 221 (724)
Q Consensus 151 ~~l~-~g~~dg~--v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~--~i~i~d~~~~~~~~~i~~~~~ 221 (724)
+.++ +.+.+|. +.+++.. +.....+..+.+......|+ |+.++.++ ++ .|.++++.+++..... ...
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLA--SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECC--CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC-
Confidence 7666 4555664 5555543 33444455555556677888 56555442 33 4777788777643321 111
Q ss_pred CCCCCCCCCceee-cCCCeEEEE--eCC--eEEEEEEeeC
Q 004914 222 SPRPELLLPHLVW-QDDTLLVIG--WGT--YIKIASIKTN 256 (724)
Q Consensus 222 ~~~~~~~~~~l~~-~~~~~l~~g--~d~--~i~vw~~~~~ 256 (724)
.......| ++++.++.. .++ .|.+||+.++
T Consensus 331 -----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 331 -----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred -----CCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 11223567 577777665 233 3677777654
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=2.2e-05 Score=85.76 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=108.0
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEE-EeCCCC--EEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGS--VVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~--v~iwd~~~~~~~~~~~ 132 (724)
.|+|+|+.|+..+.+ ..|++||+.+.....+....+.....+|+|+|+.|+. .+.+|. |.++|+.++....+..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence 699999998876543 3688889855444344333334457899999998765 566675 7777888887776665
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-c-CCc--EEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N-DAG--VKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~-d~~--i~i 204 (724)
+. .....+|+|+ ++.++..+ .+|...+|.....+.....+...........|+ |+.++.. . ++. |.+
T Consensus 304 ~~~~~~~p~wSpD-----G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 304 HRAIDTEPSWHPD-----GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred CCCCccceEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEE
Confidence 55 6678899999 67665544 455555654433333333332222223446777 6666655 3 343 555
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCe--EEEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTY--IKIASI 253 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~--i~vw~~ 253 (724)
+|+.+++... +.... ......| +++..++.. .++. +++++.
T Consensus 379 ~dl~~g~~~~-lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 379 QDLETGAMQV-LTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EECCCCCeEE-ccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 6777765432 22111 0112356 577766655 4443 555554
No 258
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.3e-06 Score=87.75 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=102.0
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc
Q 004914 97 NDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (724)
Q Consensus 97 ~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (724)
..++|+.+|..+++|+.||++|||+..+ ........|. .|.++.|+|+ |+.+++-+.| ..++|+.. ++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d-----gk~lasig~d-~~~VW~~~-~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD-----GKFLASIGAD-SARVWSVN-TGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC-----CcEEEEecCC-ceEEEEec-cCchh
Confidence 5689999999999999999999999665 4444455555 9999999999 8999999998 89999876 45333
Q ss_pred eEec--cCCCCeEEEEEe--C---C-EEEEE-c-CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 175 QVLH--SGEGPVHVVKWR--T---S-LIAWA-N-DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 175 ~~l~--~~~~~V~~l~~~--~---~-~la~~-~-d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
.... ..+-....+.|. + . ++++. . -+.|+.|++.....-..+.......++ ..+.++.. .+|++++.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEe
Confidence 3222 122334456666 2 1 44444 3 456788777643321111111111111 13555666 689999999
Q ss_pred -eCCeEEEEEEeeCC
Q 004914 244 -WGTYIKIASIKTNQ 257 (724)
Q Consensus 244 -~d~~i~vw~~~~~~ 257 (724)
.+|.|-|++..+-+
T Consensus 300 T~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQ 314 (398)
T ss_pred ccCCcEEEEEeceee
Confidence 99999999987644
No 259
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=6.4e-05 Score=79.73 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 91 AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 91 ~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
.....|.+++++|+.+.++.|+.||.|.+||...+........-.++.++|||+ |..|++|+..|.+.+||....
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~-----gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPD-----GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCC-----CcEEEEEcCCceEEEEEeecC
Confidence 466789999999999999999999999999998764443333237899999999 899999999999999988643
Q ss_pred CccceEecc
Q 004914 171 GYRDQVLHS 179 (724)
Q Consensus 171 ~~~~~~l~~ 179 (724)
.-+...+..
T Consensus 332 pi~~qLlsE 340 (545)
T PF11768_consen 332 PIKMQLLSE 340 (545)
T ss_pred ccceeeccc
Confidence 333333333
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=8.3e-07 Score=90.46 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=123.1
Q ss_pred EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE-eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
..+..|.+.|+.+.|+..|..++|||.|..|.+||..++.. ..+ .+|. .|..-.|-|. .+.+.+++++.||.++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC---CCCcCceeccccCcee
Confidence 46778999999999999999999999999999999988554 333 4555 7777778886 2347899999999999
Q ss_pred EEecccCCc--cceEeccCCCCeEEEEEe---C-CEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--c
Q 004914 164 LNSKKWLGY--RDQVLHSGEGPVHVVKWR---T-SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--Q 235 (724)
Q Consensus 164 l~~~~~~~~--~~~~l~~~~~~V~~l~~~---~-~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~ 235 (724)
+-...-.+. ....+..|.++|..++.. + .++.++.|+.+.-+|++++.....+...............++. .
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 876554442 245567799999999887 2 5666778999999999877554433211111110111222333 3
Q ss_pred CCCeEEEE-eCCeEEEEEEeeCCCCCCCC
Q 004914 236 DDTLLVIG-WGTYIKIASIKTNQSNVANG 263 (724)
Q Consensus 236 ~~~~l~~g-~d~~i~vw~~~~~~~~~~~~ 263 (724)
+...+++| .+..+++||.+.-.....++
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccc
Confidence 55577777 88999999998766554444
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=4e-05 Score=83.70 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=105.1
Q ss_pred eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CC--CEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCC
Q 004914 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DG--SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (724)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg--~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (724)
.+.++|.+|...+.+..+...+.+..|+|||+.|+..+. +| .|.+||+.+++...+.... ...+.+|+|+ +
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD-----G 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD-----G 273 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC-----C
Confidence 677778877766666677788999999999999887654 33 5888899887765554333 4567899999 7
Q ss_pred CEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CC--cEEEEEcCCCceEEEecCCCCCC
Q 004914 151 RRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPRGSP 223 (724)
Q Consensus 151 ~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~--~i~i~d~~~~~~~~~i~~~~~~~ 223 (724)
+.++ +.+.+|...+|..+..+.....+..+........|+ |+.++.++ ++ .|.++|+.+++.... ....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g--- 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEG--- 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCC---
Confidence 7665 456677655554333344444455555556778888 56665543 33 466677777764432 1111
Q ss_pred CCCCCCCceee-cCCCeEEEE--eCCeEEEEEE
Q 004914 224 RPELLLPHLVW-QDDTLLVIG--WGTYIKIASI 253 (724)
Q Consensus 224 ~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~ 253 (724)
.......| ++++.++.. .++..++|-+
T Consensus 350 ---~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 350 ---EQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ---CCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 01223467 577777665 3444455443
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=6e-07 Score=60.95 Aligned_cols=38 Identities=26% Similarity=0.621 Sum_probs=35.7
Q ss_pred CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEe
Q 004914 84 NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (724)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (724)
+.+..+.+|.++|++++|+|++.+|+||+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999999997
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=0.0028 Score=72.61 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=72.2
Q ss_pred eEEEEecCCEEEE-----EeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEe---CCCCEEEEeccC---C
Q 004914 57 ASCVAVAERMIAL-----GTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS---DDGSVVINSLFT---D 125 (724)
Q Consensus 57 i~~~s~~~~~la~-----g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~---~Dg~v~iwd~~~---~ 125 (724)
-.+|.-||.++|+ .+....|++||.+|..-..-..-.+.=.+++|-|.|..+++.. .|+.|.++.-++ |
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 4578889999988 3444799999998654322222333345689999999999864 456788887665 2
Q ss_pred ce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEE---ecCCCeEEEEec
Q 004914 126 EK-MKFDYHR-PMKAISLDPDYTRKMSRRFVA---GGLAGHLYLNSK 167 (724)
Q Consensus 126 ~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~---g~~dg~v~l~~~ 167 (724)
.. ..+.... +|..++|+.+ +..+++ ......|.+|..
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~-----sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSN-----SDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccCCcccccchheeeecCC-----CCceeeeecccccceEEEEEe
Confidence 21 2234444 6999999998 777777 444445999954
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.39 E-value=3.8e-06 Score=82.19 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=76.3
Q ss_pred EEEEeCCCeEEEEec---CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--eEEEeCCC-CeeEEE
Q 004914 67 IALGTHAGTVHILDF---LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--KMKFDYHR-PMKAIS 140 (724)
Q Consensus 67 la~g~~dg~I~i~d~---~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--~~~~~~~~-~v~~v~ 140 (724)
..+|...|.|.+..+ .-..+.++.+|.+.|++++|++....+.||..|..|.+||+..++ ...+.+|. .|..+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 345556666665554 234467889999999999999999999999999999999997643 45567777 888887
Q ss_pred eCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 141 LDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
..+. .+.+++++.||.|.+|+
T Consensus 248 ~~~~-----t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 248 YAQH-----TRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhh-----heeeeeccCCCeEEEEe
Confidence 7776 68999999999999995
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=4.6e-06 Score=83.53 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=103.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe-----eEEEcCCccceeEEEEcCCCCEEEE---EeCCCCEEEEeccCCceEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDVDGEYVGS---CSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~~g~~l~s---~~~Dg~v~iwd~~~~~~~~~ 130 (724)
..++.++.+|++..+....+++..++. ...+. -...-+.+.|..+...+.. +++...+.+|....+....+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 355678899999999888888873332 11111 1122344455555554444 44555666777666666666
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEE-cCCcEEEEEc
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~-~d~~i~i~d~ 207 (724)
-+|- .++.|+|+|+ ++.+++++.|+.|++-...-.-.-....-+|+.-|..++.- +..+.++ .|+++++||.
T Consensus 148 lGhvSml~dVavS~D-----~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPD-----DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhheeeecCC-----CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 6777 9999999999 79999999999999843210001122234688889999888 4444444 7999999999
Q ss_pred CCCceEEEecCC
Q 004914 208 ANDQRITFIERP 219 (724)
Q Consensus 208 ~~~~~~~~i~~~ 219 (724)
.+|+.+..+...
T Consensus 223 ~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 223 TSGKLLDTCDLS 234 (390)
T ss_pred ccCCcccccchh
Confidence 999988655443
No 266
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.35 E-value=7.2e-06 Score=89.86 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=109.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---------CCEEEEeccC-C
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---------GSVVINSLFT-D 125 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---------g~v~iwd~~~-~ 125 (724)
++-+..+++.+.+|...|+|.+-|.+ .+.++++.+|++.|.+ |+-.|+.|+|||.. .-|+|||++. .
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 56677789999999999999999994 5568999999999975 55669999999854 4589999998 4
Q ss_pred ceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc-cCCccceEe--ccCCCCeEEEEEe--CCEEEEE-cC
Q 004914 126 EKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-WLGYRDQVL--HSGEGPVHVVKWR--TSLIAWA-ND 199 (724)
Q Consensus 126 ~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~~~~~~~~l--~~~~~~V~~l~~~--~~~la~~-~d 199 (724)
.+..+..+....-+.|+|.+ ...+++.+..|...+.+.. |......+. ......+.++.++ |+.++.+ .+
T Consensus 258 al~PI~~~~~P~flrf~Psl----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 258 ALSPIQFPYGPQFLRFHPSL----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred ccCCcccccCchhhhhcccc----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 44455555544668899997 5778888888998876532 222222222 2333447777777 7999999 69
Q ss_pred CcEEEEEcC
Q 004914 200 AGVKVYDAA 208 (724)
Q Consensus 200 ~~i~i~d~~ 208 (724)
|.|.+|--+
T Consensus 334 g~v~~wa~~ 342 (1118)
T KOG1275|consen 334 GHVNLWADR 342 (1118)
T ss_pred CcEeeecCC
Confidence 999999844
No 267
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.6e-05 Score=81.39 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=144.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEE-cCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccC-Cce---EEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEF-PAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFT-DEK---MKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~-~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~-~~~---~~~ 130 (724)
.|...|..+++|+.|..|.+||. .+.....+ .+|...|..-.|-|. ...+++++.||.|++-.+.. +.+ ..+
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 35557999999999999999999 45544343 568888877778774 45699999999999887654 332 345
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCC---CeEEEEEe---CCEEEEE-cCC
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEG---PVHVVKWR---TSLIAWA-NDA 200 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~---~V~~l~~~---~~~la~~-~d~ 200 (724)
..|. +|+-++..|+ +...|.+++.|+.+.-++.+-.. .+..+-..+.. ...+++.+ ...++++ .|.
T Consensus 229 ~~h~g~vhklav~p~----sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPD----SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ccccCccceeeecCC----CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 6677 9999999998 46789999999999877765222 11111111222 34456655 2455555 789
Q ss_pred cEEEEEcCCCc------eEEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCCeEEEEEEeeCCCCCCCCccccCCCeE
Q 004914 201 GVKVYDAANDQ------RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQ 272 (724)
Q Consensus 201 ~i~i~d~~~~~------~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 272 (724)
-+++||.+.-. .+..+-.+.........++++.++ ++.-|.++ .|.-|+++.-.-+. +....+.......
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~--G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD--GSEPDPSSPREQY 382 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc--CCCCCCCcchhhc
Confidence 99999987421 122221111111223346778884 66555555 88889998332221 1111100100111
Q ss_pred EEE-EEEeeeceEEEeeeecC--CceEEEEe
Q 004914 273 VDI-VASFQTSYYISGIAPFG--DCLVVLAY 300 (724)
Q Consensus 273 ~~~-~~~~~~~~~i~gi~~~~--~~l~~l~~ 300 (724)
+.. .+-..-...|-|+..|| ..+++-+.
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecC
Confidence 211 11122244588888888 66666654
No 268
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.35 E-value=4.4e-05 Score=80.64 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=113.3
Q ss_pred CEE-EEEeCCCeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEe
Q 004914 65 RMI-ALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISL 141 (724)
Q Consensus 65 ~~l-a~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~ 141 (724)
+++ ++-..+|.|.+.|.. .+.+..+.........+.++|||+++.+++.||.|.++|+.++++. ++.......++++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 444 455678999999994 5556777655444455789999999999999999999999997765 5666667789999
Q ss_pred CCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEecc-------CCCCeEEEEEe---CCEEEEEc-CCcEEEEEcCC
Q 004914 142 DPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHS-------GEGPVHVVKWR---TSLIAWAN-DAGVKVYDAAN 209 (724)
Q Consensus 142 ~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~-------~~~~V~~l~~~---~~~la~~~-d~~i~i~d~~~ 209 (724)
+++ |++++++. ..+.+.+++.. ..+..+.+.. ....+.++..+ +.+++.-. .+.|.+.|...
T Consensus 86 s~D-----G~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 86 SPD-----GKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp --T-----TTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cCC-----CCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999 88887765 67899998764 3344444432 23456777665 34666654 46677778765
Q ss_pred CceEE--EecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 210 DQRIT--FIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 210 ~~~~~--~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
.+.+. .+... .+.....| +++++++++ ..+.|-++|..++
T Consensus 160 ~~~~~~~~i~~g-------~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 160 PKNLKVTTIKVG-------RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SSCEEEEEEE---------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ccccceeeeccc-------ccccccccCcccceeeecccccceeEEEeeccc
Confidence 44332 33221 12345666 567777666 6778888886654
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=2e-05 Score=77.27 Aligned_cols=196 Identities=12% Similarity=0.200 Sum_probs=125.3
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC--C----eeEEEcCCc------------cceeEEEEcCCCC--EEEEEe
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG--N----QVKEFPAHT------------AAVNDLSFDVDGE--YVGSCS 112 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~--~----~~~~~~~h~------------~~V~~l~~s~~g~--~l~s~~ 112 (724)
+-+++ +...|.+||+|..+|.|.+|..+. . ....++.|. ..|+.+.|.++++ .++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 55666 556799999999999999997621 1 124455553 4688899988765 577778
Q ss_pred CCCCEEEEeccCCc-----------------------------------eEE--EeCCC-CeeEEEeCCCCCCCCCCEEE
Q 004914 113 DDGSVVINSLFTDE-----------------------------------KMK--FDYHR-PMKAISLDPDYTRKMSRRFV 154 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~-----------------------------------~~~--~~~~~-~v~~v~~~p~~~~~~~~~l~ 154 (724)
.|.+|++|-+.... +.+ -..|. -|+++.++.+ ...++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-----~Et~l 180 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-----KETFL 180 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-----cceEe
Confidence 89999999765311 000 13455 7888999888 56666
Q ss_pred EecCCCeEEEEecccCCccceEe--ccC-----CCCeEEEEEeC---CEEEEE-cCCcEEEEEcCCCceE----EEecCC
Q 004914 155 AGGLAGHLYLNSKKWLGYRDQVL--HSG-----EGPVHVVKWRT---SLIAWA-NDAGVKVYDAANDQRI----TFIERP 219 (724)
Q Consensus 155 ~g~~dg~v~l~~~~~~~~~~~~l--~~~-----~~~V~~l~~~~---~~la~~-~d~~i~i~d~~~~~~~----~~i~~~ 219 (724)
++ .|=.|.+|..........++ +.+ ..-|++..|++ ++++.+ +.|+|++.|++..... +.++.|
T Consensus 181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 65 45688999765444333333 222 24578888883 455544 7999999999854321 122333
Q ss_pred CCCCC------CCCCCCceee-cCCCeEEEEeCCeEEEEEEeeC
Q 004914 220 RGSPR------PELLLPHLVW-QDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 220 ~~~~~------~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
..... ....+..+.| .+|+++++-.--+|++||+.-.
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 22111 1123455677 4567666667789999999643
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.29 E-value=2.7e-05 Score=76.39 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=110.6
Q ss_pred CceEEEE--ecCCEEEEEeCCCeEEEEecC--C---CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc-C--
Q 004914 55 DAASCVA--VAERMIALGTHAGTVHILDFL--G---NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF-T-- 124 (724)
Q Consensus 55 ~~i~~~s--~~~~~la~g~~dg~I~i~d~~--~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~-- 124 (724)
..+++++ +....|.+|-.+|++.-+.+. . ...+....|..+|..+-|+...+.+++++.|..+. |... .
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~ 147 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGN 147 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCC
Confidence 4455544 456689999999999988772 1 22466778999999999998888888888776442 2110 0
Q ss_pred ----------------------------------------CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 125 ----------------------------------------DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 125 ----------------------------------------~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
+.+.++.+|. ++.+.+|.|. .+.+.+|..|..+.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-----~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-----QRLLFSGASDHSVI 222 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-----CcEEEeccccCceE
Confidence 1134566777 9999999998 78999999999999
Q ss_pred EEecccCCccceEeccCCCCeEEEEEe---CCEEEEEcCCcEEEEEcCCC
Q 004914 164 LNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAAND 210 (724)
Q Consensus 164 l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~~d~~i~i~d~~~~ 210 (724)
+|+..-.......+.+|.+.|..+... -++++++.|+.|-+|++...
T Consensus 223 ~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999864334455667788888777665 35666778999999998743
No 271
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=98.25 E-value=7.4e-06 Score=73.26 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=71.7
Q ss_pred CeEEEeccCCcccccCcccCCccccccccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchhhH-HHH
Q 004914 325 PEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHI-AWL 403 (724)
Q Consensus 325 ~~l~iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i-~~l 403 (724)
..|.+|+.-+..+..+......++.... |+.+ ...++||++|.+.|+.+...+.+..+ +.+
T Consensus 52 ~~l~~vn~L~~~vV~e~~~~~~~~~~~g----l~~D--------------~~~~t~W~ys~~~I~ei~i~~E~r~vWk~y 113 (147)
T PF05131_consen 52 DRLIAVNRLNNKVVFEESLLETGGKILG----LCRD--------------PSSNTFWLYSSNSIFEIVINNEDRDVWKIY 113 (147)
T ss_pred CEEEEEEecCCcEEEEEEeccCCcceee----EEEc--------------CCCCeEEEEeCCeeEEEEcCcchHHHHHHH
Confidence 6788887665444333322333443333 5554 35778999999999999999999766 889
Q ss_pred HhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcc
Q 004914 404 LEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVE 440 (724)
Q Consensus 404 l~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~ 440 (724)
+++|+|++|+++|+.. ..+++.|..+++++||++
T Consensus 114 l~~~~fd~Al~~~~~~---~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 114 LDKGDFDEALQYCKTN---PAQRDQVLIKQADHLFQK 147 (147)
T ss_pred HhcCcHHHHHHHccCC---HHHHHHHHHHHHHHHhhC
Confidence 9999999999999975 346889999999999975
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=9.5e-05 Score=79.04 Aligned_cols=216 Identities=14% Similarity=0.172 Sum_probs=137.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC-----Ce-----------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEec
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG-----NQ-----------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~-----~~-----------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~ 122 (724)
.|....++||.|+.||.+++..+.. +. -+++.+|+++|.-+.|+.+.+.+-|...+|-|.+|-+
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 4666788999999999999987621 11 2467899999999999999999999999999999999
Q ss_pred cCCceEE---EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--EeccCCCCeEEEEEeC--CE-
Q 004914 123 FTDEKMK---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSGEGPVHVVKWRT--SL- 193 (724)
Q Consensus 123 ~~~~~~~---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~~~~~~V~~l~~~~--~~- 193 (724)
.++.... -+..+ .|.+++|..+ |..++....||.|.+-..+ |.... .+. ......+.|+. ..
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~d-----G~kIcIvYeDGavIVGsvd--GNRIwgKeLk--g~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLD-----GTKICIVYEDGAVIVGSVD--GNRIWGKELK--GQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCC-----CcEEEEEEccCCEEEEeec--cceecchhcc--hheccceeecccHHHH
Confidence 8876431 22233 8899999999 8999999999998875432 32211 111 11234677873 23
Q ss_pred EEEEcCCcEEEEEcCCCceE-----EEecCCCCCCCCCCCCCceeec---------CCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 194 IAWANDAGVKVYDAANDQRI-----TFIERPRGSPRPELLLPHLVWQ---------DDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 194 la~~~d~~i~i~d~~~~~~~-----~~i~~~~~~~~~~~~~~~l~~~---------~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
++.-..|.+.+||....-.+ ..+.........+..++.+.|. +...|+++ .+|.+.+..-.....
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 33335788899987643110 0011111111111224555562 55678888 778887764433221
Q ss_pred CCCCCccccCCCeEEEEEEEeeeceEEEeeeecC-Cc-eEEEEe
Q 004914 259 NVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG-DC-LVVLAY 300 (724)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~-~~-l~~l~~ 300 (724)
+ ..+.+.+.+.|+.|-. .. +++.+.
T Consensus 252 P-----------------vv~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 252 P-----------------VVVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred C-----------------eEEecccEeecceecCCCcEEEEccC
Confidence 1 2355667888888866 33 344444
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.23 E-value=0.0001 Score=69.95 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=105.0
Q ss_pred EEEEeCCCeEEEEecCCCeeEEEcCCcc--ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--eE--EEeCCC-CeeEE
Q 004914 67 IALGTHAGTVHILDFLGNQVKEFPAHTA--AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--KM--KFDYHR-PMKAI 139 (724)
Q Consensus 67 la~g~~dg~I~i~d~~~~~~~~~~~h~~--~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--~~--~~~~~~-~v~~v 139 (724)
+..++.|.+++++++.+...+ +..|.. .+.++++++++++.++.+....|..|.+.... .. ...... .-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~-~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNK-FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred eeeccCCcceeEEEEecCccc-ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 445566666676666544321 122333 38889999999999999999999999987632 11 222222 55677
Q ss_pred EeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc----eEeccCCCCeEEEEEe--C--CEEEEE-cCCcEEEEEcCCC
Q 004914 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD----QVLHSGEGPVHVVKWR--T--SLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~----~~l~~~~~~V~~l~~~--~--~~la~~-~d~~i~i~d~~~~ 210 (724)
.|+.. ...||+++.||.+.+|+.+..+... ..-..|.|.+..+.|+ | .++..+ .-+.+.+.|++++
T Consensus 210 S~s~~-----~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 210 SFSEN-----DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred eeccC-----cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 88877 7899999999999999988766332 2234488999999999 3 566666 5678999999998
Q ss_pred ceEEEecCC
Q 004914 211 QRITFIERP 219 (724)
Q Consensus 211 ~~~~~i~~~ 219 (724)
.....+..+
T Consensus 285 ~~~q~I~i~ 293 (344)
T KOG4532|consen 285 VNHQVIVIP 293 (344)
T ss_pred ceeeEEecC
Confidence 777655444
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=0.00046 Score=82.75 Aligned_cols=193 Identities=14% Similarity=0.171 Sum_probs=118.9
Q ss_pred EEEEecCCEEEEE-eCCCeEEEEecCCCeeEEEcCC-----------------ccceeEEEEcC-CCCEEEEEeCCCCEE
Q 004914 58 SCVAVAERMIALG-THAGTVHILDFLGNQVKEFPAH-----------------TAAVNDLSFDV-DGEYVGSCSDDGSVV 118 (724)
Q Consensus 58 ~~~s~~~~~la~g-~~dg~I~i~d~~~~~~~~~~~h-----------------~~~V~~l~~s~-~g~~l~s~~~Dg~v~ 118 (724)
.++.++++.|.++ +.++.|+++|..+..+.++.+- -..-++++++| +|..+++.+.++.|+
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 3566666655444 4567899999866666555221 01235789999 566777888889999
Q ss_pred EEeccCCceEEEeCC----------------CCeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccceEecc--
Q 004914 119 INSLFTDEKMKFDYH----------------RPMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHS-- 179 (724)
Q Consensus 119 iwd~~~~~~~~~~~~----------------~~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~l~~-- 179 (724)
+||..++.+..+.+. ...++++++|+ ++ .+++.+.++.|++|+.. .+.. ..+.+
T Consensus 709 v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd-----G~~LYVADs~n~~Irv~D~~-tg~~-~~~~gg~ 781 (1057)
T PLN02919 709 EYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD-----LKELYIADSESSSIRALDLK-TGGS-RLLAGGD 781 (1057)
T ss_pred EEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCC-----CCEEEEEECCCCeEEEEECC-CCcE-EEEEecc
Confidence 999987765443211 14567999998 55 56666777899999764 2211 11100
Q ss_pred ------------CCC--------CeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCC-CC------CCCCCCC
Q 004914 180 ------------GEG--------PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPR-GS------PRPELLL 229 (724)
Q Consensus 180 ------------~~~--------~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~-~~------~~~~~~~ 229 (724)
..+ .-.+++++ |.++++. .++.|++||..++.......... +. ...-..+
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 001 12467777 5655554 68899999998876654432111 00 0011134
Q ss_pred Cceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 230 PHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 230 ~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+++ .+++.+++. .+++|++||+.++.
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 45666 567666655 78899999998764
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=3.8e-06 Score=86.64 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=117.4
Q ss_pred cCCEEEEEeCCCeEEEEec--CCCe------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-E---
Q 004914 63 AERMIALGTHAGTVHILDF--LGNQ------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-F--- 130 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~--~~~~------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~--- 130 (724)
+.+.+++++.|.+|++|.+ .|.. ..+++.|+.+|+++.|-.+-++++++ ||-+.+||..-+.... +
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 4567889999999999998 3332 34678899999999999998888876 7899999987665432 2
Q ss_pred eCCCCeeEEEeCCCCCCCCCCEEEEe-cCCCeEEEEecccCC--ccceEe--ccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 131 DYHRPMKAISLDPDYTRKMSRRFVAG-GLAGHLYLNSKKWLG--YRDQVL--HSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g-~~dg~v~l~~~~~~~--~~~~~l--~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
..+..+..+.--|+. ....++.| +...+|++++.+--+ ...++. .+..+.+.+++.. |+.++.+ ++|.|
T Consensus 824 pk~~a~~~ikcl~nv---~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENV---DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred cccCCCceeEecccC---cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 122233333333431 12344444 677889998765222 112222 2344567788776 8899888 89999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEE-EEEeeC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKI-ASIKTN 256 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~v-w~~~~~ 256 (724)
.+.|.++|+.+..+....-. ...++-+.++.|+.. .|.++-| |....+
T Consensus 901 ~~LDaR~G~vINswrpmecd------llqlaapsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 901 AILDARNGKVINSWRPMECD------LLQLAAPSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EEEecCCCceeccCCcccch------hhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence 99999999988765432210 111222344445544 6666666 654443
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=1.5e-05 Score=75.32 Aligned_cols=148 Identities=13% Similarity=0.195 Sum_probs=99.6
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCe--eEEEcC-CccceeEEEEcCCCCEEEEEe-----CCCCEEEEeccCCceE
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ--VKEFPA-HTAAVNDLSFDVDGEYVGSCS-----DDGSVVINSLFTDEKM 128 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~--~~~~~~-h~~~V~~l~~s~~g~~l~s~~-----~Dg~v~iwd~~~~~~~ 128 (724)
.+..+..++.+++|..||.+.+++..... .+.+.. |.+ -.+.+....++.+.+++ .-+..++|+++-.+..
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccc
Confidence 34456667889999999999999874311 111211 222 12223334455555543 2345667777653322
Q ss_pred EE--eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---C-CEEEEEcCCcE
Q 004914 129 KF--DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T-SLIAWANDAGV 202 (724)
Q Consensus 129 ~~--~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~-~~la~~~d~~i 202 (724)
.. .....|++++-+|. +.+.+++|+.||.+.+|+.+........+..|+.+|+.+.|+ | +++.++.||.+
T Consensus 173 ~~~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 21 22226999999998 578899999999999999875456667778899999999999 3 55666689999
Q ss_pred EEEEcCC
Q 004914 203 KVYDAAN 209 (724)
Q Consensus 203 ~i~d~~~ 209 (724)
-.||..+
T Consensus 249 w~wdas~ 255 (319)
T KOG4714|consen 249 WHWDAST 255 (319)
T ss_pred EEEcCCC
Confidence 9999875
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.15 E-value=3.5e-05 Score=74.12 Aligned_cols=180 Identities=11% Similarity=-0.005 Sum_probs=115.0
Q ss_pred EEEEEeCCCeEEEEecCCCe-eEEEcC---Cccc---eeEEEEcCCCCEEEEEeCCCCEEEEeccCC---ceEEEeCCC-
Q 004914 66 MIALGTHAGTVHILDFLGNQ-VKEFPA---HTAA---VNDLSFDVDGEYVGSCSDDGSVVINSLFTD---EKMKFDYHR- 134 (724)
Q Consensus 66 ~la~g~~dg~I~i~d~~~~~-~~~~~~---h~~~---V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~---~~~~~~~~~- 134 (724)
.++.....|.|.++...... ...+++ -.-. -.++.|++.|..++++-.+|.+.+-+.... ++..++.|.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 44555667778877764332 122222 1112 346788999999999999999985554443 334577888
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcC-
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA- 208 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~- 208 (724)
+.+...|+.. ..+.+.+|+.||.+..|+.+..+..... ...|...|.+|.-+ +.+|++| -|..|++||.+
T Consensus 167 E~Wta~f~~~----~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 167 EAWTAKFSDK----EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeeeecccC----CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 8888888766 4689999999999999998733321111 23477889999888 4688888 59999999998
Q ss_pred CCceEEEecCCCCCCCCCCCCCceeec---CCCeEEEEeCCeEEEEEEeeC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~ 256 (724)
-++++..-+.. .-+..+.|. .+.+|+++.-+-.+|.+...+
T Consensus 243 m~kPl~~~~v~-------GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 243 MGKPLFKAKVG-------GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ccCccccCccc-------cceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 45555431111 124444442 233455554445556655543
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=7e-06 Score=84.74 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=111.8
Q ss_pred eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-C-------ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEe
Q 004914 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-D-------EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAG 156 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~-------~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g 156 (724)
+..+.+|+..|..++--.+.+-+++++.|.+|++|.++. + ...++..|+ +|+++.|-.+ .+.++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----LRSIASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----cceeeec
Confidence 356788999888887666677799999999999999875 1 123567788 9999999888 4666655
Q ss_pred cCCCeEEEEecccCCccce-Eec----cCCCCeEEEEE-e-CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCC
Q 004914 157 GLAGHLYLNSKKWLGYRDQ-VLH----SGEGPVHVVKW-R-TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELL 228 (724)
Q Consensus 157 ~~dg~v~l~~~~~~~~~~~-~l~----~~~~~V~~l~~-~-~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~ 228 (724)
||.+.+|+. +.+.... ... +..+.|.++.- + +-+++++ -..+|+++|.+..+....+..-. .+.+...
T Consensus 803 --D~giHlWDP-Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-a~~Pna~ 878 (1034)
T KOG4190|consen 803 --DGGIHLWDP-FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-APGPNAL 878 (1034)
T ss_pred --cCcceeecc-cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc-CCCCchh
Confidence 678999987 3443322 111 12233444432 1 2345554 47899999999887666544332 2333334
Q ss_pred CCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 229 LPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 229 ~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+++. +.|+.+++| .+|+|-+.|.+++.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 455665 678899999 99999999998876
No 279
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0003 Score=78.35 Aligned_cols=268 Identities=13% Similarity=0.087 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCC--CCCCCHHHHHHHHHHHHcCCc
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTE--NPRLRDTAYEVALVALATNPS 505 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~--~~~l~~~~~~~~L~~~l~~~~ 505 (724)
.+++.....++.++.|.-| ++|..-+---.++-|+.|..+-+.+.++.|+..+..+ ..|..=.+++-+-..|-+-
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-- 1326 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-- 1326 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc--
Confidence 4666677777778877554 5454333223678889999998889888888888775 2233334555444445443
Q ss_pred cHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC-----chhhHHHHhc
Q 004914 506 FHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-----PYIFDFIENH 580 (724)
Q Consensus 506 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-----~~~~~~i~~~ 580 (724)
.+++..+-++.+ ..--++..++.++++.- +...|.+||.+-..|+-|.-.++.... ...-+.|.+-
T Consensus 1327 kp~km~EHl~LF-wsRvNipKviRA~eqah--------lW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kV 1397 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLF-WSRVNIPKVIRAAEQAH--------LWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKV 1397 (1666)
T ss_pred CHHHHHHHHHHH-HHhcchHHHHHHHHHHH--------HHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHH
Confidence 345555555432 13356778888887755 999999999999999999999888632 3344566676
Q ss_pred CChHHHHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCC-CChhhHHHHHHH
Q 004914 581 NLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPH-AGKDFHDMQVEL 659 (724)
Q Consensus 581 ~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~-~~~~~~~~lv~L 659 (724)
.-.+++++.+.-.++..|--..+||.--..+++...+|..|... ++-.+...||..+-..+.. ...++++++++
T Consensus 1398 aNvElyYkAi~FYl~~~P~llnDlL~vL~pRlDh~r~v~~f~K~----~~lpLikpyl~~vq~~Nn~avNealn~l~ie- 1472 (1666)
T KOG0985|consen 1398 ANVELYYKAIQFYLDFHPLLLNDLLTVLSPRLDHTRTVSIFSKA----GQLPLIKPYLRAVQSLNNKAVNEALNDLLIE- 1472 (1666)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHhcccccCchHHHHHHHhc----CCCcccHHHHHHHHhcchHHHHHHHHHHhhh-
Confidence 77788888888888888888888888766778889999999865 4455666899887654432 24455555554
Q ss_pred HHhcchhhhHHHhhhcCCCCHHHHHHHHhcCC---CchhHHHHHhccCChHHHHHHHH
Q 004914 660 YADYDLKMLLPFLRSSQHYTLEKAYEICVKRD---LLREQVFILGRMGNTKHALAVII 714 (724)
Q Consensus 660 y~~~~~~~ll~fL~~~~~y~~~~al~~c~~~~---~~~e~v~Ll~k~g~~~~Al~l~~ 714 (724)
+-+.+.|..=+...++||-=-.-+..++|. |.+=.+|||.+.++|++.+.|.-
T Consensus 1473 --eEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrriaAylyk~n~rW~qSiel~K 1528 (1666)
T KOG0985|consen 1473 --EEDYQGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIAAYLYKGNNRWKQSIELCK 1528 (1666)
T ss_pred --HHHHHHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHHHHHHhccchHHHHHHHhh
Confidence 334555555555555554323333344555 55677899999999988887753
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=3e-05 Score=76.07 Aligned_cols=151 Identities=12% Similarity=0.137 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-----ceEEEeCCC-Cee
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-----EKMKFDYHR-PMK 137 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-----~~~~~~~~~-~v~ 137 (724)
|-.+++|. +-.|-+-|..+...+.|. .++.|.++.|...++.+..|..+|.|...|++.+ .....-.|. .|+
T Consensus 225 gyhfs~G~-sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 225 GYHFSVGL-SQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT 302 (425)
T ss_pred eeeecccc-cceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh
Confidence 33444444 345777777655555665 5567888999999999999999999999999873 122333344 888
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCCCeEEEEEe-----CCEEEEEcCCcEEEEEcCCC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGPVHVVKWR-----TSLIAWANDAGVKVYDAAND 210 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~~V~~l~~~-----~~~la~~~d~~i~i~d~~~~ 210 (724)
++..-.. .++.+.+.+.+|+|.+|+.+.... .+..+.+|-..-.-+-++ |-+++++.|.-.|||.++.|
T Consensus 303 slq~Lq~----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 303 SLQILQF----SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhhcc----ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 8876652 267899999999999999885543 244445554333333333 45666668899999999999
Q ss_pred ceEEEecCCC
Q 004914 211 QRITFIERPR 220 (724)
Q Consensus 211 ~~~~~i~~~~ 220 (724)
..+.+++.+.
T Consensus 379 hLl~tipf~~ 388 (425)
T KOG2695|consen 379 HLLCTIPFPY 388 (425)
T ss_pred ceeeccCCCC
Confidence 9999887775
No 281
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.04 E-value=6.1e-05 Score=73.95 Aligned_cols=194 Identities=14% Similarity=0.173 Sum_probs=126.9
Q ss_pred EEEecC--CEEEEEeCCCeEEEEecCCC---e---------------------------------eEEE-cCCccceeEE
Q 004914 59 CVAVAE--RMIALGTHAGTVHILDFLGN---Q---------------------------------VKEF-PAHTAAVNDL 99 (724)
Q Consensus 59 ~~s~~~--~~la~g~~dg~I~i~d~~~~---~---------------------------------~~~~-~~h~~~V~~l 99 (724)
.|..++ ..+...+.|.+|++|....+ . .+.+ .+|+.-|++|
T Consensus 91 rw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 91 RWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI 170 (433)
T ss_pred eecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence 354443 46778889999999976210 0 0111 4588889999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEeccC-CceEE---EeCCC------CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 100 SFDVDGEYVGSCSDDGSVVINSLFT-DEKMK---FDYHR------PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 100 ~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~---~~~~~------~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
+++.|+..++|+. |=.|.+|++.- .+... ++.+. -|++..|+|. ..+.|+-.++.|+|++.+.+-
T Consensus 171 S~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~----~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 171 SVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH----HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh----HccEEEEecCCCcEEEeechh
Confidence 9999999888874 67899999875 22221 22222 6889999998 468899999999999998762
Q ss_pred CC---ccceEecc------------CCCCeEEEEEe--CCEEEEEcCCcEEEEEcC-CCceEEEecCCCCCC------C-
Q 004914 170 LG---YRDQVLHS------------GEGPVHVVKWR--TSLIAWANDAGVKVYDAA-NDQRITFIERPRGSP------R- 224 (724)
Q Consensus 170 ~~---~~~~~l~~------------~~~~V~~l~~~--~~~la~~~d~~i~i~d~~-~~~~~~~i~~~~~~~------~- 224 (724)
.. ...+.+.. --..|..+.|+ |+++.+-.=-+|++||+. ..+++.+++.+.... .
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 21 11111111 12456778888 788888777899999994 455666655443110 0
Q ss_pred --CCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 225 --PELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 225 --~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
...-...++| .++..+++| ..+.++++++..+.
T Consensus 326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 0001223567 456678888 88889999865543
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.0011 Score=71.50 Aligned_cols=170 Identities=9% Similarity=-0.020 Sum_probs=100.9
Q ss_pred EEEecCCE-EEEEeCC---CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEE-EeCC--CCEEEEeccCCceEEEe
Q 004914 59 CVAVAERM-IALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDD--GSVVINSLFTDEKMKFD 131 (724)
Q Consensus 59 ~~s~~~~~-la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~D--g~v~iwd~~~~~~~~~~ 131 (724)
+|+|+|+. ++..+.+ ..|+++|+.+.....+....+.+....|+|||+.++. .+.+ ..|.++|+.++....+.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT 273 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT 273 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc
Confidence 59999984 6654443 5688889865555555455566667889999987654 3334 45777788888776665
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC-------
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND------- 199 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d------- 199 (724)
... ......|+|+ |+.++..+ ..|...+|.....+.....+...... ...|+ |+.++.. ..
T Consensus 274 ~~~~~d~~p~~SPD-----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 274 NYPGIDVNGNFVED-----DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cCCCccCccEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCC
Confidence 444 3456689999 66555544 45555555554444333223221111 23677 6766655 22
Q ss_pred --CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 200 --AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 200 --~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
..|.+.|+.++.... +.... ......| ++|..++..
T Consensus 347 ~~~~I~v~d~~~g~~~~-LT~~~-------~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 347 NTFNLYLISTNSDYIRR-LTANG-------VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCcEEEEEECCCCCeEE-CCCCC-------CcCCeEECCCCCEEEEE
Confidence 247777887775432 22211 1223567 677766655
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.03 E-value=0.0085 Score=63.24 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=115.5
Q ss_pred EEEecCCEEEEEeC-CCeEEEEecC--CCeeE---EEc----------CCccceeEEEEcCCCCEEEEEeC-CCCEEEEe
Q 004914 59 CVAVAERMIALGTH-AGTVHILDFL--GNQVK---EFP----------AHTAAVNDLSFDVDGEYVGSCSD-DGSVVINS 121 (724)
Q Consensus 59 ~~s~~~~~la~g~~-dg~I~i~d~~--~~~~~---~~~----------~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd 121 (724)
++++++++++++.. +|.|.++++. |.... .+. .-.....++.|+|+|++++++.. ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 46678998888764 8999999994 33321 121 11234678999999998877643 44799999
Q ss_pred ccCCc--eE---EEeCC--CCeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCcc---ceEecc----C--CCCe
Q 004914 122 LFTDE--KM---KFDYH--RPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYR---DQVLHS----G--EGPV 184 (724)
Q Consensus 122 ~~~~~--~~---~~~~~--~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~---~~~l~~----~--~~~V 184 (724)
+.... +. .+... ...+.++|+|+ ++++ ++.-.++.|.+++..-.... ...+.. . ....
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd-----g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPD-----GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TT-----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCC-----cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 87643 32 23333 38899999999 5554 55667788888866511111 111111 1 1246
Q ss_pred EEEEEe--CCEEEEE--cCCcEEEEEcC--CCceE--EEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEE
Q 004914 185 HVVKWR--TSLIAWA--NDAGVKVYDAA--NDQRI--TFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASI 253 (724)
Q Consensus 185 ~~l~~~--~~~la~~--~d~~i~i~d~~--~~~~~--~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~ 253 (724)
..|.++ |+++.++ ..++|.+|++. ++... ..++.. ...+..+.+ +++++|+++ .++.|.+|++
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------GKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------SSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------CCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 778888 7888877 46789999994 34332 232221 123455666 678888777 7788999998
Q ss_pred ee
Q 004914 254 KT 255 (724)
Q Consensus 254 ~~ 255 (724)
..
T Consensus 322 d~ 323 (345)
T PF10282_consen 322 DP 323 (345)
T ss_dssp ET
T ss_pred eC
Confidence 64
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.0032 Score=63.01 Aligned_cols=190 Identities=12% Similarity=0.153 Sum_probs=120.2
Q ss_pred EEEecCCEEEEEeC-CCeEEEEec--CCCee--EEEcCCccc----------eeEEEEcCCCCEEEEEeC-CCCEEEEec
Q 004914 59 CVAVAERMIALGTH-AGTVHILDF--LGNQV--KEFPAHTAA----------VNDLSFDVDGEYVGSCSD-DGSVVINSL 122 (724)
Q Consensus 59 ~~s~~~~~la~g~~-dg~I~i~d~--~~~~~--~~~~~h~~~----------V~~l~~s~~g~~l~s~~~-Dg~v~iwd~ 122 (724)
+++.+|++++++.. .|.|.++-+ +|... .....|.++ +....++|++++|+++.- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 56778888887765 589999988 34331 122335555 888899999999988754 237899999
Q ss_pred cCCceEE-----EeCCCCeeEEEeCCCCCCCCCCEEEE-ecCCCeEEEEecccCCccceEecc---------CCCCeEEE
Q 004914 123 FTDEKMK-----FDYHRPMKAISLDPDYTRKMSRRFVA-GGLAGHLYLNSKKWLGYRDQVLHS---------GEGPVHVV 187 (724)
Q Consensus 123 ~~~~~~~-----~~~~~~v~~v~~~p~~~~~~~~~l~~-g~~dg~v~l~~~~~~~~~~~~l~~---------~~~~V~~l 187 (724)
..+.+.. +......+.++|+|+ ++...+ .-.+++|.+|...-...+...+.. .......|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn-----~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPN-----GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCC-----CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 8876542 222227899999999 666544 456889999876532222222221 22334445
Q ss_pred EEe--CCEEEEEc--CCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 188 KWR--TSLIAWAN--DAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 188 ~~~--~~~la~~~--d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
..+ |+++.+++ ...|.+|.+.. +..+..+... +....++....+ ++++.|+++ .++.|.+|.+...
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~---~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT---PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe---ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 554 89999984 45788888763 2333333222 112223445556 567777766 6677999988653
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.97 E-value=0.0012 Score=77.67 Aligned_cols=191 Identities=16% Similarity=0.232 Sum_probs=122.7
Q ss_pred CceEEEE--ecCCEEEEEeCCCeEEEE----ecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc-----
Q 004914 55 DAASCVA--VAERMIALGTHAGTVHIL----DFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF----- 123 (724)
Q Consensus 55 ~~i~~~s--~~~~~la~g~~dg~I~i~----d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~----- 123 (724)
+.+.++. ++...++++..+|.|.+. +.....+.....-...|.+++||||+..|+.++.+|++.+.+..
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 4566644 477789999999999999 55444444444456689999999999999999989988775421
Q ss_pred -----C---Cc--e---------EEEeC------------------------CC-CeeEEEeCCCCCCCCCCEEEEecC-
Q 004914 124 -----T---DE--K---------MKFDY------------------------HR-PMKAISLDPDYTRKMSRRFVAGGL- 158 (724)
Q Consensus 124 -----~---~~--~---------~~~~~------------------------~~-~v~~v~~~p~~~~~~~~~l~~g~~- 158 (724)
. |. . ..|.+ .. .-..++|-.| |.+||+.+.
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD-----G~yFAVss~~ 230 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD-----GEYFAVSSVE 230 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC-----CcEEEEEEEE
Confidence 0 10 0 00100 01 2345778888 899998874
Q ss_pred --C---CeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc---C-CcEEEEEcCCCceEEEecCCCCCCCCCC
Q 004914 159 --A---GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN---D-AGVKVYDAANDQRITFIERPRGSPRPEL 227 (724)
Q Consensus 159 --d---g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~---d-~~i~i~d~~~~~~~~~i~~~~~~~~~~~ 227 (724)
. ..+++|++. |....+-..-.|--.+++|. |++||++. + ..|.+|. ++|-....+..+. .....
T Consensus 231 ~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~--~~~~~ 305 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF--DPEEE 305 (928)
T ss_pred cCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC--CCCCc
Confidence 3 368888774 43322222233444567897 89999883 2 3455555 4555544444332 11223
Q ss_pred CCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 228 LLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 228 ~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
.+..+.| .++..|++...+.|.+|-...
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence 4678999 788899988767799997653
No 286
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.97 E-value=6.6e-05 Score=67.84 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHhhcCCCCcccccCcCC--CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhh
Q 004914 458 ASAWERWVFHFAHLRQLPVLVPYMPTE--NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQL 535 (724)
Q Consensus 458 ~~~we~~i~~F~~~~~l~~L~~~l~~~--~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 535 (724)
....+.+|..|.+.+....+.+||..- ....++.+++.++..|.+. +.++++++++. ....||++.++..|++..
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~--~~~~ll~~l~~-~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY--DPQKEIERLDN-KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH--CHHHHHHHHHh-ccccCCHHHHHHHHHHcC
Confidence 456789999999888888899988662 2246788999999888875 56778888883 146899999999998877
Q ss_pred ccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCch-hhHHHHhcCChH
Q 004914 536 NSSSMTDALKEALAELYVIDGHYEKAFSLYADL-MKPY-IFDFIENHNLHD 584 (724)
Q Consensus 536 ~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~-~~~~-~~~~i~~~~l~~ 584 (724)
+++.+..||.+.|+|++|++++++. .+.+ +.+++++.+..+
T Consensus 84 --------l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~ 126 (140)
T smart00299 84 --------LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPE 126 (140)
T ss_pred --------cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHH
Confidence 8999999999999999999999987 5655 999988866433
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.95 E-value=0.0016 Score=66.90 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=111.1
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC-CEEEEeccCCceEEEeCCC-CeeEEE
Q 004914 63 AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-SVVINSLFTDEKMKFDYHR-PMKAIS 140 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~-~v~~v~ 140 (724)
+|.+++..|. |...+.+..+.....+ +|.+.|.-..+..+++-++.|..|| .+-|+|..+++..++...- .|.++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 5778877765 7788888754443333 5777788888888888899999999 8999999999988887666 999999
Q ss_pred eCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCC----cEEEEEcCCCceE
Q 004914 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA----GVKVYDAANDQRI 213 (724)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~----~i~i~d~~~~~~~ 213 (724)
.+|+ |+.++++...+.+.+.+.. ++.....-++..+-|+...|+ ++++|.+ -+| .|++||+.+++..
T Consensus 409 vs~d-----GK~~vvaNdr~el~vidid-ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 409 VSPD-----GKKVVVANDRFELWVIDID-NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EcCC-----CcEEEEEcCceEEEEEEec-CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 9999 8989999887777666654 333333334456889999999 6899988 343 5999999988765
Q ss_pred EE
Q 004914 214 TF 215 (724)
Q Consensus 214 ~~ 215 (724)
..
T Consensus 483 ~v 484 (668)
T COG4946 483 DV 484 (668)
T ss_pred Ee
Confidence 43
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.93 E-value=0.00063 Score=64.80 Aligned_cols=188 Identities=11% Similarity=0.018 Sum_probs=114.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCee--EEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCceEE-EeCCC-CeeE
Q 004914 64 ERMIALGTHAGTVHILDFLGNQV--KEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKMK-FDYHR-PMKA 138 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~--~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~-~v~~ 138 (724)
-..||.|+..|...+|..+.+.. .....|...|+-+.=..+ ...+..++.|.++++.++..+.... ..... .+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34899999999999999965443 333445443332211111 2246678888888888887643321 11222 5889
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--EeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC-ce
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND-QR 212 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~-~~ 212 (724)
++++|+ ++++++.+....|..|...-.+.... ........-.+.+|+ ...+|++ .||++.|||++.. .+
T Consensus 164 ~~~snd-----~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSND-----PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCC-----CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999 89999999988999887754443322 223334445667787 4555665 7999999999853 33
Q ss_pred EEEecCCCCCCCCCCCCCceeec---CCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
...+... .+.|...+..+.|+ .-.+|... .-+.+.+.|+++...
T Consensus 239 m~~~sst--rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 239 MAEISST--RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hhhhccc--CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 3322211 11122223333342 23455555 667789999887553
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.92 E-value=4.2e-05 Score=89.67 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=120.8
Q ss_pred CCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCC--CCeeEEEeCCCCCCCC
Q 004914 73 AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYH--RPMKAISLDPDYTRKM 149 (724)
Q Consensus 73 dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~--~~v~~v~~~p~~~~~~ 149 (724)
++...-|...|..+ .++-+-..|.++.=+|...+.+||+.||.|++|-...+. +..+... ..|+.+.|+..
T Consensus 2189 ~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q----- 2262 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ----- 2262 (2439)
T ss_pred Cccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-----
Confidence 33333444433322 334455678888888999999999999999999987754 3344322 38899999888
Q ss_pred CCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE---c-CCcEEEEEcCCCceEEEecCCCCCCCC
Q 004914 150 SRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA---N-DAGVKVYDAANDQRITFIERPRGSPRP 225 (724)
Q Consensus 150 ~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~---~-d~~i~i~d~~~~~~~~~i~~~~~~~~~ 225 (724)
|+.+..+..||.+.+|... .........|....+...|-+.+++++ + ++.+.+||.-.......+. ..|
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H 2335 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCH 2335 (2439)
T ss_pred CCceeeeccCCceeecccC--CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-----eec
Confidence 8999999999999998764 333444455777777788878777765 2 5679999976433322222 223
Q ss_pred CCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 226 ELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 226 ~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.....++.+ +..++|++| .+|.|.+||++.++.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 334566777 677888888 999999999998763
No 290
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.87 E-value=0.0013 Score=69.63 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=96.7
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccCCceE-EEeC--
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDEKM-KFDY-- 132 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~~~-~~~~-- 132 (724)
.+++++|+++.+.+.||.|.++|+ +++.+.+++.... -.+++++++|++++++. ..+.+.++|..+.+.. .+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 457889999999999999999999 6666777766554 46799999999887664 6899999999886543 3322
Q ss_pred -----CC-CeeEEEeCCCCCCCCCCEEEEe-cCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCc
Q 004914 133 -----HR-PMKAISLDPDYTRKMSRRFVAG-GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAG 201 (724)
Q Consensus 133 -----~~-~v~~v~~~p~~~~~~~~~l~~g-~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~ 201 (724)
.. .+.++..+|. ...++.. -..|.+.+.+..-...................|+ ++++.++ .++.
T Consensus 121 ~~~~~~~~Rv~aIv~s~~-----~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPG-----RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp E-TTTS---EEEEEE-SS-----SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred ccccccCCCceeEEecCC-----CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 12 5678877887 5655555 4457776554321111111111223345667787 5665444 4778
Q ss_pred EEEEEcCCCceEEEecC
Q 004914 202 VKVYDAANDQRITFIER 218 (724)
Q Consensus 202 i~i~d~~~~~~~~~i~~ 218 (724)
+-++|..+++.+..+..
T Consensus 196 i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEEEETTTTEEEEEEE-
T ss_pred eEEEeeccceEEEEeec
Confidence 99999999988876654
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.86 E-value=0.00024 Score=77.00 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=83.7
Q ss_pred EEEEecCCEEEEEe-CCCeEEEE--ecC--CCeeEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccCCceEE
Q 004914 58 SCVAVAERMIALGT-HAGTVHIL--DFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMK 129 (724)
Q Consensus 58 ~~~s~~~~~la~g~-~dg~I~i~--d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~ 129 (724)
.+|+|+|+.|+..+ .+|...+| +.. +.....+..+...+....|+|+|+.|+.++.+ ..|.+||+.+++...
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 47999999888766 45654554 443 33344555555677889999999998876553 368999999988776
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEE-ecCCCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVA-GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~-g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
+.... .+.+..|+|+ |+.++. +...|.-.+|..+..+.....+....+.+...+|+
T Consensus 366 Lt~~~~~~~~p~wSpD-----G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 366 LTTSPENKESPSWAID-----SLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred ccCCCCCccceEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceec
Confidence 65444 6788999999 776664 44444433443333344444444455556666665
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.00011 Score=72.37 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=87.4
Q ss_pred EEecCCEEEEEeCCCeEEEEecC------CCeeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCc----eE
Q 004914 60 VAVAERMIALGTHAGTVHILDFL------GNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDE----KM 128 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~------~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~----~~ 128 (724)
|+..++.+..|+.+|.|..+|+. +...+.+ -|..+|+++..-. ++.+|++.+.+|+|++||++..+ +.
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 44457889999999999999982 2223333 4888999998766 78899999999999999998633 45
Q ss_pred EEeCCC---CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC----CCCeEEEEEe
Q 004914 129 KFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG----EGPVHVVKWR 190 (724)
Q Consensus 129 ~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~----~~~V~~l~~~ 190 (724)
.+.+|. .-.-+-+++. ...+++++.|-..++|... .+....+++.. +.-+.+++|.
T Consensus 339 qYeGHvN~~a~l~~~v~~e-----eg~I~s~GdDcytRiWsl~-~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEE-----EGSIFSVGDDCYTRIWSLD-SGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeecccccccccccccccc-----cceEEEccCeeEEEEEecc-cCceeeccCCCCccccccccceehh
Confidence 666665 2222334555 5788889999999999886 56555554432 2234555555
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.80 E-value=5.2e-05 Score=81.32 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=109.3
Q ss_pred EEEecC--CEEEEEeCCCeEEEEec---CCCee-EEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCc--eEE
Q 004914 59 CVAVAE--RMIALGTHAGTVHILDF---LGNQV-KEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE--KMK 129 (724)
Q Consensus 59 ~~s~~~--~~la~g~~dg~I~i~d~---~~~~~-~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~--~~~ 129 (724)
-|+++. .+-++.++...-.+|++ +.+.+ -.+.+|+..|+++-|+|... .+++++.|-.|..||+++.. +..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 466654 35556667777788988 22223 45678999999999998754 78999999999999999843 333
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe----CCEEEEEcCCcEEE
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWANDAGVKV 204 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~----~~~la~~~d~~i~i 204 (724)
+...+ .-..|+|+-. ...+.+.+....+.+|+.+..+.....+++|-..|.++.|+ +.++..++|++|+.
T Consensus 154 ~~~w~s~asqVkwnyk-----~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYK-----DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred eecccccCceeeeccc-----CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 33333 7778888765 34455556667899999987777788888888889999988 56677779999999
Q ss_pred EEcCC
Q 004914 205 YDAAN 209 (724)
Q Consensus 205 ~d~~~ 209 (724)
||...
T Consensus 229 w~y~k 233 (1081)
T KOG0309|consen 229 WDYSK 233 (1081)
T ss_pred ecccc
Confidence 99763
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0018 Score=68.06 Aligned_cols=178 Identities=18% Similarity=0.310 Sum_probs=114.7
Q ss_pred EEEecC--CEEEE-----EeCCCeEEEEecC--CCe----eEEEcCCccceeEEEEcCCCCEE---EEEeCCC-------
Q 004914 59 CVAVAE--RMIAL-----GTHAGTVHILDFL--GNQ----VKEFPAHTAAVNDLSFDVDGEYV---GSCSDDG------- 115 (724)
Q Consensus 59 ~~s~~~--~~la~-----g~~dg~I~i~d~~--~~~----~~~~~~h~~~V~~l~~s~~g~~l---~s~~~Dg------- 115 (724)
.+||.+ ..+|+ ++.-+.++||... +.. .++|. ..+.| .+.|++-|+-| ++...|.
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccc
Confidence 355553 35554 3445688998874 211 12221 12233 47899888742 2333343
Q ss_pred --CEEEEeccCCceEEEeC--CCCeeEEEeCCCCCCCCCCEEEE--ecCCCeEEEEecccCCccceEeccCCCCeEEEEE
Q 004914 116 --SVVINSLFTDEKMKFDY--HRPMKAISLDPDYTRKMSRRFVA--GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKW 189 (724)
Q Consensus 116 --~v~iwd~~~~~~~~~~~--~~~v~~v~~~p~~~~~~~~~l~~--g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~ 189 (724)
++++.++. |....+.. ..||+++.|+|+ ++.|++ |..-..+.+++.+ ...++.-.+|+=.++-|
T Consensus 250 Eq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s-----~~EF~VvyGfMPAkvtifnlr----~~~v~df~egpRN~~~f 319 (566)
T KOG2315|consen 250 EQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPS-----GREFAVVYGFMPAKVTIFNLR----GKPVFDFPEGPRNTAFF 319 (566)
T ss_pred cceEEEEEec-CceEEEecCCCCCceEEEECCC-----CCEEEEEEecccceEEEEcCC----CCEeEeCCCCCccceEE
Confidence 46677776 44444433 349999999999 766655 5666678887653 23344446778888999
Q ss_pred e--CCEEEEE---c-CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--e-----CCeEEEEEEee
Q 004914 190 R--TSLIAWA---N-DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--W-----GTYIKIASIKT 255 (724)
Q Consensus 190 ~--~~~la~~---~-d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~-----d~~i~vw~~~~ 255 (724)
+ |++|+.+ + -|.+-+||+.+.+.+..+.... ..-..| ++|..++++ . |+.++||+...
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--------tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9 7777655 2 5789999999988887765543 335678 788888887 2 67899999865
Q ss_pred C
Q 004914 256 N 256 (724)
Q Consensus 256 ~ 256 (724)
.
T Consensus 392 ~ 392 (566)
T KOG2315|consen 392 S 392 (566)
T ss_pred c
Confidence 3
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.79 E-value=0.0019 Score=77.71 Aligned_cols=148 Identities=12% Similarity=0.058 Sum_probs=98.8
Q ss_pred EEEEe-cCCEEEEEeCCCeEEEEecCCCeeEEEcCC---------------ccceeEEEEcCCCC-EEEEEeCCCCEEEE
Q 004914 58 SCVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAH---------------TAAVNDLSFDVDGE-YVGSCSDDGSVVIN 120 (724)
Q Consensus 58 ~~~s~-~~~~la~g~~dg~I~i~d~~~~~~~~~~~h---------------~~~V~~l~~s~~g~-~l~s~~~Dg~v~iw 120 (724)
.++++ ++..+++.+.++.|++||..+..+..+.+. -...++|+++|+|+ .+++-+.++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46777 456667777889999999855544333221 12346799999998 45566678999999
Q ss_pred eccCCceEEEeC-----------------------CCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe
Q 004914 121 SLFTDEKMKFDY-----------------------HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL 177 (724)
Q Consensus 121 d~~~~~~~~~~~-----------------------~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l 177 (724)
|+.++....+.+ .....+++++++ |..+++.+.++.|++|+.. +.....+
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-----G~LYVADs~N~rIrviD~~--tg~v~ti 840 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-----GQIYVADSYNHKIKKLDPA--TKRVTTL 840 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-----CcEEEEECCCCEEEEEECC--CCeEEEE
Confidence 998755322110 012468889998 7888888889999999864 2222222
Q ss_pred cc--------------CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 178 HS--------------GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 178 ~~--------------~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
.+ .-....+++++ |+++++. .++.|++||+.+++.
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11 11245678887 6765555 688999999998765
No 296
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.77 E-value=0.04 Score=58.14 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=116.5
Q ss_pred EEEEecCCEEEEEeC----CCeEEEEecC---CCe--eEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC-Cc
Q 004914 58 SCVAVAERMIALGTH----AGTVHILDFL---GNQ--VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DE 126 (724)
Q Consensus 58 ~~~s~~~~~la~g~~----dg~I~i~d~~---~~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~ 126 (724)
.++++++++|.+... +|.|..|.+. +.. +.........-..++++|++++++++. .+|.|.++++.. +.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 467888888877765 5799999883 322 233332333456789999999988876 589999999987 44
Q ss_pred eEE----Ee----------CCC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccc---eEec-cCCCCeEE
Q 004914 127 KMK----FD----------YHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRD---QVLH-SGEGPVHV 186 (724)
Q Consensus 127 ~~~----~~----------~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~---~~l~-~~~~~V~~ 186 (724)
+.. +. ... ..+++.++|+ ++++++... ...|.+|+..-..... ..+. .....-..
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-----g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-----GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-----SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCC-----CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 322 11 112 6789999999 777666543 3467777654222112 1121 12234578
Q ss_pred EEEe--CCEEEEE--cCCcEEEEEcC--CCce--EEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 187 VKWR--TSLIAWA--NDAGVKVYDAA--NDQR--ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 187 l~~~--~~~la~~--~d~~i~i~d~~--~~~~--~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
+.|+ ++++.+. .++.|.+|++. ++.. +..+...............+.. ++++.|.++ ..+.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 8898 5666555 47889999988 4432 2233222111111223445555 688888777 677899999954
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.77 E-value=0.00037 Score=70.18 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=101.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce----E-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCe---EEEEe
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK----M-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGH---LYLNS 166 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~----~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~---v~l~~ 166 (724)
.+..+..++++++++.+..+....++++..... . .....+..+++.+..+ ......+...|. +.+|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-----~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-----DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-----cceEEEEeecCCceeeeeec
Confidence 344556788899999888888877887766331 1 2223334444555444 344444444444 44443
Q ss_pred cccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE
Q 004914 167 KKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG 243 (724)
Q Consensus 167 ~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g 243 (724)
.. ..+...+-+|-.-++.++|+ +++|.++ .|..|++-....--.+..+ ..+|..++..++..+++.|++|
T Consensus 139 ~~--~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----clGH~eFVS~isl~~~~~LlS~ 211 (390)
T KOG3914|consen 139 AD--SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-----CLGHKEFVSTISLTDNYLLLSG 211 (390)
T ss_pred cc--ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-----ccccHhheeeeeeccCceeeec
Confidence 32 13344456788889999999 6888888 6999998776544443332 4556778888888788888888
Q ss_pred -eCCeEEEEEEeeCCCC
Q 004914 244 -WGTYIKIASIKTNQSN 259 (724)
Q Consensus 244 -~d~~i~vw~~~~~~~~ 259 (724)
.|+++++||+.++...
T Consensus 212 sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLL 228 (390)
T ss_pred CCCCcEEEEecccCCcc
Confidence 9999999999987643
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.0053 Score=66.27 Aligned_cols=155 Identities=8% Similarity=-0.028 Sum_probs=94.2
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCE-EEEEeC---CCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEY-VGSCSD---DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRK 148 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~---Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~ 148 (724)
..|.+-|.+|...+.+.... .+....|+|+|+. ++..+. +..|.++|+.+++...+.... ......|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPD---- 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKD---- 243 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCC----
Confidence 46777777777655554443 7788999999985 554443 346888899888877665444 6677889999
Q ss_pred CCCEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCC----cEEEEEcCCCceEEEecCCCC
Q 004914 149 MSRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDA----GVKVYDAANDQRITFIERPRG 221 (724)
Q Consensus 149 ~~~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~----~i~i~d~~~~~~~~~i~~~~~ 221 (724)
|+.++ +.+.+|.-.+|.....+.....+..+.+......|+ |+.|+..++. .|.++|+.+++........
T Consensus 244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-- 320 (419)
T PRK04043 244 -GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-- 320 (419)
T ss_pred -CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--
Confidence 65554 455455544443332344444454444434455788 6666655332 5888888877654322111
Q ss_pred CCCCCCCCCceee-cCCCeEEEE
Q 004914 222 SPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 222 ~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
. . ...| ++++.++..
T Consensus 321 ~-----~--~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 321 K-----N--NSSVSTYKNYIVYS 336 (419)
T ss_pred C-----c--CceECCCCCEEEEE
Confidence 1 1 1367 577766655
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.76 E-value=0.0012 Score=67.80 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=89.7
Q ss_pred EEecCCEEEEEeCCC-eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC--Ce
Q 004914 60 VAVAERMIALGTHAG-TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR--PM 136 (724)
Q Consensus 60 ~s~~~~~la~g~~dg-~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~--~v 136 (724)
+..+++-++.|+.|| .+-|+|..+..++.+...-+.|.++..+++|++++.+...+.+.+.|+.++.+..+...+ -|
T Consensus 367 ~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lI 446 (668)
T COG4946 367 IQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLI 446 (668)
T ss_pred EccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccccee
Confidence 445667889999999 899999998888888888899999999999999999999999999999999988876666 89
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCe----EEEEec
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGH----LYLNSK 167 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~----v~l~~~ 167 (724)
+.++|||+ ++++|-+.-+|. |++++.
T Consensus 447 tdf~~~~n-----sr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 447 TDFDWHPN-----SRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred EEEEEcCC-----ceeEEEecCcceeeeeEEEEec
Confidence 99999999 899998877764 566655
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.76 E-value=0.00035 Score=67.74 Aligned_cols=207 Identities=12% Similarity=0.152 Sum_probs=124.7
Q ss_pred CCCccccCCCceEEEEe--cCCEEEEEeCCCeEEEEecCC------CeeEEEcCCc------------cceeEEEEcCCC
Q 004914 46 GSLPSLLANDAASCVAV--AERMIALGTHAGTVHILDFLG------NQVKEFPAHT------------AAVNDLSFDVDG 105 (724)
Q Consensus 46 ~~~~~~~~~~~i~~~s~--~~~~la~g~~dg~I~i~d~~~------~~~~~~~~h~------------~~V~~l~~s~~g 105 (724)
..+......+.|+++-. .|.++++|...|.|.+|.... +....|++|. ..|..+.|..++
T Consensus 18 ~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 18 LDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred hhcccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 34445555667887555 578999999999999997621 1134456664 357788886544
Q ss_pred C--EEEEEeCCCCEEEEeccCCc-------------------------------------e-----EE--EeCCC-CeeE
Q 004914 106 E--YVGSCSDDGSVVINSLFTDE-------------------------------------K-----MK--FDYHR-PMKA 138 (724)
Q Consensus 106 ~--~l~s~~~Dg~v~iwd~~~~~-------------------------------------~-----~~--~~~~~-~v~~ 138 (724)
. +++..+.|.+|++|-+..+. + .+ .+.|. -+++
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 3 57777789999999864320 0 00 13455 6778
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe--ccCC-----CCeEEEEEeC---C-EEEEEcCCcEEEEEc
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL--HSGE-----GPVHVVKWRT---S-LIAWANDAGVKVYDA 207 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l--~~~~-----~~V~~l~~~~---~-~la~~~d~~i~i~d~ 207 (724)
+.|..+ ...++ .+.|=.|.+|..........++ +.+. .-|++..|++ . +..+++.|.|++-|+
T Consensus 178 iS~NsD-----~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 178 ISFNSD-----KETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eeecCc-----hheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 888887 34444 4456688898765333333222 2332 3477788883 3 444557899999999
Q ss_pred CCCceEE----EecCCCC------CCCCCCCCCceeec-CCCeEEEEeCCeEEEEEEeeCCC
Q 004914 208 ANDQRIT----FIERPRG------SPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 208 ~~~~~~~----~i~~~~~------~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
+...... .+...-. .......+..+.|+ +|+++++-.-.+|++||++....
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~ 313 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN 313 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence 8432111 1111100 11112235556674 55566655778999999986543
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=97.73 E-value=8e-06 Score=74.19 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHhhcCCCCcccccCcCC---CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhh
Q 004914 458 ASAWERWVFHFAHLRQLPVLVPYMPTE---NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQ 534 (724)
Q Consensus 458 ~~~we~~i~~F~~~~~l~~L~~~l~~~---~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 534 (724)
...-+.+|..|.+.+.+..|..||... .+..++.+++.++..|++.. ..+++++++++.. .||++.+...+++.
T Consensus 7 ~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~--~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 7 PLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSN--NYDLDKALRLCEKH 83 (143)
T ss_dssp TSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSS--SS-CTHHHHHHHTT
T ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHccccc--ccCHHHHHHHHHhc
Confidence 445678899999999999999999773 35677899999999998862 2378999999754 39999999999886
Q ss_pred hccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCc-hhhHHHHhcCChHHHHHHHHHHHc
Q 004914 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKP-YIFDFIENHNLHDAIREKVVQLML 595 (724)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~-~~~~~i~~~~l~~~~~~~~~~L~~ 595 (724)
- +++.+++||.+.|+|++|+.++.++.+. .+.+++.+.+..+....-+..+++
T Consensus 84 ~--------l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 84 G--------LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp T--------SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred c--------hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 6 8999999999999999999986666664 488999988865555544444443
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.61 E-value=0.0096 Score=59.64 Aligned_cols=173 Identities=21% Similarity=0.253 Sum_probs=110.4
Q ss_pred EEEecCCEEEEE-----eCCCeEEEEecC--CCeeEEEcCCccceeEEEEcCCCCEEEEEe------------------C
Q 004914 59 CVAVAERMIALG-----THAGTVHILDFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCS------------------D 113 (724)
Q Consensus 59 ~~s~~~~~la~g-----~~dg~I~i~d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~------------------~ 113 (724)
+||++|++|.+. +..|.|-|||.. -..+.++..|.-.-..+.+.|||+.|+.+. +
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 699999988776 446899999996 344677777766667788999997776653 1
Q ss_pred CCCEEEEeccCCceEE---E--eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe-------EEEEecccCCccceEec--
Q 004914 114 DGSVVINSLFTDEKMK---F--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-------LYLNSKKWLGYRDQVLH-- 178 (724)
Q Consensus 114 Dg~v~iwd~~~~~~~~---~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-------v~l~~~~~~~~~~~~l~-- 178 (724)
+..+..-|..+|++.. + ..++ .|..++++++ |..++..-..|. +-++.. +.....+.
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-----G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p 208 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-----GTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAP 208 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCC-----CcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCC
Confidence 2234555666666542 3 3355 8999999988 544444333332 222222 12122222
Q ss_pred -----cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCe
Q 004914 179 -----SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTY 247 (724)
Q Consensus 179 -----~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~ 247 (724)
.-.+.|-+|+++ +.+++++ ..+.+.+||..++..+.....+. .|.++...+.+++++..|.
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--------~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--------ACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--------eeeeeecCCceEEeCCCcc
Confidence 234778899998 5666655 47789999999999988765554 4556554444555554443
No 303
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.2 Score=57.51 Aligned_cols=328 Identities=13% Similarity=0.076 Sum_probs=179.1
Q ss_pred CCCCEEEEECCCcEEEEe-eCCchhhHHHHHhcccHHHHHHHHHhc-C---CCch----hHhHHHHHHHHHHhccchHHH
Q 004914 375 GDEPLYYIVSPKDVVIAK-PRDAEDHIAWLLEHGWHEKALAAVEAG-Q---GRSE----LLDEVGSRYLDHLIVERKYAE 445 (724)
Q Consensus 375 ~~~~~~~v~s~~~i~~~~-~~~~~d~i~~ll~~~~~~~Al~~~~~~-~---~~~~----~~~~i~~~~~~~l~~~~~~~~ 445 (724)
+..+.+|+++.+.++... ...|+.+....+.......++++.... . .+.. ....+..+.-+.+..- ..
T Consensus 409 ~~~g~llvl~e~~~~llq~y~~w~ern~f~~~~~~~~dv~ql~~~~y~~~lk~~~k~~~a~ea~~~~t~~~l~~v---~~ 485 (1206)
T KOG2079|consen 409 GLKGHLLVLTEDGLVLLQPYCPWDERNNFSVAGLSGNDVIQLHTYFYTNSLKRLRKAYHASEAVSGLTVYYLGVV---HR 485 (1206)
T ss_pred ccccceeeeehhhHHHhccccchhhhhhhhhcccchhHHHHHHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH---HH
Confidence 345589999998887775 777887877777777777777775431 0 0000 0011111111111110 01
Q ss_pred HHhhhhh-----hh--ccChhhHHHHHHHHhhcCC---CCcccccCcCC-CCCCCHHHHHHHHHHHHcCCccHHHHHHHh
Q 004914 446 AASLCPK-----LL--RGSASAWERWVFHFAHLRQ---LPVLVPYMPTE-NPRLRDTAYEVALVALATNPSFHKYLLSTV 514 (724)
Q Consensus 446 Aa~~~~~-----~~--~~~~~~we~~i~~F~~~~~---l~~L~~~l~~~-~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i 514 (724)
|.+.+.+ ++ +.....|+.-..+|..... ++.+..++..+ -...++.+...++.+|++. ....+.++|
T Consensus 486 vls~~l~~vi~~~it~~sLdll~~~~we~l~~~s~~vfle~l~e~V~~~tvtsisPvl~~sL~dy~~e~--~l~~ie~lI 563 (1206)
T KOG2079|consen 486 VLSRLLPTVISKLITERSLDLLREQDWEGLFNMSMSVFLEHLHEVVLLKTVTSISPVLAPSLADYLLEE--ELKYIENLI 563 (1206)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHhHHHhhcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHhc--CHHHHHhhe
Confidence 1111111 11 1223456655554433221 34444454443 2346788888888888875 477899999
Q ss_pred hcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHH-HhcCCHHHHHHHHHHc-C---------Cc-h-hhHHH----
Q 004914 515 KSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELY-VIDGHYEKAFSLYADL-M---------KP-Y-IFDFI---- 577 (724)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly-~~~~~~~~al~~~~~~-~---------~~-~-~~~~i---- 577 (724)
-..++...|.+.+.+.+++.. +++.++++. ....+|..+|.-++-. + .. . +|.|+
T Consensus 564 v~le~~sLDld~vlki~kq~~--------lfd~liYv~~kafNDY~tplvell~~~~~difs~sEq~~gn~~f~yvs~cL 635 (1206)
T KOG2079|consen 564 VTLEPSSLDLDVVLKICKQYN--------LFDGLIYVNNKAFNDYDTPLVELLSRISNDIFSPSEQRLGNTIFVYVSYCL 635 (1206)
T ss_pred eecCcccccHHHHHHHHHHhC--------CcceEEEEeeehhcccccHHHHHHHHhhccccCCccccCCceEEEeeehhh
Confidence 999999999999999998765 333333321 2334455554444431 0 00 0 11111
Q ss_pred ------------HhcC--------------------ChHHHHHHHHHHHccChhHHHHHhhhcC---------CCCChHH
Q 004914 578 ------------ENHN--------------------LHDAIREKVVQLMLLDCKRAVSLLIQNK---------DLITPSE 616 (724)
Q Consensus 578 ------------~~~~--------------------l~~~~~~~~~~L~~~~~~~~~~ll~~~~---------~~~~~~~ 616 (724)
++.+ --+.-+.|...|++.||.++.+.+-.-. +......
T Consensus 636 TG~~YP~~~~~ie~~~~V~~el~r~cfS~v~~k~~~e~e~~fPYlrllLk~d~~~flnvls~afd~~~Fsldn~lv~rq~ 715 (1206)
T KOG2079|consen 636 TGRFYPFGLHPIEEQGSVSHELLRNCFSSVTTKGNPEEEPAFPYLRLLLKSDPSRFLNVLSEAFDASLFSLDNELVSRQY 715 (1206)
T ss_pred cccccccccCchHhhchhhHHHHHHHhhcCCcCCCCccCcccHHHHHHHhhCHHHHHHHHHHHhhhhhhccchhhhhHHH
Confidence 1111 1122456788899999999988876521 2245667
Q ss_pred HHHHHhcccccCCc-hhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhc---chh----hhHHHhhhcCCCCHHHHH
Q 004914 617 VVTQLLNARDKCDS-RYFLHLYLHALFEVNPHA----GKDFHDMQVELYADY---DLK----MLLPFLRSSQHYTLEKAY 684 (724)
Q Consensus 617 vi~~l~~~~~~~~~-~~~l~~yL~~l~~~~~~~----~~~~~~~lv~Ly~~~---~~~----~ll~fL~~~~~y~~~~al 684 (724)
+|.+|...=+.... ....+.|.-..+.+..+. ...+....+-|.... .++ .|+..|---...+.++-|
T Consensus 716 iI~~L~~~mk~e~s~~~~~lifiaq~~s~yrqli~~s~shlq~~vitlcss~~hs~rEn~~~alesll~lyh~~~de~~i 795 (1206)
T KOG2079|consen 716 IIDLLLDAMKDEGSIRVLVLIFIAQSISKYRQLIKVSNSHLQCVVITLCSSRVHSIRENSQIALESLLPLYHSRTDENFI 795 (1206)
T ss_pred HHHHHHHHhcccccchhhhHHHHHHHhhhhhHHhhhhHHHHHHHHHhhccCcccchhHHHHHHHHhhccceeccChHHHH
Confidence 77766532111111 122222333333222211 111222222222111 122 333333333455778889
Q ss_pred HHHhcCCCchhHHHHHhccCChHHHHHHHHH
Q 004914 685 EICVKRDLLREQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 685 ~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
+.|++++++.-.-|||.|.|+|+.|+..||+
T Consensus 796 l~a~~~~~y~Vl~hi~~k~~kyed~l~~iLe 826 (1206)
T KOG2079|consen 796 LEAKEKNFYKVLFHIYKKENKYEDALSLILE 826 (1206)
T ss_pred HHhhhcccceeHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999998
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.013 Score=63.07 Aligned_cols=380 Identities=13% Similarity=0.151 Sum_probs=170.7
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEE-eccCCceEEEeCCCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN-SLFTDEKMKFDYHRP 135 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw-d~~~~~~~~~~~~~~ 135 (724)
..+.+|+|+++++ +.+|.-.|+...+..-+.+ +.-.+..|.+.+ .+|+-..+++|.|+ ++.......+.....
T Consensus 37 ~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~ 110 (443)
T PF04053_consen 37 SLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPFS 110 (443)
T ss_dssp EEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----SS-
T ss_pred eEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCCcc
Confidence 3478899999988 6667777777533322222 233556788844 57777778899995 554433223322223
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCc--
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQ-- 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~-- 211 (724)
+..+-- |..+...+.+ .|.+|+.. .+.....+.. .+|..+.|+ |.+++..++.++.+++.....
T Consensus 111 ~~~If~--------G~LL~~~~~~-~i~~yDw~-~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~ 178 (443)
T PF04053_consen 111 VEKIFG--------GNLLGVKSSD-FICFYDWE-TGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVA 178 (443)
T ss_dssp EEEEE---------SSSEEEEETT-EEEEE-TT-T--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHH
T ss_pred cceEEc--------CcEEEEECCC-CEEEEEhh-HcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcc
Confidence 333321 3556555544 78887653 2344444432 248999999 789998888899998865430
Q ss_pred ---------eEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeec
Q 004914 212 ---------RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTS 282 (724)
Q Consensus 212 ---------~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (724)
....+... ...+.+.+|.++ .++-...+.++. +..+.
T Consensus 179 ~~~~~g~e~~f~~~~E~------~~~IkSg~W~~d-~fiYtT~~~lkY--l~~Ge------------------------- 224 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEI------SERIKSGCWVED-CFIYTTSNHLKY--LVNGE------------------------- 224 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TTEEEE--EETTE-------------------------
T ss_pred cccccCchhceEEEEEe------cceeEEEEEEcC-EEEEEcCCeEEE--EEcCC-------------------------
Confidence 11111100 012445566443 333332224444 21111
Q ss_pred eEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCCc--ccccc-ccCccccc
Q 004914 283 YYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLG--FEHYK-AKDYSLAH 359 (724)
Q Consensus 283 ~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~ 359 (724)
..-|..++..+.+++|.+. ...+.++|..+... +-.+++.. |+... -.||.-+
T Consensus 225 --~~~i~~ld~~~yllgy~~~--------------------~~~ly~~Dr~~~v~-~~~ld~~~~~fk~av~~~d~~~v- 280 (443)
T PF04053_consen 225 --TGIIAHLDKPLYLLGYLPK--------------------ENRLYLIDRDGNVI-SYELDLSELEFKTAVLRGDFEEV- 280 (443)
T ss_dssp --EEEEEE-SS--EEEEEETT--------------------TTEEEEE-TT--EE-EEE--HHHHHHHHHHHTT-HHH--
T ss_pred --cceEEEcCCceEEEEEEcc--------------------CCEEEEEECCCCEE-EEEECHHHHHHHHHHHcCChhhh-
Confidence 1124445667777787642 24666666554221 22222211 11110 0111110
Q ss_pred ccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchhhH-HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHh
Q 004914 360 APFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHI-AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLI 438 (724)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i-~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~ 438 (724)
.-.+....++-..|.+...++ ..|-++|..+.||++++... .+-++ -+
T Consensus 281 --------------------~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----~rFeL-------Al 329 (443)
T PF04053_consen 281 --------------------LRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD----HRFEL-------AL 329 (443)
T ss_dssp ------------------------HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----HHHHH-------HH
T ss_pred --------------------hhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----HHhHH-------HH
Confidence 001111222222334445555 77778999999999965322 22223 23
Q ss_pred ccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCC
Q 004914 439 VERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWP 518 (724)
Q Consensus 439 ~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~ 518 (724)
+-|+.+.|.+...++- +..-|.+.-...+..+.++.-...+... ..++.++..|+... +.+++.++.+.
T Consensus 330 ~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~------~d~~~L~lLy~~~g-~~~~L~kl~~~-- 398 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA------KDFSGLLLLYSSTG-DREKLSKLAKI-- 398 (443)
T ss_dssp HCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC------T-HHHHHHHHHHCT--HHHHHHHHHH--
T ss_pred hcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh------cCccccHHHHHHhC-CHHHHHHHHHH--
Confidence 4567777776433222 3567888888888877654433322221 13444444443221 44444443321
Q ss_pred CCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC-chhh
Q 004914 519 PVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-PYIF 574 (724)
Q Consensus 519 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-~~~~ 574 (724)
.+.+. -....-.-+...|+.++.++++++-.. ++|.
T Consensus 399 ------------a~~~~--------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 399 ------------AEERG--------DINIAFQAALLLGDVEECVDLLIETGRLPEAA 435 (443)
T ss_dssp ------------HHHTT---------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHH
T ss_pred ------------HHHcc--------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHHH
Confidence 11111 111222224456888999998888766 4443
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.60 E-value=0.014 Score=67.14 Aligned_cols=189 Identities=15% Similarity=0.230 Sum_probs=118.0
Q ss_pred CceEEEEe--cCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc----C----
Q 004914 55 DAASCVAV--AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF----T---- 124 (724)
Q Consensus 55 ~~i~~~s~--~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~----~---- 124 (724)
+.|.++.. +++-+++++..|.|.+-|...........-...|.+++|+||+..++-.+.++++.+-+-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 34666554 7889999999999999988655544444456689999999999999988888887764321 0
Q ss_pred -------CceE---------EEeC----------------------CCCeeEEEeCCCCCCCCCCEEEE-----ecCCCe
Q 004914 125 -------DEKM---------KFDY----------------------HRPMKAISLDPDYTRKMSRRFVA-----GGLAGH 161 (724)
Q Consensus 125 -------~~~~---------~~~~----------------------~~~v~~v~~~p~~~~~~~~~l~~-----g~~dg~ 161 (724)
++.. .+.+ +..=++|.|-.+ |.+|++ ......
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-----g~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-----GEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-----CcEEEEEEEeccCCcee
Confidence 0000 1110 001134888888 888888 333368
Q ss_pred EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE----cCCcEEEEEcCCCceEE--EecCCCCCCCCCCCCCcee
Q 004914 162 LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA----NDAGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLV 233 (724)
Q Consensus 162 v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~----~d~~i~i~d~~~~~~~~--~i~~~~~~~~~~~~~~~l~ 233 (724)
+++|+.. |....+-....+.=.+++|. |.++++- +|+.|.+|.-. |-... .++.|... ..+..++
T Consensus 224 irV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de----~~ve~L~ 296 (1265)
T KOG1920|consen 224 IRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDE----KEVEELA 296 (1265)
T ss_pred EEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccc----cchheee
Confidence 9999875 32222112223344578888 6777764 46668888743 33332 22222211 1267899
Q ss_pred e-cCCCeEEE---E-eCCeEEEEEEee
Q 004914 234 W-QDDTLLVI---G-WGTYIKIASIKT 255 (724)
Q Consensus 234 ~-~~~~~l~~---g-~d~~i~vw~~~~ 255 (724)
| .++..|++ . ....|++|-+..
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecC
Confidence 9 67788877 4 555599997643
No 306
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.59 E-value=0.0098 Score=63.76 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=108.4
Q ss_pred EecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCeeE
Q 004914 61 AVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKA 138 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~ 138 (724)
...++.+.+++.+|.+.-+|. +|+.+..+............ ++..++.++.+|.+..+|..+|++. .......+.+
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 139 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS 139 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec
Confidence 345778889999999999997 78776555443322222222 4677888889999999999887764 3333222221
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe-----EEEEEeCCEEEEE-cCCcEEEEEcCCCce
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV-----HVVKWRTSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V-----~~l~~~~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
+|-. .+..++.++.+|.+..++.. +|............+ .+....+..+..+ .++.+..+|..+|+.
T Consensus 140 ---~p~v---~~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 140 ---PPLV---ANGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred ---CCEE---ECCEEEEECCCCeEEEEEcC-CCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 1211 03567778888999988764 444333222211111 1112223344444 678999999999987
Q ss_pred EEEecCCCCCCCC-----CCCCCceeecCCCeEEEEeCCeEEEEEEeeCC
Q 004914 213 ITFIERPRGSPRP-----ELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~~~~~~~~-----~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+............ ..........++..++++.++.++.||..++.
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 6543321100000 00011122235555555589999999987664
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.58 E-value=0.00046 Score=74.33 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=123.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec--CCCeeEEEcC-CccceeEEEEcCCCC---EEEEEeCCCCEEEEeccCC--ce-
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF--LGNQVKEFPA-HTAAVNDLSFDVDGE---YVGSCSDDGSVVINSLFTD--EK- 127 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~--~~~~~~~~~~-h~~~V~~l~~s~~g~---~l~s~~~Dg~v~iwd~~~~--~~- 127 (724)
..+++|.|+-+|.++.-| +.+.|+ .+++.+.+.. -.-.|-++.|+|... .+++.+ ...-.+|++... ..
T Consensus 29 a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccce
Confidence 446888899898888877 445555 3444333321 122567778887543 355544 455667998752 22
Q ss_pred -EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEEcCCcE
Q 004914 128 -MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGV 202 (724)
Q Consensus 128 -~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~~d~~i 202 (724)
..+.+|. .|+.+.|+|. ....+++++.|-.+..|+.+-..........-....+.+.|+ |.++|.+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q----~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQ----HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCC----CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3456677 9999999998 467899999999999998763223333333334456678898 788888888899
Q ss_pred EEEEcCCCc-eEEEecCCCCCCCCCCCCCceeec---CCCeEEEEeCCeEEEEEEeeC
Q 004914 203 KVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 203 ~i~d~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~ 256 (724)
++||.+.|. ++..+..+ ...+..+.|. -+..+.+..|++|++|+-...
T Consensus 183 ~vwd~r~gs~pl~s~K~~------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGH------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EEEeccCCCcceEEeccc------ceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999654 44454442 2234445552 334444559999999998654
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00071 Score=68.99 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=127.3
Q ss_pred CceEEEEe-cCCEEEEEeCCCeEEEEecCC---C-eeEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccCCceE
Q 004914 55 DAASCVAV-AERMIALGTHAGTVHILDFLG---N-QVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDEKM 128 (724)
Q Consensus 55 ~~i~~~s~-~~~~la~g~~dg~I~i~d~~~---~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~~~ 128 (724)
+.|+.+.+ -.+++.+++.||.++.|.... - .++.+.+|.+.|.+++.+-+|..+.|++. |..++++|+.+-...
T Consensus 10 d~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 10 DVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred ceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence 44555444 567999999999999998754 2 24677889999999999999999999888 999999999874433
Q ss_pred E-EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 129 K-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 129 ~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
. ++..-....+.|.-.-....+..-++...+|.+.+++..-+........ -|..||..+.++ +..+.+. ..|.|.
T Consensus 90 nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 90 NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeE
Confidence 1 1111122223332220000012334445678899888764443333333 378999999998 4544444 578899
Q ss_pred EEEcCC------CceEEEecCCC---CCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 204 VYDAAN------DQRITFIERPR---GSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 204 i~d~~~------~~~~~~i~~~~---~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
-|.... ......+.... +.+..-..+.++.+ +++..+.+- .|..|++++++++..
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 998763 11111111110 11222334556666 566666655 788899999988753
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.54 E-value=0.01 Score=57.71 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=67.3
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-------CccceeEEEEcCCC------CEEEEEeCCCCEEEEeccC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-------HTAAVNDLSFDVDG------EYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-------h~~~V~~l~~s~~g------~~l~s~~~Dg~v~iwd~~~ 124 (724)
.+||||+..||.+.+.|+|++||+.|..+..+.. -..+|.++.|.+.. ..|+....+|.++-+-+..
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 4899999999999999999999998876544433 13467777775421 2366666778777666532
Q ss_pred ------CceEEEeC--C-C-CeeEEEeCCCCCCCCCCEEEEecCC
Q 004914 125 ------DEKMKFDY--H-R-PMKAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 125 ------~~~~~~~~--~-~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
.+...+.+ + . .|+++.++|. .++|++|+..
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-----h~LLlVgG~~ 168 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPK-----HRLLLVGGCE 168 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCC-----CCEEEEeccC
Confidence 12233332 2 3 8999999999 6788777653
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.52 E-value=0.00038 Score=66.04 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=57.3
Q ss_pred ceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCc--eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec
Q 004914 95 AVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE--KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (724)
Q Consensus 95 ~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~--~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (724)
.|++++-+|..+ .+++|+.||.+-+||.+... ...+..|+ +++-|-|+|. .+..+++++.||.+..|+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk----~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK----NPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC----CchheeEecCCCcEEEEcC
Confidence 599999998765 46677889999999998853 23467788 9999999998 5789999999999988864
No 311
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.49 E-value=0.014 Score=66.51 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=90.9
Q ss_pred CCCEEEEE-eCCCCEEEEeccCCceE-EEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc
Q 004914 104 DGEYVGSC-SDDGSVVINSLFTDEKM-KFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS 179 (724)
Q Consensus 104 ~g~~l~s~-~~Dg~v~iwd~~~~~~~-~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~ 179 (724)
+.++|+.- .....++-.|+..|++. .+..+. +|..++-...++...+...++|-.+..+..|+.+..+.+...-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34444443 34578888999998876 467666 566655443343333456677777788888998865533221111
Q ss_pred ----CCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEE
Q 004914 180 ----GEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 180 ----~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~ 252 (724)
.....+|++-. |.+++++.+|.||+||- .|+..++ ..++.+..+..+.. .+|+.+++..+..+-+++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT-----~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKT-----ALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhh-----cCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 23445666666 56666668999999994 3433222 12233334555666 688888888899999998
Q ss_pred Ee
Q 004914 253 IK 254 (724)
Q Consensus 253 ~~ 254 (724)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 75
No 312
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=97.47 E-value=0.00034 Score=59.17 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=60.7
Q ss_pred HHHHHHHHhcchhhhHHHhhhcCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhC
Q 004914 654 DMQVELYADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLG 718 (724)
Q Consensus 654 ~~lv~Ly~~~~~~~ll~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~ 718 (724)
+.|+.+|+.++|+.|.+||+..++.+++.+-+...+++++.|.+.+|..-|+|++||.+...-..
T Consensus 3 TaLlk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999986543
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.0031 Score=68.70 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=121.8
Q ss_pred EEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC---C-CEEEEEeCCCCEEEEeccCCce-EEEeCCC-CeeE
Q 004914 66 MIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD---G-EYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKA 138 (724)
Q Consensus 66 ~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~---g-~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~ 138 (724)
.||++...|.|.+||. .+..+..+..|.++|.+++|-+. . ..++......++.+|+..+|.. ....... ...|
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 6888899999999999 55556778889999999999763 3 4567777778999999998765 4554444 7888
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccC------CccceEeccCCC------------Ce-----------EE--E
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL------GYRDQVLHSGEG------------PV-----------HV--V 187 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~------~~~~~~l~~~~~------------~V-----------~~--l 187 (724)
+.++|- +.+.|+.-+..|.+.+.+..-. |+...+-..|.. .+ .+ .
T Consensus 161 f~~DPf----d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 161 FRVDPF----DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeeCCC----CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 999996 4677877777787776542111 111221111111 00 01 2
Q ss_pred EEe---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-c--CCCeEEEE-eCCeEEEEEEee
Q 004914 188 KWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-Q--DDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 188 ~~~---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~--~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+|+ .+.+...-.+.+.++|+.-..++..++.+.+. ..-+.| + ....|.++ .+|++.+|.-+.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~------akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG------AKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC------cceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 333 25666667788999999988888887766542 334455 2 34566777 999999997765
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.46 E-value=0.03 Score=55.91 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEc-----C-CccceeEEEEcCCCCEEEEEeCC--------CCEEEEeccCCceEE
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFP-----A-HTAAVNDLSFDVDGEYVGSCSDD--------GSVVINSLFTDEKMK 129 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~-----~-h~~~V~~l~~s~~g~~l~s~~~D--------g~v~iwd~~~~~~~~ 129 (724)
+..++++...+ +.++|.....+..+. . .....++++++++|++.++.... |.|..++.. +++..
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 45555665554 455588554432221 1 34578999999999988876644 456667766 45444
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCc---cceEe-c--cCCCCeEEEEEe--CCEEEEE-c
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGY---RDQVL-H--SGEGPVHVVKWR--TSLIAWA-N 198 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~---~~~~l-~--~~~~~V~~l~~~--~~~la~~-~ 198 (724)
+...- ..+.++|+|+ ++.+ ++-+..+.|..++..-.+. ....+ . ...+..-++++. |++.++. .
T Consensus 129 ~~~~~~~pNGi~~s~d-----g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPD-----GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp EEEEESSEEEEEEETT-----SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred EecCcccccceEECCc-----chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 33223 7799999999 6655 4667777777776542222 11222 2 222347788888 6766655 6
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (724)
.+.|.+++.. |+.+..+..+.. .+.+++|
T Consensus 204 ~~~I~~~~p~-G~~~~~i~~p~~------~~t~~~f 232 (246)
T PF08450_consen 204 GGRIVVFDPD-GKLLREIELPVP------RPTNCAF 232 (246)
T ss_dssp TTEEEEEETT-SCEEEEEE-SSS------SEEEEEE
T ss_pred CCEEEEECCC-ccEEEEEcCCCC------CEEEEEE
Confidence 8899999987 888887776621 2456666
No 315
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.16 Score=51.22 Aligned_cols=176 Identities=12% Similarity=0.157 Sum_probs=111.9
Q ss_pred CCeEEEEecCC---Ce-eEEEcCCccceeEEEEcCCCCEEEEEeCC---CCEEEEeccC--CceEEEe---CCC-CeeEE
Q 004914 73 AGTVHILDFLG---NQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFT--DEKMKFD---YHR-PMKAI 139 (724)
Q Consensus 73 dg~I~i~d~~~---~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~--~~~~~~~---~~~-~v~~v 139 (724)
+.-|++|++.. .. ....-.+.+..+-+.|+|++++|.++..+ |.|..|.++. |.+..++ ... +.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 35699999842 22 23344577788899999999998887654 6777777664 6654432 222 55889
Q ss_pred EeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEe--ccCCCC----------eEEEEEe--CCEEEEE--cCCcE
Q 004914 140 SLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVL--HSGEGP----------VHVVKWR--TSLIAWA--NDAGV 202 (724)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l--~~~~~~----------V~~l~~~--~~~la~~--~d~~i 202 (724)
+++++ +++++++. ..|.|.++..+-+|...... ..|.++ +....+. ++++++. ....|
T Consensus 95 svd~~-----g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 95 SVDED-----GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EECCC-----CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 99999 77777765 45778888765445332221 123332 6666666 5677766 45579
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE-E-eCCeEEEEEEeeC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI-G-WGTYIKIASIKTN 256 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g-~d~~i~vw~~~~~ 256 (724)
.+|++..|+....-+.. .....-+..+.| ++++...+ + -+++|-+|.....
T Consensus 170 ~~y~~~dg~L~~~~~~~---v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 170 FLYDLDDGKLTPADPAE---VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEcccCccccccccc---cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99999977654321111 122223556778 55555433 3 7899999998764
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.00027 Score=76.51 Aligned_cols=184 Identities=22% Similarity=0.308 Sum_probs=112.9
Q ss_pred EEEEEeCCCeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEe----------CCCCEEEEeccCCceEEEe---
Q 004914 66 MIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCS----------DDGSVVINSLFTDEKMKFD--- 131 (724)
Q Consensus 66 ~la~g~~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~----------~Dg~v~iwd~~~~~~~~~~--- 131 (724)
.+|+|+..|+|.++|... .....+..|++.|.++.|....+ ++|.+ .-..+.+-|+++|....+.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~ 517 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ 517 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence 689999999999999954 44577888999999999986554 44332 2235678899998766553
Q ss_pred -CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC-eEEEEEe-C----------------
Q 004914 132 -YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP-VHVVKWR-T---------------- 191 (724)
Q Consensus 132 -~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~-V~~l~~~-~---------------- 191 (724)
..+ +|+.+..+.. +++++....+.-+.+|+.+ +........-.-| |+.+.|+ +
T Consensus 518 ~~despI~~irvS~~-----~~yLai~Fr~~plEiwd~k--t~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sm 590 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSS-----GRYLAILFRREPLEIWDLK--TLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSM 590 (1062)
T ss_pred CCCcCcceeeeeccc-----CceEEEEecccchHHHhhc--cchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhh
Confidence 233 9999999988 8999999999999998763 1111111222334 7778887 1
Q ss_pred --CEEEEEcCCcEEEEEcCCCceE-EEecCCCCC-CCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 192 --SLIAWANDAGVKVYDAANDQRI-TFIERPRGS-PRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 192 --~~la~~~d~~i~i~d~~~~~~~-~~i~~~~~~-~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+.++..+ ...+++.+...... ......... .......+.++|. +..++.| .+|.+.+||+..+++.
T Consensus 591 s~n~vv~ds-~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk-~d~lv~GD~~GNl~~WDlg~R~SR 661 (1062)
T KOG1912|consen 591 SENLVVLDS-VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK-DDILVVGDVEGNLVVWDLGRRQSR 661 (1062)
T ss_pred hhceeeecc-ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc-CCeeEeecccCceeEEeccccccc
Confidence 1122111 12223322211100 000000000 0011123457774 4578888 9999999998776554
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.018 Score=61.75 Aligned_cols=174 Identities=15% Similarity=0.102 Sum_probs=101.1
Q ss_pred CCEEEEEeCCCeEEEEec-CCCeeEEEcCCc--c-----ceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHT--A-----AVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~--~-----~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
+..+++|+.+|.+..+|. +|+.+....... + .+..+.-+| .+..+..++.+|.+..||..+++.. ....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 346778888899999998 666543322110 0 000111111 3567888888999999999887654 2221
Q ss_pred CCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-CCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCC
Q 004914 133 HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWRTSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 133 ~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~ 210 (724)
........ . +..+++++.+|.+..++.. ++........ ......+....+..+.++ .+|.+.++|..++
T Consensus 270 -~~~~~p~~--~-----~~~vyv~~~~G~l~~~d~~-tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 270 -SSYQGPAV--D-----DNRLYVTDADGVVVALDRR-SGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred -CCccCceE--e-----CCEEEEECCCCeEEEEECC-CCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC
Confidence 11112222 2 4677788889999988764 3433222211 111222333345555554 7999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEE
Q 004914 211 QRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIA 251 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw 251 (724)
+.+..++.+... ...+....++.+++.+.+|.|+.|
T Consensus 341 ~~~~~~~~~~~~-----~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 341 SFVARLKTDGSG-----IASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEEcCCCc-----cccCCEEECCEEEEEeCCceEEEe
Confidence 998877654321 112223345666666688888765
No 318
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.011 Score=62.44 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=99.7
Q ss_pred cccCCCceE-EEEecCC-EEEEEeC--C---------CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEE--EeCC
Q 004914 50 SLLANDAAS-CVAVAER-MIALGTH--A---------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS--CSDD 114 (724)
Q Consensus 50 ~~~~~~~i~-~~s~~~~-~la~g~~--d---------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s--~~~D 114 (724)
++|..+.+. .|..-|+ +|+..+. | .++++++.+|.....--...++|.++.|+|+|+-++. |-+=
T Consensus 214 sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 214 SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP 293 (566)
T ss_pred cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc
Confidence 344444443 3666555 3433332 2 3678888876654333345789999999999986654 4556
Q ss_pred CCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC---CCeEEEEecccCCccceEeccCCCCeEEEEEe
Q 004914 115 GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 115 g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~ 190 (724)
-.+.|+|++...+..+ .. +=+++-|+|. |++++.++- .|.+-+|+.. +.+....+... ..+-..|+
T Consensus 294 Akvtifnlr~~~v~df--~egpRN~~~fnp~-----g~ii~lAGFGNL~G~mEvwDv~-n~K~i~~~~a~--~tt~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDF--PEGPRNTAFFNPH-----GNIILLAGFGNLPGDMEVWDVP-NRKLIAKFKAA--NTTVFEWS 363 (566)
T ss_pred ceEEEEcCCCCEeEeC--CCCCccceEECCC-----CCEEEEeecCCCCCceEEEecc-chhhccccccC--CceEEEEc
Confidence 7899999976655443 33 6678899999 888877654 4789999875 23333333222 23456788
Q ss_pred --CCEEEEE--c-----CCcEEEEEcCCCceEE
Q 004914 191 --TSLIAWA--N-----DAGVKVYDAANDQRIT 214 (724)
Q Consensus 191 --~~~la~~--~-----d~~i~i~d~~~~~~~~ 214 (724)
|.++.++ . |++++||+.. |..+.
T Consensus 364 PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 7777665 2 7899999975 54444
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.40 E-value=0.018 Score=65.57 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=91.0
Q ss_pred CCCeEEEEec-CCCeeEEEcCCccc-eeEEEEcC-----CCCEEEEEeCCCCEEEEeccCC--ceEE-----EeCCCCee
Q 004914 72 HAGTVHILDF-LGNQVKEFPAHTAA-VNDLSFDV-----DGEYVGSCSDDGSVVINSLFTD--EKMK-----FDYHRPMK 137 (724)
Q Consensus 72 ~dg~I~i~d~-~~~~~~~~~~h~~~-V~~l~~s~-----~g~~l~s~~~Dg~v~iwd~~~~--~~~~-----~~~~~~v~ 137 (724)
....++-.|+ .|+.+..+..|... |.+++=+. ++.-.+.|-.+..+..||.+-. ++.. +.......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4467777788 67778888887654 65543221 1233556777888999998862 2221 11122677
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~ 208 (724)
|++-+.+ .++|+|+.+|.|++|++. ..+..+.+++-..||.+|..+ |++|+++.+..+.+++..
T Consensus 582 ~~aTt~~------G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTED------GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred EEEecCC------ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 8877776 799999999999999863 223344556667899999988 899999888889898864
No 320
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.40 E-value=0.15 Score=53.05 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=52.5
Q ss_pred EEecCCEEEEEeC----------CCeEEEEec-CCCeeEEEcCCc-------cceeEEEEcCCCCEEEEEe-C-CCCEEE
Q 004914 60 VAVAERMIALGTH----------AGTVHILDF-LGNQVKEFPAHT-------AAVNDLSFDVDGEYVGSCS-D-DGSVVI 119 (724)
Q Consensus 60 ~s~~~~~la~g~~----------dg~I~i~d~-~~~~~~~~~~h~-------~~V~~l~~s~~g~~l~s~~-~-Dg~v~i 119 (724)
++++|+.+.++.. ++.|.+||. ++..+..+.... ..-..++++|+|+++.... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999997776655 789999999 566666654321 1234678999999888766 3 688999
Q ss_pred EeccCCceEE
Q 004914 120 NSLFTDEKMK 129 (724)
Q Consensus 120 wd~~~~~~~~ 129 (724)
.|+.++++..
T Consensus 133 vD~~~~kvv~ 142 (352)
T TIGR02658 133 VDLEGKAFVR 142 (352)
T ss_pred EECCCCcEEE
Confidence 9999987653
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.38 E-value=0.031 Score=55.82 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=105.4
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEc-CCCCEEEEEeCCCCEEEEeccCCceEEE---e-C
Q 004914 59 CVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFD-VDGEYVGSCSDDGSVVINSLFTDEKMKF---D-Y 132 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s-~~g~~l~s~~~Dg~v~iwd~~~~~~~~~---~-~ 132 (724)
+|.+ ++.++++....|.|+.|+..+.....+.... ..++.+. ++|. ++.+..+ .+.++|..+++...+ . .
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEETT
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeeccCC
Confidence 5666 6677777778999999999777665544443 5667777 6655 4444444 455559888766532 1 2
Q ss_pred --CC-CeeEEEeCCCCCCCCCCEEEEecCC--------CeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--
Q 004914 133 --HR-PMKAISLDPDYTRKMSRRFVAGGLA--------GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-- 197 (724)
Q Consensus 133 --~~-~v~~v~~~p~~~~~~~~~l~~g~~d--------g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-- 197 (724)
.. ..+.++++|+ |+..++.... |.+..++.. + ....+...-....+|+|+ ++.+.++
T Consensus 82 ~~~~~~~ND~~vd~~-----G~ly~t~~~~~~~~~~~~g~v~~~~~~--~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPD-----GNLYVTDSGGGGASGIDPGSVYRIDPD--G-KVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp CSCTEEEEEEEE-TT-----S-EEEEEECCBCTTCGGSEEEEEEETT--S-EEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred CcccCCCceEEEcCC-----CCEEEEecCCCccccccccceEEECCC--C-eEEEEecCcccccceEECCcchheeeccc
Confidence 22 7899999999 7766665433 345544442 2 233333334456789999 5666555
Q ss_pred cCCcEEEEEcCCCce-EE---E-ecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEe
Q 004914 198 NDAGVKVYDAANDQR-IT---F-IERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~-~~---~-i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
..+.|..|++..... +. . ...+... ..+..++. .++++.++. ..+.|.+++..
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 466788888863221 11 1 1222111 12445666 456655555 57778888643
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.37 E-value=0.00059 Score=45.93 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.7
Q ss_pred eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
..++..|. +|++++|+|+ +..+++|+.||.|++|+
T Consensus 4 ~~~~~~h~~~i~~i~~~~~-----~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPD-----GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETT-----SSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecc-----cccceeeCCCCEEEEEC
Confidence 34678888 9999999999 89999999999999985
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.015 Score=59.01 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCC-eeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCc--eEEEeC-
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE--KMKFDY- 132 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~--~~~~~~- 132 (724)
+++|..+ .+..++.+.+|.|.|+... .+..+..| ..+++++|+-+.. +|..|-..|.|.|||++... ...+..
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~ 278 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVAN 278 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhh
Confidence 5777655 7889999999999999544 45677777 7899999998776 56667779999999998733 333322
Q ss_pred -CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc-ceEec-cCCCCeEEEEEeC---CEEEEE
Q 004914 133 -HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR-DQVLH-SGEGPVHVVKWRT---SLIAWA 197 (724)
Q Consensus 133 -~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~-~~~l~-~~~~~V~~l~~~~---~~la~~ 197 (724)
.. ||..++.-+.-+-...+-++++... ....|+....... ..++. +..|.+.+++.++ .++++.
T Consensus 279 ~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 279 VTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred hccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence 22 6666554332011112233333332 2334544322222 22222 2356666777663 444444
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.29 E-value=0.073 Score=51.04 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=58.4
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCcc-ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-CeeE
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTA-AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKA 138 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~-~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~ 138 (724)
-|++++.|+.+|.+++.+. +|.+...+..-.. .+. -..++++..+..|+.|++.+..|..+.. +...+... ...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 5788999999999999999 5656666644221 222 3468889999999999999999998844 44555444 4445
Q ss_pred EEeCCC
Q 004914 139 ISLDPD 144 (724)
Q Consensus 139 v~~~p~ 144 (724)
-++.|.
T Consensus 141 P~i~~g 146 (354)
T KOG4649|consen 141 PVIAPG 146 (354)
T ss_pred ceecCC
Confidence 556663
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.28 E-value=0.014 Score=57.83 Aligned_cols=182 Identities=18% Similarity=0.123 Sum_probs=105.4
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE-eCC-C-
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF-DYH-R- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~-~~~-~- 134 (724)
..++++.+.+++.++.+..||. +|+.+..+.. .+.+...- ...+..++.++.++.+..+|..+|+.. .. ... .
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 3347778888899999999998 7877766554 22221111 234566777778889999998887764 32 222 1
Q ss_pred -C-eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC----e-------EEEEEeCCEEEEE-cCC
Q 004914 135 -P-MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP----V-------HVVKWRTSLIAWA-NDA 200 (724)
Q Consensus 135 -~-v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~----V-------~~l~~~~~~la~~-~d~ 200 (724)
. ......... +..++++..+|.+..++.. +|...........+ + ..+.+.+..+..+ .++
T Consensus 110 ~~~~~~~~~~~~-----~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 110 AGVRSSSSPAVD-----GDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp CSTB--SEEEEE-----TTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred cccccccCceEe-----cCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 1 111112222 4677888778899888764 45544333332211 1 2233333345444 566
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+..+|+.+++.+.... ... ........+..++++ .++.|..||+++++
T Consensus 184 ~~~~~d~~tg~~~w~~~-~~~-------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP-ISG-------IYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SEEEEETTTTEEEEEEC-SS--------ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEec-CCC-------ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 54444999998664322 211 122122455666666 69999999998865
No 326
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.26 E-value=0.04 Score=56.10 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=93.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-E--------
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-M-------- 128 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~-------- 128 (724)
|....++.|++|+.+| +.+++. .......+ .+..+|..+...++-+.+++-+ ||.+.++++..-.. .
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4556789999999999 888888 33322222 2333499999999888777665 49999999876111 1
Q ss_pred -------EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-eEecc--CCCCeEEEEEeCCEEEEEc
Q 004914 129 -------KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-QVLHS--GEGPVHVVKWRTSLIAWAN 198 (724)
Q Consensus 129 -------~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-~~l~~--~~~~V~~l~~~~~~la~~~ 198 (724)
.+...+.+...+.... . .+...++......+.+|...-..... ..+.. -...+.++.|.++.++.+.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~--~-~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~ 155 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGG--H-EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT 155 (275)
T ss_pred ccccccccccccCCeeEEeeccc--c-ccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe
Confidence 1111124444441111 0 13333444444477777543211122 22222 3477899999999999887
Q ss_pred CCcEEEEEcCCCceEEEe
Q 004914 199 DAGVKVYDAANDQRITFI 216 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i 216 (724)
.+...+.|+.++......
T Consensus 156 ~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred CCceEEEecCCCCceEEe
Confidence 788999999977665443
No 327
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=97.24 E-value=0.0011 Score=56.20 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--
Q 004914 493 YEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-- 570 (724)
Q Consensus 493 ~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-- 570 (724)
.|+++.+|+.. ++..+..++.. ++..+++.+...+++.. .+.+|+.||..+|+|++||+.|.++.+
T Consensus 2 DTaLlk~Yl~~--~~~~l~~llr~--~N~C~~~~~e~~L~~~~--------~~~eL~~lY~~kg~h~~AL~ll~~l~~~~ 69 (108)
T PF10366_consen 2 DTALLKCYLET--NPSLLGPLLRL--PNYCDLEEVEEVLKEHG--------KYQELVDLYQGKGLHRKALELLKKLADEE 69 (108)
T ss_pred cHHHHHHHHHh--CHHHHHHHHcc--CCcCCHHHHHHHHHHcC--------CHHHHHHHHHccCccHHHHHHHHHHhccc
Confidence 46788888765 45566666665 36778777777776655 899999999999999999999999866
Q ss_pred -------------chhhHHHHhcC--ChHHHHHHHHHH
Q 004914 571 -------------PYIFDFIENHN--LHDAIREKVVQL 593 (724)
Q Consensus 571 -------------~~~~~~i~~~~--l~~~~~~~~~~L 593 (724)
..+.+|+++.+ ..+.|.+++.++
T Consensus 70 ~~~~~~~~~~~~~~~iv~yL~~L~~~~~dLI~~~s~Wv 107 (108)
T PF10366_consen 70 DSDEEDPFLSGVKETIVQYLQKLGNEDLDLIFEYSDWV 107 (108)
T ss_pred ccccccccccCchhHHHHHHHhCChhhhHHHHHhcccc
Confidence 11377777763 667777776654
No 328
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00096 Score=71.14 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=73.3
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCcccee-EEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC--
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY-- 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~-- 132 (724)
..-|+|.-..||+++.+|.|.+...+.+.+.++.-|...|+ +++|.|||+.|+.|-.||+|++-|..++... ....
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~ 104 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSV 104 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccccc
Confidence 44689988999999999999999998888888887887787 9999999999999999999999999986543 3222
Q ss_pred CCCeeEEEeCCC
Q 004914 133 HRPMKAISLDPD 144 (724)
Q Consensus 133 ~~~v~~v~~~p~ 144 (724)
..+|.++-|+|.
T Consensus 105 e~~is~~~w~~~ 116 (665)
T KOG4640|consen 105 ETDISKGIWDRI 116 (665)
T ss_pred ccchheeecccc
Confidence 227888888654
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.20 E-value=0.0056 Score=65.38 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 127 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (724)
++|+...++.|+.||+|.+||.+.+..... ...-..+.++|+|+|..+++|+..|.+.+||+.-+.+
T Consensus 267 ~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 267 RSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 677889999999999999999865543332 3445678899999999999999999999999876443
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.15 Score=55.01 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=52.2
Q ss_pred eEEEEecCCEEEEEeCC----------C-eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC
Q 004914 57 ASCVAVAERMIALGTHA----------G-TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 57 i~~~s~~~~~la~g~~d----------g-~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
+.+.++.|..||+...+ . .|.||+..|+.+..+.--.+.|.++.|+.+ ..|+....||.++++|+.+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 44566666666665443 2 599999999998776554489999999875 45778889999999999754
Q ss_pred c
Q 004914 126 E 126 (724)
Q Consensus 126 ~ 126 (724)
.
T Consensus 112 ~ 112 (410)
T PF04841_consen 112 F 112 (410)
T ss_pred e
Confidence 4
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.17 E-value=0.13 Score=51.82 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=117.8
Q ss_pred EEEe-cCCEEEEEeCCCe-EEEEec-CCCeeEEEcCCccce--eEEEEcCCCCEEEEEeC-----CCCEEEEeccC--Cc
Q 004914 59 CVAV-AERMIALGTHAGT-VHILDF-LGNQVKEFPAHTAAV--NDLSFDVDGEYVGSCSD-----DGSVVINSLFT--DE 126 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~-I~i~d~-~~~~~~~~~~h~~~V--~~l~~s~~g~~l~s~~~-----Dg~v~iwd~~~--~~ 126 (724)
+.+| .+..++++-.-|+ ..+||. ++.....+....+.. -.-.||+||++|.+.-. .|.|-|||... .+
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~r 90 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRR 90 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEE
Confidence 5566 4556777766664 557888 455444443322211 12469999999988643 47899999984 33
Q ss_pred eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC-------CCeEEEEecc----------cCCccce--Ee--ccCCCCe
Q 004914 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL-------AGHLYLNSKK----------WLGYRDQ--VL--HSGEGPV 184 (724)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-------dg~v~l~~~~----------~~~~~~~--~l--~~~~~~V 184 (724)
+-.+..+. ....+.+.|+ +..++++.. .|..++.-.. -+|.... .+ ..|...|
T Consensus 91 i~E~~s~GIGPHel~l~pD-----G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPD-----GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred EeEecCCCcChhhEEEcCC-----CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 44577777 7788999999 767776532 1233332000 0111111 12 1144556
Q ss_pred EEEEEe--CCEEEEEc-CCc-------EEEEEcCCCceEEEecCCCC-CCCCCCCCCceee-cCCCeE-EEE-eCCeEEE
Q 004914 185 HVVKWR--TSLIAWAN-DAG-------VKVYDAANDQRITFIERPRG-SPRPELLLPHLVW-QDDTLL-VIG-WGTYIKI 250 (724)
Q Consensus 185 ~~l~~~--~~~la~~~-d~~-------i~i~d~~~~~~~~~i~~~~~-~~~~~~~~~~l~~-~~~~~l-~~g-~d~~i~v 250 (724)
..+++. |.+++... .+. +-+++ .++.+..+..+.. ......++.++++ .++..+ +++ .++++.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 666666 34433331 111 22222 2222333333321 1234457788888 455555 444 8999999
Q ss_pred EEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecCCceEE
Q 004914 251 ASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVV 297 (724)
Q Consensus 251 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~ 297 (724)
||..++.-...... --+||+++.++.+++
T Consensus 244 ~d~~tg~~~~~~~l------------------~D~cGva~~~~~f~~ 272 (305)
T PF07433_consen 244 WDAATGRLLGSVPL------------------PDACGVAPTDDGFLV 272 (305)
T ss_pred EECCCCCEeecccc------------------CceeeeeecCCceEE
Confidence 99887653211110 247899998877433
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0011 Score=43.42 Aligned_cols=38 Identities=34% Similarity=0.654 Sum_probs=33.6
Q ss_pred CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEe
Q 004914 84 NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (724)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (724)
..+..+..|...|.+++|++.+..+++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778899999999999999999999999999996
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.00052 Score=75.40 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=112.5
Q ss_pred eEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC--CEEEEeccC--CceEE
Q 004914 57 ASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFT--DEKMK 129 (724)
Q Consensus 57 i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~--~~~~~ 129 (724)
.+| |+.+.+.|++|+..|.|++|+. +|.......+|..+|+.+.=+.+|...++.+.-. -..+|++.+ +....
T Consensus 1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS 1183 (1516)
T ss_pred eeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccc
Confidence 455 5667789999999999999999 6776778899999999999999999876655432 467899876 22333
Q ss_pred EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-ecc---CCCCeEEEEEeC--CEEEEEcCCcEE
Q 004914 130 FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHS---GEGPVHVVKWRT--SLIAWANDAGVK 203 (724)
Q Consensus 130 ~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~---~~~~V~~l~~~~--~~la~~~d~~i~ 203 (724)
+. .-.++.|+.. ...-+.|+......+|+.. ++.+..+ +.+ ..-.-.+..|++ .+|.+ || .
T Consensus 1184 f~---ed~~vkFsn~-----~q~r~~gt~~d~a~~YDvq-T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--dG--v 1250 (1516)
T KOG1832|consen 1184 FD---EDKAVKFSNS-----LQFRALGTEADDALLYDVQ-TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--DG--V 1250 (1516)
T ss_pred cc---ccceeehhhh-----HHHHHhcccccceEEEecc-cCcHHHHhcCcchhhhhhccccccCCCcceEee--Cc--e
Confidence 32 4567788776 3444556655677888875 3443333 222 111124556663 44443 33 5
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeCC
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+||++..+.+..+..-. . +......+.|..+++.. .|||+++-.
T Consensus 1251 LWDvR~~~aIh~FD~ft-~-----~~~G~FHP~g~eVIINS----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFT-D-----YGGGGFHPSGNEVIINS----EIWDMRTFK 1294 (1516)
T ss_pred eeeeccHHHHhhhhhhe-e-----cccccccCCCceEEeec----hhhhhHHHH
Confidence 89999877666554332 1 11111113455555542 388888743
No 334
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.01 E-value=0.042 Score=64.09 Aligned_cols=289 Identities=12% Similarity=0.079 Sum_probs=141.8
Q ss_pred CchhhHHHHHhcccHHHHHHHHHhcCC----C-chhHhH-------------------------------HHHHHHHHHh
Q 004914 395 DAEDHIAWLLEHGWHEKALAAVEAGQG----R-SELLDE-------------------------------VGSRYLDHLI 438 (724)
Q Consensus 395 ~~~d~i~~ll~~~~~~~Al~~~~~~~~----~-~~~~~~-------------------------------i~~~~~~~l~ 438 (724)
+|..-|.-+.+.|++++|+.+.+.-.. + ...... +....++.+.
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 466677888888999999888654211 1 011111 1122234444
Q ss_pred ccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcC---CCCCCCHHHHHHHHHHHHcCCccHHHHHHHhh
Q 004914 439 VERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPT---ENPRLRDTAYEVALVALATNPSFHKYLLSTVK 515 (724)
Q Consensus 439 ~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~---~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~ 515 (724)
..|++++|.+++......+...|..+|.-|...+..+.-...+.. .....+...|..++..|.... ..+.-.+.
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g-~~~~a~~i-- 347 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-LLEHAKQA-- 347 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-chHHHHHH--
Confidence 556666666655555444555566666666555544332222211 112234455555555554321 11111110
Q ss_pred cCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHHHHHHHHHc
Q 004914 516 SWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLML 595 (724)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~L~~ 595 (724)
...+... .-......+..|...|.+.|+.++|..++-+...+++..| .. .+..+..
T Consensus 348 ------------~~~m~~~--g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~-------n~---lI~~y~~ 403 (697)
T PLN03081 348 ------------HAGLIRT--GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW-------NA---LIAGYGN 403 (697)
T ss_pred ------------HHHHHHh--CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH-------HH---HHHHHHH
Confidence 0000000 0112234677889999999999999999888766553221 11 0111111
Q ss_pred -cChhHHHHHhhhc-CCCCChHH-----HHHHHhcccccCCchhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhc-chh
Q 004914 596 -LDCKRAVSLLIQN-KDLITPSE-----VVTQLLNARDKCDSRYFLHLYLHALFEVNP-HAGKDFHDMQVELYADY-DLK 666 (724)
Q Consensus 596 -~~~~~~~~ll~~~-~~~~~~~~-----vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~-~~~~~~~~~lv~Ly~~~-~~~ 666 (724)
-+.++++++|-+. ...+.|+. |+..+... +.......+++.+....+ ..+..+++.++.+|++. ..+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~----g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS----GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 1234444444331 01122222 22222222 223334466666655433 23445788889988753 234
Q ss_pred hhHHHhhhcCC-----------------CCHHHHHHHHhc--------CCCchhHHHHHhccCChHHHHHHHH
Q 004914 667 MLLPFLRSSQH-----------------YTLEKAYEICVK--------RDLLREQVFILGRMGNTKHALAVII 714 (724)
Q Consensus 667 ~ll~fL~~~~~-----------------y~~~~al~~c~~--------~~~~~e~v~Ll~k~g~~~~Al~l~~ 714 (724)
+.+++++.... =+++.|.++.++ -..+.-++-+|++.|++++|.++.-
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 44555554321 112222222221 2355667788999999999999863
No 335
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.022 Score=60.04 Aligned_cols=168 Identities=13% Similarity=0.162 Sum_probs=108.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-----------CCCEEEEeccC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-----------DGSVVINSLFT 124 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-----------Dg~v~iwd~~~ 124 (724)
...|||.|.+|++--..| |.+|-- +...++.| .|. .|.-+.|||..++|+|-|. ...++|||+.+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 567999999998876666 777764 22334444 465 4788999999999998652 24699999999
Q ss_pred CceEE-EeC--CC-Cee-EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC---CCCeEEEEEe--CCEE
Q 004914 125 DEKMK-FDY--HR-PMK-AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG---EGPVHVVKWR--TSLI 194 (724)
Q Consensus 125 ~~~~~-~~~--~~-~v~-~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~---~~~V~~l~~~--~~~l 194 (724)
|...+ +.. .. +++ -+.||-+ ++++|.-..+ .|.+|+.. +...+... -..|....|+ +++|
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~D-----dKy~Arm~~~-sisIyEtp----sf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHD-----DKYFARMTGN-SISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred cchhcceeccCCCccccceEEeccC-----CceeEEeccc-eEEEEecC----ceeeecccccCCccccCcccCCCcceE
Confidence 87642 333 22 332 3578888 7888877764 56666532 12222221 2346677888 4666
Q ss_pred EEEc---C---CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 195 AWAN---D---AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 195 a~~~---d---~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
|.-+ + ..+.+..+.+++.+.+....+ ..-|.+.| .+|.+|++-
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfn------VsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFN------VSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeecccee------eeccEEEeccCCcEEEEE
Confidence 6431 2 247788888887776533332 23577889 677777765
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0033 Score=63.52 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=75.8
Q ss_pred eEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCce-EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 86 VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEK-MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
..-+..|...|.+++|+|..+ .+..++.+.+|+|.|+.+..+ ..+..++++++++|+-+ ..+.+.+|...|.|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDld----e~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLD----ERHVIYAGLQNGMVL 261 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccC----CcceeEEeccCceEE
Confidence 344566778999999999887 688899999999999999655 45677789999999988 468899999999999
Q ss_pred EEecccCCccceEecc--CCCCeEEEEE
Q 004914 164 LNSKKWLGYRDQVLHS--GEGPVHVVKW 189 (724)
Q Consensus 164 l~~~~~~~~~~~~l~~--~~~~V~~l~~ 189 (724)
+|+.+........+.+ ...||..++.
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAP 289 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecc
Confidence 9998755433333222 2345555443
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.003 Score=69.37 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred ceEEEEecCCEEEEEe----CCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE-
Q 004914 56 AASCVAVAERMIALGT----HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF- 130 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~----~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~- 130 (724)
.+++|.|...++|+++ ..|+|.||--+|.+.+... ..-.+++++|+|..-.|++|-.-|.+.+|...+.+..++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 3667889888888875 4689999877776532221 112356799999988899999999999999988777664
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
..|. +|..+.|+|+ |..++++..-|.+.+|...
T Consensus 98 ~th~a~i~~l~wS~~-----G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHD-----GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCC-----CCeEEEcCCCceeEEEEee
Confidence 4566 9999999999 8999999999999999765
No 338
>PLN03077 Protein ECB2; Provisional
Probab=96.92 E-value=0.13 Score=61.60 Aligned_cols=276 Identities=10% Similarity=0.002 Sum_probs=141.4
Q ss_pred CchhhHHHHHhcccHHHHHHHHHhcC----CC-chhHhH-------------------------------HHHHHHHHHh
Q 004914 395 DAEDHIAWLLEHGWHEKALAAVEAGQ----GR-SELLDE-------------------------------VGSRYLDHLI 438 (724)
Q Consensus 395 ~~~d~i~~ll~~~~~~~Al~~~~~~~----~~-~~~~~~-------------------------------i~~~~~~~l~ 438 (724)
.|...|.-+.+.|++++|+.+.+.-. .+ ...... +....++.+.
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 57778888999999999998865321 11 111111 1122333344
Q ss_pred ccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcC---CCCCCCHHHHHHHHHHHHcCCccHHHHHHHhh
Q 004914 439 VERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPT---ENPRLRDTAYEVALVALATNPSFHKYLLSTVK 515 (724)
Q Consensus 439 ~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~---~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~ 515 (724)
..|++++|..++.+....+...|..+|.-+.+.+....-...+.. .....+...|..+|..|.... +.+.-.++
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g-~~~~a~~l-- 310 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG-DERLGREM-- 310 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHH--
Confidence 455556665555544444444555555555555443322221111 111223444555554443321 11111110
Q ss_pred cCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHHHHHHHHHc
Q 004914 516 SWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLML 595 (724)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~L~~ 595 (724)
....... .-......+..|...|.+.|++++|.+++-++..+++..| ..+ +..+.+
T Consensus 311 ------------~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~-------n~l---i~~~~~ 366 (857)
T PLN03077 311 ------------HGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW-------TAM---ISGYEK 366 (857)
T ss_pred ------------HHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH-------HHH---HHHHHh
Confidence 0000000 0122345788999999999999999999988876553322 111 111111
Q ss_pred -cChhHHHHHhhh---c---CCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhh
Q 004914 596 -LDCKRAVSLLIQ---N---KDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKML 668 (724)
Q Consensus 596 -~~~~~~~~ll~~---~---~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~l 668 (724)
-+.+++++++-+ . .+......++..+.+. +........++.+.......+....|.|+..|++-.
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g---- 438 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL----GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---- 438 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC----
Confidence 123445555443 1 1223344455555433 222333345555666665566778999999998743
Q ss_pred HHHhhhcCCCCHHHHHHHHhcC-----CCchhHHHHHhccCChHHHHHHHHH
Q 004914 669 LPFLRSSQHYTLEKAYEICVKR-----DLLREQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 669 l~fL~~~~~y~~~~al~~c~~~-----~~~~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
++++|+++..+- --|..++.-|.+.|+.++|+.+.-+
T Consensus 439 ----------~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 439 ----------CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ----------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 244444444321 2466677777788888888777644
No 339
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.83 E-value=0.0071 Score=58.94 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=86.5
Q ss_pred cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceE--EEeCCC------CeeEEEeCCCCCCCCCCEEEEecCC
Q 004914 90 PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKM--KFDYHR------PMKAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 90 ~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~--~~~~~~------~v~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
.+|..-|++++|+.|...++|+ .|-.|.+|++.- +... -++.+. -|++..|+|. ....|.-.++.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~----~cn~fmYSsSk 243 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE----MCNVFMYSSSK 243 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh----HcceEEEecCC
Confidence 3577788999999998888776 467899999875 2222 233332 5788999998 35778888889
Q ss_pred CeEEEEecccCC---ccceEe------------ccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCC-CceEEEecCC
Q 004914 160 GHLYLNSKKWLG---YRDQVL------------HSGEGPVHVVKWR--TSLIAWANDAGVKVYDAAN-DQRITFIERP 219 (724)
Q Consensus 160 g~v~l~~~~~~~---~~~~~l------------~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~-~~~~~~i~~~ 219 (724)
|.|.+.+.+... .+.+.+ .+....|..+.|+ |++|++-.--++++||++. ..++.+++.+
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 999998776221 111111 1122556778888 7788887778999999984 5577776544
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.80 E-value=0.052 Score=53.73 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCeEEEEec-CCCeeEEEcCCccceeEEE--EcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCCCC
Q 004914 73 AGTVHILDF-LGNQVKEFPAHTAAVNDLS--FDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRK 148 (724)
Q Consensus 73 dg~I~i~d~-~~~~~~~~~~h~~~V~~l~--~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~ 148 (724)
+|+|..||. +|+.+.....- ..+.... ..+++..+++++.++.+..||..+|+.. +.....++.......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----- 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD----- 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE-----
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec-----
Confidence 688999998 77777665431 1122222 2335777888899999999999887754 444433222211111
Q ss_pred CCCEEEEecCCCeEEEEecccCCccceEe-ccC----C-CCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCC
Q 004914 149 MSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSG----E-GPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 149 ~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~----~-~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~ 219 (724)
+..+++++.++.+..++.. +|...... ... . .......+.+..++.+ .++.+..+|..+|+.+......
T Consensus 76 -~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 76 -GGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -TTEEEEEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -ccccccccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 3566666677788887753 45554442 211 1 1122344446655555 6899999999999998876653
No 341
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.79 E-value=0.47 Score=49.45 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=95.3
Q ss_pred CeEEEEecC-CCeeEEEcCCccceeEEEEcCCCCEEEEEeC----------CCCEEEEeccCCceE-EEeCCC-------
Q 004914 74 GTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD----------DGSVVINSLFTDEKM-KFDYHR------- 134 (724)
Q Consensus 74 g~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~----------Dg~v~iwd~~~~~~~-~~~~~~------- 134 (724)
|+|.++|.. ++.+.++..-..+- .+ ++|+|+.+..+.. +..|.+||..+.+.. .+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999994 44456665433332 24 8999998766654 789999999996654 333211
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEec-C-CCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEEcCCcEEEEEcC-C
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGG-L-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWANDAGVKVYDAA-N 209 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~-~-dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~~d~~i~i~d~~-~ 209 (724)
....++++|+ |+++++.. . ++.|.+.+.. .++....+.-.. ...-...+ ..+.+.+.|+......+. +
T Consensus 105 ~~~~~~~ls~d-----gk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSLTPD-----NKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEECCC-----CCEEEEecCCCCCEEEEEECC-CCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCC
Confidence 3457899999 88887665 3 6778887764 333333333222 11112222 233344445544433332 1
Q ss_pred CceE-EEecC--CCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeCC
Q 004914 210 DQRI-TFIER--PRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 210 ~~~~-~~i~~--~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
|+.. ...+. ....+.. ..+.....++..+.++..|.|.+.|+....
T Consensus 178 g~~~~~~~~vf~~~~~~v~--~rP~~~~~dg~~~~vs~eG~V~~id~~~~~ 226 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLI--NHPAYSNKSGRLVWPTYTGKIFQIDLSSGD 226 (352)
T ss_pred CceEEeeeeeecCCccccc--cCCceEcCCCcEEEEecCCeEEEEecCCCc
Confidence 2211 11110 1000000 011222247888888866999999975543
No 342
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.76 E-value=0.25 Score=59.54 Aligned_cols=100 Identities=4% Similarity=-0.046 Sum_probs=48.0
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc----ChhhHHHHHHHHhhcCCCCc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG----SASAWERWVFHFAHLRQLPV 476 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~----~~~~we~~i~~F~~~~~l~~ 476 (724)
..+.+.|.+++|+.+++.-..+.. .....-+..+...+++++|.+++...... +...|..+|.-+.+.+.++.
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~pd~---~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRNPTL---STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCCCCH---HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 445566777777777665443111 12233344444556666666655544321 23345555555555555443
Q ss_pred ccccC---cCCCCCCCHHHHHHHHHHHHcC
Q 004914 477 LVPYM---PTENPRLRDTAYEVALVALATN 503 (724)
Q Consensus 477 L~~~l---~~~~~~l~~~~~~~~L~~~l~~ 503 (724)
-...+ +......+...|..++..|...
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 22222 1111223455556665555443
No 343
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.73 E-value=0.28 Score=57.32 Aligned_cols=251 Identities=11% Similarity=0.040 Sum_probs=131.9
Q ss_pred CchhhHHHHHhcccHHHHHHHHHhcCC----CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc----cChhhHHHHHH
Q 004914 395 DAEDHIAWLLEHGWHEKALAAVEAGQG----RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR----GSASAWERWVF 466 (724)
Q Consensus 395 ~~~d~i~~ll~~~~~~~Al~~~~~~~~----~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~----~~~~~we~~i~ 466 (724)
+|...|.-|.+.|++.+|+++.+.-.. ..+ .......+..+...++++.|.++...... .+...+..++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~--~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLP--ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 577788999999999999998764321 111 12344555566666777777766554432 23345566666
Q ss_pred HHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhc-----CCCCccChHHHHHHHhhhh------
Q 004914 467 HFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKS-----WPPVIYSALPVISAIEPQL------ 535 (724)
Q Consensus 467 ~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~-----~~~~l~~~~~~~~~~~~~~------ 535 (724)
.+.+.+.++.-...+..- +..+...|..++..|.... +.+.-+++++. ..++.+....++.++-...
T Consensus 167 ~y~k~g~~~~A~~lf~~m-~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcC-CCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 666666544433332221 1235667888888887653 33332333221 1122222223332221100
Q ss_pred -------c-cCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHHHHHHHHHc-cChhHHHHHhh
Q 004914 536 -------N-SSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLML-LDCKRAVSLLI 606 (724)
Q Consensus 536 -------~-~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~L~~-~~~~~~~~ll~ 606 (724)
. .-......+..|...|.+.|++++|..++-+...+++..| .. .+..+.+ -+.++++++|-
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~-------n~---li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW-------NS---MLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHH-------HH---HHHHHHhCCCHHHHHHHHH
Confidence 0 0112233566788899999999999999988776654322 11 1111111 23455666654
Q ss_pred hc-CCCCCh-----HHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 004914 607 QN-KDLITP-----SEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY 663 (724)
Q Consensus 607 ~~-~~~~~~-----~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~ 663 (724)
+. ...+.| ..++..+.+.+ ........++.+.......+....+.++..|++.
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLA----LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhcc----chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 31 011222 23333333221 1222223444455555455667889999999864
No 344
>PLN03077 Protein ECB2; Provisional
Probab=96.70 E-value=0.16 Score=60.94 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCCchh
Q 004914 542 DALKEALAELYVIDGHYEKAFSLYADLMKPYI 573 (724)
Q Consensus 542 ~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~ 573 (724)
...+..|...|.+.|++++|++++-++..+++
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 45777899999999999999999988877654
No 345
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.21 Score=52.97 Aligned_cols=107 Identities=14% Similarity=0.274 Sum_probs=74.2
Q ss_pred eEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecC-----------CCeEEE
Q 004914 97 NDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGL-----------AGHLYL 164 (724)
Q Consensus 97 ~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~-----------dg~v~l 164 (724)
+-+.|||-|++|+|-..-| |.+|.-.+ +.+.++ .|..|.-+.|||. .+++++-+. ...+++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~Vq~idfSP~-----EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPGVQFIDFSPN-----EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCCceeeecCCc-----cceEEEecCCccccCcccCCCceEEE
Confidence 4578999999999987765 67786555 333333 4568889999999 788887542 246899
Q ss_pred EecccCCccceEecc--CCCCeEE-EEEe--CCEEEEEcCCcEEEEEcCCCc
Q 004914 165 NSKKWLGYRDQVLHS--GEGPVHV-VKWR--TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 165 ~~~~~~~~~~~~l~~--~~~~V~~-l~~~--~~~la~~~d~~i~i~d~~~~~ 211 (724)
|+.. .|.....++. ....++. ..|+ ++++|.....+|.||+..+-.
T Consensus 287 WDI~-tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ 337 (698)
T KOG2314|consen 287 WDIA-TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM 337 (698)
T ss_pred EEcc-ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee
Confidence 9986 5655554444 2222222 3566 788888877899999987643
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.075 Score=56.07 Aligned_cols=132 Identities=15% Similarity=0.110 Sum_probs=90.3
Q ss_pred EEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCE--E-----EEEeCCCCEEEEeccC-Cc--eEEEeCCC---
Q 004914 69 LGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEY--V-----GSCSDDGSVVINSLFT-DE--KMKFDYHR--- 134 (724)
Q Consensus 69 ~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~--l-----~s~~~Dg~v~iwd~~~-~~--~~~~~~~~--- 134 (724)
.|.....++-.|+ .|+.+.+++-|.. |+-+.+.|+++. + +.|-.|..|.-||.+- +. +....++.
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 3444456666777 5666777877776 666777776442 2 2355677888899875 22 22223332
Q ss_pred --CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcC
Q 004914 135 --PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 135 --~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~ 208 (724)
...|.+-..+ .++++|+.+|.|++|++. .......+++-..+|..+... |.+|.++.+..+.+.++.
T Consensus 430 k~nFsc~aTT~s------G~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 430 KNNFSCFATTES------GYIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccceeeecCC------ceEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 4555555444 799999999999999883 334455567777889888776 999999888888888875
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.068 Score=61.38 Aligned_cols=211 Identities=19% Similarity=0.160 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCCCcccccCcCC--CCCC-CHHHHHHHHHHHHcCCc-----------cH-----HHHHHHhhcCCCCccC
Q 004914 463 RWVFHFAHLRQLPVLVPYMPTE--NPRL-RDTAYEVALVALATNPS-----------FH-----KYLLSTVKSWPPVIYS 523 (724)
Q Consensus 463 ~~i~~F~~~~~l~~L~~~l~~~--~~~l-~~~~~~~~L~~~l~~~~-----------~~-----~~~~~~i~~~~~~l~~ 523 (724)
.-+..|+....-..+++||... .-+. ++..++.++..|++... .+ +++..++.. ...|+
T Consensus 596 ~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~--s~~Y~ 673 (877)
T KOG2063|consen 596 DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLES--SDLYD 673 (877)
T ss_pred HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhh--hcccC
Confidence 4456666777777788888653 1222 34445555555543210 00 111111111 34455
Q ss_pred hHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH-cCCch-hhHHHHhcC-----ChHHHHHHHHHHHcc
Q 004914 524 ALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD-LMKPY-IFDFIENHN-----LHDAIREKVVQLMLL 596 (724)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~-~~~~~-~~~~i~~~~-----l~~~~~~~~~~L~~~ 596 (724)
++.++... ....|++..++++.+.++|++||.+|+. +.+.+ |..|...+- -++.+...+..++..
T Consensus 674 p~~~L~~~--------~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 674 PQLLLERL--------NGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred cchhhhhc--------cchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 44433322 2245888999988899999999999998 45544 555554321 223333333333332
Q ss_pred ------ChhHHHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHH--H-Hhcchhh
Q 004914 597 ------DCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVEL--Y-ADYDLKM 667 (724)
Q Consensus 597 ------~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~L--y-~~~~~~~ 667 (724)
.+....++|..|.+++++..+++.|... -.-..+..++..++.... ...+++.+++ + |+.-+..
T Consensus 746 ~~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~----~sl~~~~~~l~~~Lr~~~---~~~r~~q~~~~l~q~E~~~~~ 818 (877)
T KOG2063|consen 746 IHDYKSGPLYILNFLQKHADRLDLAQVLKLLPDD----ISLKDLCSFLSKLLRKRF---EALRTTQVQKSLLQAELLPST 818 (877)
T ss_pred hhhccccchhhhhHHHhhhhhcCHHHHHHhCCcc----CcHhHHHHHHHHHHHHHH---HhcchhHHHHHHHHHhhcchH
Confidence 3455667777888999999999999742 112445566666665432 2233333333 3 3433332
Q ss_pred --hHHHhhhcCCCCHHHHHHHHhcC
Q 004914 668 --LLPFLRSSQHYTLEKAYEICVKR 690 (724)
Q Consensus 668 --ll~fL~~~~~y~~~~al~~c~~~ 690 (724)
+.+.=+..--.+-+++-.+|++.
T Consensus 819 ~~l~~~~s~~~~l~~~~~C~~C~k~ 843 (877)
T KOG2063|consen 819 EELNKLRSSKIQLNDESLCSICEKR 843 (877)
T ss_pred HHHHHhhcceEEEchhhHhHHHHhh
Confidence 22221222234677888888763
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0089 Score=64.05 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=74.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Cee-EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMK-AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY 172 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~-~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~ 172 (724)
.|.-+.|+|.-..+|.+..+|.|.+..+...++.++..+. +++ +++|.|+ |+.+++|-.||+|++.+..-.+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~D-----GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPD-----GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCC-----CCEEEEEecCCeEEEEEccCCCc
Confidence 5677899999999999999999999999988888888777 777 9999999 99999999999999988752222
Q ss_pred cceEeccCCCCeEEEEEeCC
Q 004914 173 RDQVLHSGEGPVHVVKWRTS 192 (724)
Q Consensus 173 ~~~~l~~~~~~V~~l~~~~~ 192 (724)
...........|.++.|...
T Consensus 97 l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred eeccccccccchheeecccc
Confidence 22222334567777777733
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.57 E-value=0.00082 Score=71.60 Aligned_cols=186 Identities=13% Similarity=0.165 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCe---eEEEcCCccceeEEEEcCCC-CEEEEEe----CCCCEEEEeccCCce-----EEE
Q 004914 64 ERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDG-EYVGSCS----DDGSVVINSLFTDEK-----MKF 130 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g-~~l~s~~----~Dg~v~iwd~~~~~~-----~~~ 130 (724)
.-.+++|..+|.|-+-...... .....+|..+.++++|++-. ++||.|- .|..+.|||+.++-. ..+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 3478999999999998773221 23346688899999999854 4565553 356799999987521 122
Q ss_pred eC-CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEE---EeCCEEEEEcCCcEEEE
Q 004914 131 DY-HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK---WRTSLIAWANDAGVKVY 205 (724)
Q Consensus 131 ~~-~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~---~~~~~la~~~d~~i~i~ 205 (724)
.. .. ...+++|..+ .+++.+|.....+.+++.+|.......+.. ..+.++. |++.+++..+|+.|.+|
T Consensus 150 s~~~l~gqns~cwlrd-----~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~~~nY~cs~~dg~iAiw 222 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRD-----TKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPFSPNYFCSNSDGDIAIW 222 (783)
T ss_pred ccccccCccccccccC-----cchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCCCCCceeccccCceeec
Confidence 22 22 6678888866 688888988889999988875433332221 2233333 45788888899999999
Q ss_pred Ec-CC-CceEEEecCCCCCCCCCCCCCceee---cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 206 DA-AN-DQRITFIERPRGSPRPELLLPHLVW---QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 206 d~-~~-~~~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
|. +. ..++..+....+... .....++| .+|...+.. ..++|+.+++.....
T Consensus 223 D~~rnienpl~~i~~~~N~~~--~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t 279 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKP--KQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT 279 (783)
T ss_pred cchhhhccHHHHHhhCCCCcc--cceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence 94 22 122222222211110 12445666 334433333 667899999876543
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.52 E-value=0.051 Score=60.78 Aligned_cols=174 Identities=10% Similarity=0.183 Sum_probs=105.2
Q ss_pred cCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCC-CeeEE
Q 004914 63 AERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAI 139 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v 139 (724)
++..++.|+....+..+|+.+... +...-..+.|+-++ .+++.+.+|...|+|.+-|..+ ..+.++..|+ .|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 455666777777777788855443 33333333455444 4588999999999999999998 4556799999 88766
Q ss_pred EeCCCCCCCCCCEEEEecCCC---------eEEEEecccCCccceEeccCCCCeEEEEEeC----CEEEEEcCCcEEEEE
Q 004914 140 SLDPDYTRKMSRRFVAGGLAG---------HLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT----SLIAWANDAGVKVYD 206 (724)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg---------~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~----~~la~~~d~~i~i~d 206 (724)
... |+.++++|..+ -|.+|+.+-. +....+.-+.+| .=+.|.+ .+++++..|...+.|
T Consensus 224 Dv~-------GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 224 DVQ-------GNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred ecc-------CCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 554 56777766433 3566665522 222222223333 2234442 455555788888888
Q ss_pred cCC-Cce-EEE-ecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 207 AAN-DQR-ITF-IERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 207 ~~~-~~~-~~~-i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
..+ +.+ ... ...+.+ ..+..+++ ++++.++.| .+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~-----s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNG-----SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCC-----CcceeEEecCCCceEEEecccCcEeeec
Confidence 431 111 111 111111 12344555 688999999 999999998
No 351
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.48 E-value=0.12 Score=58.23 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=95.0
Q ss_pred HHHHHHHhhhhcc--CcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC------ch----------hhHHHHhcC---Ch
Q 004914 525 LPVISAIEPQLNS--SSMTDALKEALAELYVIDGHYEKAFSLYADLMK------PY----------IFDFIENHN---LH 583 (724)
Q Consensus 525 ~~~~~~~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~------~~----------~~~~i~~~~---l~ 583 (724)
+.+++.+++.+.. ....-.....++.||.++.+|++|+.+++..+. .. -+.++-..+ .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 3444555555542 112223556889999999999999999998654 00 111111111 01
Q ss_pred HH-HHHHHHHHHccChhHHHHHhhh--cCCCCChHHHHHHHhccc---ccCCchhHHHHHHHHHHhcCCCCChhhHHHHH
Q 004914 584 DA-IREKVVQLMLLDCKRAVSLLIQ--NKDLITPSEVVTQLLNAR---DKCDSRYFLHLYLHALFEVNPHAGKDFHDMQV 657 (724)
Q Consensus 584 ~~-~~~~~~~L~~~~~~~~~~ll~~--~~~~~~~~~vi~~l~~~~---~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv 657 (724)
.. +......|+.++..+..+.+.. ....++|++.+..+...+ ...++......||..+.+........+-=.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 10 1233445555554443333332 112234555554443221 11245666678888888776655555555666
Q ss_pred HHHHhcc-hhhhHHHhhhcCCCCHHHHHHHHhcC-CCchhHHHHHhccCChHHHHHHHHH
Q 004914 658 ELYADYD-LKMLLPFLRSSQHYTLEKAYEICVKR-DLLREQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 658 ~Ly~~~~-~~~ll~fL~~~~~y~~~~al~~c~~~-~~~~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
+.|.+.. .+.-+.| .++||.+...+ +-.=-.+=||.+.|++++|+..+=.
T Consensus 457 ~c~~~l~e~e~A~e~--------y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEF--------YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhhHHHHHHH--------HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 6664321 2222222 13333333321 2233345678899999999987643
No 352
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.46 E-value=0.23 Score=54.44 Aligned_cols=253 Identities=17% Similarity=0.236 Sum_probs=139.1
Q ss_pred EeeCCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhh
Q 004914 391 AKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAH 470 (724)
Q Consensus 391 ~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~ 470 (724)
+...+..+-|-++.+-.+|++|+++++.-..+ .+..+.+.|++.|...|+=+.|+++ ..+ +
T Consensus 555 leqn~te~aigmy~~lhkwde~i~lae~~~~p--~~eklk~sy~q~l~dt~qd~ka~el-----k~s------------d 615 (1636)
T KOG3616|consen 555 LEQNATEEAIGMYQELHKWDEAIALAEAKGHP--ALEKLKRSYLQALMDTGQDEKAAEL-----KES------------D 615 (1636)
T ss_pred HhcccHHHHHHHHHHHHhHHHHHHHHHhcCCh--HHHHHHHHHHHHHHhcCchhhhhhh-----ccc------------c
Confidence 34455566777788888888998888754432 3567899999999999999999983 211 1
Q ss_pred cCCCCcccccCcCCCCCCCHHHHHHHHH--HHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHH
Q 004914 471 LRQLPVLVPYMPTENPRLRDTAYEVALV--ALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEAL 548 (724)
Q Consensus 471 ~~~l~~L~~~l~~~~~~l~~~~~~~~L~--~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 548 (724)
.+.+.++.-||....|-. .-..+|+ .++. + +.+++-| -..+ -...+|+-+
T Consensus 616 gd~laaiqlyika~~p~~---a~~~a~n~~~l~~---d-e~il~~i-----------------a~al----ik~elydka 667 (1636)
T KOG3616|consen 616 GDGLAAIQLYIKAGKPAK---AARAALNDEELLA---D-EEILEHI-----------------AAAL----IKGELYDKA 667 (1636)
T ss_pred CccHHHHHHHHHcCCchH---HHHhhcCHHHhhc---c-HHHHHHH-----------------HHHH----HhhHHHHhh
Confidence 233445555555443311 1111111 0011 1 1111111 1111 223488889
Q ss_pred HHHHHhcCCHHHHHHHHHHcCC-chhhHHHHhcCChHHHHH-------HHHHHHccChhHHHHHhhhcCCCCChHHHHHH
Q 004914 549 AELYVIDGHYEKAFSLYADLMK-PYIFDFIENHNLHDAIRE-------KVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQ 620 (724)
Q Consensus 549 ~~ly~~~~~~~~al~~~~~~~~-~~~~~~i~~~~l~~~~~~-------~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~ 620 (724)
..||.+..++++|+.|+-+-.- ..++++. +..+++.|.+ ++...-++ ..+++-+++-. .+++.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaiela-rfafp~evv~lee~wg~hl~~~~q~--daainhfiea~------~~~ka 738 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELA-RFAFPEEVVKLEEAWGDHLEQIGQL--DAAINHFIEAN------CLIKA 738 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHH-HhhCcHHHhhHHHHHhHHHHHHHhH--HHHHHHHHHhh------hHHHH
Confidence 9999999999999999977432 3355442 2333333322 22222222 23566555532 33333
Q ss_pred HhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhhHHHhhhcCCCCHHHHHHHHhcCCCchhHHHHH
Q 004914 621 LLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFIL 700 (724)
Q Consensus 621 l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~ll~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll 700 (724)
.+..-....-++.+ --|+.+-++ .....++.....-|+. .=+.+.|=++..+.+++...+-+|
T Consensus 739 ieaai~akew~kai-~ildniqdq--k~~s~yy~~iadhyan--------------~~dfe~ae~lf~e~~~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAI-SILDNIQDQ--KTASGYYGEIADHYAN--------------KGDFEIAEELFTEADLFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhH-hHHHHhhhh--ccccccchHHHHHhcc--------------chhHHHHHHHHHhcchhHHHHHHH
Confidence 33210000111221 233333222 2233455555555542 124567777788888888888888
Q ss_pred hccCChHHHHHHHHHH
Q 004914 701 GRMGNTKHALAVIINK 716 (724)
Q Consensus 701 ~k~g~~~~Al~l~~~~ 716 (724)
+|.|+|..|.+|..+.
T Consensus 802 ~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hccccHHHHHHHHHHh
Confidence 8888888888887664
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.1 Score=55.18 Aligned_cols=148 Identities=11% Similarity=0.193 Sum_probs=89.6
Q ss_pred cCCCCEE-EEEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCC--CCCCCEEEEecCCCeEEEEecccCCc-cceE
Q 004914 102 DVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYT--RKMSRRFVAGGLAGHLYLNSKKWLGY-RDQV 176 (724)
Q Consensus 102 s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~--~~~~~~l~~g~~dg~v~l~~~~~~~~-~~~~ 176 (724)
..+.++| .++..-..++-.|+..|++. .+..+.-|+-+.+.|++. ......-+.|-++..|.-|+.+..+. +...
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3344544 45555667888899998876 467777777788888743 11123345676777888888875554 2222
Q ss_pred eccCC----CCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEE
Q 004914 177 LHSGE----GPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIK 249 (724)
Q Consensus 177 l~~~~----~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~ 249 (724)
..++. ....|.+-. |.+++++.+|.||+||- .+...++ ..|+.+..+..+.- .+|..+++..+.++-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKT-----AlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKT-----ALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhh-----cccccCCceeeEEeeccCcEEEEecccEEE
Confidence 22221 223333333 56666668999999996 4444332 12222333444444 578888877888888
Q ss_pred EEEEee
Q 004914 250 IASIKT 255 (724)
Q Consensus 250 vw~~~~ 255 (724)
+.++.-
T Consensus 496 Li~t~~ 501 (644)
T KOG2395|consen 496 LIDTLI 501 (644)
T ss_pred EEEEec
Confidence 887753
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.39 E-value=0.25 Score=53.22 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=94.5
Q ss_pred CEEEEEeCCCeEEEEec-CCCeeEEEcCCc--c-----ceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCceE-EEeCC
Q 004914 65 RMIALGTHAGTVHILDF-LGNQVKEFPAHT--A-----AVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKM-KFDYH 133 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~-~~~~~~~~~~h~--~-----~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~ 133 (724)
..+++++.+|.+..+|. +|+.+....... + ....+.-+| .+..+..++.+|.+..+|..+++.. .....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 35667778888888887 555443322110 0 011111122 2556777788999999999987653 22221
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-CCCCeEEEEEe-CCEEEEEcCCcEEEEEcCCCc
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWR-TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~-~~~la~~~d~~i~i~d~~~~~ 211 (724)
. ...+.. . +..++.++.+|.+...+.. ++........ ......+.... +.+++...+|.+..+|..+|+
T Consensus 286 ~-~~~~~~--~-----~~~vy~~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 286 S-VNDFAV--D-----GGRIYLVDQNDRVYALDTR-GGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred C-ccCcEE--E-----CCEEEEEcCCCeEEEEECC-CCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 1 111222 2 3567777788888877654 3332211111 11112223334 455555578999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEE
Q 004914 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASI 253 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~ 253 (724)
.+......... ........++.+++.+.+|.++.++.
T Consensus 357 ~~~~~~~~~~~-----~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 357 FVAQQKVDSSG-----FLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEEcCCCc-----ceeCCEEECCEEEEEeCCceEEEEeC
Confidence 88765543211 11111223555555558888887653
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.38 E-value=1.1 Score=47.32 Aligned_cols=91 Identities=15% Similarity=0.293 Sum_probs=60.9
Q ss_pred EecCCEEEEE---------eCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe
Q 004914 61 AVAERMIALG---------THAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD 131 (724)
Q Consensus 61 s~~~~~la~g---------~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~ 131 (724)
|||++++++. +..+.+.++|+....+..+......+....|+|+|+.++.+. ++.+.+++..++....+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 4677766664 334678899997766666555567888999999999998886 578999998776554432
Q ss_pred CCC-------------------CeeEEEeCCCCCCCCCCEEEEec
Q 004914 132 YHR-------------------PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 132 ~~~-------------------~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
... .-.++-|+|+ ++.|+...
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-----~~~la~~~ 119 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-----SKYLAFLR 119 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TT-----SSEEEEEE
T ss_pred cccceeEEcCccceeccccccccccceEECCC-----CCEEEEEE
Confidence 211 2256789999 77776543
No 356
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.12 Score=53.35 Aligned_cols=192 Identities=14% Similarity=0.117 Sum_probs=117.0
Q ss_pred EEEecCCEEEEEeC-CCeEEEEec-CCCeeEEE--cCCccceeEEEEcCCCC---EE-EEEeCCCCEEEEeccCCc--eE
Q 004914 59 CVAVAERMIALGTH-AGTVHILDF-LGNQVKEF--PAHTAAVNDLSFDVDGE---YV-GSCSDDGSVVINSLFTDE--KM 128 (724)
Q Consensus 59 ~~s~~~~~la~g~~-dg~I~i~d~-~~~~~~~~--~~h~~~V~~l~~s~~g~---~l-~s~~~Dg~v~iwd~~~~~--~~ 128 (724)
+.+.+|..+++++. |..++++|+ +...+..+ ..-.+.+.. +...|. .| ++.-.+|.+.++|-...- ..
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 46678888888776 999999998 33332121 112222321 122231 22 334468999999987633 22
Q ss_pred -EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc----CC-------ccce---EeccCCCCeEEEEEe--
Q 004914 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW----LG-------YRDQ---VLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~----~~-------~~~~---~l~~~~~~V~~l~~~-- 190 (724)
.-..|. ||.++.+.|. +..+++....|.|..|...- .. +... .+....+..+++.|+
T Consensus 138 ~fkklH~sPV~~i~y~qa-----~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQA-----GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred eecccccCceEEEEeecc-----ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 335566 9999999998 79999999999999996531 00 0000 011234556778887
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCC----CCCCCCC-----------------------CCceee-cCCCeEE
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRG----SPRPELL-----------------------LPHLVW-QDDTLLV 241 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~----~~~~~~~-----------------------~~~l~~-~~~~~l~ 241 (724)
|..++.- .|..|+++++.+|+.+..+..... .+..... -+.++| ..++.|+
T Consensus 213 g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll 292 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL 292 (558)
T ss_pred cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE
Confidence 6666655 689999999999987665443210 1111111 223344 3567777
Q ss_pred EEeCCeEEEEEEeeCC
Q 004914 242 IGWGTYIKIASIKTNQ 257 (724)
Q Consensus 242 ~g~d~~i~vw~~~~~~ 257 (724)
-|.-=-|+|.++.++.
T Consensus 293 y~t~~gikvin~~tn~ 308 (558)
T KOG0882|consen 293 YGTILGIKVINLDTNT 308 (558)
T ss_pred eecceeEEEEEeecCe
Confidence 7655557888887764
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.36 E-value=1.2 Score=44.02 Aligned_cols=187 Identities=12% Similarity=0.134 Sum_probs=101.0
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCeeEEEcCC-ccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--Cc-----eE-
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAH-TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DE-----KM- 128 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~-----~~- 128 (724)
.+.|+ +.++|+....+.|..++.+|+.++.+.-. .+-.-+|++..++.++++--.++.+.+.++.. .. ..
T Consensus 28 Ty~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~ 107 (248)
T PF06977_consen 28 TYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQK 107 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEE
T ss_pred EEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceE
Confidence 45665 44778888899999999999887666443 24577888888887777666689999998843 11 11
Q ss_pred -EEeC---CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc--CCccceEe--------ccCCCCeEEEEEe---
Q 004914 129 -KFDY---HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW--LGYRDQVL--------HSGEGPVHVVKWR--- 190 (724)
Q Consensus 129 -~~~~---~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~--~~~~~~~l--------~~~~~~V~~l~~~--- 190 (724)
.+.. +. .+-+++|+|. ++.|+++-...-..++...- ........ ...-.-+.+++++
T Consensus 108 ~~l~~~~~~N~G~EGla~D~~-----~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 108 ISLGFPNKGNKGFEGLAYDPK-----TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EE---S---SS--EEEEEETT-----TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred EecccccCCCcceEEEEEcCC-----CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 1222 22 6899999998 55555555544455554431 11111111 1122346788888
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCC---CCCCCCceee-cCCCeEEEEeCCeEEEE
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR---PELLLPHLVW-QDDTLLVIGWGTYIKIA 251 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~---~~~~~~~l~~-~~~~~l~~g~d~~i~vw 251 (724)
|++++.+ .+..+..+| ..|+.+..+....+..+ .-...-.+++ ++|.+.+++.-+..+++
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5787777 577888899 66777776655432111 0111334666 56667777665555544
No 358
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.34 E-value=0.14 Score=53.76 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=92.0
Q ss_pred EEEecCCEEEEEe-----------CCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEE--eCCCCEEEEeccCC
Q 004914 59 CVAVAERMIALGT-----------HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSC--SDDGSVVINSLFTD 125 (724)
Q Consensus 59 ~~s~~~~~la~g~-----------~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~--~~Dg~v~iwd~~~~ 125 (724)
.|.+.|+++++-. ....+.+++++++.++....-.++|.+.+|.|.++.++++ -.+-.+.++|++++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 3777788665421 1145778888766665555668899999999999876654 47888999999877
Q ss_pred ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC---CeEEEEecccCCccceEeccCCC-CeEEEEEe--CCEEEEE-
Q 004914 126 EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA---GHLYLNSKKWLGYRDQVLHSGEG-PVHVVKWR--TSLIAWA- 197 (724)
Q Consensus 126 ~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d---g~v~l~~~~~~~~~~~~l~~~~~-~V~~l~~~--~~~la~~- 197 (724)
. .+.+.. +=+.+.|+|. +++++.++-| |.+.+|+.. ++ ..+...-.+ ..+-+.|+ ++++-++
T Consensus 309 l--~~~~Pe~~rNT~~fsp~-----~r~il~agF~nl~gni~i~~~~--~r-f~~~~~~~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 309 L--RFYFPEQKRNTIFFSPH-----ERYILFAGFDNLQGNIEIFDPA--GR-FKVAGAFNGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred e--EEecCCcccccccccCc-----ccEEEEecCCccccceEEeccC--Cc-eEEEEEeecCCceEeeccCCceEEEecC
Confidence 3 232223 5566789999 7888886544 668887653 22 222211111 23345677 5665544
Q ss_pred ------cCCcEEEEEcCCCc
Q 004914 198 ------NDAGVKVYDAANDQ 211 (724)
Q Consensus 198 ------~d~~i~i~d~~~~~ 211 (724)
.|..+++||+....
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCcccccCcceEEEEecCch
Confidence 26789999986543
No 359
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.32 E-value=0.24 Score=53.36 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=101.9
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCc--c--------cee-EEEEcCCCCEEEEEeCCCCEEEEeccCCceE-E
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHT--A--------AVN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-K 129 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~--~--------~V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (724)
.+..+.+++.+|.+.-+|. +|+.+....... . .+. .+.. .+..++.++.+|.+..+|..+|+.. +
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 5677888888899999998 677664443211 0 000 0111 3566777888999999999887653 3
Q ss_pred EeCCCCeeE-EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC------CCeEEEEEeCCEEEEEcCCcE
Q 004914 130 FDYHRPMKA-ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE------GPVHVVKWRTSLIAWANDAGV 202 (724)
Q Consensus 130 ~~~~~~v~~-v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~------~~V~~l~~~~~~la~~~d~~i 202 (724)
......+.+ .... +..+++++.+|.+..++.. +|.......... +...-+...+.+++.+.++.+
T Consensus 146 ~~~~~~~~ssP~v~-------~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v 217 (394)
T PRK11138 146 TKVAGEALSRPVVS-------DGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRV 217 (394)
T ss_pred ccCCCceecCCEEE-------CCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEE
Confidence 433332221 1111 2456677778888777664 444332222110 001111122445555578889
Q ss_pred EEEEcCCCceEEEecCCCCCCCCC-----CCCCceeecCCCeEEEEeCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPE-----LLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~-----~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
..+|..+|+.+...+......... .........++..++++.++.+..+|..++.
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999999888765433211100000 0001111235555555688899998887765
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.13 Score=55.30 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=87.3
Q ss_pred EEEecCCEEEEE---eCC-CeEEEEecCCCe---eEEEcCCccceeEEEEcCCCCEEEEE-eCCCC--EEEEeccCCceE
Q 004914 59 CVAVAERMIALG---THA-GTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSC-SDDGS--VVINSLFTDEKM 128 (724)
Q Consensus 59 ~~s~~~~~la~g---~~d-g~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~-~~Dg~--v~iwd~~~~~~~ 128 (724)
+|++++..++.- ... ..+.+++++... +..+.++. ...+|+|||+.|+-+ ..||. |.+.|+.++...
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce
Confidence 478888765543 223 468888984333 33444444 335899999987654 45665 555677776655
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CCc-
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAG- 201 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~~- 201 (724)
.+.... .-+.-.|+|+ |+.++ +.+..|.-.+|..++.+.....+....+.-..-.|+ |+.++..+ +|.
T Consensus 276 ~Lt~~~gi~~~Ps~spd-----G~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 276 RLTNGFGINTSPSWSPD-----GSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred ecccCCccccCccCCCC-----CCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence 554444 3335677777 55554 556677778887777776555444433222255566 67776553 444
Q ss_pred -EEEEEcCCCc
Q 004914 202 -VKVYDAANDQ 211 (724)
Q Consensus 202 -i~i~d~~~~~ 211 (724)
|.+.|+.++.
T Consensus 351 ~i~~~~~~~~~ 361 (425)
T COG0823 351 DIDKNDLASGG 361 (425)
T ss_pred eeEEeccCCCC
Confidence 6666666555
No 361
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.23 E-value=0.93 Score=54.77 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=67.3
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCch-hH-hHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSE-LL-DEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPV 476 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~-~~-~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~ 476 (724)
.+.-|++.|++++|+.+.+.-..+.- .. .-+....+..+...+.+++|..++......+...|..++..+...+.++.
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHH
Confidence 44667788999999999765432110 01 12333445556677889999888776655556677788888877776554
Q ss_pred ccccC---cCCCCCCCHHHHHHHHHHHHcC
Q 004914 477 LVPYM---PTENPRLRDTAYEVALVALATN 503 (724)
Q Consensus 477 L~~~l---~~~~~~l~~~~~~~~L~~~l~~ 503 (724)
-...+ .......+..+|..++..|...
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 33322 2222345678899998888765
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.19 E-value=0.25 Score=41.54 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=64.3
Q ss_pred CEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCeeEEEeCCC
Q 004914 65 RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPD 144 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~ 144 (724)
+-|++||.|..|++|+-. ..+.++..+ +.|++++-... ..++.+..+|+|-+|+-. ....+.+....+.++++..-
T Consensus 16 ~eLlvGs~D~~IRvf~~~-e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlWRiKSK~~~~~~~~~D~ 91 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLWRIKSKNQVTSMAFYDI 91 (111)
T ss_pred ceEEEecCCcEEEEEeCC-cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceeeeeccCCCeEEEEEEcC
Confidence 589999999999999854 344555544 46777765554 679999999999999763 34445554445556555432
Q ss_pred CCCCCCCEEEEecCCCeEE
Q 004914 145 YTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 145 ~~~~~~~~l~~g~~dg~v~ 163 (724)
...+...+++|-.+|.|-
T Consensus 92 -~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 92 -NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCCCceEEEEEecCCeEE
Confidence 112335789998888874
No 363
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.16 E-value=0.12 Score=54.23 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=101.3
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC---------------CEEEE
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG---------------SVVIN 120 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg---------------~v~iw 120 (724)
-.|+||.|.+++.....| |.+|.. .+..+..+. | ..|..+.|+|.+++|.+-+..+ .+.+|
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw 113 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVW 113 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEE
Confidence 348999999998877765 778876 333333433 3 3588899999999999876443 48999
Q ss_pred eccCCceE-EEeCCC-C--ee-EEEeCCCCCCCCCCEEEEecCCCeEEEEecccC--CccceEeccCCCCeEEEEEeCC-
Q 004914 121 SLFTDEKM-KFDYHR-P--MK-AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL--GYRDQVLHSGEGPVHVVKWRTS- 192 (724)
Q Consensus 121 d~~~~~~~-~~~~~~-~--v~-~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~--~~~~~~l~~~~~~V~~l~~~~~- 192 (724)
|+.++.+. .+.... + .+ -+.|+-+ ..+.+-- ....+.+++..-. ......+. ...|....|+|.
T Consensus 114 d~~sg~iv~sf~~~~q~~~~Wp~~k~s~~-----D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~ 185 (561)
T COG5354 114 DIASGMIVFSFNGISQPYLGWPVLKFSID-----DKYVARV-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEG 185 (561)
T ss_pred eccCceeEeeccccCCcccccceeeeeec-----chhhhhh-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCC
Confidence 99998765 344333 3 44 5667666 3443333 2336777764211 11111111 244666677742
Q ss_pred ----EEEEE-----cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE
Q 004914 193 ----LIAWA-----NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI 242 (724)
Q Consensus 193 ----~la~~-----~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~ 242 (724)
+..+. .++.+++|.+..+..+.+...-. ...+.+.| ..+..|++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk------~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK------VSGVQLKWQVLGKYLLV 239 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe------ecccEEEEecCCceEEE
Confidence 44444 25679999998777665422221 12467888 44554443
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.13 E-value=1.1 Score=48.66 Aligned_cols=208 Identities=14% Similarity=0.173 Sum_probs=103.9
Q ss_pred ceeEEEEcCCCCEEEEE-eCCC----CEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCC--------
Q 004914 95 AVNDLSFDVDGEYVGSC-SDDG----SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG-------- 160 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~-~~Dg----~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-------- 160 (724)
.+...+++|+|++++-+ +..| .++++|+.+++...-.... ...+++|.++ ++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d-----~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDD-----GKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTT-----SSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCC-----CCEEEEEEeCcccccccCC
Confidence 44467899999988754 4445 4999999998765433233 2334999999 56655443222
Q ss_pred ---eEEEEecccCCccc-eEeccCCCC--eEEEEEe--CCEEEEE--c--C-CcEEEEEcCCC-----ceEEEecCCCCC
Q 004914 161 ---HLYLNSKKWLGYRD-QVLHSGEGP--VHVVKWR--TSLIAWA--N--D-AGVKVYDAAND-----QRITFIERPRGS 222 (724)
Q Consensus 161 ---~v~l~~~~~~~~~~-~~l~~~~~~--V~~l~~~--~~~la~~--~--d-~~i~i~d~~~~-----~~~~~i~~~~~~ 222 (724)
.|..|..+-..... .++...... ...+..+ +++++.. + + ..+.+.+...+ ......++..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~- 278 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG- 278 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-
Confidence 25555554222222 333443333 3455555 6666543 2 2 34777777664 22222221110
Q ss_pred CCCCCCCCceeecCCCeEEEEeC--CeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEe
Q 004914 223 PRPELLLPHLVWQDDTLLVIGWG--TYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY 300 (724)
Q Consensus 223 ~~~~~~~~~l~~~~~~~l~~g~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~ 300 (724)
....+...++.+++...+ ..-++..+.-.... ......+...-..+..+.++..+++.+++...
T Consensus 279 -----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~---------~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 279 -----VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS---------PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp ------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS---------GGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred -----eEEEEEccCCEEEEeeCCCCCCcEEEEecccccc---------cccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 111122233334443322 12333333221110 00111122222234688999998888876665
Q ss_pred ecCCCCCcccccCCCCcccCCCCCCeEEEeccC-CcccccCcc
Q 004914 301 IPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWN-NDELTTDAL 342 (724)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~-~~~~~~~~~ 342 (724)
. ...++|+++++. +.......+
T Consensus 345 ~--------------------~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 345 E--------------------NGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp E--------------------TTEEEEEEEETT-TEEEEEEES
T ss_pred E--------------------CCccEEEEEECCCCcEEeeecC
Confidence 4 125899999998 644433333
No 365
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.10 E-value=0.4 Score=45.43 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=86.6
Q ss_pred EEEecC-CEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCCCCEEEEEeCCC------CEEEE-eccC---
Q 004914 59 CVAVAE-RMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG------SVVIN-SLFT--- 124 (724)
Q Consensus 59 ~~s~~~-~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg------~v~iw-d~~~--- 124 (724)
++...| +.|.+++..+.|.+|++.+. ....|. --+.|..+..+..|++|+|--.+. .+|+| |++.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 444445 66666688889999998522 234443 337899999999999999964322 45654 2221
Q ss_pred --Cc-----------------------eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc---cceE
Q 004914 125 --DE-----------------------KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY---RDQV 176 (724)
Q Consensus 125 --~~-----------------------~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~---~~~~ 176 (724)
.. +..+...+++.+++-.|- +|+ +++|+. +.+.+|...+... ....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~----tG~-LlVg~~-~~l~lf~l~~~~~~~~~~~~ 174 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV----TGN-LLVGCG-NKLVLFTLKYQTIQSEKFSF 174 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCC----CCC-EEEEcC-CEEEEEEEEEEEEecccccE
Confidence 01 111222236778888887 344 444443 3788886543221 1111
Q ss_pred e--------ccCCCCeEEEEEeCCEEEEEcCCcEEEEEcC
Q 004914 177 L--------HSGEGPVHVVKWRTSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 177 l--------~~~~~~V~~l~~~~~~la~~~d~~i~i~d~~ 208 (724)
+ ....-....+++++.++|..++..++++.+.
T Consensus 175 lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 175 LDFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred EechhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 1 1112336678888999999999999888753
No 366
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=0.0089 Score=66.14 Aligned_cols=158 Identities=10% Similarity=0.079 Sum_probs=99.1
Q ss_pred eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC-C-e
Q 004914 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA-G-H 161 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d-g-~ 161 (724)
.+.|+.|+...+|++|+.+.++|+.|+-.|.|+++++.+|.. -..++|. +|+.+.-+-+ |..+++.+.- . -
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d-----gs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD-----GSTQLTSSSSSSPL 1168 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC-----cceeeeeccccCch
Confidence 566788999999999999999999999999999999999765 4678888 9998887777 5555554432 2 3
Q ss_pred EEEEecccCCccceEeccCCCCeEEEEEeC--CE-EEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCC
Q 004914 162 LYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SL-IAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDT 238 (724)
Q Consensus 162 v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~~-la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 238 (724)
..+|...-.+.....+ ..-.++.|+. .. ++++......+||+.++.++.++-.+. ...........|+...
T Consensus 1169 saLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~--~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT--VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc--hhhhhhccccccCCCc
Confidence 4566543222222111 2245677773 22 233334567999999987766532221 1111112345554333
Q ss_pred eEEEEeCCeEEEEEEeeCC
Q 004914 239 LLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 239 ~l~~g~d~~i~vw~~~~~~ 257 (724)
.|+. +||. +||++..+
T Consensus 1243 ~LIl-ndGv--LWDvR~~~ 1258 (1516)
T KOG1832|consen 1243 TLIL-NDGV--LWDVRIPE 1258 (1516)
T ss_pred ceEe-eCce--eeeeccHH
Confidence 3332 4554 68887653
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.92 E-value=0.37 Score=40.51 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=62.9
Q ss_pred eeEEEEc---CCC-CEEEEEeCCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC
Q 004914 96 VNDLSFD---VDG-EYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (724)
Q Consensus 96 V~~l~~s---~~g-~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (724)
|+++++. .+| +.|+.||.|..|++|+-. ..+..+.....|++++-... ..|+.+..+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~------~~F~Y~l~NGTVGvY~~~--- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG------GRFAYALANGTVGVYDRS--- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC------CEEEEEecCCEEEEEeCc---
Confidence 5566654 344 479999999999999753 22334555558888877766 789999999999999763
Q ss_pred ccceEeccCCCCeEEEEEe---C----CEEEEEcCCcE
Q 004914 172 YRDQVLHSGEGPVHVVKWR---T----SLIAWANDAGV 202 (724)
Q Consensus 172 ~~~~~l~~~~~~V~~l~~~---~----~~la~~~d~~i 202 (724)
.....+++ +..++++.+. + .+|++-++|.|
T Consensus 72 ~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 72 QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 22223333 3336666665 2 34444467765
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.91 E-value=0.23 Score=52.96 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=101.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEec--C--CC--e--------------------------------------eEEEcCCcc
Q 004914 59 CVAVAERMIALGTHAGTVHILDF--L--GN--Q--------------------------------------VKEFPAHTA 94 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~--~--~~--~--------------------------------------~~~~~~h~~ 94 (724)
++++...-+++|...|.|.+|.. + .. . ...++...+
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 45566678899999999988865 1 10 0 011233468
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE---EeC------CC-CeeEEEeCCCCCCC---CCCEEEEecCCCe
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---FDY------HR-PMKAISLDPDYTRK---MSRRFVAGGLAGH 161 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~------~~-~v~~v~~~p~~~~~---~~~~l~~g~~dg~ 161 (724)
+|++++.|. =-+++.|.++|.+.|.|+++..+.. +.. .. .|+++.|..-.-.. .+-.+++|+..|.
T Consensus 88 ~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 88 PVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 899999874 4589999999999999998765532 111 22 68888886321111 1367889999999
Q ss_pred EEEEecccCC------ccceEeccCCCCeEEEE-Ee-----------------------CCEEEEEcCCcEEEEEcCCCc
Q 004914 162 LYLNSKKWLG------YRDQVLHSGEGPVHVVK-WR-----------------------TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 162 v~l~~~~~~~------~~~~~l~~~~~~V~~l~-~~-----------------------~~~la~~~d~~i~i~d~~~~~ 211 (724)
+.+|...-.. ........+.++|..+. ++ +.+++.+++..++++...+.+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 9998653211 11111123456665554 32 136777788999999998777
Q ss_pred eEEEecCCCCCCCCCCCCCceee------cCCCeEEEE-eCCeEEEEEEe
Q 004914 212 RITFIERPRGSPRPELLLPHLVW------QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~------~~~~~l~~g-~d~~i~vw~~~ 254 (724)
......... .....+++ ..+..|++- .+|.|+++.+-
T Consensus 247 ~~~K~~~~~------~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 247 GAHKSFDDP------FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-SS-------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred ccceeeccc------cccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 655432111 01111222 123334333 88899999763
No 369
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.82 E-value=0.044 Score=59.74 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=81.6
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
|...|.--+++..+++++.|+.-|.+.+++-.++.....+. .. .+....++++ ..++|.|+..|.|.++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-----e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-----EYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-----hHhhhhhcCCceEEeehhh
Confidence 44556666778889999999999999999998877665543 33 5666677887 6788899999999988654
Q ss_pred cCCccceEe-----ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 169 WLGYRDQVL-----HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 169 ~~~~~~~~l-----~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
..+.....+ ..|...|++++|+ +.-+..| +.|.|..-.+.+
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 322221111 1267889999999 5667777 567777766665
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.42 Score=51.52 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=98.5
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEe---CC-CCEEEEeccCCceEE-EeCCCCeeEEEeCCCCCCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS---DD-GSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRK 148 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~---~D-g~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~ 148 (724)
+.+.+-|.+|.....+..-...+..-.|+|++..++..+ .. ..+.++++.+++... ......-...+|+|+
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD---- 248 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD---- 248 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC----
Confidence 445555655655555555556777788999998766542 22 358999999866443 333334556789998
Q ss_pred CCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCC----cEEEEEcCCCceEEEecCCCCC
Q 004914 149 MSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDA----GVKVYDAANDQRITFIERPRGS 222 (724)
Q Consensus 149 ~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~----~i~i~d~~~~~~~~~i~~~~~~ 222 (724)
+.+.+++...||...+|..+..+.....+....+.-+.-.|+ |+.|+..+|. .|.+++...+..... ....+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~ 327 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGG 327 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCC
Confidence 345566778889888887665565555455555555566676 7777766443 377777776655332 211111
Q ss_pred CCCCCCCCceee-cCCCeEEEEe--CCe
Q 004914 223 PRPELLLPHLVW-QDDTLLVIGW--GTY 247 (724)
Q Consensus 223 ~~~~~~~~~l~~-~~~~~l~~g~--d~~ 247 (724)
.. .-.| +++..++... +|.
T Consensus 328 -----~~-~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 328 -----NS-NPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred -----Cc-CccCCCCCCEEEEEeccCCc
Confidence 11 3445 5777776663 454
No 371
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=5.2 Score=44.77 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=49.5
Q ss_pred EEEecCCEEEEEeCC----------CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc
Q 004914 59 CVAVAERMIALGTHA----------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~d----------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
.++|.|.-||+.-.+ -.|+||+..|..+..+....+.+-.+.|+.+.. |++...||++.++++....
T Consensus 39 a~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 39 ACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred EecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence 455555555555433 468999999998877666555788899997654 7788899999999997643
No 372
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.46 E-value=1.6 Score=52.48 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=17.0
Q ss_pred CchhHHHHHhccCChHHHHHHHHH
Q 004914 692 LLREQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 692 ~~~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
.+...+.+|.+.|++++|..++-.
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566777888888888877654
No 373
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=2.2 Score=46.30 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHH-HHhhcC-CCCc-ccccCcCCCCCCCHHHHHHHHHHHHcCC
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVF-HFAHLR-QLPV-LVPYMPTENPRLRDTAYEVALVALATNP 504 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~-~F~~~~-~l~~-L~~~l~~~~~~l~~~~~~~~L~~~l~~~ 504 (724)
.+...+++.|+..++|++|...|..+...+.+..++-+. -|+.+. .+.. +..-+| -.++..|+.+.+.-....
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~----~v~e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP----EVPEDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc----CCCcchHHHHHHHHHHHH
Confidence 467778899999999999999999887765555543332 232221 1111 222222 223456777766432110
Q ss_pred ccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcch--------HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 505 SFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMT--------DALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 505 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
...++-+.++.+ ......+++.+...+.. +...-.+++.++..|+-++|.++|...
T Consensus 187 -~~gky~qA~elL-------~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 187 -ENGKYNQAIELL-------EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -hcccHHHHHHHH-------HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 112222222222 22233344444332221 233346888999999999999998873
No 374
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.09 E-value=1.4 Score=46.61 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=76.3
Q ss_pred EeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCC--------CCEEEEEeCCCCEEEEeccC--CceEEEeCCCCeeE
Q 004914 70 GTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD--------GEYVGSCSDDGSVVINSLFT--DEKMKFDYHRPMKA 138 (724)
Q Consensus 70 g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~--------g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~~v~~ 138 (724)
|.....++-.|+ .|..+..+.-|..-| +.+.|. ...|+..|..+ |.--|.+- +++........++-
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccc-eEEecccccCCceeeeeehhcccc
Confidence 333344444555 455566666666543 566664 22344444443 33344433 33333332223333
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcC
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~ 208 (724)
-.|+...+.. +.++++|+..|.|++|++- ..+....+++-...|..+... |.++.+.....+.+.|++
T Consensus 563 n~Fss~~tTe-sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTE-SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccccc-CceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 3344332222 4799999999999999874 223344455556667777766 787777767788888876
No 375
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.04 E-value=2.7 Score=50.38 Aligned_cols=56 Identities=21% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
+..+++.|++++|+.+++........-..+....+.-++..|++++|.+.+.+.+.
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 45677788888888777654321101123444555666677777777777666554
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.01 E-value=5.3 Score=41.57 Aligned_cols=171 Identities=11% Similarity=0.155 Sum_probs=94.0
Q ss_pred CeEEEEec-CCCeeEEEcC-CccceeE---EEEcCC----CCEEEEEeC----------CCCEEEEeccCC-----ceEE
Q 004914 74 GTVHILDF-LGNQVKEFPA-HTAAVND---LSFDVD----GEYVGSCSD----------DGSVVINSLFTD-----EKMK 129 (724)
Q Consensus 74 g~I~i~d~-~~~~~~~~~~-h~~~V~~---l~~s~~----g~~l~s~~~----------Dg~v~iwd~~~~-----~~~~ 129 (724)
+.|++.|. +...+..+.- ....+++ +.+..+ ..+|+.|+. .|.+.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 45788887 4444433322 1223443 344433 356666642 288999999884 3222
Q ss_pred ---EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEE
Q 004914 130 ---FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKV 204 (724)
Q Consensus 130 ---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i 204 (724)
.....+|++++--.+ . ++++. ++.+.+|+..... -...........++++...+++++++ ...++.+
T Consensus 82 i~~~~~~g~V~ai~~~~~------~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNG------R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEETT------E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhhCC------E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence 233348888876533 4 44433 3589998775333 11111222344788888888888888 4677777
Q ss_pred EEcCC-CceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCCeEEEEEEeeC
Q 004914 205 YDAAN-DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 205 ~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+.... +..+..+.... ...++.++.+- ++..++++ .+|.+.++.....
T Consensus 154 ~~~~~~~~~l~~va~d~----~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 154 LRYDEENNKLILVARDY----QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEETTTE-EEEEEEES----S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEEccCCEEEEEEecC----CCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 75443 22233332221 12245556663 55677777 8899999988643
No 377
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.96 E-value=4.2 Score=40.12 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=87.6
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEeccC------CceEEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 99 LSFDVDGEYVGSCSDDGSVVINSLFT------DEKMKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 99 l~~s~~g~~l~s~~~Dg~v~iwd~~~------~~~~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
++.+.+|+.||.. .|..|-|-..+. +++ .+..+. .-+.++|+|+ +..+|.+...|+|++++..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~WSpD-----~tlLa~a~S~G~i~vfdl~-- 73 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAWSPD-----CTLLAYAESTGTIRVFDLM-- 73 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEE-ecCCCCCchheEEEECCC-----CcEEEEEcCCCeEEEEecc--
Confidence 5667888876655 455666665543 222 222222 6678999999 8999999999999999763
Q ss_pred CccceEecc-------CCCCeEEEEEe---------CCEEEEEcCCcEEEEEcCCCc-----eEEEecCCCCCCCCCCCC
Q 004914 171 GYRDQVLHS-------GEGPVHVVKWR---------TSLIAWANDAGVKVYDAANDQ-----RITFIERPRGSPRPELLL 229 (724)
Q Consensus 171 ~~~~~~l~~-------~~~~V~~l~~~---------~~~la~~~d~~i~i~d~~~~~-----~~~~i~~~~~~~~~~~~~ 229 (724)
|.....+.. ....|.++.|. -.+++....|.++-|-+..+. ....+... .....-+
T Consensus 74 g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~---~~yp~Gi 150 (282)
T PF15492_consen 74 GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS---SHYPHGI 150 (282)
T ss_pred cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec---ccCCCce
Confidence 433333322 12456666665 256777778888888764321 11222221 1112236
Q ss_pred Cceee-cCCCeEEEE---eCC---------eEEEEEEeeCC
Q 004914 230 PHLVW-QDDTLLVIG---WGT---------YIKIASIKTNQ 257 (724)
Q Consensus 230 ~~l~~-~~~~~l~~g---~d~---------~i~vw~~~~~~ 257 (724)
.++.+ +..++|++| .+. -+..|.+-.+.
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS 191 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence 67777 444666666 111 26778776554
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.85 E-value=0.091 Score=36.75 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC
Q 004914 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
...|.+++|+|..+.||.|+.+|.|.++.+...
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 356999999999999999999999999998543
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=0.75 Score=45.09 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=99.7
Q ss_pred EEEecCCEEEEEe-----CCCeEEEEecC--CCeeEEEcCCccceeEEEEcCCCCEEEEEeCC-------C---------
Q 004914 59 CVAVAERMIALGT-----HAGTVHILDFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD-------G--------- 115 (724)
Q Consensus 59 ~~s~~~~~la~g~-----~dg~I~i~d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D-------g--------- 115 (724)
+||++|.+|...- ..|.|=|||.. .+.+.++..|.-.-..+.|.+||+.++.+... |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 6888898886543 34889999984 33467788887777889999999988776421 1
Q ss_pred --CEEEEeccCCceE---EEe--CCC-CeeEEEeCCCCCCCCCCEEEEecCCCe-------EEEEecccCCccceEecc-
Q 004914 116 --SVVINSLFTDEKM---KFD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-------LYLNSKKWLGYRDQVLHS- 179 (724)
Q Consensus 116 --~v~iwd~~~~~~~---~~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-------v~l~~~~~~~~~~~~l~~- 179 (724)
++.+.|..++.+. ++. .+. .|..++..++ +...+.+-..|. |-.+. .+.....+.-
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d-----gtvwfgcQy~G~~~d~ppLvg~~~---~g~~l~~~~~p 271 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD-----GTVWFGCQYRGPRNDLPPLVGHFR---KGEPLEFLDLP 271 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCC-----CcEEEEEEeeCCCccCCcceeecc---CCCcCcccCCC
Confidence 2233333333322 122 223 6677777776 333332222121 00000 1122222211
Q ss_pred ------CCCCeEEEEEe--CCEEE-EE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEE
Q 004914 180 ------GEGPVHVVKWR--TSLIA-WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIK 249 (724)
Q Consensus 180 ------~~~~V~~l~~~--~~~la-~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~ 249 (724)
....|-+|+.+ ..+++ ++ ..+...+||..+|..+..-..+. .+.+.-..+...+++.+|.+.
T Consensus 272 ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--------aaGva~~~~gf~vssg~G~~~ 343 (366)
T COG3490 272 EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--------AAGVAAAKGGFAVSSGQGRII 343 (366)
T ss_pred HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--------cccceeccCceEEecCCceEE
Confidence 12446677777 34444 44 45678999999999876533332 223333345556666788887
Q ss_pred EEEE
Q 004914 250 IASI 253 (724)
Q Consensus 250 vw~~ 253 (724)
++.-
T Consensus 344 ~~s~ 347 (366)
T COG3490 344 FYSR 347 (366)
T ss_pred eccc
Confidence 7743
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.79 E-value=0.71 Score=52.03 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=77.3
Q ss_pred EEEecCCEEEEEe------CCC--eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC------------CCEE
Q 004914 59 CVAVAERMIALGT------HAG--TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD------------GSVV 118 (724)
Q Consensus 59 ~~s~~~~~la~g~------~dg--~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D------------g~v~ 118 (724)
.++++|+.+|... .++ .+.+++..+.......+. ..+.-+|+|+|+.+.+.+.. +.+.
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~ 433 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA 433 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEE
Confidence 4888999877665 233 555556544433223333 37888999999987777533 2232
Q ss_pred EEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe--cccCCccceE-----ecc-CCCCeEEEEEe
Q 004914 119 INSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS--KKWLGYRDQV-----LHS-GEGPVHVVKWR 190 (724)
Q Consensus 119 iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~--~~~~~~~~~~-----l~~-~~~~V~~l~~~ 190 (724)
+.++..+.... .....|..+.|+|+ |..++... +|.|.+-- ..-.|. ... +.. -...+.++.|.
T Consensus 434 ~~~vd~ge~~~-~~~g~Issl~wSpD-----G~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 434 RTPVDASAVAS-RVPGPISELQLSRD-----GVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred EEeccCchhhh-ccCCCcCeEEECCC-----CCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEe
Confidence 23443333322 22338999999999 77776655 46776621 111222 111 222 23446788998
Q ss_pred --CCEEEEEcCCcEEEEEcC
Q 004914 191 --TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 191 --~~~la~~~d~~i~i~d~~ 208 (724)
+.+++...++...+|.+.
T Consensus 506 ~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 506 TGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred cCCEEEEEecCCCCceEEEe
Confidence 455544444434445443
No 381
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=0.071 Score=59.09 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=75.1
Q ss_pred EEEcCCCCEEEEEe----CCCCEEEEeccCCceEE-EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc
Q 004914 99 LSFDVDGEYVGSCS----DDGSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR 173 (724)
Q Consensus 99 l~~s~~g~~l~s~~----~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~ 173 (724)
.+|+|...+++.++ ..|.|.||-- +|+..+ +...-.+++++|+|. .-.++.|-.-|.+.+|..+ ....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe-----~~vLa~gwe~g~~~v~~~~-~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPE-----EFVLAQGWEMGVSDVQKTN-TTET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEec-CCCCCcccccceehhhhccChH-----HHHHhhccccceeEEEecC-Ccee
Confidence 57999999888776 3578888743 333322 222225678999998 5677888888999998775 3344
Q ss_pred ceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 174 DQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 174 ~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
-.+...|..+|..+.|+ |..+.++ +-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45556789999999999 7788877 67889999765
No 382
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.69 E-value=4 Score=50.74 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=39.2
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..++++|+|++|+..++.... .+. -.......++-++..|++++|.+.|.+.+..+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 346789999999999775432 111 12244445677888999999999998888643
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.59 E-value=5.3 Score=43.13 Aligned_cols=67 Identities=12% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEE
Q 004914 181 EGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 181 ~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~ 252 (724)
.+++..++.+ |+++|.- .+|.+.+.+..-.+....+.... ...+..+.|..+..++..+.+.+.++.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-----~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-----KSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-----CCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 4689888888 7888877 56788888776555555444331 123567889777777777887887775
No 384
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.39 E-value=8.5 Score=41.12 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=30.7
Q ss_pred HHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 403 LLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
++..|+|++|+...+.... .+. -..+....+..++..|++++|...+...+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 4566778888877665432 111 123445556667777888888775544443
No 385
>PHA02713 hypothetical protein; Provisional
Probab=94.31 E-value=1.4 Score=49.56 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=90.9
Q ss_pred EEecCCEEEEEeCC------CeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCC-----CEEEEeccCCce
Q 004914 60 VAVAERMIALGTHA------GTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFTDEK 127 (724)
Q Consensus 60 ~s~~~~~la~g~~d------g~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~~~~ 127 (724)
...++...++|+.+ ..+..||...+.-..+.. ....-......-+|+..+.||.+| ++..||..++.-
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 44577778888753 346778875443222211 111111111233577778888764 377888877654
Q ss_pred EEEe---CCC-CeeEEEeCCCCCCCCCCEEEEecCCC-----------------------eEEEEecccCCccceEec--
Q 004914 128 MKFD---YHR-PMKAISLDPDYTRKMSRRFVAGGLAG-----------------------HLYLNSKKWLGYRDQVLH-- 178 (724)
Q Consensus 128 ~~~~---~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-----------------------~v~l~~~~~~~~~~~~l~-- 178 (724)
..+. ..+ ....+++ + +...++||.++ .+..|+... .....+.
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~-----g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~~v~~m 450 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--D-----QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWETLPNF 450 (557)
T ss_pred EECCCCCcccccccEEEE--C-----CEEEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEeecCCC
Confidence 3322 222 2222222 2 57778887653 244454321 1111111
Q ss_pred -cCCCCeEEEEEeCCEEEEE-cC------CcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC--
Q 004914 179 -SGEGPVHVVKWRTSLIAWA-ND------AGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT-- 246 (724)
Q Consensus 179 -~~~~~V~~l~~~~~~la~~-~d------~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~-- 246 (724)
........+.+.|.+.+.| .+ ..+..||..+ .+....-+.+. . .....++-.++.+.++| .++
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~-r~~~~~~~~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----R-LSALHTILHDNTIMMLHCYESYM 525 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----c-cccceeEEECCEEEEEeeeccee
Confidence 1112222334446655554 22 2356788887 44332211111 1 11223333577888887 666
Q ss_pred eEEEEEEeeCCCC
Q 004914 247 YIKIASIKTNQSN 259 (724)
Q Consensus 247 ~i~vw~~~~~~~~ 259 (724)
++..||..+++..
T Consensus 526 ~~e~yd~~~~~W~ 538 (557)
T PHA02713 526 LQDTFNVYTYEWN 538 (557)
T ss_pred ehhhcCccccccc
Confidence 6778888776644
No 386
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.10 E-value=0.025 Score=60.75 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=91.3
Q ss_pred cCCEEEEEe----CCCeEEEEecCCCe-----eEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC
Q 004914 63 AERMIALGT----HAGTVHILDFLGNQ-----VKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY 132 (724)
Q Consensus 63 ~~~~la~g~----~dg~I~i~d~~~~~-----~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 132 (724)
|.+.||.|- .+..+.|||+.... -..|.+ -.....+++|..+.+.+++|.....+.++|++.........
T Consensus 114 Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv 193 (783)
T KOG1008|consen 114 DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV 193 (783)
T ss_pred cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh
Confidence 456788773 45678999995431 122322 33456788999888889999999999999998533332223
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-CccceEeccCC----CCeEEEEEe----CCEEEEE-cCCc
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-GYRDQVLHSGE----GPVHVVKWR----TSLIAWA-NDAG 201 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~~~~~~l~~~~----~~V~~l~~~----~~~la~~-~d~~ 201 (724)
.. .+.++.++|- .++++++-. ||.+.+|+.-.. ......+...+ ..+..++|+ |.+.+.. ..++
T Consensus 194 nTk~vqG~tVdp~----~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF----SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hhhhcccceecCC----CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 33 6777888884 156666555 899999983211 22233333223 348899999 3444444 4678
Q ss_pred EEEEEcC
Q 004914 202 VKVYDAA 208 (724)
Q Consensus 202 i~i~d~~ 208 (724)
|+.||+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999986
No 387
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.09 E-value=6.2 Score=38.38 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=67.4
Q ss_pred CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ceEEEeCCCCee-EEE
Q 004914 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHRPMK-AIS 140 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~v~-~v~ 140 (724)
..+++.|+..|.+.-.|. .|+.+.+ .--..+|.+-+.- -|++++.|...|.+++.+..+| +...+..-..|. ...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We-~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE-AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee-hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 457889999999999998 5555422 1122334333322 4788999999999999999997 555554444332 233
Q ss_pred eCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
.+++ +..+.+|+.||+.+..+..
T Consensus 101 ~d~~-----~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 101 CDFD-----GGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred EcCC-----CceEEEecCCCcEEEeccc
Confidence 4566 7899999999998876543
No 388
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.03 E-value=11 Score=44.65 Aligned_cols=89 Identities=10% Similarity=-0.000 Sum_probs=60.3
Q ss_pred eCCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC---hhhHHHHHHHHh
Q 004914 393 PRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFA 469 (724)
Q Consensus 393 ~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~---~~~we~~i~~F~ 469 (724)
+.-+.|.++.+.-.|++++|+.++.........-.......+..+...|++++|.+++.+.+..+ ...|-.....+.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44456788888899999999998876542111123356667778889999999999999877653 334555556666
Q ss_pred hcCCCCcccccC
Q 004914 470 HLRQLPVLVPYM 481 (724)
Q Consensus 470 ~~~~l~~L~~~l 481 (724)
..++...-..++
T Consensus 95 ~~g~~~eA~~~l 106 (765)
T PRK10049 95 DAGQYDEALVKA 106 (765)
T ss_pred HCCCHHHHHHHH
Confidence 666654444433
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=93.87 E-value=0.17 Score=32.32 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=27.7
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
.+..+. .|.++.|+|. +..+++|+.||.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~-----~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPD-----GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCC-----CCEEEEecCCCeEEEcC
Confidence 345556 8999999998 68999999999999874
No 390
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.77 E-value=2.8 Score=46.59 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCEEEEeccC----C-ceE-EEeCCCCeeEEEeCCCCCCCCCCEEEE-ecCCCeEEEEecccCCc-----------cceE
Q 004914 115 GSVVINSLFT----D-EKM-KFDYHRPMKAISLDPDYTRKMSRRFVA-GGLAGHLYLNSKKWLGY-----------RDQV 176 (724)
Q Consensus 115 g~v~iwd~~~----~-~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~-g~~dg~v~l~~~~~~~~-----------~~~~ 176 (724)
++|.+.|..+ + .+. .+...+..+.++++|+ |+++++ +..++++.+.+..-... ....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD-----GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD-----GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCC-----CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 4577777776 2 333 3455558899999999 676655 55678899887542110 0112
Q ss_pred eccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 177 LHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 177 l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
+.-+.+|. ..+|. |...++- -|..|..|++.+
T Consensus 371 vevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 22244554 35677 4433333 699999999875
No 391
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.74 E-value=5.3 Score=44.36 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHHhccchHHHHHhhhhhhhc--------cChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHH
Q 004914 426 LDEVGSRYLDHLIVERKYAEAASLCPKLLR--------GSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVAL 497 (724)
Q Consensus 426 ~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~--------~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L 497 (724)
.-.+-+.|++||-..|+++.|...+.+.-- -...+|-..|......+. .+.....|-.+-
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqd------------qk~~s~yy~~ia 772 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQD------------QKTASGYYGEIA 772 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhh------------hccccccchHHH
Confidence 456778899999999999999876543110 114566666655433222 223344555555
Q ss_pred HHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCch
Q 004914 498 VALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY 572 (724)
Q Consensus 498 ~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~ 572 (724)
.+|.... +.+.-.++... ..+...++..|.+.|+|+.|.+.-.+...++
T Consensus 773 dhyan~~-dfe~ae~lf~e-------------------------~~~~~dai~my~k~~kw~da~kla~e~~~~e 821 (1636)
T KOG3616|consen 773 DHYANKG-DFEIAEELFTE-------------------------ADLFKDAIDMYGKAGKWEDAFKLAEECHGPE 821 (1636)
T ss_pred HHhccch-hHHHHHHHHHh-------------------------cchhHHHHHHHhccccHHHHHHHHHHhcCch
Confidence 5665432 33322222222 1144556667777777777777766655544
No 392
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.56 E-value=2.1 Score=45.38 Aligned_cols=146 Identities=12% Similarity=0.187 Sum_probs=76.3
Q ss_pred cCCCCEEE-EEeCCCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCC--CCCCCEEEEecCCCeEEEEecccCCccceEe
Q 004914 102 DVDGEYVG-SCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYT--RKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL 177 (724)
Q Consensus 102 s~~g~~l~-s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~--~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l 177 (724)
..+.+.|. .|+.-..++-.|+..|++. .+..+..| -|.+.|.+. ......-++|-++..|.-.+.+..|.+..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 34555444 4555556777788777765 46666655 577888632 1112333455555555444555555444433
Q ss_pred ccCCCCeEEEEEe------CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEE
Q 004914 178 HSGEGPVHVVKWR------TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIK 249 (724)
Q Consensus 178 ~~~~~~V~~l~~~------~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~ 249 (724)
.. ...++.-.|+ ..+||.+ ..|.|++||--.......++.- +..+-.+.. .+|..+++....++-
T Consensus 555 es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l------G~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 555 ES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL------GDAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred ee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc------ccceeeeEeecCCcEEEEeecceEE
Confidence 22 2222222222 3455555 6888999995322211122211 112223333 467777766777888
Q ss_pred EEEEee
Q 004914 250 IASIKT 255 (724)
Q Consensus 250 vw~~~~ 255 (724)
+.|++-
T Consensus 628 L~d~~i 633 (776)
T COG5167 628 LTDVPI 633 (776)
T ss_pred EEeccc
Confidence 888753
No 393
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.41 E-value=2.4 Score=45.19 Aligned_cols=150 Identities=16% Similarity=0.180 Sum_probs=78.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeE-EEEecccC--
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHL-YLNSKKWL-- 170 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v-~l~~~~~~-- 170 (724)
.|+.++|+++..-++.|...|.|.+|-....+... .... +-....+.+- --....+.+ -+-++ ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~l~di~~r-~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF---------SLNNSPGKLTDISDR-APPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-----------GGGSS-SEEE-GGG---TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc---------cccCCCcceEEehhh-CCcc
Confidence 58999999998889999999999999876543221 0000 1111111111 000111221 11111 11
Q ss_pred ---C-ccceEeccCCCCeEEEEEe-CCEEEEE-cCCcEEEEEcCCCceEEEecCCC--CCCCCCCCCCceeec------C
Q 004914 171 ---G-YRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAANDQRITFIERPR--GSPRPELLLPHLVWQ------D 236 (724)
Q Consensus 171 ---~-~~~~~l~~~~~~V~~l~~~-~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~--~~~~~~~~~~~l~~~------~ 236 (724)
| .....++...++|++++.+ =-++|.+ .+|.+.|.|++....+..-.... .......++.++.|. +
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 1 2234455568999999998 3678877 68999999998887776522221 122223345556662 2
Q ss_pred C---CeEEEE-eCCeEEEEEEee
Q 004914 237 D---TLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 237 ~---~~l~~g-~d~~i~vw~~~~ 255 (724)
+ -.+++| ..|.+.+|.+..
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEec
Confidence 2 467777 789999999964
No 394
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.39 E-value=8.8 Score=44.11 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 541 TDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 541 ~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
....+..+..+|...|++++|+.++-+.
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3345667777888899999999888763
No 395
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=93.29 E-value=0.15 Score=48.44 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=55.2
Q ss_pred CCChhhHHHHHHHHHhcchh-hhHHHhhh--cCCCCHHHHHHHHhcCCCchhHHHHHhcc-CChHHHHHHHHHHhCC
Q 004914 647 HAGKDFHDMQVELYADYDLK-MLLPFLRS--SQHYTLEKAYEICVKRDLLREQVFILGRM-GNTKHALAVIINKLGD 719 (724)
Q Consensus 647 ~~~~~~~~~lv~Ly~~~~~~-~ll~fL~~--~~~y~~~~al~~c~~~~~~~e~v~Ll~k~-g~~~~Al~l~~~~l~d 719 (724)
..++.+...+++.|++..+. .+-+.+-. -...|++.++++|++++++++.+|++.|. |+|--=|.-++..+..
T Consensus 19 ~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~~i~~ 95 (196)
T PF12816_consen 19 SLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLELIRS 95 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHHHHHH
Confidence 46778889999999765543 33333333 25689999999999999999999999665 9988777776665544
No 396
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.28 E-value=1.4 Score=42.42 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=78.5
Q ss_pred HHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVL 477 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L 477 (724)
.-++++|+|.+|+...+.... .+....+..-..+..++..|+|+.|...+..++..-+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~------------------ 74 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN------------------ 74 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------
Confidence 557899999999988764321 22334556667788899999999999876666653111
Q ss_pred cccCcCCCCCCCHHHHHHHHHHHHcC------C-------ccHHHHHHHhhcCCCCccChH--HHHHHHhhhhccCcchH
Q 004914 478 VPYMPTENPRLRDTAYEVALVALATN------P-------SFHKYLLSTVKSWPPVIYSAL--PVISAIEPQLNSSSMTD 542 (724)
Q Consensus 478 ~~~l~~~~~~l~~~~~~~~L~~~l~~------~-------~~~~~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 542 (724)
++..+...|-..+.++-.. . .-...|.++|++.|..-|-.+ ..+..+++++ +
T Consensus 75 -------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l------a 141 (203)
T PF13525_consen 75 -------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL------A 141 (203)
T ss_dssp --------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH------H
T ss_pred -------CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH------H
Confidence 1223334444433333110 0 013467888889987766533 3334444544 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 004914 543 ALKEALAELYVIDGHYEKAFSLY 565 (724)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~ 565 (724)
...-.++.+|.+.|.|..|+.-+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHH
Confidence 33345778999999999998753
No 397
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.25 E-value=10 Score=43.93 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=44.8
Q ss_pred eeCCchhhHHHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChh
Q 004914 392 KPRDAEDHIAWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (724)
Q Consensus 392 ~~~~~~d~i~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~ 459 (724)
..-++.+.+.-++..|++..|+.+++.. +.+.+.+...+ -.++..|++++|.+.+.+.+..++.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~----~~~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWV----ISPLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHh----hhHhhcCCHHHHHHHHHHHHHhCCC
Confidence 3455667778889999999999997654 33333333333 3345699999999998888875544
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.18 E-value=3.3 Score=46.78 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=82.1
Q ss_pred cceeEEEEcCCCCEEEEEe------CCCCEEEEecc-CCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCe-EEEE
Q 004914 94 AAVNDLSFDVDGEYVGSCS------DDGSVVINSLF-TDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGH-LYLN 165 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~------~Dg~v~iwd~~-~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~ 165 (724)
..+.+.+++|+|+.++... .|+.-.+|-.. .+....+......+...|+|+ |+.+.+...... +++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD-----G~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD-----ADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC-----CCceEEEecCcceEEEe
Confidence 4678889999999887665 24444455332 233333333335788899998 676666543322 2221
Q ss_pred ecccCCccceE--ec------cCCCCeEEEEEe--CCEEEEEcCCcEEE---EEcCCCceEEEecCCCC-CCCCCCCCCc
Q 004914 166 SKKWLGYRDQV--LH------SGEGPVHVVKWR--TSLIAWANDAGVKV---YDAANDQRITFIERPRG-SPRPELLLPH 231 (724)
Q Consensus 166 ~~~~~~~~~~~--l~------~~~~~V~~l~~~--~~~la~~~d~~i~i---~d~~~~~~~~~i~~~~~-~~~~~~~~~~ 231 (724)
... ....... +. ...+.|..+.|+ |..++...++.|.+ -....|. ..+..+.. ..........
T Consensus 425 ~~~-~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDP-ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccC-CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCcccc
Confidence 111 0011110 00 235679999999 77777665676666 3333443 22211110 1111122467
Q ss_pred eeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 232 LVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 232 l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.|.++..|+++ .++...+|.+.-..
T Consensus 502 l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 502 LDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred ceEecCCEEEEEecCCCCceEEEecCC
Confidence 889555556666 54445566665443
No 399
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.09 E-value=0.12 Score=39.47 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=42.0
Q ss_pred HHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChh
Q 004914 403 LLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~ 459 (724)
|++.|+|++|+.+.+......-.-.++...++.-++..|+|++|.+.+.+++...++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 678999999999987543210012357778999999999999999988887775444
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.90 E-value=6 Score=34.57 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=73.1
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEeccC---------CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 99 LSFDVDGEYVGSCSDDGSVVINSLFT---------DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 99 l~~s~~g~~l~s~~~Dg~v~iwd~~~---------~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
-.|+.....|++++.-|+|.|.+... ..+..++..+.|++++-.|--...+...|+.|+.. .+..|+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~- 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE- 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc-
Confidence 45666666788888899999998764 23456777777888765542112235678888765 66677764
Q ss_pred CCccceEeccCCCCeEEEEEe------CCEEEEEcCCcEEEEEcCCCceEEE
Q 004914 170 LGYRDQVLHSGEGPVHVVKWR------TSLIAWANDAGVKVYDAANDQRITF 215 (724)
Q Consensus 170 ~~~~~~~l~~~~~~V~~l~~~------~~~la~~~d~~i~i~d~~~~~~~~~ 215 (724)
.......+.-...|.++.+- ..++.++.+..|.-||....+...+
T Consensus 82 -~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 -NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred -cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 22223334445667777764 3677777777888888765554443
No 401
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.89 E-value=1.3 Score=46.21 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCceEEEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCcc--ceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceE
Q 004914 54 NDAASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTA--AVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKM 128 (724)
Q Consensus 54 ~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~--~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~ 128 (724)
.++++++++-++.+++|. ++.|.+|++.... +.....+.. .|+++. ..+++++.|..-..+.++..+. ....
T Consensus 88 ~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp SS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred cCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEE
Confidence 366888877666665554 4789999994443 333222322 455544 4477999999888888875554 3333
Q ss_pred EE--eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 129 KF--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 129 ~~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
.+ .... .++++.+-++ ++.+++++.+|.+.++...
T Consensus 165 ~va~d~~~~~v~~~~~l~d-----~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVD-----EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEESS-BEEEEEEEE-S-----SSEEEEEETTSEEEEEEE-
T ss_pred EEEecCCCccEEEEEEecC-----CcEEEEEcCCCeEEEEEEC
Confidence 33 2333 7889999877 4699999999999987653
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.89 E-value=4.7 Score=43.93 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=97.4
Q ss_pred cceeEEEEcCCCCEE-EEEe--CCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 94 AAVNDLSFDVDGEYV-GSCS--DDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l-~s~~--~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
.+|.+++|. ||+.+ +|.- .+|.++.-|. ..+..-.-|.++.|.|-.......++|+ .....|.+|.....
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-----~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-----KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc-----cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccC
Confidence 378899997 55543 3432 3444443332 2222223789999999744433344444 45568999976432
Q ss_pred C-ccceEecc------CCCC--eEEEEEeC--CEEEEEcCCcE-EEEEcCC-CceEE-EecCCCCCCCCCCCCCceee-c
Q 004914 171 G-YRDQVLHS------GEGP--VHVVKWRT--SLIAWANDAGV-KVYDAAN-DQRIT-FIERPRGSPRPELLLPHLVW-Q 235 (724)
Q Consensus 171 ~-~~~~~l~~------~~~~--V~~l~~~~--~~la~~~d~~i-~i~d~~~-~~~~~-~i~~~~~~~~~~~~~~~l~~-~ 235 (724)
. ...+.+.. ..-| -.+..|++ .++++-+...+ .+++++. +..++ .+. ....+.|.+| .
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-------~~G~IhCACWT~ 165 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-------TSGLIHCACWTK 165 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-------CCceEEEEEecC
Confidence 2 11111111 0111 23567884 45555443333 3455552 22222 222 2235788999 8
Q ss_pred CCCeEEEEeCCe--EEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecC-CceEEEEee
Q 004914 236 DDTLLVIGWGTY--IKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYI 301 (724)
Q Consensus 236 ~~~~l~~g~d~~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~-~~l~~l~~~ 301 (724)
+|+.|+++-+.. -++||-...... ....--+|..+..||.|.... .++++.+-.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qKtL~------------~CsfcPVFdv~~~Icsi~AT~dsqVAvaTEL 222 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQKTLH------------RCSFCPVFDVGGYICSIEATVDSQVAVATEL 222 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchhhhh------------hCCcceeecCCCceEEEEEeccceEEEEecC
Confidence 999999996666 467764332111 112234577788888888877 444544433
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.75 E-value=0.3 Score=34.18 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=27.5
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
+|.+++|+|. ...+|.|+.+|.|.++..+|
T Consensus 13 ~v~~~~w~P~-----mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPT-----MDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCC-----CCEEEEEECCCeEEEEECCC
Confidence 7999999999 79999999999999988765
No 404
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.58 E-value=17 Score=39.06 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=89.5
Q ss_pred hccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCc-----hhhH------H---HH---hcC----------------
Q 004914 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKP-----YIFD------F---IE---NHN---------------- 581 (724)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~-----~~~~------~---i~---~~~---------------- 581 (724)
......+......+..+|.+.|+|+.|+.++-++... +..+ + +. +..
T Consensus 180 ~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~ 259 (398)
T PRK10747 180 LEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT 259 (398)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 3444566678888899999999999999777665431 1111 0 11 000
Q ss_pred --ChHHHHHHHHHHHccC-hhHHHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 004914 582 --LHDAIREKVVQLMLLD-CKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVE 658 (724)
Q Consensus 582 --l~~~~~~~~~~L~~~~-~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~ 658 (724)
..+....++..++... .+++..++.+.-..-+-..++..+..... +.+.-....++.+....| .+...+-.+-.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~--~~~~~al~~~e~~lk~~P-~~~~l~l~lgr 336 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKT--NNPEQLEKVLRQQIKQHG-DTPLLWSTLGQ 336 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccC--CChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 1111222233333332 34455554432111111122222221111 233344577777777766 35567777777
Q ss_pred HHHh-cchhhhHHHhhhcCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHh
Q 004914 659 LYAD-YDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKL 717 (724)
Q Consensus 659 Ly~~-~~~~~ll~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l 717 (724)
++.. .+.++-..+++.. +++-+...-+-..+-++.++|++++|..++-.-|
T Consensus 337 l~~~~~~~~~A~~~le~a--------l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAA--------LKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7653 3344555555443 2222222223457788999999999988876654
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.48 E-value=7.3 Score=44.48 Aligned_cols=296 Identities=13% Similarity=0.136 Sum_probs=127.8
Q ss_pred eeCCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccch-------HHHHHhhhhhhhccCh--hhHH
Q 004914 392 KPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERK-------YAEAASLCPKLLRGSA--SAWE 462 (724)
Q Consensus 392 ~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~Aa~~~~~~~~~~~--~~we 462 (724)
...+..-.|-+++--|.+++|++++............-...|+.......+ =+.....|...+.... ++|.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 444455688899999999999999954433222233344555555544322 1122233333444333 7888
Q ss_pred HHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHH--HHHHcCCc----------cHHHHHHHhhcCCCCccChHHHHHH
Q 004914 463 RWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVAL--VALATNPS----------FHKYLLSTVKSWPPVIYSALPVISA 530 (724)
Q Consensus 463 ~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L--~~~l~~~~----------~~~~~~~~i~~~~~~l~~~~~~~~~ 530 (724)
..+++.+..-.+ -...+| .+...+-+=+= ..++.... ..+.|.+.|.+..+.-|+
T Consensus 190 ~AvY~ilg~cD~--~~~~~~----~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~------- 256 (613)
T PF04097_consen 190 RAVYKILGRCDL--SRRHLP----EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFN------- 256 (613)
T ss_dssp HHHHHHHHT--C--CC-S-T----TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCT-------
T ss_pred HHHHHHHhcCCc--cccchH----HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcc-------
Confidence 888888843322 222222 11111111110 01111100 012233333333322222
Q ss_pred HhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--chhhHH---HHhcCChHHHHHHHHHHHccChhHHHHHh
Q 004914 531 IEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK--PYIFDF---IENHNLHDAIREKVVQLMLLDCKRAVSLL 605 (724)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~--~~~~~~---i~~~~l~~~~~~~~~~L~~~~~~~~~~ll 605 (724)
...++.+|- .+....|+||.|+.++-+... .++.-+ +..++++..-......|+..++..-
T Consensus 257 -------~~~~p~~Yf---~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~---- 322 (613)
T PF04097_consen 257 -------AGSNPLLYF---QVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDP---- 322 (613)
T ss_dssp -------T------HH---HHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------
T ss_pred -------cchhHHHHH---HHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCC----
Confidence 111222221 223457899999988887322 222221 1233333322222222332222210
Q ss_pred hhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcc--------------------
Q 004914 606 IQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEV-NPHAGKDFHDMQVELYADYD-------------------- 664 (724)
Q Consensus 606 ~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~-~~~~~~~~~~~lv~Ly~~~~-------------------- 664 (724)
..++...+|.++-+.-.. ..+.....|+-.+-.. ++....-+|..+-+|-.+-.
T Consensus 323 ----~~ln~arLI~~Y~~~F~~-td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i 397 (613)
T PF04097_consen 323 ----PPLNFARLIGQYTRSFEI-TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLI 397 (613)
T ss_dssp --------HHHHHHHHHHTTTT-T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HH
T ss_pred ----CCcCHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcccccee
Confidence 124555666555442211 2344444666554322 23333457777777753210
Q ss_pred --hhhhHHHhhhcCC--CCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCC
Q 004914 665 --LKMLLPFLRSSQH--YTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGD 719 (724)
Q Consensus 665 --~~~ll~fL~~~~~--y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d 719 (724)
+.+|+.|-..... ==++.|-+-|++.+.++..+.||-..|+++.|+.|+-..|.+
T Consensus 398 ~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 398 ERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQ 456 (613)
T ss_dssp HHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred eccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1123223211110 015667778999999999999999999999999999887754
No 406
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.41 E-value=16 Score=42.09 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=27.8
Q ss_pred HHHHHHhccchHHHHHhhhhhhhccC---hhhHHHHHHHHhhcC
Q 004914 432 RYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAHLR 472 (724)
Q Consensus 432 ~~~~~l~~~~~~~~Aa~~~~~~~~~~---~~~we~~i~~F~~~~ 472 (724)
..+.+||..|++++|..+|.+++..+ ..+|...-..+.+.+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG 187 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG 187 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc
Confidence 45677888888888888888888644 335555555555544
No 407
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.27 E-value=8.6 Score=38.10 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhH--HHHHHHHhhcC-C
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAW--ERWVFHFAHLR-Q 473 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~w--e~~i~~F~~~~-~ 473 (724)
..-++++|+|++|+...+.... .+.......-..+..++..++|++|...+.+++...+... +++.+.-..+. .
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 4668889999999998765422 2223334445667778999999999988777776432211 12222211111 0
Q ss_pred --CCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHH--HHHHhhhhccCcchHHHHHHHH
Q 004914 474 --LPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPV--ISAIEPQLNSSSMTDALKEALA 549 (724)
Q Consensus 474 --l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 549 (724)
...+.+|.+......+....... ...|.++|+..|..-|-.++- +..+++++ +...-..+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A----------~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------a~~e~~ia 182 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAA----------FRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------AKYELSVA 182 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHH----------HHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 01123333333222222221211 245777888888776664432 24444544 22333677
Q ss_pred HHHHhcCCHHHHHH
Q 004914 550 ELYVIDGHYEKAFS 563 (724)
Q Consensus 550 ~ly~~~~~~~~al~ 563 (724)
.+|.+.|.|..|+.
T Consensus 183 ~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 183 EYYTKRGAYVAVVN 196 (243)
T ss_pred HHHHHcCchHHHHH
Confidence 78999999988775
No 408
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.19 E-value=16 Score=37.64 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=75.1
Q ss_pred cceeEEEEcCCCCEEEEEeC-----C----CCEEEEecc-CCceEEEeCC-C-CeeEEEeCCCCCCCCCCEEEEecCC-C
Q 004914 94 AAVNDLSFDVDGEYVGSCSD-----D----GSVVINSLF-TDEKMKFDYH-R-PMKAISLDPDYTRKMSRRFVAGGLA-G 160 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~-----D----g~v~iwd~~-~~~~~~~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~~d-g 160 (724)
..-+++.+.|+|.+.++... . ..=.+|-+. .+...++... - .-++++|||+ ++.+...... +
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpD-----g~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPD-----GKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCC-----CCEEEEEeCCCC
Confidence 35678889999997776544 0 111344444 3444444333 3 7789999999 6666666543 5
Q ss_pred eEEEEecc-cCC---ccc-eEe-ccCCCCeEEEEEe--CCEEEEE-cCC-cEEEEEcCCCceEEEecCCCCCCCCCCCCC
Q 004914 161 HLYLNSKK-WLG---YRD-QVL-HSGEGPVHVVKWR--TSLIAWA-NDA-GVKVYDAANDQRITFIERPRGSPRPELLLP 230 (724)
Q Consensus 161 ~v~l~~~~-~~~---~~~-~~l-~~~~~~V~~l~~~--~~~la~~-~d~-~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~ 230 (724)
.+.-+... ..+ ... ... ....+..-+++.. |.+-+++ .++ .|.+|+.. |+.+..+..|.. .++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~------~~t 258 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK------RPT 258 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC------CCc
Confidence 55554332 112 111 111 1234445556665 6666555 443 89999988 888888877742 355
Q ss_pred ceee
Q 004914 231 HLVW 234 (724)
Q Consensus 231 ~l~~ 234 (724)
+++|
T Consensus 259 ~~~F 262 (307)
T COG3386 259 NPAF 262 (307)
T ss_pred cceE
Confidence 6666
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=7 Score=45.82 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=83.6
Q ss_pred ceeEEEEcCCCCEEE--EEeCCCCEEEEeccCCc------eE-----EEeCCC--CeeEEEeCCCCCCCCCCEEEEecCC
Q 004914 95 AVNDLSFDVDGEYVG--SCSDDGSVVINSLFTDE------KM-----KFDYHR--PMKAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~--s~~~Dg~v~iwd~~~~~------~~-----~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
+|..+...+|++..+ ..+.+-.|..+|+.+-. .. ...... ...++.|.|.+ ....++...|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v----p~n~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV----PLNSAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc----cchhhhhccc
Confidence 566667777876543 34444478889987511 01 111122 55688899985 4567788888
Q ss_pred CeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecC
Q 004914 160 GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD 236 (724)
Q Consensus 160 g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 236 (724)
+.+.+............ ......+++++|+ |.-++.+ +.|++.-|-. +.+....++.+.... ...+.+++|..
T Consensus 178 lsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred cchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCC--CcceeEEEEec
Confidence 88887544321111111 1234557899999 6666666 7888888865 345555566554332 35678899954
Q ss_pred CCeEEE
Q 004914 237 DTLLVI 242 (724)
Q Consensus 237 ~~~l~~ 242 (724)
.+.+++
T Consensus 254 t~eflv 259 (1405)
T KOG3630|consen 254 TQEFLV 259 (1405)
T ss_pred ceeEEE
Confidence 443333
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.87 E-value=7.5 Score=39.26 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=85.4
Q ss_pred cCCCCEEEEEeCCCCEEEEeccC-CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--E--
Q 004914 102 DVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--V-- 176 (724)
Q Consensus 102 s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~-- 176 (724)
...++.|+.|..+| +.+++... ..........+|..+...|++ +.+++-+ ||.+.+++......... .
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~-----~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL-----NLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc-----CEEEEEc-CCccEEEEchhhcccccccccc
Confidence 44678899999998 89999833 333333333369999999983 4444433 48999987543221110 0
Q ss_pred ---------eccCCCCeEEEEEe-----CCEEEEEcCCcEEEEEcCCC-----ceEEEecCCCCCCCCCCCCCceeecCC
Q 004914 177 ---------LHSGEGPVHVVKWR-----TSLIAWANDAGVKVYDAAND-----QRITFIERPRGSPRPELLLPHLVWQDD 237 (724)
Q Consensus 177 ---------l~~~~~~V~~l~~~-----~~~la~~~d~~i~i~d~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~~~~ 237 (724)
.......+...+-. +..++++....|.+|..... +....+..+. .+..++|. +
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~-------~~~~i~~~-~ 148 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD-------PPSSIAFL-G 148 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------CcEEEEEe-C
Confidence 00112233333311 35677777778888887653 3444444442 35567776 6
Q ss_pred CeEEEEeCCeEEEEEEeeCCC
Q 004914 238 TLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 238 ~~l~~g~d~~i~vw~~~~~~~ 258 (724)
..+++|..+...+.|+.++..
T Consensus 149 ~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 149 NKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred CEEEEEeCCceEEEecCCCCc
Confidence 677888777788899986543
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.85 E-value=4.7 Score=41.20 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=68.7
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc-CCceEE---Ee--CC
Q 004914 61 AVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF-TDEKMK---FD--YH 133 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~~~~~~---~~--~~ 133 (724)
+++|++++++.......-|+.-... ...-+.-..+|.+|.|+|++...+.+ ..|.|+.=+.. ...... .. ..
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence 4577777777665555567753222 22233456789999999998876644 88888877722 121111 11 22
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec---cCCCCeEEEEEe--CCEEEEEcCCcEEEE
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH---SGEGPVHVVKWR--TSLIAWANDAGVKVY 205 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~---~~~~~V~~l~~~--~~~la~~~d~~i~i~ 205 (724)
. .+..++|.++ +...++|+. |.+.+-.. .|+.-+... .-.+....+.|. .+-++.+.+|.+--|
T Consensus 232 ~~~~ld~a~~~~-----~~~wa~gg~-G~l~~S~D--gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 232 GYGILDLAYRPP-----NEIWAVGGS-GTLLVSTD--GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -S-EEEEEESSS-----S-EEEEEST-T-EEEESS--TTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ceeeEEEEecCC-----CCEEEEeCC-ccEEEeCC--CCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 2 6889999988 566666655 55544221 233333322 224457788887 366777778776544
No 412
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.74 E-value=9.9 Score=42.93 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=91.2
Q ss_pred EEEecCCEEEEEeCC-C-----eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCCC-----EEEEeccC
Q 004914 59 CVAVAERMIALGTHA-G-----TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDGS-----VVINSLFT 124 (724)
Q Consensus 59 ~~s~~~~~la~g~~d-g-----~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg~-----v~iwd~~~ 124 (724)
....++...++|+.+ | ++..||...+.-..+.. ........ .-+|...|.||.||. |-.||..+
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCC
Confidence 455577888999988 3 46677774443222211 11111111 235888899999975 66778777
Q ss_pred CceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeE------EEEecccCCccceEec---cCCCCeEEEEEeCCEE
Q 004914 125 DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHL------YLNSKKWLGYRDQVLH---SGEGPVHVVKWRTSLI 194 (724)
Q Consensus 125 ~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v------~l~~~~~~~~~~~~l~---~~~~~V~~l~~~~~~l 194 (724)
.+........ +..+.+...- ++...++||.+|.- ..|+.. ......+. ...........++.+.
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g~a~~~~~iY 479 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVECYDPE--TNTWTLIAPMNTRRSGFGVAVLNGKIY 479 (571)
T ss_pred CcccccCCCCcceeeeEEEEE----CCEEEEEcCcCCCccccceEEEEcCC--CCceeecCCcccccccceEEEECCEEE
Confidence 5543332221 2222221111 25788888876654 333332 11111111 1122222334446666
Q ss_pred EEE-cCC-----cEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCe-----EEEEEEeeCC
Q 004914 195 AWA-NDA-----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY-----IKIASIKTNQ 257 (724)
Q Consensus 195 a~~-~d~-----~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~-----i~vw~~~~~~ 257 (724)
+.| .|+ +|-.||..+.+....-... .......++-.++...++| +++. |..||..++.
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-----~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWTMVAPMT-----SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EECCccCCCccceEEEEcCCCCceeEcccCc-----cccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 655 343 2777888876654431111 1111222233466667777 5543 5666555443
No 413
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.69 E-value=27 Score=39.41 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=92.6
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE---EEeCCC---CeeEEEeCCCCC-CCCCCEEEEecC-C-Ce--
Q 004914 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDYHR---PMKAISLDPDYT-RKMSRRFVAGGL-A-GH-- 161 (724)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~~~---~v~~v~~~p~~~-~~~~~~l~~g~~-d-g~-- 161 (724)
.+.|.++.|.++++.++....+|.|.+||...+... ...... -+.+ .|-+++. ..+..++++-+. . ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 567889999999999999999999999999332211 111111 2222 4444433 112344444333 2 22
Q ss_pred EEEEecccCCccceEecc---CCCCeEE--EEEe-CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec
Q 004914 162 LYLNSKKWLGYRDQVLHS---GEGPVHV--VKWR-TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ 235 (724)
Q Consensus 162 v~l~~~~~~~~~~~~l~~---~~~~V~~--l~~~-~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 235 (724)
.+++...........+.. +...... .++. |.+... .++.|.+|++..-+...++..+...........++.-.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 444444222333333321 1111222 3333 554444 77899999998877777777663222111122334445
Q ss_pred CCCeEEEEeCCeEEEEEEeeCC
Q 004914 236 DDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 236 ~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
...+++.+.++.|++.|+.-..
T Consensus 287 s~nRvLLs~~nkIyLld~~~~s 308 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFES 308 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhh
Confidence 7788888999999999997543
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=5.4 Score=42.66 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEe
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINS 121 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (724)
.|..+..++.|..++-.|.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 466778899999999999999887654
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.60 E-value=2.9 Score=46.92 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=66.1
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCee---EEEcCCccceeEEEEc--CCCCEEEEEeCCCCEEEEecc-----C-Cc---
Q 004914 61 AVAERMIALGTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFD--VDGEYVGSCSDDGSVVINSLF-----T-DE--- 126 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s--~~g~~l~s~~~Dg~v~iwd~~-----~-~~--- 126 (724)
|.-++.-++.+....+.|||..+... ..+ ...+.|.++.|. |+|+.+++.|..+.|.++.-. . +.
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33455555555667899999965543 222 456789999985 688999999999999998542 1 11
Q ss_pred -eEE--EeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec
Q 004914 127 -KMK--FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (724)
Q Consensus 127 -~~~--~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (724)
+.. +..++ +|....|.++ | .+++|+. ..+.++++
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~-----G-~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKD-----G-TLVVGSG-NQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecC-----C-eEEEEeC-CEEEEECC
Confidence 222 23333 8999999998 4 4555443 37777765
No 416
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.44 E-value=21 Score=44.45 Aligned_cols=154 Identities=10% Similarity=0.063 Sum_probs=81.6
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHH---------
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFH--------- 467 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~--------- 467 (724)
+++.....+++++.|.+..++... .+.. .++....+..++..|++++|.+.+.+.....+...+.+...
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence 444555567778888877765433 1111 34667777788899999999998888877554433322111
Q ss_pred ----------HhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcC-CccHHHHHHHhhcCCCCccChHHHHHHHhhhhc
Q 004914 468 ----------FAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATN-PSFHKYLLSTVKSWPPVIYSALPVISAIEPQLN 536 (724)
Q Consensus 468 ----------F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~-~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 536 (724)
+...++.+.=.. .|+ .++.. +++...-.......-...=+.+..+..++..+.
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~------------~~~----~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALA------------SYD----KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHH------------HHH----HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 111121111111 111 11111 111110000000000000122345555555555
Q ss_pred cCcchHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 537 SSSMTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 537 ~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
...........++.+|...|++++|+.++-++
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55556667889999999999999999998875
No 417
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.38 E-value=24 Score=40.48 Aligned_cols=52 Identities=17% Similarity=-0.087 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHhcCCC---chhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 406 HGWHEKALAAVEAGQGR---SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 406 ~~~~~~Al~~~~~~~~~---~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
.+.|++|+..++..... ...........+..++..|++++|...+.+.+..+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 36899999887754421 11122344555666778899999998777766643
No 418
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.02 E-value=8.5 Score=39.52 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC--C----ce--EEEeCCC-CeeEEEeCC
Q 004914 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT--D----EK--MKFDYHR-PMKAISLDP 143 (724)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~--~----~~--~~~~~~~-~v~~v~~~p 143 (724)
|.++.++..+..++.+..+-..-++|+|||||+.+..+. ..+.|.-+++.. + .. ..+.... ..-.++.+.
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 456666665666666666666668899999998666554 457788887752 1 11 1122222 555666776
Q ss_pred CCCCCCCCEEEEecCCC-eEEEEecccCCccceEeccCCCCeEEEEEeC
Q 004914 144 DYTRKMSRRFVAGGLAG-HLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT 191 (724)
Q Consensus 144 ~~~~~~~~~l~~g~~dg-~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~ 191 (724)
+ |.+.+++..+| .|..|+.. +.....+.-....+++++|-|
T Consensus 223 d-----G~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 223 D-----GNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred C-----CCEEEecccCCceEEEECCC--CcEEEEEECCCCCCccceEeC
Confidence 6 67775555554 78887774 666666666656788888885
No 419
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=91.00 E-value=8.8 Score=38.76 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=81.1
Q ss_pred EeeCCchhhH---HHHHhcccHHHHHHHHHh---cCC-CchhHhHHHHHHHHHHhccchHHHHH----------------
Q 004914 391 AKPRDAEDHI---AWLLEHGWHEKALAAVEA---GQG-RSELLDEVGSRYLDHLIVERKYAEAA---------------- 447 (724)
Q Consensus 391 ~~~~~~~d~i---~~ll~~~~~~~Al~~~~~---~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa---------------- 447 (724)
..+.+.+-++ .-+-.+|.-+.|+.+=+. +++ +.+++.....+-+..+...|-|+.|-
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 4455556666 335579999999977432 222 44444333333344444444444443
Q ss_pred -hhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHH
Q 004914 448 -SLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALP 526 (724)
Q Consensus 448 -~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~ 526 (724)
+....++.. ..+|++.|.....- .++.+..|...+.+|+.++.....+. -+.+.
T Consensus 144 lqqLl~IYQ~-treW~KAId~A~~L--------------~k~~~q~~~~eIAqfyCELAq~~~~~----------~~~d~ 198 (389)
T COG2956 144 LQQLLNIYQA-TREWEKAIDVAERL--------------VKLGGQTYRVEIAQFYCELAQQALAS----------SDVDR 198 (389)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHH--------------HHcCCccchhHHHHHHHHHHHHHhhh----------hhHHH
Confidence 444444443 46899888775431 12344455555666655321111111 12234
Q ss_pred HHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 527 VISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
....+...+..+.....-.-.+..++...|+|++|++.|-.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 44445454433333222334577799999999999998765
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.95 E-value=20 Score=36.60 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=82.0
Q ss_pred CEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE--eCCCCeeEEEe
Q 004914 65 RMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF--DYHRPMKAISL 141 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~--~~~~~v~~v~~ 141 (724)
....+.+..|.|+.-.=.|..- .....-.+.+..+.-+++|++++.++......-|+--...-... ...+.|.++.|
T Consensus 115 ~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 115 GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE
T ss_pred CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhcee
Confidence 3333344445444322233332 22344557888898999999877775544455677543333332 33349999999
Q ss_pred CCCCCCCCCCEEEEecCCCeEEEEecccCCccce--Eec--cCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEE
Q 004914 142 DPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLH--SGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITF 215 (724)
Q Consensus 142 ~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~--~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~ 215 (724)
.|+ +...+++ ..|.+++-+..-...... ... ...-.+..++|. +.+.+++..++ .+.....|+.-..
T Consensus 195 ~~~-----~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~ 267 (302)
T PF14870_consen 195 SPD-----GNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQK 267 (302)
T ss_dssp -TT-----S-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE
T ss_pred cCC-----CCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceE
Confidence 999 5555544 888888765110111110 111 122337888998 45666665554 3555556654433
Q ss_pred ecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEE
Q 004914 216 IERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIA 251 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw 251 (724)
.+... ..+. -...+.| .+++-++.|.+|.+--|
T Consensus 268 ~~~~~--~~~~-n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 268 DRVGE--NVPS-NLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -GGGT--TSSS----EEEEEETTEEEEE-STTEEEEE
T ss_pred Ccccc--CCCC-ceEEEEEcCCCceEEECCCcEEEEe
Confidence 22111 1111 1334556 66788999999987544
No 421
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.86 E-value=7.7 Score=43.78 Aligned_cols=209 Identities=15% Similarity=0.147 Sum_probs=103.6
Q ss_pred cCCEEEEEeCCC------eEEEEecCCCeeEEEcC--CccceeEEEEcCCCCEEEEEeCC-C-----CEEEEeccCCceE
Q 004914 63 AERMIALGTHAG------TVHILDFLGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDD-G-----SVVINSLFTDEKM 128 (724)
Q Consensus 63 ~~~~la~g~~dg------~I~i~d~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~D-g-----~v~iwd~~~~~~~ 128 (724)
.+..+++|+.++ .+..+|...+.-..+.. +...-.++++. +|...++||.| | ++..||..+++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 355777887774 56678874443222111 11122333333 46778888888 3 4667788776643
Q ss_pred E---EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEE-----EecccCCccceEeccC---CCCeEEEEEeCCEEEEE
Q 004914 129 K---FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYL-----NSKKWLGYRDQVLHSG---EGPVHVVKWRTSLIAWA 197 (724)
Q Consensus 129 ~---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l-----~~~~~~~~~~~~l~~~---~~~V~~l~~~~~~la~~ 197 (724)
. +...+.-.+++... |...++||.||.-.+ |+.. ..+....... ........+.|.+.+.+
T Consensus 363 ~~a~M~~~R~~~~v~~l~------g~iYavGG~dg~~~l~svE~YDp~--~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLD------GKLYAVGGFDGEKSLNSVECYDPV--TNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred ccCCccCccccceeEEEC------CEEEEEeccccccccccEEEecCC--CCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 3 23333112222222 578999999986443 3322 1222222211 22233344457665554
Q ss_pred -cCC------cEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC-----eEEEEEEeeCCCCCCCCc
Q 004914 198 -NDA------GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT-----YIKIASIKTNQSNVANGT 264 (724)
Q Consensus 198 -~d~------~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~-----~i~vw~~~~~~~~~~~~~ 264 (724)
.++ ++..||..++.....-+..... ....++.-++.++++| .++ +|..+|..+++..
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-----~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~----- 504 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-----SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT----- 504 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccccc-----ccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-----
Confidence 332 4778888877654331111111 1112333467777777 444 2555666554422
Q ss_pred cccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEe
Q 004914 265 YRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY 300 (724)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~ 300 (724)
..........-.|++..++.+.+++.
T Consensus 505 ----------~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 505 ----------MVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ----------EcccCccccccccEEEECCEEEEEec
Confidence 11112223344556667766665554
No 422
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=90.83 E-value=1.1 Score=45.61 Aligned_cols=57 Identities=25% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHHHHHHhcCCC--chhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQGR--SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~--~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..++.+|+|++|++..+....+ ...-......+++-....++++.|.+.|.+++..+
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~ 74 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD 74 (280)
T ss_dssp -----------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4477899999999998543211 11123456666666777889999998888877643
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.64 E-value=1.1 Score=42.74 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=73.2
Q ss_pred EEEEeCCCCEEEEeccCCceE--EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeE
Q 004914 108 VGSCSDDGSVVINSLFTDEKM--KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVH 185 (724)
Q Consensus 108 l~s~~~Dg~v~iwd~~~~~~~--~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~ 185 (724)
+...+.||.|.-++++..+.. .-..+ .+.--.+. .+..+++|+.+|.|.+|.....+.....+.....+|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~---~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFI---DEGQRVVT----ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhh---hcceeecc----cCceEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 455667788887777653221 11111 11111122 2578999999999999876544443333344444454
Q ss_pred EEEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEee
Q 004914 186 VVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 186 ~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~ 255 (724)
++.-. +.+..++ .|+.|+.|++.-++.+..+..+... +....+++|.++.|.+|++..
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~------------~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE------------SGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCC------------CcceeEEecCCceEEeecccc
Confidence 44444 2355555 7999999999988877765444321 223344455666666665443
No 424
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.54 E-value=13 Score=36.78 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred EEEcCCccceeEEEEcCCCCE-EEEEeCCCCEEEEeccCCceEEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 87 KEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
+.+.+-...+++++|+|+.+. ++.....+.|...+..+..+.++.... -.-+|++..+ +.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~-----~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGN-----GRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-ST-----TEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECC-----CEEEEEEcCCCcEE
Confidence 345555556999999998665 555566778887887544334444443 6788888776 55666555688888
Q ss_pred EEecccCCcc-----ceEec-----cCCCCeEEEEEe---CCEEEEEcCCcEEEEEcCC
Q 004914 164 LNSKKWLGYR-----DQVLH-----SGEGPVHVVKWR---TSLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 164 l~~~~~~~~~-----~~~l~-----~~~~~V~~l~~~---~~~la~~~d~~i~i~d~~~ 209 (724)
++...-.+.. ...+. .+...+-+++|+ +.++++-......+|.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 7765322211 11111 234558999999 3455544555566776653
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.35 E-value=2.5 Score=41.05 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=49.8
Q ss_pred ccccCCCceEEEEecCCEEEEEeCCCeEEEEecCCCee--EE------Ec-------CCccceeEEEEcCCCCEEEEEeC
Q 004914 49 PSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQV--KE------FP-------AHTAAVNDLSFDVDGEYVGSCSD 113 (724)
Q Consensus 49 ~~~~~~~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~--~~------~~-------~h~~~V~~l~~s~~g~~l~s~~~ 113 (724)
+.+.-+..++.+..+++++.+-+.+|.+++||+..... .. +. .....|..+.++.+|.-+++-+
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls- 85 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS- 85 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-
Confidence 34444556777888999999999999999999954331 11 11 2445677777777776666554
Q ss_pred CCCEEEEeccC
Q 004914 114 DGSVVINSLFT 124 (724)
Q Consensus 114 Dg~v~iwd~~~ 124 (724)
+|....|+..-
T Consensus 86 ng~~y~y~~~L 96 (219)
T PF07569_consen 86 NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEecccc
Confidence 36666666543
No 426
>PHA03098 kelch-like protein; Provisional
Probab=90.32 E-value=18 Score=40.70 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=85.5
Q ss_pred EEEecCCEEEEEeCCC------eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCC-----CEEEEeccC
Q 004914 59 CVAVAERMIALGTHAG------TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFT 124 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg------~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~ 124 (724)
+...++..+++|+.++ .+..||........+.. .......+. -++..++.||.++ .+..||..+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 4455777788887643 46677775443322221 111112222 3567777777653 466788776
Q ss_pred CceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecCC------CeEEEEecc---cCCccceEeccCCCCeEEEEEeCC
Q 004914 125 DEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLA------GHLYLNSKK---WLGYRDQVLHSGEGPVHVVKWRTS 192 (724)
Q Consensus 125 ~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~d------g~v~l~~~~---~~~~~~~~l~~~~~~V~~l~~~~~ 192 (724)
+..... ...+.-.+++.. + +..++.||.+ ..+..|+.. |... ...........++...+.
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~-~-----~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~ 439 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNV-N-----NLIYVIGGISKNDELLKTVECFSLNTNKWSKG--SPLPISHYGGCAIYHDGK 439 (534)
T ss_pred CceeeCCCcCcCCccceEEEE-C-----CEEEEECCcCCCCcccceEEEEeCCCCeeeec--CCCCccccCceEEEECCE
Confidence 554322 122211222222 2 4677777732 235555542 3211 111111111223333455
Q ss_pred EEEEE-cC--------CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-e-----CCeEEEEEEeeCC
Q 004914 193 LIAWA-ND--------AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-W-----GTYIKIASIKTNQ 257 (724)
Q Consensus 193 ~la~~-~d--------~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~-----d~~i~vw~~~~~~ 257 (724)
+.+.| .+ ..+.+||..+++....-..+ .++ ...+++..++..+++| . .+.+.++|..++.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPR---INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCC--ccc---ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 55544 21 12788888876544321111 111 1122222366666666 2 2357777766554
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.27 E-value=15 Score=41.95 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=86.8
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCCee-------EEE--c--------------CCccceeEEEEcC--CCCEEE
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGNQV-------KEF--P--------------AHTAAVNDLSFDV--DGEYVG 109 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~-------~~~--~--------------~h~~~V~~l~~s~--~g~~l~ 109 (724)
...+|++. +++++++. .+.|.||++++-.. ..+ . .-...|+.|.... ....|+
T Consensus 41 NNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 41 NNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 34566665 67776755 68899998843110 000 0 0112355554443 345788
Q ss_pred EEeCCCCEEEEeccC-------C--------------ceEEEeCCCCeeEEEeC--CCCCCCCCCEEEEecCCCeEEEEe
Q 004914 110 SCSDDGSVVINSLFT-------D--------------EKMKFDYHRPMKAISLD--PDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 110 s~~~Dg~v~iwd~~~-------~--------------~~~~~~~~~~v~~v~~~--p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
.|.+||.|.+|...+ . ....+.....+++++++ .. .+++|+++....|.+|-
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-----~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-----SRLIAVSSNSQEVTVFA 193 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-----ceEEEEecCCceEEEEE
Confidence 999999999996531 0 01223333388999998 55 68999999999999885
Q ss_pred cccCCccceE--eccCCCCeEEEEEe-------CC-EEEEE-cCCcEEEEEc
Q 004914 167 KKWLGYRDQV--LHSGEGPVHVVKWR-------TS-LIAWA-NDAGVKVYDA 207 (724)
Q Consensus 167 ~~~~~~~~~~--l~~~~~~V~~l~~~-------~~-~la~~-~d~~i~i~d~ 207 (724)
......+... -..+..-|-+|+|- |. .++++ -.|.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4322111111 11244567888887 22 44444 4788888777
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=90.23 E-value=14 Score=40.93 Aligned_cols=140 Identities=11% Similarity=0.016 Sum_probs=67.2
Q ss_pred ecCCEEEEEeCCC-----eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEEE-
Q 004914 62 VAERMIALGTHAG-----TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMKF- 130 (724)
Q Consensus 62 ~~~~~la~g~~dg-----~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~~- 130 (724)
.++..+++|+.++ ++..||...+.-..+.. .......+ .-+|...+.||.++ .+..||..++.....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 4566778887653 46677774443222211 11111112 23577777777543 577788766544332
Q ss_pred --eCCCCeeEEEeCCCCCCCCCCEEEEecCCCe---EEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEEcCCcE
Q 004914 131 --DYHRPMKAISLDPDYTRKMSRRFVAGGLAGH---LYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWANDAGV 202 (724)
Q Consensus 131 --~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~---v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~~d~~i 202 (724)
...+.-.+++.. + ++..+.||.++. +..|+... ........ .......+...|.+.+.| |.+
T Consensus 348 ~l~~~r~~~~~~~~-~-----g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNPAVASI-N-----NVIYVIGGHSETDTTTEYLLPNH--DQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCcccEEEEE-C-----CEEEEecCcCCCCccEEEEeCCC--CEEEeCCCCCCccccceEEEECCEEEEEC--Cce
Confidence 212211122222 2 477788876543 44555421 11111111 111122334446665655 346
Q ss_pred EEEEcCCCceE
Q 004914 203 KVYDAANDQRI 213 (724)
Q Consensus 203 ~i~d~~~~~~~ 213 (724)
-+||..+++-.
T Consensus 418 e~ydp~~~~W~ 428 (480)
T PHA02790 418 EFYCESSNTWT 428 (480)
T ss_pred EEecCCCCcEe
Confidence 78888766544
No 429
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.99 E-value=0.82 Score=34.45 Aligned_cols=58 Identities=21% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
-..+++.|+|++|+...+......-.-..+....+.-++..|+|++|...+.+.+..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3568899999999999886544222245677888888999999999999888776643
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.91 E-value=8.5 Score=43.30 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=66.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE---EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec-ccC
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-KWL 170 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-~~~ 170 (724)
..+-++-+.-++.-+.-+....+.|||...+..- .+..+.+|..+.|.... .++.+++.|-.+.|.++.. +.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEccchh
Confidence 4444555554554334334456899999887643 23334599999996542 2566776667778888743 111
Q ss_pred ----Cc---cceE--eccC-CCCeEEEEEe-CCEEEEEcCCcEEEEEcC
Q 004914 171 ----GY---RDQV--LHSG-EGPVHVVKWR-TSLIAWANDAGVKVYDAA 208 (724)
Q Consensus 171 ----~~---~~~~--l~~~-~~~V~~l~~~-~~~la~~~d~~i~i~d~~ 208 (724)
+. .... +..+ ..+|....|. +..+++++++.+.|+|-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 11 1111 2223 3678889998 455666667788888753
No 431
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.80 E-value=3.9 Score=44.26 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=93.1
Q ss_pred HHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc---ChhhH-----HHHHHHH--
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG---SASAW-----ERWVFHF-- 468 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~---~~~~w-----e~~i~~F-- 468 (724)
.+.+++.|+|+.|++.++.... .++ -..+....+.-+...|+|++|.++++.+... +...+ .-+...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5778889999999998775433 111 1257788888899999999999988887743 23333 1121112
Q ss_pred -hhcCCCCcc---cccCcCCCCCCCHHHHHHHHHHHHcCCccHHH----HHHHhhcCCCCc---------------cChH
Q 004914 469 -AHLRQLPVL---VPYMPTENPRLRDTAYEVALVALATNPSFHKY----LLSTVKSWPPVI---------------YSAL 525 (724)
Q Consensus 469 -~~~~~l~~L---~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~----~~~~i~~~~~~l---------------~~~~ 525 (724)
.....+..| ..-+|... +-++..+..+-..++... +.+. +.+.+++.|..- =+..
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~-~~~~~l~~~~a~~l~~~g-~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHR-RHNIALKIALAEHLIDCD-DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHH-hCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 222212222 22333221 112333333222332221 2221 222222211111 1234
Q ss_pred HHHHHHhhhhccCcchH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 004914 526 PVISAIEPQLNSSSMTD--ALKEALAELYVIDGHYEKAFSLYA 566 (724)
Q Consensus 526 ~~~~~~~~~~~~~~~~~--~~~~~l~~ly~~~~~~~~al~~~~ 566 (724)
.....++..+......+ .+...++-+|.+.|+|++|.+++-
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55666666676667777 888899999999999999999765
No 432
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.79 E-value=2.4 Score=46.89 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=52.6
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHH
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERW 464 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~ 464 (724)
++..+.+.|.|++||++.+.....---...+...-++.|+.-|++++|...|..++..+++.|.+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 356788999999999998876542111346788889999999999999999999999887777654
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.67 E-value=18 Score=38.23 Aligned_cols=186 Identities=8% Similarity=0.068 Sum_probs=106.3
Q ss_pred cCCEEEEEeCCCeEEEEecCCCe---eEEE-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-----EEEeCC
Q 004914 63 AERMIALGTHAGTVHILDFLGNQ---VKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-----MKFDYH 133 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~~~---~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-----~~~~~~ 133 (724)
|.+...++...|.+.=|-..|.. ...+ ....++|.++.|++|.+.+|.--.|.+|-..+...... .+.+..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 44444555555666666653321 2233 23567999999999999999999999999999854221 123344
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--C--EEEEE-cCCcEEEEEc
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--S--LIAWA-NDAGVKVYDA 207 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--~--~la~~-~d~~i~i~d~ 207 (724)
. .|.+..|+.+ .-++.-+..| +-+|...-..+..+.+..+...|.--.|+. . +++++ ..+++.=+.+
T Consensus 112 ~~~IlGF~W~~s------~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 112 NANILGFCWTSS------TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred cceeEEEEEecC------eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 4 6999999877 5566555544 444544333455666667777777777773 2 33444 3455555666
Q ss_pred CCCceEEEecCCC-C-CCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeCCC
Q 004914 208 ANDQRITFIERPR-G-SPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 208 ~~~~~~~~i~~~~-~-~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
+++...+ ++.-. + ........|.+ +.+..-.+.--|.+++.-++....
T Consensus 185 ~~~~v~k-LPkfe~~~p~~~~~~kp~l--se~d~~L~tVYG~lyvL~l~~~s~ 234 (657)
T KOG2377|consen 185 RAGTMSK-LPKFEIELPAAPKSTKPSL--SERDIALATVYGQLYVLFLRHHSR 234 (657)
T ss_pred eeceeee-ccceeecCCCCccCCCCcc--cccceEEEEEeeEEEEEEEeccCc
Confidence 6554332 11110 0 11111122222 233333333667788877766543
No 434
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.50 E-value=19 Score=38.88 Aligned_cols=150 Identities=17% Similarity=0.024 Sum_probs=70.4
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCCCCc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQLPV 476 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~l~~ 476 (724)
+...++|+++.|..+.+.... .++....+...++.-++..|+|+.|.+.+.+.....+ ....-........+..+.
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 335566777777777654321 1111123455567777778888877766655554322 222233333334444443
Q ss_pred ccccCcCCC--CCCCHHHHH-HHHHHH---HcC---CccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHH
Q 004914 477 LVPYMPTEN--PRLRDTAYE-VALVAL---ATN---PSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEA 547 (724)
Q Consensus 477 L~~~l~~~~--~~l~~~~~~-~~L~~~---l~~---~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (724)
..+.+|.-. ..+++..+. ..+..+ +.. ....+.+.+.....| ....+...+.-.
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p-----------------~~~~~~~~l~~~ 268 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP-----------------RHRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC-----------------HHHhCCHHHHHH
Confidence 333333321 112333221 111111 100 000111111111111 001134567778
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004914 548 LAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 548 l~~ly~~~~~~~~al~~~~~ 567 (724)
++.++...|++++|++.+-+
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHCCChHHHHHHHHH
Confidence 88899999999999887654
No 435
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.50 E-value=22 Score=39.39 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=42.6
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCcc------cee--EEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTA------AVN--DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~------~V~--~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.+..+.+++.+|.++-+|. +|+.+..+..... .+. .+... ++..++.++.+|.|..+|..+++..
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe
Confidence 3556778888899999998 6766555433221 110 11111 2267888888999999999987754
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=89.37 E-value=30 Score=36.14 Aligned_cols=148 Identities=12% Similarity=0.089 Sum_probs=79.2
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCC-C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYH-R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
.+.+.++.+.|++.+++. +..|.+..-.-..+. -...... . .++++.+.|+ ++.+++| ..|.+.+-..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~-----g~~~~vg-~~G~~~~~s~d- 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPD-----GNLWMLA-RGGQIRFNDPD- 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCC-----CCEEEEe-cCCEEEEccCC-
Confidence 457889999998866544 445655432112223 2223222 2 8899999998 6666655 45776542121
Q ss_pred CCccceEecc----CCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE
Q 004914 170 LGYRDQVLHS----GEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI 242 (724)
Q Consensus 170 ~~~~~~~l~~----~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~ 242 (724)
.+.....+.. ....+.++.+. +.+++++.+|.+. .....++.-..+..+...+ . ....+.+ .++..+++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVP--S-NFYKIVFLDPEKGFVL 319 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCC--c-ceEEEEEeCCCceEEE
Confidence 2222221111 12346777777 4677776666553 4444444333322211111 1 1233444 57778888
Q ss_pred EeCCeEEEEE
Q 004914 243 GWGTYIKIAS 252 (724)
Q Consensus 243 g~d~~i~vw~ 252 (724)
|..|.|-.++
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 8888886553
No 437
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.08 E-value=41 Score=39.76 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhc-CCCchhHHHHHhccCChHHHH
Q 004914 633 FLHLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVK-RDLLREQVFILGRMGNTKHAL 710 (724)
Q Consensus 633 ~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~-~~~~~e~v~Ll~k~g~~~~Al 710 (724)
.....|+.+....|.. ......+..+|. .-++++.+..|+. |+.+-.. ..+.-..++++.+.|++++|.
T Consensus 377 eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~--------al~l~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 377 QAEMRARELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKK--------AEVLEPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 3346777777777754 567777777774 3345555554443 3333322 235557888999999999999
Q ss_pred HHH
Q 004914 711 AVI 713 (724)
Q Consensus 711 ~l~ 713 (724)
.++
T Consensus 448 ~~~ 450 (765)
T PRK10049 448 VLT 450 (765)
T ss_pred HHH
Confidence 887
No 438
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.86 E-value=4.9 Score=44.74 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=66.9
Q ss_pred cCCEEEEEeCCCeEEEEecCC-----CeeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccCCc----------
Q 004914 63 AERMIALGTHAGTVHILDFLG-----NQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDE---------- 126 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~---------- 126 (724)
+|++..+ .++.|.++|... ..+...-.=......+.++|||+++++++ .+.+|.|.|+.+.+
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 4555444 256788999843 33333222334567889999999876655 58999999998733
Q ss_pred ---eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 127 ---KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 127 ---~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
.............+|+++ |..+.+-..|..|..|+..
T Consensus 365 ~~vvaevevGlGPLHTaFDg~-----G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 365 DAVVAEPELGLGPLHTAFDGR-----GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ceEEEeeccCCCcceEEECCC-----CCEEEeEeecceeEEEehH
Confidence 112233334456788888 7888888899999999754
No 439
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.63 E-value=1.5 Score=41.82 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=42.3
Q ss_pred cCCEEEEEeCCCeEEEEecCC--CeeEEEcCCccceeE-EEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 63 AERMIALGTHAGTVHILDFLG--NQVKEFPAHTAAVND-LSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~--~~~~~~~~h~~~V~~-l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.+..+++|+.+|.|.+|+.+. .....+..-..+|.+ +.-..++.+..+++.||.|+.|++.-++..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 456788999999999998852 222222222223322 222334557788899999999998765543
No 440
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.30 E-value=46 Score=36.91 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=24.7
Q ss_pred EEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCC
Q 004914 187 VKWRTSLIAWA-NDAGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 187 l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~ 219 (724)
+...+.++..+ .|+.++.+|..+|+.+...+.+
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 33445666655 7999999999999998876554
No 441
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=87.89 E-value=0.15 Score=40.59 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=2.9
Q ss_pred cccccccccCcCCCccceecc
Q 004914 25 DEEEEEEEEEEEPRLKYQRMG 45 (724)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ 45 (724)
+++++++++++.|..+|....
T Consensus 30 dDddddee~de~p~p~fgea~ 50 (101)
T PF09026_consen 30 DDDDDDEEEDEVPVPEFGEAM 50 (101)
T ss_dssp ----------------HHHHH
T ss_pred cccccccccccccchhHHHHH
Confidence 334444445577877776554
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.66 E-value=29 Score=37.10 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=61.3
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc------eEEEeC--CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------KMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
...++++.|.++|..++.+ .+|.+. |....+. ...... .. .+.++.+.++ +. ++.++..|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d-----~~-~~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK-----KE-AWAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCC-----Cc-EEEEECCCcEE
Confidence 4578899999999877655 556654 3333332 222222 22 5889999887 44 45555567766
Q ss_pred EEecccCCccceEec---cCCCCeEEEEEe--CCEEEEEcCCcEEEE
Q 004914 164 LNSKKWLGYRDQVLH---SGEGPVHVVKWR--TSLIAWANDAGVKVY 205 (724)
Q Consensus 164 l~~~~~~~~~~~~l~---~~~~~V~~l~~~--~~~la~~~d~~i~i~ 205 (724)
.... .|....... .-......+.|. ++..+.+.+|.|.-|
T Consensus 352 ~s~D--~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RSTD--GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EeCC--CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 5432 233333333 224567888886 577777777776544
No 443
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.62 E-value=13 Score=40.62 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=70.0
Q ss_pred cceeEEEEcCCC----CEEEEEeCCCCEEEEeccC-----CceE---EEeC--CC--CeeEEEeCCCCCCCCCCEEEEec
Q 004914 94 AAVNDLSFDVDG----EYVGSCSDDGSVVINSLFT-----DEKM---KFDY--HR--PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 94 ~~V~~l~~s~~g----~~l~s~~~Dg~v~iwd~~~-----~~~~---~~~~--~~--~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
..|.+++|.|-+ ..++.......|.||.+.- ++.. +... .- -..++.|||. ...+++-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-----~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-----KAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-----CceEEEEe
Confidence 458899999853 2577777788999999862 2221 1111 11 3357889998 45555544
Q ss_pred CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCC
Q 004914 158 LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAN 209 (724)
Q Consensus 158 ~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~ 209 (724)
....-.+++...++...+.=-...|.|.|.+|. |+.++++ +.=.-++||-..
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 444444555555555554434578899999998 6655555 434568888653
No 444
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.55 E-value=13 Score=39.74 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCc----hhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRS----ELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~----~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+..+|+|++|+.+.+...... .....+....+..++..|+|++|...+.+.+.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 356789999999999877543311 11224556667778899999999998887765
No 445
>PRK14574 hmsH outer membrane protein; Provisional
Probab=87.53 E-value=52 Score=38.97 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 544 LKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
.+..++.+|...+++.+|+..|-++
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3466677777777777788777664
No 446
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.47 E-value=49 Score=38.35 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=43.5
Q ss_pred HhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCCCC
Q 004914 404 LEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQLP 475 (724)
Q Consensus 404 l~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~l~ 475 (724)
+..|++++|+..++.... .+.. .......+.-+...|++++|...+.+.+..++ ..|..........++.+
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence 569999999998775432 1110 12334445667788999999998888776433 34444444444555433
No 447
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.45 E-value=5.2 Score=43.06 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=35.2
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.+.++..|+|+.|+..++......-.-..+...-+.-+...|+|++|..+++.+..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677788888888887654331111123444455556667888888877776664
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.67 E-value=0.1 Score=54.58 Aligned_cols=138 Identities=13% Similarity=0.164 Sum_probs=95.3
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCCEEEEeccCCceEEEeCC--C
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINSLFTDEKMKFDYH--R 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd~~~~~~~~~~~~--~ 134 (724)
..|.+.+.-+++++.+..+..||-.|+...... .++...+++|+.+|..++ .+-..+.+.+||+.+.....+... .
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 358887777999999999999999888765543 334556789999888644 456688999999987544433222 2
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcE
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGV 202 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i 202 (724)
.-.-..|++. ...++.|...|.+.+++.+ ..+...+...|...+++++|. +..+.++.|..+
T Consensus 119 s~sll~wsKg-----~~el~ig~~~gn~viynhg-tsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 119 SKSLLAWSKG-----TPELVIGNNAGNIVIYNHG-TSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred hHHHHhhccC-----CccccccccccceEEEecc-chhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 2233678887 6788899999999998775 233333333377788889988 344434345444
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.59 E-value=37 Score=33.90 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=77.0
Q ss_pred EEEecCCEEEEEe---CCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEe-ccCCc--eEEEeC
Q 004914 59 CVAVAERMIALGT---HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS-LFTDE--KMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~---~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd-~~~~~--~~~~~~ 132 (724)
+++++++.+|.-+ ....++++...+.......+. .++..+|+++|...+....+...+++. ..++. ...+..
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~ 107 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW 107 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc
Confidence 6888998776655 344566666544433333333 778889999988777766666667664 33332 222322
Q ss_pred --CC-CeeEEEeCCCCCCCCCCEEEEec---CCCeEEEEeccc--CC------ccceEeccCCCCeEEEEEe--CCEEEE
Q 004914 133 --HR-PMKAISLDPDYTRKMSRRFVAGG---LAGHLYLNSKKW--LG------YRDQVLHSGEGPVHVVKWR--TSLIAW 196 (724)
Q Consensus 133 --~~-~v~~v~~~p~~~~~~~~~l~~g~---~dg~v~l~~~~~--~~------~~~~~l~~~~~~V~~l~~~--~~~la~ 196 (724)
.. .|+++.++|+ |..++.-. .++.+.+-...- .+ ............++.+.|. +.+++.
T Consensus 108 ~~~~~~I~~l~vSpD-----G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 108 PGLRGRITALRVSPD-----GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred cccCCceEEEEECCC-----CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 22 7999999999 66665543 345665542211 12 1111112234678899998 355555
Q ss_pred E
Q 004914 197 A 197 (724)
Q Consensus 197 ~ 197 (724)
+
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 5
No 450
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.53 E-value=24 Score=35.01 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=87.8
Q ss_pred cceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEE-EeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 94 AAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMK-FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~-~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
.-..++.|..+|.++-|.|.-| .|+.+|+.++++.. ..... --.+++...+ +.+...=.+|...+|+..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d------~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD------KLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT------EEEEEESSSSEEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC------EEEEEEecCCeEEEEccc
Confidence 3456788878889889998877 68889999987653 33332 3445555554 566666677778777764
Q ss_pred cCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC
Q 004914 169 WLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT 246 (724)
Q Consensus 169 ~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~ 246 (724)
.-.....+. ..+.=++++..++.+..+ ....+.++|..+-+....+.-... ..+.....-+-|.+|...+-- ..+
T Consensus 119 -tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv~~LNELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 119 -TLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPVSNLNELEYINGKIYANVWQTD 195 (264)
T ss_dssp -TTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE---EEEEEEETTEEEEEETTSS
T ss_pred -cceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEECCCcEeEEEEcCEEEEEeCCCC
Confidence 222333322 234557777777666555 567899999888777766544321 111122344556566655555 445
Q ss_pred eEEEEEEeeC
Q 004914 247 YIKIASIKTN 256 (724)
Q Consensus 247 ~i~vw~~~~~ 256 (724)
.|...|..++
T Consensus 196 ~I~~Idp~tG 205 (264)
T PF05096_consen 196 RIVRIDPETG 205 (264)
T ss_dssp EEEEEETTT-
T ss_pred eEEEEeCCCC
Confidence 5555555444
No 451
>PHA02713 hypothetical protein; Provisional
Probab=86.43 E-value=9 Score=43.24 Aligned_cols=147 Identities=8% Similarity=0.045 Sum_probs=72.7
Q ss_pred EEEecCCEEEEEeCCC-----eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCC---------------
Q 004914 59 CVAVAERMIALGTHAG-----TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG--------------- 115 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg-----~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg--------------- 115 (724)
+...+|+..++|+.+| ++..||...+.-..... .......+ .-+|...+.||.++
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccc
Confidence 3455788888888764 47788885443222211 11111112 23577777777653
Q ss_pred --------CEEEEeccCCceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecCCC------eEEEEeccc-CC-ccceE
Q 004914 116 --------SVVINSLFTDEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLAG------HLYLNSKKW-LG-YRDQV 176 (724)
Q Consensus 116 --------~v~iwd~~~~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg------~v~l~~~~~-~~-~~~~~ 176 (724)
.+..||..+.+-..+ ...+.-.+++... ++..++|+.++ .+..|+... +. .....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~------~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK------DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEEC------CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 366677776544322 2222111222222 46777777543 244565432 11 11112
Q ss_pred eccCCCCeEEEEEeCCEEEEE-cCC--cEEEEEcCCCceE
Q 004914 177 LHSGEGPVHVVKWRTSLIAWA-NDA--GVKVYDAANDQRI 213 (724)
Q Consensus 177 l~~~~~~V~~l~~~~~~la~~-~d~--~i~i~d~~~~~~~ 213 (724)
+.........+...|.+.+.| .++ ++-.||..+.+-.
T Consensus 499 m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 499 TESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cCcccccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 222223333444447666665 455 5777777766543
No 452
>PRK11189 lipoprotein NlpI; Provisional
Probab=86.28 E-value=3.3 Score=42.57 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=33.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+...|+|++|++..+.... .++ -.......+.-++..|+|++|.+.+.+.+..++
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 456678888888877654422 111 112333344455667888888887777776543
No 453
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.04 E-value=1.3 Score=34.14 Aligned_cols=57 Identities=21% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..++++++|++|++.++.... .++ -......++.-++..|+|++|.+.+..++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 468899999999999876543 111 234677788899999999999998888876443
No 454
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=54 Score=35.04 Aligned_cols=152 Identities=11% Similarity=0.075 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCE-EEEEeCCCCEEEEeccCCceEEE-eCCCCeeEEEeCCCCCCCCCCEEEEecC---CCeEEEEecccC
Q 004914 96 VNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKF-DYHRPMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWL 170 (724)
Q Consensus 96 V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~-~~~~~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~ 170 (724)
-.++.+++.+.. .++...++.|.+.|..+...... ........++++|+ +..+.++.. ++.+.+.+..+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~-----~~~vYV~n~~~~~~~vsvid~~t- 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPD-----GKYVYVANAGNGNNTVSVIDAAT- 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCC-----CCEEEEEecccCCceEEEEeCCC-
Confidence 356788888884 55555678999999777655443 33337788999999 555555444 56777766653
Q ss_pred CccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-e
Q 004914 171 GYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-W 244 (724)
Q Consensus 171 ~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~ 244 (724)
+...........| ..+++. |..+..+ .++.+.++|..+..... ..+.........++.+.+ .++..+.+. .
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEec
Confidence 3333334444455 778887 6655555 48889999977655542 222111222223445556 566655555 2
Q ss_pred C---CeEEEEEEeeC
Q 004914 245 G---TYIKIASIKTN 256 (724)
Q Consensus 245 d---~~i~vw~~~~~ 256 (724)
. +.+.+.|..++
T Consensus 227 ~~~~~~v~~id~~~~ 241 (381)
T COG3391 227 GSGSNNVLKIDTATG 241 (381)
T ss_pred cCCCceEEEEeCCCc
Confidence 2 36666666554
No 455
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.35 E-value=2.5 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=26.0
Q ss_pred cceeEEEEcCCC---CEEEEEeCCCCEEEEeccC
Q 004914 94 AAVNDLSFDVDG---EYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 94 ~~V~~l~~s~~g---~~l~s~~~Dg~v~iwd~~~ 124 (724)
++|.++.|+|++ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 4788888889999999985
No 456
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.16 E-value=30 Score=33.35 Aligned_cols=183 Identities=18% Similarity=0.272 Sum_probs=88.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCC---CEEEEEeCCCCEEEEeccCC--ceE-E---EeCC-
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDG---EYVGSCSDDGSVVINSLFTD--EKM-K---FDYH- 133 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g---~~l~s~~~Dg~v~iwd~~~~--~~~-~---~~~~- 133 (724)
+.++.+--..|.|+-||...+.+...+-...++.++.+--.| .+.+.++..--|.-||.... .+. + +...
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 345555566788888998655543322221223333333222 23444444334445664331 111 1 2221
Q ss_pred -C-CeeEEEeCCCCCCCCCCEEEEecC----------CCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEE-EEE-
Q 004914 134 -R-PMKAISLDPDYTRKMSRRFVAGGL----------AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLI-AWA- 197 (724)
Q Consensus 134 -~-~v~~v~~~p~~~~~~~~~l~~g~~----------dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~l-a~~- 197 (724)
. ..+.-..+|+ |+++ .|.. .|.++.|.. +.....+...-+--.+++|+ .+.+ ..-
T Consensus 107 kknR~NDgkvdP~-----Gryy-~GtMad~~~~le~~~g~Ly~~~~---~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 107 KKNRLNDGKVDPD-----GRYY-GGTMADFGDDLEPIGGELYSWLA---GHQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred HhcccccCccCCC-----Ccee-eeeeccccccccccccEEEEecc---CCCceeeehhccCCccccccccCcEEEEEcc
Confidence 1 5666777888 6763 3322 223333322 23333333333444678888 2322 222
Q ss_pred cCCcEEEEE--cCCCce-----EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 198 NDAGVKVYD--AANDQR-----ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 198 ~d~~i~i~d--~~~~~~-----~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+-.|.-|| ..+|.. +..+... .+.....+-.++. .+|.+.+++ .+++|.-.|..+++
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 466777787 555532 2222221 1222222333444 356666666 67788888887755
No 457
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=85.05 E-value=2.3 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEe
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILD 80 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d 80 (724)
+.|.|++...++++++++.+.+++|+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45789999999999999999999984
No 458
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=58 Score=34.75 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=92.9
Q ss_pred EEEEecCCEEEEEeC---CCeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccCCceEE---
Q 004914 58 SCVAVAERMIALGTH---AGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDEKMK--- 129 (724)
Q Consensus 58 ~~~s~~~~~la~g~~---dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~~~~--- 129 (724)
..++++++.+.++.. ++++.+.|... ..+.....-..+ ..++++|+|..+..+. .++.+.+.|..+..+..
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 357777876655544 68888888854 444443333334 7899999999665554 78899999987765553
Q ss_pred ---EeCCCCeeEEEeCCCCCCCCCCEEEEe-cCC--CeEEEEecccCCccceE-eccCCCCeEEEEEe--CCEEEEE--c
Q 004914 130 ---FDYHRPMKAISLDPDYTRKMSRRFVAG-GLA--GHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--TSLIAWA--N 198 (724)
Q Consensus 130 ---~~~~~~v~~v~~~p~~~~~~~~~l~~g-~~d--g~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~--~~~la~~--~ 198 (724)
.........++++|+ +..+.+. ..+ +.+...+.. .+..... .......-..+..+ |..+.+. .
T Consensus 200 ~~~~~~~~~P~~i~v~~~-----g~~~yV~~~~~~~~~v~~id~~-~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPD-----GNRVYVANDGSGSNNVLKIDTA-TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccccccCCCCceEEECCC-----CCEEEEEeccCCCceEEEEeCC-CceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 333335677889998 5544433 333 466655443 1111111 11111112233444 6666666 3
Q ss_pred CCcEEEEEcCCCceEEEecCCC
Q 004914 199 DAGVKVYDAANDQRITFIERPR 220 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~ 220 (724)
.+.+.+.|..+......+....
T Consensus 274 ~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 274 GGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred CCeEEEEeCCCCceeeeecccc
Confidence 4788899988877777655443
No 459
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.42 E-value=92 Score=36.60 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=101.2
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEE--cCCccceeEEEEcCCC------CEEEEEeCCCCEEEEecc-CCceE-E
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEF--PAHTAAVNDLSFDVDG------EYVGSCSDDGSVVINSLF-TDEKM-K 129 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~--~~h~~~V~~l~~s~~g------~~l~s~~~Dg~v~iwd~~-~~~~~-~ 129 (724)
.+.+...+++++.++.+...+..-..++.. +.-...|.|+.++|-| +.++.|..+..+.+--.. ..... .
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 444556777777777777777732223322 2234679999999752 267888877666554332 22222 1
Q ss_pred --EeCCC---CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC-C--ccceEeccCCCCeEEEEEe---CCEEEEEc
Q 004914 130 --FDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-G--YRDQVLHSGEGPVHVVKWR---TSLIAWAN 198 (724)
Q Consensus 130 --~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~--~~~~~l~~~~~~V~~l~~~---~~~la~~~ 198 (724)
+.... .|--..+-.+ ..++.++..||.+..+..... + ...+..+-+..|+.--.|+ +..+.+.+
T Consensus 575 ~~l~~~~iPRSIl~~~~e~d-----~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s 649 (1096)
T KOG1897|consen 575 EQLSGEIIPRSILLTTFEGD-----IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS 649 (1096)
T ss_pred eccCCCccchheeeEEeecc-----ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC
Confidence 12221 3333344444 589999999999887754321 1 1112122244566555565 46677778
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
|+-..+|..+.+=+...+..+. ....|.+.- .-+..++++.++.+++..+..
T Consensus 650 drP~viY~~n~kLv~spls~ke-----v~~~c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 650 DRPTVIYSSNGKLVYSPLSLKE-----VNHMCPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred CCCEEEEecCCcEEEeccchHH-----hhhhcccccccCCceEEEecCCceEEEEecc
Confidence 8888888765433333222221 011222211 223456667777777776653
No 460
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=83.58 E-value=0.59 Score=44.45 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=66.4
Q ss_pred CcccccCcCC-CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHH
Q 004914 475 PVLVPYMPTE-NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYV 553 (724)
Q Consensus 475 ~~L~~~l~~~-~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~ 553 (724)
+.|.||+-.+ ...+++.+...++.+|.... ..+.+.+.|-.++....|++.+++.|++.. ++.++.++|.
T Consensus 6 e~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~-~~~~lE~lI~~LD~~~LDidq~i~lC~~~~--------LydalIYv~n 76 (196)
T PF12816_consen 6 ECLEPFILSGKIKSLPPEVFKALVEHYASKG-RLERLEQLILHLDPSSLDIDQVIKLCKKHG--------LYDALIYVWN 76 (196)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHhCCHHhcCHHHHHHHHHHCC--------CCCeeeeeee
Confidence 4456666664 35678889999999997653 678899999999999999999999999988 8999999985
Q ss_pred hc-CCHHHHHHHHHH
Q 004914 554 ID-GHYEKAFSLYAD 567 (724)
Q Consensus 554 ~~-~~~~~al~~~~~ 567 (724)
+. ++|-.=|.-++.
T Consensus 77 ~~l~DYvTPL~~ll~ 91 (196)
T PF12816_consen 77 RALNDYVTPLEELLE 91 (196)
T ss_pred ccccCCcHHHHHHHH
Confidence 44 777766654443
No 461
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.64 E-value=7.6 Score=45.55 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=66.0
Q ss_pred cceeEEEEcCCCC-EEEEEeCCCCEEEEeccC--CceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 94 AAVNDLSFDVDGE-YVGSCSDDGSVVINSLFT--DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 94 ~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
..+.++.|+|.-. ..+.+..|+.|++..+.- ..+..+......+|++|+|. |.++++|...|++.-|...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-----GKQl~iG~nnGt~vQy~P~-- 228 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPR-----GKQLFIGRNNGTEVQYEPS-- 228 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccc-----cceeeEecCCCeEEEeecc--
Confidence 3456778888643 467778899998887654 22333444448899999999 9999999999999877653
Q ss_pred CccceEecc----CCCCeEEEEEeC--CEEEE
Q 004914 171 GYRDQVLHS----GEGPVHVVKWRT--SLIAW 196 (724)
Q Consensus 171 ~~~~~~l~~----~~~~V~~l~~~~--~~la~ 196 (724)
+.....+++ ....|.++.|-+ .++++
T Consensus 229 leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 222223332 247899999994 34443
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.32 E-value=18 Score=31.72 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=59.4
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-------ccceEeccCCCCeEEEEEe-------CCEEEEEcCCcEEE
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-------YRDQVLHSGEGPVHVVKWR-------TSLIAWANDAGVKV 204 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-------~~~~~l~~~~~~V~~l~~~-------~~~la~~~d~~i~i 204 (724)
-.|+.. ...+++++..|+|.+++..-.. .....+. -...|++++-. ...|..++...+..
T Consensus 4 GkfDG~-----~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 4 GKFDGV-----HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EEeCCC-----ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 345555 5678888899999998653211 1122222 23456666443 37888899999999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~ 252 (724)
||+.....+..-+.+.+. .......+.+.+..++++|.+-.|+-+|
T Consensus 78 YDV~~N~d~Fyke~~DGv--n~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 78 YDVENNSDLFYKEVPDGV--NAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred EEcccCchhhhhhCccce--eEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 999977666544433321 0011112222344555555555555444
No 463
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.14 E-value=4.5 Score=44.55 Aligned_cols=129 Identities=17% Similarity=0.288 Sum_probs=87.0
Q ss_pred hcCChHHHHHHHHHHHccChh-HHHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCC-CChhhHHHH
Q 004914 579 NHNLHDAIREKVVQLMLLDCK-RAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPH-AGKDFHDMQ 656 (724)
Q Consensus 579 ~~~l~~~~~~~~~~L~~~~~~-~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~-~~~~~~~~l 656 (724)
+..+.+++.+-++-.|.++.+ +|+++|++-+ .++.+++.... ++-.-...||..+..--|. .+..+-..-
T Consensus 174 ~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve---~id~l~~~Vd~-----~n~~RvclYl~sc~~~lP~Pdd~~ll~~a 245 (878)
T KOG2005|consen 174 KADLLDLVQEIVPFHMKHNAEFEAIDLLMEVE---GIDLLLDYVDE-----HNYQRVCLYLTSCVPLLPGPDDVALLRTA 245 (878)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHhh---hHhHHHHHhhh-----hhHHHHHHHHHHHhhcCCCchhhHHHHHH
Confidence 345678888889999999865 6999999853 45666666553 2223344899998776543 344588888
Q ss_pred HHHHHhcc--hhhhHHHhhhcCCCCHHHHHHHHhcCCCchhHHHHHhccCCh-----HHHHHHHHH
Q 004914 657 VELYADYD--LKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNT-----KHALAVIIN 715 (724)
Q Consensus 657 v~Ly~~~~--~~~ll~fL~~~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~-----~~Al~l~~~ 715 (724)
..+|.+|+ ++.|.--++-...=-+.....-|...-+..-|+|+++|.|-+ ++|++=|++
T Consensus 246 ~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~s 311 (878)
T KOG2005|consen 246 LKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILS 311 (878)
T ss_pred HHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHc
Confidence 88998876 344444444443223455555666677999999999999865 355665554
No 464
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=82.05 E-value=88 Score=34.62 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHH---HHHcC
Q 004914 427 DEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALV---ALATN 503 (724)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~---~~l~~ 503 (724)
..+...-+..+..+|+|+.|..+|...+.. +...+ . +.-......+. .++-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------l~k~~-----------------G-~~hl~va~~l~~~a~~y~- 252 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------LEKTS-----------------G-LKHLVVASMLNILALVYR- 252 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------HHHcc-----------------C-ccCHHHHHHHHHHHHHHH-
Confidence 345555667788899999999988776662 00110 0 12122222222 2222
Q ss_pred CccHHHHHHHhhcCCCCccChHHHHHHHhhhh-ccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 504 PSFHKYLLSTVKSWPPVIYSALPVISAIEPQL-NSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 504 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
+..+|.+.+... +.+++..++-+ ......+..+..|+.+|-..|++++|-.++-+
T Consensus 253 --~~~k~~eAv~ly-------~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 253 --SLGKYDEAVNLY-------EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred --HhccHHHHHHHH-------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 223455555433 22223222222 33456678899999999999999999887654
No 465
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.62 E-value=5.7 Score=44.60 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCCccccCCCceEEEEecCCEEEEEeCC----CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC-----C
Q 004914 46 GSLPSLLANDAASCVAVAERMIALGTHA----GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-----S 116 (724)
Q Consensus 46 ~~~~~~~~~~~i~~~s~~~~~la~g~~d----g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-----~ 116 (724)
|.+..+..+..+.||--|..+.++|... ..+++|...|..-..-.+.++.=..++|-|+|..++|-+.|| .
T Consensus 195 G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ 274 (1243)
T COG5290 195 GDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSES 274 (1243)
T ss_pred cceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcce
Confidence 3344444444455666566666666542 346667666554222223333445589999999999988665 3
Q ss_pred EEEEeccC---Cce-EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 117 VVINSLFT---DEK-MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 117 v~iwd~~~---~~~-~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
|..+..++ |+. ........+..++|+-. +..++. ...+.+.+|.
T Consensus 275 ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~-----s~vlav-~~~n~~~lwt 322 (1243)
T COG5290 275 VIFFERNGLRHGEFDLRVGCDEKAFLENWNLL-----STVLAV-AEGNLLKLWT 322 (1243)
T ss_pred EEEEccCCcccCCccccCCchhhhhhhhhhHH-----HHHHHH-hhcceEEEEE
Confidence 55554433 333 22333336677777765 333333 3445788874
No 466
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.54 E-value=9.9 Score=33.81 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
-+-.+++|+|++|.+..+.-.. .+..-......-++.+|.+++|++|...+-+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3668999999999988764322 1222234555566778899999999987666666
No 467
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.44 E-value=0.94 Score=51.19 Aligned_cols=64 Identities=25% Similarity=0.434 Sum_probs=48.2
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEE-----------EcCCCCEEEEEeCCCCEEEEecc
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLS-----------FDVDGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~-----------~s~~g~~l~s~~~Dg~v~iwd~~ 123 (724)
+.++.-+++.|..+|.|++.+.+......+++|...+++++ .+|||+.++.++.||.++.|.+.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 34466789999999999998876555456667877776654 47888888888888888888764
No 468
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.10 E-value=64 Score=32.42 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=70.3
Q ss_pred EcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE--eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEE
Q 004914 89 FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF--DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (724)
Q Consensus 89 ~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~--~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (724)
+.+-...|.++.|+|+.+.|++....+.-.||=...|++. ++ .+-.-..++.+..+ +++.++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-----n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-----NQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-----CEEEEEehhcceEEEE
Confidence 3444556999999999999988888887777755556654 33 33335556777666 5566666677777777
Q ss_pred ecccCCcc------ceEec---cCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 166 SKKWLGYR------DQVLH---SGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 166 ~~~~~~~~------~~~l~---~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
...-++.. ...+. ..+....+++|. ...+..+ .-.-+.||.+.
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 55432211 11111 113446789998 3444444 55566676665
No 469
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.29 E-value=1.2e+02 Score=35.21 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=45.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-----CC-----Ce-e--EEE--------cCCccceeEEEEcCC---CCEEEEEeCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-----LG-----NQ-V--KEF--------PAHTAAVNDLSFDVD---GEYVGSCSDD 114 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-----~~-----~~-~--~~~--------~~h~~~V~~l~~s~~---g~~l~s~~~D 114 (724)
.++++|+.+|..+..|...+.=. +| .. + +++ ..+...|..+.|+|. +.+|+.-..|
T Consensus 91 ~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsd 170 (717)
T PF10168_consen 91 SLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSD 170 (717)
T ss_pred EECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecC
Confidence 46778999988888775443211 11 11 1 111 134468899999996 5789999999
Q ss_pred CCEEEEeccC
Q 004914 115 GSVVINSLFT 124 (724)
Q Consensus 115 g~v~iwd~~~ 124 (724)
+++++||+..
T Consensus 171 n~lR~y~~~~ 180 (717)
T PF10168_consen 171 NTLRLYDISD 180 (717)
T ss_pred CEEEEEecCC
Confidence 9999999975
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.96 E-value=60 Score=31.41 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=70.1
Q ss_pred cceeEEEEcCCCCEEEEEeCC---------CCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEE
Q 004914 94 AAVNDLSFDVDGEYVGSCSDD---------GSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~D---------g~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (724)
.+.++-..+|+|++++-.-.| |.++.|-........+..-.--++++|+.+ .....++-+.+-.|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d----~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD----AKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccccc----CcEEEEEccCceEEee
Confidence 456666779999985543333 334444432221111221124467888877 2234455566666766
Q ss_pred EecccCC----ccceEec--c---CCCC-e--EEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCc
Q 004914 165 NSKKWLG----YRDQVLH--S---GEGP-V--HVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPH 231 (724)
Q Consensus 165 ~~~~~~~----~~~~~l~--~---~~~~-V--~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~ 231 (724)
|+-+..+ ++..++. . .+.+ - .+|.-.|.+.++. +.++|...|..+|+.+..+..|.. .+.+
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~------qits 258 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP------QITS 258 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC------ceEE
Confidence 7633221 1111111 1 0111 1 1222236655554 888999999999999998877742 2556
Q ss_pred eee
Q 004914 232 LVW 234 (724)
Q Consensus 232 l~~ 234 (724)
.+|
T Consensus 259 ccF 261 (310)
T KOG4499|consen 259 CCF 261 (310)
T ss_pred EEe
Confidence 666
No 471
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=79.75 E-value=35 Score=33.28 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHhcccHHHHHHHHHhcCC--Cc-hhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG--RS-ELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~--~~-~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+++.|+|++|+...+.... +. ..........+..++..++|++|...+.+.+...+
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 567899999999998764322 11 11234556667889999999999998888876543
No 472
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.62 E-value=94 Score=33.46 Aligned_cols=54 Identities=17% Similarity=0.024 Sum_probs=30.1
Q ss_pred EEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEe
Q 004914 108 VGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 108 l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
|..-+.||.+.+++-+.-....+-... -...+++.|. ...|++++.+..+..|.
T Consensus 148 IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~-----tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 148 ICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPR-----TDSFVTASSSWTLECYK 202 (418)
T ss_pred EEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeec-----CCEEEEecCceeEEEec
Confidence 444455555555554432221111112 3344566666 67889988888888774
No 473
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=79.00 E-value=29 Score=36.21 Aligned_cols=164 Identities=19% Similarity=0.090 Sum_probs=98.0
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc---C--------hhhHHHHHHH
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG---S--------ASAWERWVFH 467 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~---~--------~~~we~~i~~ 467 (724)
+.+.++.+++|+.|.+-...-....-.-.++.+...+.++..|+|.+.-.+.+++-.. + ...|+-+...
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 4577899999999997765433211123457788888899999999998877764431 1 1244444455
Q ss_pred HhhcCCCCccccc---CcCCCCCCCHHHHHHHHHHHHcCCccHHH----------------HHHHhhcCCCCccChHHHH
Q 004914 468 FAHLRQLPVLVPY---MPTENPRLRDTAYEVALVALATNPSFHKY----------------LLSTVKSWPPVIYSALPVI 528 (724)
Q Consensus 468 F~~~~~l~~L~~~---l~~~~~~l~~~~~~~~L~~~l~~~~~~~~----------------~~~~i~~~~~~l~~~~~~~ 528 (724)
-.+.+....|... +|.+. +-++.+.-.+-..++.- .+++. +...+-..+ .=|....+
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l-~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~--~~d~~~l~ 314 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRL-GDHDEAQEIIEDALKRQWDPRLCRLIPRLR--PGDPEPLI 314 (400)
T ss_pred HhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHc-CChHHHHHHHHHHHHhccChhHHHHHhhcC--CCCchHHH
Confidence 5555555555443 34431 11122222222222221 12222 333333222 12356777
Q ss_pred HHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004914 529 SAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYA 566 (724)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~ 566 (724)
+.++..++.....+.+...|..||.+++.|.+|=.++-
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888887777778899999999999999999976654
No 474
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=79.00 E-value=23 Score=33.82 Aligned_cols=55 Identities=13% Similarity=-0.119 Sum_probs=37.6
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++..|+|++|+..++................+.-++..|++++|.+.+.+.+.
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5577899999999988754321111123445566777888999999987776664
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.94 E-value=10 Score=36.82 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=23.4
Q ss_pred EcCCCCEEEEEeCCCCEEEEeccCCce
Q 004914 101 FDVDGEYVGSCSDDGSVVINSLFTDEK 127 (724)
Q Consensus 101 ~s~~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (724)
+..+++++++.+.+|.+++||+.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 456788999999999999999998665
No 476
>PRK13684 Ycf48-like protein; Provisional
Probab=78.66 E-value=89 Score=32.63 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=61.1
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeC----CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEE
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY----HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~----~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (724)
-...++++.+.++++.++.+ ..|.+++=+.+.+...+ ... .. .+.++++.|+ +..++ ++.+|.+..-
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~-----~~~~~-~G~~G~v~~S 285 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP-----GEIWA-GGGNGTLLVS 285 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCC-----CCEEE-EcCCCeEEEe
Confidence 34578999999999876654 56776543344444322 111 12 5788899887 55554 4456766542
Q ss_pred ecccCCccceEecc---CCCCeEEEEEe--CCEEEEEcCCcEEEEE
Q 004914 166 SKKWLGYRDQVLHS---GEGPVHVVKWR--TSLIAWANDAGVKVYD 206 (724)
Q Consensus 166 ~~~~~~~~~~~l~~---~~~~V~~l~~~--~~~la~~~d~~i~i~d 206 (724)
.+ .+........ -......+.|. +..++++..|.|-.|+
T Consensus 286 -~d-~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 286 -KD-GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred -CC-CCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 21 2333333322 12346666666 4667777777776665
No 477
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=78.44 E-value=3 Score=33.31 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=18.4
Q ss_pred HHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHh
Q 004914 403 LLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAAS 448 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~ 448 (724)
+++.|+|++|+.+++. ......-..+...++.-++.-|+|++|.+
T Consensus 35 ~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 35 YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555544 11000111233333444555555555554
No 478
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.03 E-value=45 Score=35.24 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 526 PVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
..|..+-+....-...+....-|+.||.+.|+-..|++|+-.-
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds 618 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence 3333333433444556677788999999999999999998764
No 479
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=77.82 E-value=43 Score=29.90 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHhcccHHHHHHHH----HhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 403 LLEHGWHEKALAAV----EAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 403 ll~~~~~~~Al~~~----~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
.+..+....+-..+ +..+... .-.......+..++..|+|++|...+..++..
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 34566666665533 3333221 22334455678889999999999987777764
No 480
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=77.81 E-value=22 Score=39.11 Aligned_cols=55 Identities=18% Similarity=0.054 Sum_probs=40.2
Q ss_pred HHHHhcccHHHHHHHHHhcCCC--------chhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGR--------SELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~--------~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+..+|+|+.|..+++..... .-.+......++..+...++|.+|+.+|.+.+.
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6688999999999998754321 122344455688899999999999988776543
No 481
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=77.68 E-value=11 Score=38.26 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 543 ALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
.+...++..|...|++++|+.++-+.
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccc
Confidence 37778888888888888888887763
No 482
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.18 E-value=79 Score=31.20 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=90.5
Q ss_pred hhHHHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCC
Q 004914 398 DHIAWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQ 473 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~ 473 (724)
....-.+++|+|++|....+.- +.... .+++...-+...+.+++|+.|....-+++..-
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---------------- 101 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---------------- 101 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----------------
Confidence 3556788999999999886643 22222 24455555666788999999976544444311
Q ss_pred CCcccccCcCCCCCCCHHHHHHHHHHHHcCC----------ccHHHHHHHhhcCCCCccChHHHH--HHHhhhhccCcch
Q 004914 474 LPVLVPYMPTENPRLRDTAYEVALVALATNP----------SFHKYLLSTVKSWPPVIYSALPVI--SAIEPQLNSSSMT 541 (724)
Q Consensus 474 l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~----------~~~~~~~~~i~~~~~~l~~~~~~~--~~~~~~~~~~~~~ 541 (724)
|+ +|..+-..|=..|..+..-. .-...|.++|+++|..-|-.++-. ..+.+++
T Consensus 102 --------P~-~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L------ 166 (254)
T COG4105 102 --------PT-HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL------ 166 (254)
T ss_pred --------CC-CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH------
Confidence 11 12223333333333221100 012568889999998888755433 3444544
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHHHHHHHHH
Q 004914 542 DALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLM 594 (724)
Q Consensus 542 ~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~L~ 594 (724)
+.+.-..+.+|.+.|.|.-|..-. -.+++.++....+.+-+..+.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~--------~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRF--------EEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHH--------HHHHhccccccchHHHHHHHH
Confidence 445557778999999999988743 334444554444444444443
No 483
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.14 E-value=1.5e+02 Score=34.49 Aligned_cols=70 Identities=21% Similarity=0.478 Sum_probs=48.1
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec-ccC--C-----cc---ceEe--------ccCCCCeEEEEEeC----
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-KWL--G-----YR---DQVL--------HSGEGPVHVVKWRT---- 191 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-~~~--~-----~~---~~~l--------~~~~~~V~~l~~~~---- 191 (724)
.|..|.++|+ |..++..|..|.+.+.-. +|. + .. .+++ ......|..+.|++
T Consensus 86 ~v~~i~~n~~-----g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 86 EVHQISLNPT-----GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eEEEEEECCC-----CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 7889999999 898888888887666532 232 1 11 1111 12345788999992
Q ss_pred --CEEEEEcCCcEEEEEcCC
Q 004914 192 --SLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 192 --~~la~~~d~~i~i~d~~~ 209 (724)
.+++-.+|+.+|+||+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCeEEEEecCCEEEEEecCC
Confidence 466667999999999974
No 484
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=76.74 E-value=33 Score=32.77 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+...|+|++|+...+........-..+...++..++..|+|++|.+.+.+.+.
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 35677899999999987754331111224556667778899999999997777654
No 485
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.92 E-value=22 Score=37.45 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=68.1
Q ss_pred HHHhcCCHHHHHHHHHHcCCchhhHHHHhcCChHHHH--HHHHHHHccChhHHHHHhhhcCCCCCh-HHHHHHHh----c
Q 004914 551 LYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIR--EKVVQLMLLDCKRAVSLLIQNKDLITP-SEVVTQLL----N 623 (724)
Q Consensus 551 ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~l~~~~~--~~~~~L~~~~~~~~~~ll~~~~~~~~~-~~vi~~l~----~ 623 (724)
-|.+.|+-++||.|++++.- |-..+. +.++ ..+-+|+ .+|.++++++++-...+|- ..|++.|- +
T Consensus 533 t~e~~~~ldeald~f~klh~------il~nn~-evl~qianiye~l-ed~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHA------ILLNNA-EVLVQIANIYELL-EDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHH------HHHhhH-HHHHHHHHHHHHh-hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 47889999999999998642 000000 1111 1111233 4799999999985444431 23444432 3
Q ss_pred ccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-chhhhHHHhhhcCCCCHHHHHHHHhcCCCch-hHHHHHh
Q 004914 624 ARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-DLKMLLPFLRSSQHYTLEKAYEICVKRDLLR-EQVFILG 701 (724)
Q Consensus 624 ~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~-~~~~ll~fL~~~~~y~~~~al~~c~~~~~~~-e~v~Ll~ 701 (724)
++.++ ..+++.|=.+-.. | ..-+..+-|...|.+- -.+|-..|+++.....+ ...-|. -.+-.+.
T Consensus 605 egdks--qafq~~ydsyryf--p-~nie~iewl~ayyidtqf~ekai~y~ekaaliqp--------~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 605 EGDKS--QAFQCHYDSYRYF--P-CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP--------NQSKWQLMIASCFR 671 (840)
T ss_pred ccchh--hhhhhhhhccccc--C-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc--------cHHHHHHHHHHHHH
Confidence 33211 1222223111111 1 1223344455555421 13344455544321111 111111 1234577
Q ss_pred ccCChHHHHHHHHH
Q 004914 702 RMGNTKHALAVIIN 715 (724)
Q Consensus 702 k~g~~~~Al~l~~~ 715 (724)
|.|+|.+|+.++-+
T Consensus 672 rsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKD 685 (840)
T ss_pred hcccHHHHHHHHHH
Confidence 89999999988754
No 486
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=75.89 E-value=2e+02 Score=35.12 Aligned_cols=56 Identities=9% Similarity=-0.094 Sum_probs=42.2
Q ss_pred HHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChh
Q 004914 403 LLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~ 459 (724)
+..+|+|.+|+...+.... .++. ..+...-+..++..|++++|...+.+.+..++.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~ 110 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG 110 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 4456999999998876543 2222 456678888899999999999998888876553
No 487
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=75.78 E-value=86 Score=33.08 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCeeEEEcCCccce-----eEEEEcCCCCEEEEEeC-CCC--EEEEeccCCceEEEeCCC--CeeEEEeCCCCCCCCCC
Q 004914 82 LGNQVKEFPAHTAAV-----NDLSFDVDGEYVGSCSD-DGS--VVINSLFTDEKMKFDYHR--PMKAISLDPDYTRKMSR 151 (724)
Q Consensus 82 ~~~~~~~~~~h~~~V-----~~l~~s~~g~~l~s~~~-Dg~--v~iwd~~~~~~~~~~~~~--~v~~v~~~p~~~~~~~~ 151 (724)
+|..+..+..+.+.- +.=+|.++|+.|+.++. ||. +.+.|+.+++...+.... ...+..++|+ ++
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~-----~~ 93 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD-----DR 93 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT-----SS
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC-----CC
Confidence 455555554433222 22367889987665554 665 555688888888876543 3335667777 46
Q ss_pred EEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe----CCEEEEE----cC-------------------CcEEE
Q 004914 152 RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWA----ND-------------------AGVKV 204 (724)
Q Consensus 152 ~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~----~~~la~~----~d-------------------~~i~i 204 (724)
.++-...+..+.-.+.. ......++...++.+-...|. +..++.. .| +.|.-
T Consensus 94 ~~~Yv~~~~~l~~vdL~-T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLD-TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEETTTEEEEEETT-T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEECCCeEEEEECC-cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 65443333455444443 223233333344444445554 3444332 11 12444
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE----eCCe-EEEEEEeeCCC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG----WGTY-IKIASIKTNQS 258 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g----~d~~-i~vw~~~~~~~ 258 (724)
.|+.+|+....+... .+...+.+ .++..++-| |+.. -|+|-+++..+
T Consensus 173 idl~tG~~~~v~~~~-------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 173 IDLKTGERKVVFEDT-------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EETTT--EEEEEEES-------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred EECCCCceeEEEecC-------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 556666544433322 13334444 356677777 4443 48898886553
No 488
>PHA03098 kelch-like protein; Provisional
Probab=75.58 E-value=63 Score=36.34 Aligned_cols=146 Identities=15% Similarity=0.070 Sum_probs=67.8
Q ss_pred EEEecCCEEEEEeCC-----CeEEEEecCCCeeEEEcCC-ccceeEEEEcCCCCEEEEEeCC------CCEEEEeccCCc
Q 004914 59 CVAVAERMIALGTHA-----GTVHILDFLGNQVKEFPAH-TAAVNDLSFDVDGEYVGSCSDD------GSVVINSLFTDE 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~d-----g~I~i~d~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~~~D------g~v~iwd~~~~~ 126 (724)
+...+++..++|+.+ ..+..||...+.-.....- ...-......-++...+.||.+ ..+..||..++.
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 345577788888865 3466777744332222110 0000111112356667777632 357788887755
Q ss_pred eEEEe---CCCCeeEEEeCCCCCCCCCCEEEEecCCC--------eEEEEecccCCccceEecc---CCCCeEEEEEeCC
Q 004914 127 KMKFD---YHRPMKAISLDPDYTRKMSRRFVAGGLAG--------HLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTS 192 (724)
Q Consensus 127 ~~~~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~dg--------~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~ 192 (724)
..... ..+.-.+++.. + +..++.|+.++ .+..|+... .+...+.. .......+...+.
T Consensus 418 W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 418 WSKGSPLPISHYGGCAIYH-D-----GKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTELSSLNFPRINASLCIFNNK 489 (534)
T ss_pred eeecCCCCccccCceEEEE-C-----CEEEEECCccCCCCCcccceEEEecCCC--CceeeCCCCCcccccceEEEECCE
Confidence 43322 11211222222 2 46777776532 255554321 11111111 1111222333466
Q ss_pred EEEEEc-C-----CcEEEEEcCCCce
Q 004914 193 LIAWAN-D-----AGVKVYDAANDQR 212 (724)
Q Consensus 193 ~la~~~-d-----~~i~i~d~~~~~~ 212 (724)
+.+.|. + +.+.+||..+.+-
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555542 2 3578888876654
No 489
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.86 E-value=1.1e+02 Score=31.72 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred ceEEEEecCCEEEEE--eCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceE----
Q 004914 56 AASCVAVAERMIALG--THAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKM---- 128 (724)
Q Consensus 56 ~i~~~s~~~~~la~g--~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~---- 128 (724)
....++.+|+++.+- +-.-+|.|.|+..+.+..--.-.+-..-.-+.+++ +.+.+.||.+.-..+.. |+..
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~--F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG--FSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE--EEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCc--eEEEecCCceEEEEECCCCCEeEeec
Q ss_pred -EEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-------------CCCCeEEEEEe--
Q 004914 129 -KFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-------------GEGPVHVVKWR-- 190 (724)
Q Consensus 129 -~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-------------~~~~V~~l~~~-- 190 (724)
.+.... .+..-++... +..++--+..|.|+-.+.. +........ ..|.-.-++++
T Consensus 176 ~~F~~~~dp~f~~~~~~~~-----~~~~~F~Sy~G~v~~~dls--g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRD-----GGRLYFVSYEGNVYSADLS--GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EESSTTTS-B-S--EEETT-----TTEEEEEBTTSEEEEEEET--TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred cccCCCCcccccccceECC-----CCeEEEEecCCEEEEEecc--CCcccccCcccccCccccccCcCCcceeeeeeccc
Q ss_pred -CCEEEEEcCCc----------EEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE---eCCeEEEEEEee
Q 004914 191 -TSLIAWANDAG----------VKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG---WGTYIKIASIKT 255 (724)
Q Consensus 191 -~~~la~~~d~~----------i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g---~d~~i~vw~~~~ 255 (724)
+.+.+....+. |-+||+.+++++..++... .+.++.. .+..-++.+ .++.+.+||..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-------EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Q ss_pred CCCCCCCCccccCCCeEE
Q 004914 256 NQSNVANGTYRHVGMNQV 273 (724)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (724)
++...........|...+
T Consensus 322 Gk~~~~~~~lG~~~~l~~ 339 (342)
T PF06433_consen 322 GKLVRSIEQLGETPTLIL 339 (342)
T ss_dssp --EEEEE---SSS--EEE
T ss_pred CcEEeehhccCCCceEEE
No 490
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.35 E-value=67 Score=33.90 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=45.4
Q ss_pred EEEecCCEEEEEeC-CC--eEEEEecCCCeeEEEcCCcc-ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCC
Q 004914 59 CVAVAERMIALGTH-AG--TVHILDFLGNQVKEFPAHTA-AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~-dg--~I~i~d~~~~~~~~~~~h~~-~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~ 133 (724)
||..+|+.|++++. +| .+.+.|+....+..+..+.+ ...+..++|+++.++-...+..++--|+.+.+.. .+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 78888986666554 44 56667777777767765432 2335677899888877766678888899886653 34444
Q ss_pred C-CeeEEEeC
Q 004914 134 R-PMKAISLD 142 (724)
Q Consensus 134 ~-~v~~v~~~ 142 (724)
. .+-...|.
T Consensus 122 ~~~~g~gt~v 131 (386)
T PF14583_consen 122 DDWKGYGTWV 131 (386)
T ss_dssp TTEEEEEEEE
T ss_pred ccccccccee
Confidence 4 34334553
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.33 E-value=20 Score=40.41 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.9
Q ss_pred cCCEEEEEeCCCeEEEEecCC-----CeeEE--EcC--------------------CccceeEEEEcC----CCCEEEEE
Q 004914 63 AERMIALGTHAGTVHILDFLG-----NQVKE--FPA--------------------HTAAVNDLSFDV----DGEYVGSC 111 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~-----~~~~~--~~~--------------------h~~~V~~l~~s~----~g~~l~s~ 111 (724)
++..++++..||.+..+.... ..... +.. ....+..+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 788899999999988887632 11111 111 123455666666 67899999
Q ss_pred eCCCCEEEEeccCCceE
Q 004914 112 SDDGSVVINSLFTDEKM 128 (724)
Q Consensus 112 ~~Dg~v~iwd~~~~~~~ 128 (724)
+.|+++|+||+.++.+.
T Consensus 237 ~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCL 253 (547)
T ss_dssp ETTSEEEEEETTTTCEE
T ss_pred eCCCeEEEEECCCCeEE
Confidence 99999999999998764
No 492
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.64 E-value=1.4e+02 Score=32.25 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=77.2
Q ss_pred EEEEecCCEEEEEe-CCC----eEEEEec-CCCeeE-EEcCCccceeEEEEcCCCCEEEEEeCCC-----------CEEE
Q 004914 58 SCVAVAERMIALGT-HAG----TVHILDF-LGNQVK-EFPAHTAAVNDLSFDVDGEYVGSCSDDG-----------SVVI 119 (724)
Q Consensus 58 ~~~s~~~~~la~g~-~dg----~I~i~d~-~~~~~~-~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-----------~v~i 119 (724)
.+++|+|+++|.+- ..| .++++|+ +|..+. .+... .-..+.|.++|+.|+....+. .|+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 35788999998773 334 5999999 454332 22221 123389999999876665433 2777
Q ss_pred EeccCCc---eEEEeCCC--C-eeEEEeCCCCCCCCCCEEEEecCCC-e---EEEEecccC---CccceEeccC-CCCeE
Q 004914 120 NSLFTDE---KMKFDYHR--P-MKAISLDPDYTRKMSRRFVAGGLAG-H---LYLNSKKWL---GYRDQVLHSG-EGPVH 185 (724)
Q Consensus 120 wd~~~~~---~~~~~~~~--~-v~~v~~~p~~~~~~~~~l~~g~~dg-~---v~l~~~~~~---~~~~~~l~~~-~~~V~ 185 (724)
|.+.+.. ...+.... . ...+..+++ +++++.....+ . +.+.+..-. ......+... .+...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-----~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-----GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-----SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCc-----ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 8887643 23444433 3 567888888 67766543332 2 333333211 1233444433 34344
Q ss_pred EEEEeC-CEEEEEcC----CcEEEEEcCCCc
Q 004914 186 VVKWRT-SLIAWAND----AGVKVYDAANDQ 211 (724)
Q Consensus 186 ~l~~~~-~~la~~~d----~~i~i~d~~~~~ 211 (724)
.+...+ .+.+.+++ +.|...++....
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 454454 45555532 345555665443
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=73.36 E-value=77 Score=36.22 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=53.6
Q ss_pred EEeCCCCCCCCCCEEEEecCCCe-----EEEEecccCCc-cceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCC
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGH-----LYLNSKKWLGY-RDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAAND 210 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~-----v~l~~~~~~~~-~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~ 210 (724)
++|-|. |..+++-+.||. |+++.++-... ....-.+.+..+..++|+ ...++.+..+.+.+|-..+-
T Consensus 252 LSWkpq-----gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 252 LSWKPQ-----GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred cccccC-----CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce
Confidence 788888 788888665553 55544421100 010111223456778888 46667777788899976543
Q ss_pred ceEEEecCCCCCCCCCCCCCceeec--CCCeEEEEeCCeEEEEEEe
Q 004914 211 QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIGWGTYIKIASIK 254 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~ 254 (724)
..- +......+ -+.-+.|. ....+....++.|....+.
T Consensus 327 hWY--LK~e~~ip----~~s~vkwhpe~~nTl~f~d~~~I~~V~f~ 366 (1243)
T COG5290 327 HWY--LKVERQIP----GISYVKWHPEEKNTLLFRDGERILRVFFS 366 (1243)
T ss_pred EEE--EEEeecCC----CcceeeeccccCcEEEEecCCeEEEEEee
Confidence 221 11111111 13345672 3345555555555444443
No 494
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.04 E-value=1.7e+02 Score=32.98 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
+-..|.-.|+..|.+.|.+++|-++|-+
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445777899999999999999998876
No 495
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=73.01 E-value=1.7e+02 Score=33.09 Aligned_cols=198 Identities=13% Similarity=0.163 Sum_probs=99.8
Q ss_pred ceeEEEEcCCCCEEEEEe-----CCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEE-EEecCCCe--EEEEe
Q 004914 95 AVNDLSFDVDGEYVGSCS-----DDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRF-VAGGLAGH--LYLNS 166 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~-----~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l-~~g~~dg~--v~l~~ 166 (724)
.+-.++.|||++++|-+- ..-++++-|+.++....-.......+++|.++ ++.+ .+-..++. -++|.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d-----~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAAD-----GKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecC-----CCeEEEEEEcCCCCcceEEE
Confidence 456678899999877543 33468889998887655444445678899998 4444 44433332 33443
Q ss_pred cccCC--ccceEeccCCCCeEEEEEe----CCEEEEE-c---CCcEEEEEcCCCce--EEEecCCCCCCCCCCCCCceee
Q 004914 167 KKWLG--YRDQVLHSGEGPVHVVKWR----TSLIAWA-N---DAGVKVYDAANDQR--ITFIERPRGSPRPELLLPHLVW 234 (724)
Q Consensus 167 ~~~~~--~~~~~l~~~~~~V~~l~~~----~~~la~~-~---d~~i~i~d~~~~~~--~~~i~~~~~~~~~~~~~~~l~~ 234 (724)
....+ .....+..-..+-.-+... +.+|+.+ + .+.+++.+...... ....+++.+ +...+. -
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g---~eY~~e---h 278 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG---VEYSVE---H 278 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC---cEEeee---e
Confidence 33222 2333333322232223222 4555544 2 33477777664332 222222221 111111 1
Q ss_pred cCCCeEEEE-eCC-eEEEEEEeeCCCCCCCCccccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCccccc
Q 004914 235 QDDTLLVIG-WGT-YIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFS 312 (724)
Q Consensus 235 ~~~~~l~~g-~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~ 312 (724)
..+..++-. .++ ..+++.... .. .....+..-....+..+.++..+++.++++...
T Consensus 279 ~~d~f~i~sN~~gknf~l~~ap~-~~----------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~----------- 336 (682)
T COG1770 279 GGDRFYILSNADGKNFKLVRAPV-SA----------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQ----------- 336 (682)
T ss_pred cCcEEEEEecCCCcceEEEEccC-CC----------ChhcCeeeeccCCCceeeeeeeeccEEEEEecc-----------
Confidence 122223333 333 344433222 00 111223334455678888999999888888653
Q ss_pred CCCCcccCCCCCCeEEEeccCC
Q 004914 313 STLPSRQGNAQRPEVRIVTWNN 334 (724)
Q Consensus 313 ~~~~~~~~~~~~~~l~iv~~~~ 334 (724)
...|.++|.+.++
T Consensus 337 ---------~glp~v~v~~~~~ 349 (682)
T COG1770 337 ---------EGLPRVVVRDRKT 349 (682)
T ss_pred ---------cCCceEEEEecCC
Confidence 2357777777753
No 496
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.77 E-value=31 Score=35.68 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCC
Q 004914 394 RDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQ 473 (724)
Q Consensus 394 ~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~ 473 (724)
.+..+-|..++..|+...|-.+.+...-+.. .-+..-+..|...++|++--++... .+++--|+.+|...++.++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dk---rfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDK---RFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHH---HHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Q ss_pred CCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHH
Q 004914 474 LPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYV 553 (724)
Q Consensus 474 l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~ 553 (724)
-..-..|||.- -++.-..+|.
T Consensus 253 ~~eA~~yI~k~-----------------------------------------------------------~~~~rv~~y~ 273 (319)
T PF04840_consen 253 KKEASKYIPKI-----------------------------------------------------------PDEERVEMYL 273 (319)
T ss_pred HHHHHHHHHhC-----------------------------------------------------------ChHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHcCCchhhHHHHhc
Q 004914 554 IDGHYEKAFSLYADLMKPYIFDFIENH 580 (724)
Q Consensus 554 ~~~~~~~al~~~~~~~~~~~~~~i~~~ 580 (724)
+.|+|.+|.+.-.+.++.+.+..|.+.
T Consensus 274 ~~~~~~~A~~~A~~~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 274 KCGDYKEAAQEAFKEKDIDLLKQILKR 300 (319)
T ss_pred HCCCHHHHHHHHHHcCCHHHHHHHHHH
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=72.37 E-value=7.8 Score=43.99 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=89.3
Q ss_pred EEEEEeCCCCEEEEeccC--CceEEE----eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEE----ecccCCccceE
Q 004914 107 YVGSCSDDGSVVINSLFT--DEKMKF----DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLN----SKKWLGYRDQV 176 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~--~~~~~~----~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~----~~~~~~~~~~~ 176 (724)
.+..|+.+|.+.++.... ++.... ..+.++.++.+++. .+..|.-||++-.+ +..|.+.....
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-------Slgagl~dgt~a~y~rap~gSwd~ep~~~ 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-------SLGAGLIDGTLAVYGRAPSGSWDGEPNIS 621 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-------ccccCccCCccccccCCCCCCCCCCCccc
Confidence 467788899999987662 222221 22226777776664 45666777777666 34466666666
Q ss_pred eccCCCCeEEEEEeCCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEE-EEeCCeEEEEEEe
Q 004914 177 LHSGEGPVHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLV-IGWGTYIKIASIK 254 (724)
Q Consensus 177 l~~~~~~V~~l~~~~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~-~g~d~~i~vw~~~ 254 (724)
++....||.+.++...++.++.+|.|.++...+.........+. .+...+.++...+....+ ...+..++.++..
T Consensus 622 ~~~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahq---ee~~~Vthm~~~~~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQ---EEAHSVTHMLYLDNGVWVAFASGDEERLFHTE 697 (925)
T ss_pred cccCCccccchhhhhceeeeecCCceEEEechhccccchhHHHH---hhcceEEEEEeeCCceEEEEcCCCEEEEeccc
Confidence 67788899999999898888899999999988765554433332 122345556554444433 3366667666443
No 498
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.89 E-value=49 Score=33.02 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=52.7
Q ss_pred EEEEEeCCCe-EEEEecCCCe-eEEEcCCccc--eeEEEEcCCCCEEEEEeCC-----CCEEEEeccCC--ceEEEeCCC
Q 004914 66 MIALGTHAGT-VHILDFLGNQ-VKEFPAHTAA--VNDLSFDVDGEYVGSCSDD-----GSVVINSLFTD--EKMKFDYHR 134 (724)
Q Consensus 66 ~la~g~~dg~-I~i~d~~~~~-~~~~~~h~~~--V~~l~~s~~g~~l~s~~~D-----g~v~iwd~~~~--~~~~~~~~~ 134 (724)
-++++-.-|+ ..+||.++.. ...+...++. --.=.|||||.+|...-.| |.|=|||.+.+ .+-.+..+.
T Consensus 82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G 161 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG 161 (366)
T ss_pred eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence 4455544444 3467774433 2222211110 1112589999988765443 67889999863 344567777
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEec
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
....+.|.++ |+.++...
T Consensus 162 iGpHev~lm~D-----Grtlvvan 180 (366)
T COG3490 162 IGPHEVTLMAD-----GRTLVVAN 180 (366)
T ss_pred cCcceeEEecC-----CcEEEEeC
Confidence 7888999999 88887764
No 499
>PRK10115 protease 2; Provisional
Probab=71.34 E-value=2.1e+02 Score=33.38 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=57.5
Q ss_pred cceeEEEEcCCCCEEEEEeC-CC----CEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCC------CeE
Q 004914 94 AAVNDLSFDVDGEYVGSCSD-DG----SVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLA------GHL 162 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~-Dg----~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~d------g~v 162 (724)
-.+..+.|+|+|++|+.+.. +| .+++-|+.++....-.....-..++|+++ ++.|+.+..+ ..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D-----~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWAND-----SWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeC-----CCEEEEEEecCCCCCCCEE
Confidence 35777899999998876543 33 58888988776322111111145899988 5655554332 235
Q ss_pred EEEecccCCccce-EeccCCCCeEEEEEe---CCEEEEE----cCCcEEEEEc
Q 004914 163 YLNSKKWLGYRDQ-VLHSGEGPVHVVKWR---TSLIAWA----NDAGVKVYDA 207 (724)
Q Consensus 163 ~l~~~~~~~~~~~-~l~~~~~~V~~l~~~---~~~la~~----~d~~i~i~d~ 207 (724)
..++..-...... ++....+...-..+. +.+++.. .++.+.+|+.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 5555441111223 333333333312222 4443322 2456888885
No 500
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=71.10 E-value=68 Score=38.95 Aligned_cols=58 Identities=10% Similarity=-0.185 Sum_probs=36.9
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChh
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~ 459 (724)
..+.+.|+|++|+...+........ .......+..++..|++++|.+.|...+...+.
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 3456899999999887754321110 112334566778888998888887776665433
Done!