Query 004914
Match_columns 724
No_of_seqs 523 out of 3440
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 99.9 7.9E-23 2.7E-27 220.9 32.7 190 55-256 109-328 (410)
2 2ynn_A Coatomer subunit beta'; 99.9 7.8E-23 2.7E-27 211.4 29.7 188 59-256 20-218 (304)
3 2ynn_A Coatomer subunit beta'; 99.9 2.2E-22 7.7E-27 208.0 30.8 188 59-257 62-261 (304)
4 3frx_A Guanine nucleotide-bind 99.9 4.7E-22 1.6E-26 207.1 32.8 185 59-256 24-228 (319)
5 1vyh_C Platelet-activating fac 99.9 2.5E-22 8.6E-27 216.9 28.0 191 55-257 151-371 (410)
6 3ow8_A WD repeat-containing pr 99.9 2.9E-22 9.8E-27 208.8 27.2 185 57-253 127-319 (321)
7 3ow8_A WD repeat-containing pr 99.9 4.7E-22 1.6E-26 207.2 28.6 190 55-256 81-280 (321)
8 3frx_A Guanine nucleotide-bind 99.9 3.2E-22 1.1E-26 208.4 27.0 188 59-254 72-266 (319)
9 1got_B GT-beta; complex (GTP-b 99.9 6.9E-22 2.4E-26 207.8 29.3 185 59-256 62-258 (340)
10 4gqb_B Methylosome protein 50; 99.9 8.5E-22 2.9E-26 207.1 29.0 189 56-256 84-290 (344)
11 4gqb_B Methylosome protein 50; 99.9 3.8E-22 1.3E-26 209.8 25.7 191 55-257 128-333 (344)
12 4ery_A WD repeat-containing pr 99.9 5.9E-22 2E-26 205.4 26.7 188 59-257 30-225 (312)
13 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.3E-21 8E-26 204.2 31.0 189 58-257 22-227 (345)
14 2pm7_B Protein transport prote 99.9 2E-21 6.7E-26 200.2 29.2 189 59-256 16-239 (297)
15 2pbi_B Guanine nucleotide-bind 99.9 3.8E-21 1.3E-25 203.3 31.9 190 55-256 65-272 (354)
16 2xzm_R RACK1; ribosome, transl 99.9 5.6E-21 1.9E-25 201.1 31.6 179 63-255 38-244 (343)
17 2hes_X YDR267CP; beta-propelle 99.9 7.8E-21 2.7E-25 198.8 32.4 192 55-257 15-232 (330)
18 4g56_B MGC81050 protein; prote 99.9 1.7E-21 6E-26 206.1 23.4 190 55-256 140-344 (357)
19 3iz6_a 40S ribosomal protein R 99.9 6.2E-21 2.1E-25 203.8 27.8 199 55-257 67-331 (380)
20 1got_B GT-beta; complex (GTP-b 99.9 5.7E-21 1.9E-25 200.8 26.1 185 55-252 144-340 (340)
21 2pbi_B Guanine nucleotide-bind 99.9 8.9E-21 3E-25 200.5 27.6 182 59-252 161-354 (354)
22 2hes_X YDR267CP; beta-propelle 99.9 5.4E-21 1.8E-25 200.1 25.2 191 55-256 59-281 (330)
23 3zwl_B Eukaryotic translation 99.9 1E-19 3.5E-24 192.5 34.9 187 59-256 39-250 (369)
24 4ery_A WD repeat-containing pr 99.9 5E-20 1.7E-24 190.9 31.5 188 59-256 72-269 (312)
25 2xzm_R RACK1; ribosome, transl 99.9 1.1E-20 3.8E-25 198.8 25.4 190 59-257 83-287 (343)
26 4aow_A Guanine nucleotide-bind 99.9 1.1E-19 3.6E-24 190.3 31.6 187 59-256 45-247 (340)
27 3fm0_A Protein CIAO1; WDR39,SG 99.9 4.1E-20 1.4E-24 194.6 28.5 192 55-257 62-285 (345)
28 1erj_A Transcriptional repress 99.9 8.2E-20 2.8E-24 196.0 31.3 191 59-257 71-289 (393)
29 3vl1_A 26S proteasome regulato 99.9 7.9E-20 2.7E-24 197.7 31.3 188 59-257 104-324 (420)
30 4e54_B DNA damage-binding prot 99.9 3.4E-21 1.2E-25 209.8 20.3 193 55-257 120-329 (435)
31 3k26_A Polycomb protein EED; W 99.9 3.8E-20 1.3E-24 195.7 27.8 187 59-257 76-320 (366)
32 3dm0_A Maltose-binding peripla 99.9 2.6E-20 9E-25 215.4 28.4 190 55-257 383-594 (694)
33 1erj_A Transcriptional repress 99.9 1.7E-20 6E-25 201.3 24.8 194 59-257 130-343 (393)
34 3jrp_A Fusion protein of prote 99.9 3.6E-20 1.2E-24 196.9 26.9 190 59-257 18-242 (379)
35 3dm0_A Maltose-binding peripla 99.9 3.9E-20 1.3E-24 214.0 29.3 188 59-257 437-634 (694)
36 3iz6_a 40S ribosomal protein R 99.9 4.4E-20 1.5E-24 197.2 26.9 190 59-256 164-376 (380)
37 2ymu_A WD-40 repeat protein; u 99.9 1.6E-20 5.3E-25 212.3 24.5 180 59-252 392-577 (577)
38 3bg1_A Protein SEC13 homolog; 99.9 2E-20 7E-25 194.4 23.3 188 59-255 20-247 (316)
39 4g56_B MGC81050 protein; prote 99.9 5.5E-20 1.9E-24 194.6 26.0 186 59-256 101-302 (357)
40 1k8k_C P40, ARP2/3 complex 41 99.9 1.6E-19 5.4E-24 191.5 29.4 187 59-257 15-235 (372)
41 2pm7_B Protein transport prote 99.9 6.5E-20 2.2E-24 188.7 25.1 197 55-255 54-285 (297)
42 1nr0_A Actin interacting prote 99.9 3.5E-20 1.2E-24 210.9 24.3 192 59-257 66-272 (611)
43 3f3f_A Nucleoporin SEH1; struc 99.9 1E-19 3.6E-24 190.3 26.1 190 59-257 18-339 (351)
44 1gxr_A ESG1, transducin-like e 99.9 5.7E-19 2E-23 184.3 31.3 184 59-256 58-256 (337)
45 3dwl_C Actin-related protein 2 99.8 7.9E-21 2.7E-25 202.4 17.3 187 59-258 18-239 (377)
46 3dw8_B Serine/threonine-protei 99.8 2.4E-19 8.3E-24 195.4 29.0 195 55-255 29-315 (447)
47 3v7d_B Cell division control p 99.8 3.3E-19 1.1E-23 195.7 30.1 191 57-257 125-343 (464)
48 4aez_A CDC20, WD repeat-contai 99.8 2E-18 6.9E-23 185.7 34.8 188 57-257 96-295 (401)
49 4h5i_A Guanine nucleotide-exch 99.8 7.7E-20 2.6E-24 194.1 23.2 188 57-256 138-344 (365)
50 1r5m_A SIR4-interacting protei 99.8 1.7E-19 5.9E-24 194.7 26.5 187 59-257 52-280 (425)
51 1p22_A F-BOX/WD-repeat protein 99.8 7.8E-19 2.7E-23 191.1 31.1 186 55-257 134-327 (435)
52 2ymu_A WD-40 repeat protein; u 99.8 4.2E-19 1.4E-23 200.5 30.0 181 59-253 351-537 (577)
53 2xyi_A Probable histone-bindin 99.8 1.9E-19 6.5E-24 195.7 25.8 188 59-256 135-354 (430)
54 1nr0_A Actin interacting prote 99.8 1E-18 3.5E-23 198.9 32.8 188 59-257 154-399 (611)
55 3mkq_A Coatomer beta'-subunit; 99.8 3.4E-19 1.1E-23 210.1 29.7 188 59-256 20-218 (814)
56 4aez_A CDC20, WD repeat-contai 99.8 9.9E-19 3.4E-23 188.1 30.4 187 55-256 135-337 (401)
57 1r5m_A SIR4-interacting protei 99.8 6.6E-19 2.3E-23 190.1 29.1 190 56-257 110-363 (425)
58 3vl1_A 26S proteasome regulato 99.8 2.6E-19 8.9E-24 193.6 25.3 193 58-257 62-280 (420)
59 1p22_A F-BOX/WD-repeat protein 99.8 7.1E-19 2.4E-23 191.4 28.1 187 55-258 174-368 (435)
60 3k26_A Polycomb protein EED; W 99.8 5E-19 1.7E-23 187.0 26.1 197 55-258 19-263 (366)
61 3ei3_B DNA damage-binding prot 99.8 2.4E-19 8.2E-24 191.5 23.9 190 55-258 74-285 (383)
62 3ei3_B DNA damage-binding prot 99.8 2.6E-19 9E-24 191.2 24.2 186 59-255 170-382 (383)
63 2ovr_B FBW7, F-BOX/WD repeat p 99.8 1.1E-18 3.9E-23 190.4 29.3 184 57-257 122-310 (445)
64 1gxr_A ESG1, transducin-like e 99.8 7E-19 2.4E-23 183.6 26.4 182 59-254 148-336 (337)
65 1sq9_A Antiviral protein SKI8; 99.8 1.2E-18 4E-23 186.8 28.0 197 55-257 17-269 (397)
66 1k8k_C P40, ARP2/3 complex 41 99.8 4.7E-19 1.6E-23 187.9 24.2 186 59-255 59-274 (372)
67 2aq5_A Coronin-1A; WD40 repeat 99.8 6.6E-19 2.3E-23 189.5 25.5 192 55-257 82-301 (402)
68 3lrv_A PRE-mRNA-splicing facto 99.8 1.3E-18 4.4E-23 182.9 26.1 182 67-257 88-294 (343)
69 3dwl_C Actin-related protein 2 99.8 5.6E-20 1.9E-24 195.8 15.8 189 55-255 56-281 (377)
70 4e54_B DNA damage-binding prot 99.8 5.2E-19 1.8E-23 192.5 22.8 199 55-257 165-389 (435)
71 2aq5_A Coronin-1A; WD40 repeat 99.8 2.2E-18 7.5E-23 185.4 27.4 188 59-257 41-256 (402)
72 2xyi_A Probable histone-bindin 99.8 1.8E-18 6E-23 188.0 26.8 189 58-256 187-411 (430)
73 2j04_B YDR362CP, TAU91; beta p 99.8 4E-19 1.4E-23 196.6 21.7 179 69-257 178-388 (524)
74 2w18_A PALB2, fancn, partner a 99.8 1.3E-18 4.5E-23 176.7 23.5 171 72-253 155-355 (356)
75 3jrp_A Fusion protein of prote 99.8 1.4E-18 4.8E-23 184.5 25.0 199 55-257 56-289 (379)
76 2oaj_A Protein SNI1; WD40 repe 99.8 6E-19 2.1E-23 208.7 24.3 191 59-257 24-244 (902)
77 3jro_A Fusion protein of prote 99.8 5.7E-19 1.9E-23 205.7 23.5 190 59-257 16-240 (753)
78 3mmy_A MRNA export factor; mRN 99.8 2.4E-18 8.3E-23 181.7 26.3 192 59-256 46-305 (368)
79 1sq9_A Antiviral protein SKI8; 99.8 8.6E-19 2.9E-23 187.9 23.1 195 55-256 122-396 (397)
80 3odt_A Protein DOA1; ubiquitin 99.8 1.8E-18 6E-23 178.6 24.4 189 55-258 105-299 (313)
81 3v7d_B Cell division control p 99.8 3.2E-18 1.1E-22 187.8 27.4 186 55-256 163-382 (464)
82 4a11_B DNA excision repair pro 99.8 5.7E-18 2E-22 181.7 28.7 201 55-258 44-279 (408)
83 3sfz_A APAF-1, apoptotic pepti 99.8 6.6E-18 2.3E-22 208.5 33.0 199 55-257 616-830 (1249)
84 1yfq_A Cell cycle arrest prote 99.8 4.8E-18 1.6E-22 178.0 26.7 186 59-256 18-226 (342)
85 4ggc_A P55CDC, cell division c 99.8 5E-18 1.7E-22 175.7 26.5 187 57-256 30-316 (318)
86 4aow_A Guanine nucleotide-bind 99.8 5.1E-18 1.8E-22 177.4 26.6 196 55-257 87-339 (340)
87 2ovr_B FBW7, F-BOX/WD repeat p 99.8 2.4E-17 8.1E-22 179.9 32.9 189 55-257 200-393 (445)
88 3bg1_A Protein SEC13 homolog; 99.8 4.1E-19 1.4E-23 184.5 17.5 195 55-255 58-293 (316)
89 3odt_A Protein DOA1; ubiquitin 99.8 1.8E-17 6.2E-22 170.9 29.6 180 59-257 25-216 (313)
90 2j04_A TAU60, YPL007P, hypothe 99.8 1.2E-18 4.2E-23 188.3 21.2 179 59-254 92-296 (588)
91 2j04_B YDR362CP, TAU91; beta p 99.8 4.4E-19 1.5E-23 196.3 18.2 189 55-256 208-429 (524)
92 2pm9_A Protein WEB1, protein t 99.8 1.9E-18 6.3E-23 186.4 22.8 193 55-257 68-296 (416)
93 3i2n_A WD repeat-containing pr 99.8 1.1E-17 3.7E-22 176.2 28.0 187 59-257 25-245 (357)
94 3dw8_B Serine/threonine-protei 99.8 1.3E-18 4.3E-23 189.8 20.9 192 59-257 100-375 (447)
95 4gga_A P55CDC, cell division c 99.8 2.9E-17 1E-21 177.7 31.1 189 57-256 110-311 (420)
96 3zwl_B Eukaryotic translation 99.8 2.6E-17 8.9E-22 173.8 29.7 189 55-256 75-305 (369)
97 3i2n_A WD repeat-containing pr 99.8 5.3E-18 1.8E-22 178.5 24.2 184 61-256 126-354 (357)
98 2vdu_B TRNA (guanine-N(7)-)-me 99.8 1.3E-17 4.4E-22 182.4 27.6 224 59-299 109-371 (450)
99 3gre_A Serine/threonine-protei 99.8 3.4E-18 1.1E-22 186.0 22.8 198 55-258 112-362 (437)
100 2vdu_B TRNA (guanine-N(7)-)-me 99.8 2.3E-17 7.8E-22 180.3 29.2 188 58-257 10-273 (450)
101 3mkq_A Coatomer beta'-subunit; 99.8 1.1E-17 3.9E-22 197.0 28.5 187 59-257 62-261 (814)
102 2pm9_A Protein WEB1, protein t 99.8 2.7E-18 9.4E-23 185.1 21.1 190 59-258 120-340 (416)
103 2oaj_A Protein SNI1; WD40 repe 99.8 6.3E-18 2.2E-22 199.9 25.9 153 59-218 442-673 (902)
104 4gq1_A NUP37; propeller, trans 99.8 2.6E-18 9E-23 184.2 20.6 195 58-257 95-350 (393)
105 2j04_A TAU60, YPL007P, hypothe 99.8 2.8E-18 9.4E-23 185.6 19.9 184 58-257 21-256 (588)
106 3gre_A Serine/threonine-protei 99.8 7.1E-18 2.4E-22 183.5 23.4 189 62-252 180-437 (437)
107 1pgu_A Actin interacting prote 99.8 2.2E-17 7.5E-22 187.6 28.3 187 59-257 25-240 (615)
108 3jro_A Fusion protein of prote 99.8 5.5E-18 1.9E-22 197.4 22.3 202 55-257 54-287 (753)
109 1pgu_A Actin interacting prote 99.8 3.1E-17 1.1E-21 186.4 26.8 190 59-257 71-285 (615)
110 4gga_A P55CDC, cell division c 99.8 1.2E-16 4.2E-21 172.8 30.1 189 55-257 148-355 (420)
111 1yfq_A Cell cycle arrest prote 99.8 4.9E-17 1.7E-21 170.2 24.4 190 59-257 63-284 (342)
112 3sfz_A APAF-1, apoptotic pepti 99.8 1.3E-17 4.5E-22 205.9 22.6 189 58-259 967-1162(1249)
113 4a11_B DNA excision repair pro 99.8 1.7E-16 5.8E-21 170.2 26.7 197 55-257 100-367 (408)
114 3lrv_A PRE-mRNA-splicing facto 99.8 1.7E-17 5.8E-22 174.4 18.2 183 60-258 44-247 (343)
115 4gq1_A NUP37; propeller, trans 99.7 3.6E-17 1.2E-21 175.4 19.5 180 63-254 155-388 (393)
116 3vu4_A KMHSV2; beta-propeller 99.7 5E-16 1.7E-20 163.9 24.6 196 56-258 62-339 (355)
117 3f3f_A Nucleoporin SEH1; struc 99.7 2.9E-16 9.9E-21 164.0 21.2 156 55-215 58-343 (351)
118 3vu4_A KMHSV2; beta-propeller 99.7 6.3E-16 2.2E-20 163.2 23.6 192 59-257 26-273 (355)
119 4h5i_A Guanine nucleotide-exch 99.7 1.2E-15 4E-20 161.8 25.2 190 55-257 74-302 (365)
120 3mmy_A MRNA export factor; mRN 99.7 2.5E-16 8.4E-21 166.2 18.6 191 55-252 87-343 (368)
121 1l0q_A Surface layer protein; 99.7 2.6E-14 9.1E-19 152.5 29.3 183 59-256 38-234 (391)
122 1l0q_A Surface layer protein; 99.6 5.7E-14 2E-18 149.9 29.1 177 65-256 3-190 (391)
123 2oit_A Nucleoporin 214KDA; NH2 99.6 3.6E-15 1.2E-19 161.5 17.8 195 56-257 40-280 (434)
124 3bws_A Protein LP49; two-domai 99.6 6.6E-14 2.3E-18 151.6 27.6 184 59-256 176-391 (433)
125 3bws_A Protein LP49; two-domai 99.6 2.4E-14 8.2E-19 155.1 23.9 184 58-255 128-334 (433)
126 2w18_A PALB2, fancn, partner a 99.6 1.1E-14 3.7E-19 148.0 19.1 144 56-207 182-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.6 6.9E-14 2.4E-18 150.8 24.8 182 59-255 185-387 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.6 2.1E-13 7.1E-18 147.0 26.5 180 64-257 143-346 (415)
129 4ggc_A P55CDC, cell division c 99.6 4.6E-14 1.6E-18 145.7 20.2 149 56-210 69-316 (318)
130 3lvg_A Clathrin heavy chain 1; 99.6 3.8E-18 1.3E-22 174.7 -11.5 279 410-716 42-330 (624)
131 2oit_A Nucleoporin 214KDA; NH2 99.5 1.7E-13 5.9E-18 148.3 20.5 145 59-210 99-279 (434)
132 2ojh_A Uncharacterized protein 99.5 2.6E-12 9E-17 130.4 24.0 186 59-256 48-259 (297)
133 1xi4_A Clathrin heavy chain; a 99.5 4.1E-13 1.4E-17 156.0 19.6 298 401-718 1057-1383(1630)
134 3vgz_A Uncharacterized protein 99.4 1.1E-10 3.9E-15 122.0 31.3 186 57-256 93-304 (353)
135 2ojh_A Uncharacterized protein 99.4 3.8E-11 1.3E-15 121.7 26.0 173 69-255 17-204 (297)
136 1b89_A Protein (clathrin heavy 99.4 8E-13 2.7E-17 138.6 13.5 295 400-719 9-311 (449)
137 1nir_A Nitrite reductase; hemo 99.4 8.1E-12 2.8E-16 139.1 22.2 185 59-257 144-357 (543)
138 1ri6_A Putative isomerase YBHE 99.4 8.3E-11 2.8E-15 122.4 27.3 192 58-255 43-262 (343)
139 3u4y_A Uncharacterized protein 99.4 9E-11 3.1E-15 121.8 27.4 188 60-257 5-209 (331)
140 3u4y_A Uncharacterized protein 99.3 8.8E-11 3E-15 121.9 23.1 187 57-256 44-253 (331)
141 2ecf_A Dipeptidyl peptidase IV 99.3 1.4E-11 4.9E-16 143.2 18.4 187 58-256 42-322 (741)
142 1xfd_A DIP, dipeptidyl aminope 99.3 5.3E-12 1.8E-16 146.4 14.5 191 59-257 23-291 (723)
143 1pby_B Quinohemoprotein amine 99.3 9.4E-11 3.2E-15 121.6 22.0 184 58-257 39-312 (337)
144 1pby_B Quinohemoprotein amine 99.3 3.6E-10 1.2E-14 117.2 25.0 147 65-219 2-173 (337)
145 1ri6_A Putative isomerase YBHE 99.3 2.4E-10 8.1E-15 118.9 23.6 186 57-255 88-308 (343)
146 1nir_A Nitrite reductase; hemo 99.3 2.1E-10 7.2E-15 127.6 24.4 190 58-256 184-403 (543)
147 1xi4_A Clathrin heavy chain; a 99.3 3E-08 1E-12 115.9 42.5 515 60-707 73-637 (1630)
148 3vgz_A Uncharacterized protein 99.3 3.2E-10 1.1E-14 118.6 22.3 191 58-257 46-264 (353)
149 2ecf_A Dipeptidyl peptidase IV 99.3 1.2E-10 4E-15 135.5 20.2 187 58-254 114-366 (741)
150 3hfq_A Uncharacterized protein 99.3 1.4E-09 4.8E-14 113.7 26.3 192 58-255 45-271 (347)
151 1jmx_B Amine dehydrogenase; ox 99.2 1.1E-09 3.6E-14 114.3 23.5 152 59-219 6-185 (349)
152 3hfq_A Uncharacterized protein 99.2 1.5E-09 5.3E-14 113.4 24.7 188 57-255 90-317 (347)
153 2z3z_A Dipeptidyl aminopeptida 99.2 2.6E-10 9E-15 131.7 20.1 186 59-254 88-341 (706)
154 1k32_A Tricorn protease; prote 99.2 2.5E-10 8.6E-15 137.8 20.4 184 57-256 249-462 (1045)
155 1k32_A Tricorn protease; prote 99.2 2.6E-10 9E-15 137.7 19.8 183 57-254 300-501 (1045)
156 1jmx_B Amine dehydrogenase; ox 99.2 8.2E-10 2.8E-14 115.1 20.6 183 57-256 47-326 (349)
157 3o4h_A Acylamino-acid-releasin 99.2 4.2E-10 1.4E-14 126.9 18.6 180 58-253 27-274 (582)
158 2z3z_A Dipeptidyl aminopeptida 99.2 5.8E-10 2E-14 128.8 20.2 187 57-256 185-436 (706)
159 1xfd_A DIP, dipeptidyl aminope 99.1 1.1E-09 3.8E-14 126.8 20.5 181 58-246 66-329 (723)
160 4a5s_A Dipeptidyl peptidase 4 99.1 8.7E-10 3E-14 128.0 18.5 191 58-257 22-296 (740)
161 3scy_A Hypothetical bacterial 99.1 3.9E-08 1.4E-12 103.2 29.4 188 58-255 55-291 (361)
162 1z68_A Fibroblast activation p 99.1 1.3E-10 4.6E-15 134.5 11.3 184 59-252 22-284 (719)
163 3azo_A Aminopeptidase; POP fam 99.1 5.3E-09 1.8E-13 119.7 24.2 191 59-255 83-323 (662)
164 1q7f_A NHL, brain tumor CG1071 99.1 1.2E-08 4.2E-13 103.3 24.1 183 62-256 87-281 (286)
165 3o4h_A Acylamino-acid-releasin 99.1 9.6E-10 3.3E-14 123.9 16.6 177 57-253 114-311 (582)
166 1jof_A Carboxy-CIS,CIS-muconat 99.1 2.6E-08 9E-13 104.9 25.1 187 59-256 89-342 (365)
167 1b89_A Protein (clathrin heavy 99.1 3.8E-08 1.3E-12 103.3 25.5 290 394-707 149-449 (449)
168 3fvz_A Peptidyl-glycine alpha- 99.0 8E-08 2.7E-12 99.6 26.9 191 58-256 96-323 (329)
169 3scy_A Hypothetical bacterial 99.0 7.7E-08 2.6E-12 101.0 26.7 187 56-255 101-337 (361)
170 2gop_A Trilobed protease; beta 99.0 8.2E-08 2.8E-12 100.0 25.0 177 57-254 63-290 (347)
171 1z68_A Fibroblast activation p 99.0 2.5E-09 8.5E-14 123.8 14.2 188 57-255 64-346 (719)
172 1jof_A Carboxy-CIS,CIS-muconat 99.0 3.6E-08 1.2E-12 103.9 21.7 191 58-254 45-290 (365)
173 1q7f_A NHL, brain tumor CG1071 99.0 1.5E-07 5.3E-12 95.1 25.1 183 59-253 36-236 (286)
174 3no2_A Uncharacterized protein 98.9 1.8E-07 6.2E-12 94.2 24.7 178 63-257 4-197 (276)
175 3e5z_A Putative gluconolactona 98.9 1.6E-07 5.6E-12 95.5 24.7 180 58-253 33-244 (296)
176 3fvz_A Peptidyl-glycine alpha- 98.9 3.4E-08 1.2E-12 102.4 19.8 188 59-257 30-279 (329)
177 4a5s_A Dipeptidyl peptidase 4 98.9 4.9E-08 1.7E-12 113.2 23.0 147 58-211 67-296 (740)
178 3pe7_A Oligogalacturonate lyas 98.9 6.5E-08 2.2E-12 102.5 20.0 191 58-256 86-330 (388)
179 2xdw_A Prolyl endopeptidase; a 98.9 1.3E-06 4.3E-11 100.8 32.3 187 58-254 130-365 (710)
180 3azo_A Aminopeptidase; POP fam 98.9 4.7E-08 1.6E-12 111.9 18.9 185 58-254 135-366 (662)
181 1xip_A Nucleoporin NUP159; bet 98.8 2.8E-08 9.5E-13 104.1 14.7 168 57-242 42-230 (388)
182 2bkl_A Prolyl endopeptidase; m 98.8 2.6E-07 9E-12 106.2 23.7 184 59-255 127-349 (695)
183 2oiz_A Aromatic amine dehydrog 98.8 3.2E-07 1.1E-11 96.3 21.6 187 58-256 55-335 (361)
184 3pe7_A Oligogalacturonate lyas 98.8 1.3E-07 4.4E-12 100.2 18.4 187 59-257 42-275 (388)
185 1rwi_B Serine/threonine-protei 98.8 4.3E-07 1.5E-11 90.7 20.9 186 58-257 72-266 (270)
186 2bkl_A Prolyl endopeptidase; m 98.8 2.2E-07 7.5E-12 106.9 20.4 195 49-256 64-305 (695)
187 3e5z_A Putative gluconolactona 98.7 1.3E-06 4.3E-11 88.8 22.7 182 59-255 75-286 (296)
188 2dg1_A DRP35, lactonase; beta 98.7 7.9E-07 2.7E-11 92.0 21.5 187 59-253 51-261 (333)
189 1xip_A Nucleoporin NUP159; bet 98.7 4.3E-07 1.5E-11 95.0 19.2 174 95-305 39-236 (388)
190 3lvg_A Clathrin heavy chain 1; 98.7 1.4E-09 4.8E-14 112.0 -1.1 291 401-715 178-479 (624)
191 2xdw_A Prolyl endopeptidase; a 98.7 1.4E-06 4.6E-11 100.6 23.1 194 50-255 69-320 (710)
192 1yr2_A Prolyl oligopeptidase; 98.7 4.2E-06 1.4E-10 96.9 27.2 184 58-254 168-392 (741)
193 1rwi_B Serine/threonine-protei 98.7 1.2E-06 4.1E-11 87.4 19.7 184 59-255 30-222 (270)
194 3no2_A Uncharacterized protein 98.6 1.3E-06 4.6E-11 87.7 19.3 177 58-244 42-231 (276)
195 2dg1_A DRP35, lactonase; beta 98.6 7E-07 2.4E-11 92.3 17.6 181 59-255 12-213 (333)
196 3c5m_A Oligogalacturonate lyas 98.6 1.2E-07 4.1E-12 100.5 12.0 183 58-256 86-330 (396)
197 3c5m_A Oligogalacturonate lyas 98.5 2.8E-07 9.5E-12 97.7 11.7 186 59-256 42-274 (396)
198 1qks_A Cytochrome CD1 nitrite 98.5 4.8E-06 1.6E-10 92.4 21.9 182 62-257 165-375 (567)
199 1yr2_A Prolyl oligopeptidase; 98.5 9E-06 3.1E-10 94.1 24.5 192 51-255 105-350 (741)
200 2gop_A Trilobed protease; beta 98.5 3.6E-06 1.2E-10 87.4 18.3 174 59-254 110-330 (347)
201 3dsm_A Uncharacterized protein 98.5 6.9E-06 2.4E-10 84.8 19.7 184 59-257 48-255 (328)
202 2z2n_A Virginiamycin B lyase; 98.4 6.5E-05 2.2E-09 75.7 25.7 183 60-256 106-296 (299)
203 2z2n_A Virginiamycin B lyase; 98.4 6.2E-05 2.1E-09 75.8 25.2 179 60-253 64-253 (299)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 2.6E-05 8.8E-10 79.5 21.5 183 60-255 78-299 (314)
205 1qks_A Cytochrome CD1 nitrite 98.4 5E-05 1.7E-09 84.2 24.3 189 58-256 202-422 (567)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 1.7E-05 5.7E-10 80.9 17.8 184 58-255 23-256 (314)
207 3dsm_A Uncharacterized protein 98.3 4.5E-05 1.5E-09 78.7 19.7 184 59-254 90-301 (328)
208 2qc5_A Streptogramin B lactona 98.2 0.00023 7.9E-09 71.6 24.0 180 59-253 26-216 (300)
209 2hz6_A Endoplasmic reticulum t 98.2 4.6E-07 1.6E-11 95.4 3.1 181 61-257 6-194 (369)
210 3g4e_A Regucalcin; six bladed 98.2 7.7E-05 2.6E-09 75.6 19.4 184 59-255 19-229 (297)
211 2ghs_A AGR_C_1268P; regucalcin 98.2 0.00018 6.1E-09 74.0 22.1 181 59-253 55-258 (326)
212 3iuj_A Prolyl endopeptidase; h 98.2 0.00018 6.1E-09 82.4 24.0 148 59-212 135-317 (693)
213 1bpo_A Protein (clathrin); cla 98.2 0.01 3.5E-07 61.3 34.0 298 60-472 73-405 (494)
214 2mad_H Methylamine dehydrogena 98.2 0.00047 1.6E-08 72.3 25.1 71 57-128 70-160 (373)
215 2qc5_A Streptogramin B lactona 98.2 0.00055 1.9E-08 68.8 24.9 179 60-253 69-258 (300)
216 3hrp_A Uncharacterized protein 98.1 0.00027 9.4E-09 75.1 23.5 187 58-253 136-352 (409)
217 3hrp_A Uncharacterized protein 98.1 0.00043 1.5E-08 73.6 24.3 189 58-253 176-408 (409)
218 2oiz_A Aromatic amine dehydrog 98.1 0.00011 3.7E-09 76.9 19.3 173 72-255 29-230 (361)
219 3dr2_A Exported gluconolactona 98.1 0.00021 7.3E-09 72.6 20.9 179 59-253 51-265 (305)
220 3dr2_A Exported gluconolactona 98.1 0.00012 3.9E-09 74.6 18.8 178 59-252 92-303 (305)
221 3g4e_A Regucalcin; six bladed 98.1 0.0002 6.8E-09 72.5 20.1 172 59-243 60-259 (297)
222 3sjl_D Methylamine dehydrogena 98.0 0.00037 1.3E-08 72.5 20.4 185 61-256 41-257 (386)
223 2ghs_A AGR_C_1268P; regucalcin 97.9 0.0013 4.3E-08 67.5 22.7 168 60-243 97-289 (326)
224 2mad_H Methylamine dehydrogena 97.8 0.0027 9.4E-08 66.4 23.0 183 62-255 30-243 (373)
225 1npe_A Nidogen, entactin; glyc 97.7 0.0052 1.8E-07 60.7 23.1 184 59-255 42-238 (267)
226 2iwa_A Glutamine cyclotransfer 97.7 0.0046 1.6E-07 60.7 21.3 189 59-257 27-239 (266)
227 3sjl_D Methylamine dehydrogena 97.7 0.0051 1.8E-07 63.9 22.6 147 58-211 83-258 (386)
228 3hxj_A Pyrrolo-quinoline quino 97.7 0.001 3.4E-08 68.0 17.4 173 64-255 147-324 (330)
229 3c75_H MADH, methylamine dehyd 97.7 0.0006 2.1E-08 72.2 15.6 187 57-257 122-404 (426)
230 3iuj_A Prolyl endopeptidase; h 97.7 0.0026 8.9E-08 72.7 22.1 186 58-256 180-406 (693)
231 3hxj_A Pyrrolo-quinoline quino 97.7 0.0019 6.5E-08 65.9 19.1 170 64-252 107-281 (330)
232 2qe8_A Uncharacterized protein 97.6 0.0026 9E-08 65.7 19.1 150 59-213 73-282 (343)
233 2iwa_A Glutamine cyclotransfer 97.5 0.0096 3.3E-07 58.4 20.7 155 95-257 22-183 (266)
234 2qe8_A Uncharacterized protein 97.5 0.0052 1.8E-07 63.4 19.9 105 59-168 23-153 (343)
235 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.016 5.6E-07 60.3 23.5 176 64-252 188-375 (376)
236 3c75_H MADH, methylamine dehyd 97.5 0.011 3.7E-07 62.6 21.8 183 63-256 83-296 (426)
237 2fp8_A Strictosidine synthase; 97.5 0.014 4.7E-07 59.5 22.1 188 60-256 87-314 (322)
238 3nol_A Glutamine cyclotransfer 97.5 0.01 3.5E-07 57.6 19.4 175 63-246 52-248 (262)
239 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.0051 1.7E-07 64.2 18.8 187 62-257 51-260 (376)
240 1npe_A Nidogen, entactin; glyc 97.4 0.023 7.9E-07 56.0 22.2 154 59-218 85-247 (267)
241 3nok_A Glutaminyl cyclase; bet 97.4 0.0061 2.1E-07 59.2 17.0 176 60-246 60-258 (268)
242 3qqz_A Putative uncharacterize 97.4 0.067 2.3E-06 52.1 24.3 187 59-251 33-249 (255)
243 2ece_A 462AA long hypothetical 97.3 0.069 2.4E-06 56.1 24.8 179 59-244 144-399 (462)
244 1mda_H Methylamine dehydrogena 97.3 0.0024 8.1E-08 66.4 13.4 68 57-124 69-158 (368)
245 3nok_A Glutaminyl cyclase; bet 97.3 0.0038 1.3E-07 60.7 13.7 153 95-257 56-212 (268)
246 1kb0_A Quinohemoprotein alcoho 97.2 0.018 6.2E-07 65.3 21.4 173 58-242 248-536 (677)
247 1yiq_A Quinohemoprotein alcoho 97.2 0.028 9.5E-07 63.9 22.9 71 58-128 240-342 (689)
248 3mbr_X Glutamine cyclotransfer 97.2 0.074 2.5E-06 51.1 22.3 178 60-246 26-227 (243)
249 3mbr_X Glutamine cyclotransfer 97.2 0.0073 2.5E-07 58.1 14.6 160 87-257 13-181 (243)
250 2p4o_A Hypothetical protein; p 97.2 0.1 3.4E-06 52.5 24.2 180 59-252 38-239 (306)
251 3nol_A Glutamine cyclotransfer 97.1 0.0047 1.6E-07 60.0 12.8 153 95-257 44-203 (262)
252 2xe4_A Oligopeptidase B; hydro 97.0 0.022 7.5E-07 65.6 20.0 183 58-254 179-397 (751)
253 3v64_C Agrin; beta propeller, 97.0 0.18 6.1E-06 51.8 24.5 187 55-254 34-233 (349)
254 4a2l_A BT_4663, two-component 97.0 0.15 5.2E-06 59.0 26.6 193 55-256 310-527 (795)
255 2hz6_A Endoplasmic reticulum t 97.0 9.1E-05 3.1E-09 77.7 -0.8 146 60-217 45-200 (369)
256 1ijq_A LDL receptor, low-densi 96.9 0.19 6.6E-06 50.8 23.8 187 59-255 36-238 (316)
257 1kb0_A Quinohemoprotein alcoho 96.9 0.03 1E-06 63.4 18.9 183 64-258 174-510 (677)
258 3p5b_L Low density lipoprotein 96.8 0.17 5.9E-06 53.1 23.4 186 60-255 119-320 (400)
259 3v65_B Low-density lipoprotein 96.8 0.14 4.8E-06 53.5 22.6 185 57-254 79-276 (386)
260 1fwx_A Nitrous oxide reductase 96.8 0.036 1.2E-06 60.4 17.5 173 62-243 145-405 (595)
261 4a2l_A BT_4663, two-component 96.8 0.24 8.2E-06 57.3 26.1 189 54-254 356-570 (795)
262 1yiq_A Quinohemoprotein alcoho 96.8 0.053 1.8E-06 61.6 19.8 53 200-258 455-508 (689)
263 3v65_B Low-density lipoprotein 96.7 0.22 7.6E-06 51.9 23.1 182 59-252 122-315 (386)
264 2fp8_A Strictosidine synthase; 96.7 0.09 3.1E-06 53.3 19.6 144 58-209 24-216 (322)
265 3v64_C Agrin; beta propeller, 96.7 0.45 1.5E-05 48.8 24.4 148 59-212 79-237 (349)
266 3sov_A LRP-6, low-density lipo 96.5 0.34 1.2E-05 49.0 22.1 153 59-217 85-246 (318)
267 3m0c_C LDL receptor, low-densi 96.5 0.25 8.4E-06 56.7 23.1 146 65-216 437-596 (791)
268 3sov_A LRP-6, low-density lipo 96.5 0.42 1.4E-05 48.3 22.3 184 59-255 41-238 (318)
269 2ece_A 462AA long hypothetical 96.4 0.14 4.6E-06 53.9 18.4 187 62-255 93-352 (462)
270 1ijq_A LDL receptor, low-densi 96.4 0.58 2E-05 47.1 22.9 152 59-216 83-245 (316)
271 3p5b_L Low density lipoprotein 96.3 0.49 1.7E-05 49.6 22.7 185 58-254 76-276 (400)
272 2xpi_A Anaphase-promoting comp 96.3 0.17 5.8E-06 56.0 20.3 66 398-463 155-236 (597)
273 1w3b_A UDP-N-acetylglucosamine 96.3 0.31 1.1E-05 50.5 20.8 56 400-456 6-62 (388)
274 3v9f_A Two-component system se 96.3 0.38 1.3E-05 55.5 23.3 189 54-255 362-568 (781)
275 2xe4_A Oligopeptidase B; hydro 96.2 0.14 4.9E-06 58.7 19.1 110 95-210 175-305 (751)
276 2xpi_A Anaphase-promoting comp 96.1 0.21 7E-06 55.3 19.3 79 396-476 87-168 (597)
277 3tc9_A Hypothetical hydrolase; 96.0 0.33 1.1E-05 51.5 19.3 146 57-208 141-300 (430)
278 2xbg_A YCF48-like protein; pho 96.0 0.86 3E-05 46.1 21.8 177 62-251 131-318 (327)
279 1kv9_A Type II quinohemoprotei 95.9 0.41 1.4E-05 54.0 20.5 70 59-128 236-337 (668)
280 3v9f_A Two-component system se 95.8 0.94 3.2E-05 52.1 23.9 189 55-256 258-479 (781)
281 4hw6_A Hypothetical protein, I 95.6 2.7 9.2E-05 44.4 24.4 53 58-110 144-198 (433)
282 3m0c_C LDL receptor, low-densi 95.6 1.3 4.6E-05 50.6 23.2 173 70-254 400-588 (791)
283 3hym_B Cell division cycle pro 95.6 0.25 8.5E-06 49.5 15.7 58 398-455 27-84 (330)
284 4a0p_A LRP6, LRP-6, low-densit 95.6 1.4 4.7E-05 49.1 22.9 185 59-256 43-238 (628)
285 3amr_A 3-phytase; beta-propell 95.5 1.1 3.8E-05 45.4 19.7 180 64-254 40-262 (355)
286 3s94_A LRP-6, low-density lipo 95.5 1.1 3.7E-05 49.9 21.8 187 59-257 46-245 (619)
287 1fwx_A Nitrous oxide reductase 95.5 0.67 2.3E-05 50.4 19.1 181 63-255 100-361 (595)
288 1flg_A Protein (quinoprotein e 95.5 0.96 3.3E-05 49.9 21.1 54 74-128 291-359 (582)
289 1n7d_A LDL receptor, low-densi 95.4 0.18 6.1E-06 57.2 15.3 185 59-253 412-612 (699)
290 1k3i_A Galactose oxidase precu 95.4 0.85 2.9E-05 51.3 20.8 105 58-167 191-321 (656)
291 1w3b_A UDP-N-acetylglucosamine 95.4 0.86 2.9E-05 47.0 19.5 75 401-475 41-118 (388)
292 1kv9_A Type II quinohemoprotei 95.3 0.76 2.6E-05 51.8 19.9 52 200-257 438-490 (668)
293 2p9w_A MAL S 1 allergenic prot 95.3 1.4 4.7E-05 44.3 19.3 144 59-209 19-215 (334)
294 3ieg_A DNAJ homolog subfamily 95.2 0.87 3E-05 45.9 18.6 299 400-717 10-333 (359)
295 3cv0_A Peroxisome targeting si 95.1 1.1 3.7E-05 44.5 18.9 61 396-456 24-84 (327)
296 3tc9_A Hypothetical hydrolase; 95.0 0.93 3.2E-05 47.9 18.6 148 95-255 138-301 (430)
297 2ad6_A Methanol dehydrogenase 95.0 1.2 4.1E-05 49.0 20.0 69 59-128 241-339 (571)
298 1w6s_A Methanol dehydrogenase 95.0 1.8 6E-05 47.9 21.1 69 59-128 247-346 (599)
299 3mkr_A Coatomer subunit epsilo 94.8 3.4 0.00012 40.7 25.7 51 399-449 5-56 (291)
300 1fch_A Peroxisomal targeting s 94.8 0.38 1.3E-05 49.1 14.6 58 398-455 69-126 (368)
301 1n7d_A LDL receptor, low-densi 94.8 0.26 8.8E-06 55.9 14.0 149 64-218 465-623 (699)
302 3u4t_A TPR repeat-containing p 94.7 2.3 7.8E-05 40.9 19.3 123 399-569 9-135 (272)
303 3fp2_A TPR repeat-containing p 94.6 3 0.0001 44.8 22.1 149 544-715 245-403 (537)
304 3s94_A LRP-6, low-density lipo 94.5 5.1 0.00018 44.4 23.5 146 60-211 356-512 (619)
305 2p4o_A Hypothetical protein; p 94.4 2.8 9.5E-05 41.7 19.5 155 94-255 32-198 (306)
306 2y4t_A DNAJ homolog subfamily 94.2 0.31 1E-05 51.6 12.6 299 400-717 33-356 (450)
307 3vtx_A MAMA; tetratricopeptide 94.2 0.26 8.9E-06 44.7 10.4 54 401-455 13-67 (184)
308 4eqf_A PEX5-related protein; a 94.1 2.1 7.1E-05 43.5 18.4 60 396-455 68-127 (365)
309 4a0p_A LRP6, LRP-6, low-densit 94.0 3.7 0.00013 45.6 21.1 151 59-215 86-243 (628)
310 1mda_H Methylamine dehydrogena 94.0 0.28 9.4E-06 50.7 11.1 86 58-144 269-367 (368)
311 3kya_A Putative phosphatase; s 93.8 8.1 0.00028 41.2 23.1 148 57-208 143-340 (496)
312 3qqz_A Putative uncharacterize 93.6 5.1 0.00017 38.6 18.6 141 60-206 77-250 (255)
313 3s25_A Hypothetical 7-bladed b 93.0 5.7 0.00019 39.4 18.7 140 60-213 21-180 (302)
314 3ieg_A DNAJ homolog subfamily 93.0 4.8 0.00017 40.1 18.7 150 400-568 44-214 (359)
315 1w6s_A Methanol dehydrogenase 92.9 2.3 7.8E-05 47.0 16.9 65 64-128 62-144 (599)
316 2gw1_A Mitochondrial precursor 92.7 1.3 4.5E-05 47.4 14.6 55 400-455 46-101 (514)
317 2vpj_A Kelch-like protein 12; 92.4 5.3 0.00018 39.3 17.7 146 59-214 58-236 (301)
318 2ad6_A Methanol dehydrogenase 92.4 1 3.5E-05 49.6 13.1 111 62-178 311-502 (571)
319 2y4t_A DNAJ homolog subfamily 92.3 1.8 6E-05 45.5 14.7 61 398-458 65-125 (450)
320 3as5_A MAMA; tetratricopeptide 92.2 1.4 4.7E-05 39.2 11.9 55 401-455 16-70 (186)
321 4hw6_A Hypothetical protein, I 92.2 5.8 0.0002 41.8 18.3 149 95-254 140-303 (433)
322 2xn4_A Kelch-like protein 2; s 92.0 8.9 0.0003 37.7 18.7 145 60-214 58-234 (302)
323 3ii7_A Kelch-like protein 7; p 91.9 7.8 0.00027 38.2 18.2 145 59-213 51-229 (306)
324 3s25_A Hypothetical 7-bladed b 91.7 11 0.00039 37.2 20.7 145 52-209 103-255 (302)
325 2ho1_A Type 4 fimbrial biogene 91.6 1.3 4.4E-05 42.2 11.7 55 401-455 45-99 (252)
326 3fp2_A TPR repeat-containing p 91.4 1.2 4.3E-05 48.0 12.5 56 401-457 33-89 (537)
327 1fch_A Peroxisomal targeting s 91.3 2.9 9.9E-05 42.3 14.7 118 404-568 36-158 (368)
328 2vq2_A PILW, putative fimbrial 90.8 2.9 9.8E-05 38.5 13.0 56 400-455 15-70 (225)
329 2gw1_A Mitochondrial precursor 90.3 3.8 0.00013 43.7 15.0 71 401-473 14-88 (514)
330 3kya_A Putative phosphatase; s 90.2 22 0.00074 37.9 22.9 101 61-167 201-339 (496)
331 3amr_A 3-phytase; beta-propell 89.8 18 0.00062 36.5 18.9 140 73-217 98-272 (355)
332 3pbp_A Nucleoporin NUP82; beta 89.6 5.7 0.00019 41.2 14.3 102 58-165 71-208 (452)
333 1tl2_A L10, protein (tachylect 89.4 4.6 0.00016 37.8 12.3 94 58-163 46-157 (236)
334 3vtx_A MAMA; tetratricopeptide 89.3 6 0.0002 35.2 13.5 121 428-567 6-132 (184)
335 2ism_A Putative oxidoreductase 89.3 20 0.00068 36.3 19.7 93 58-157 36-153 (352)
336 4ga2_A E3 SUMO-protein ligase 89.3 1.6 5.5E-05 38.1 9.0 54 403-456 7-60 (150)
337 2q7f_A YRRB protein; TPR, prot 89.2 1.4 4.7E-05 41.5 9.3 55 401-455 65-119 (243)
338 2pl2_A Hypothetical conserved 89.2 1.6 5.3E-05 40.9 9.5 57 401-458 13-70 (217)
339 1flg_A Protein (quinoprotein e 89.0 2.3 8E-05 46.8 12.0 59 114-178 465-524 (582)
340 2ho1_A Type 4 fimbrial biogene 89.0 1.9 6.6E-05 40.9 10.2 56 400-455 78-133 (252)
341 1xnf_A Lipoprotein NLPI; TPR, 88.7 2 6.9E-05 41.3 10.3 52 404-455 16-71 (275)
342 1zgk_A Kelch-like ECH-associat 88.5 20 0.00068 35.2 19.1 182 59-256 20-241 (308)
343 4a1s_A PINS, partner of inscut 88.5 4.2 0.00014 41.9 13.2 55 401-455 56-114 (411)
344 4asc_A Kelch repeat and BTB do 88.4 19 0.00067 35.4 17.8 147 58-214 40-226 (315)
345 2xbg_A YCF48-like protein; pho 88.0 23 0.00078 35.3 22.2 180 57-248 82-272 (327)
346 1k3i_A Galactose oxidase precu 88.0 8 0.00027 43.2 15.9 111 98-213 190-327 (656)
347 1zgk_A Kelch-like ECH-associat 87.9 19 0.00065 35.4 17.2 144 60-214 67-245 (308)
348 2fo7_A Synthetic consensus TPR 87.8 6.1 0.00021 32.3 11.6 56 400-455 8-63 (136)
349 2q7f_A YRRB protein; TPR, prot 87.8 1.4 4.7E-05 41.5 8.2 57 399-455 29-85 (243)
350 2vpj_A Kelch-like protein 12; 87.7 21 0.0007 34.9 17.3 182 62-256 13-232 (301)
351 2yhc_A BAMD, UPF0169 lipoprote 87.4 3.4 0.00012 38.7 10.7 58 400-457 11-71 (225)
352 2xzh_A Clathrin heavy chain 1; 87.4 25 0.00085 35.1 27.2 138 60-208 74-235 (365)
353 2p9w_A MAL S 1 allergenic prot 87.4 5.3 0.00018 40.0 12.2 91 73-168 99-214 (334)
354 3qky_A Outer membrane assembly 87.2 6.2 0.00021 37.7 12.7 56 401-456 23-81 (261)
355 3a9g_A Putative uncharacterize 86.9 28 0.00097 35.2 21.2 95 57-157 33-153 (354)
356 3ii7_A Kelch-like protein 7; p 86.6 25 0.00087 34.3 21.8 177 64-256 12-226 (306)
357 4gyw_A UDP-N-acetylglucosamine 86.2 1.5 5.2E-05 49.7 8.5 56 401-457 17-73 (723)
358 3sre_A PON1, serum paraoxonase 86.1 31 0.0011 34.9 17.6 153 95-255 51-252 (355)
359 3qou_A Protein YBBN; thioredox 85.8 3.8 0.00013 40.2 10.5 39 530-568 207-245 (287)
360 3sf4_A G-protein-signaling mod 85.7 20 0.00067 36.3 16.5 55 401-455 17-75 (406)
361 2r5s_A Uncharacterized protein 85.4 5.8 0.0002 35.3 10.7 57 399-455 12-68 (176)
362 2qx5_A Nucleoporin NIC96; mRNA 85.4 6.4 0.00022 43.5 12.7 155 551-719 303-485 (661)
363 3hym_B Cell division cycle pro 85.4 28 0.00097 33.8 18.5 58 398-455 61-119 (330)
364 2xn4_A Kelch-like protein 2; s 85.2 29 0.001 33.8 20.8 180 62-256 14-230 (302)
365 1xnf_A Lipoprotein NLPI; TPR, 84.9 4.1 0.00014 39.0 10.1 75 400-474 50-127 (275)
366 2pl2_A Hypothetical conserved 84.1 1.2 4.1E-05 41.8 5.5 53 401-457 47-114 (217)
367 3ei3_A DNA damage-binding prot 83.4 82 0.0028 37.6 29.6 189 56-255 515-724 (1158)
368 3mkr_A Coatomer subunit epsilo 83.3 12 0.0004 36.7 12.8 150 401-600 109-268 (291)
369 3uq3_A Heat shock protein STI1 82.9 9.4 0.00032 35.8 11.7 47 401-456 87-134 (258)
370 3ei3_A DNA damage-binding prot 82.8 87 0.003 37.4 25.5 131 117-255 809-955 (1158)
371 3qhy_B Beta-lactamase inhibito 82.6 36 0.0012 33.1 15.9 177 57-255 26-207 (282)
372 2woz_A Kelch repeat and BTB do 82.5 30 0.001 34.0 15.7 147 58-214 51-236 (318)
373 3uq3_A Heat shock protein STI1 82.4 2.5 8.7E-05 39.9 7.3 55 400-455 12-66 (258)
374 2e2e_A Formate-dependent nitri 82.4 1.3 4.5E-05 39.6 4.9 53 403-455 20-72 (177)
375 2zwa_A Leucine carboxyl methyl 82.4 33 0.0011 38.5 17.4 145 60-211 394-579 (695)
376 3ro2_A PINS homolog, G-protein 81.9 24 0.00082 34.3 14.7 55 401-455 13-71 (338)
377 3ulq_A Response regulator aspa 81.4 48 0.0016 33.4 20.4 55 401-455 111-171 (383)
378 3ott_A Two-component system se 80.6 81 0.0028 35.5 23.2 144 57-212 105-263 (758)
379 1hh8_A P67PHOX, NCF-2, neutrop 80.5 19 0.00067 32.5 12.6 52 401-455 14-65 (213)
380 4i17_A Hypothetical protein; T 80.4 9.9 0.00034 35.2 10.6 54 401-456 15-71 (228)
381 4abn_A Tetratricopeptide repea 80.3 5.9 0.0002 42.2 9.9 29 540-568 256-284 (474)
382 3nf1_A KLC 1, kinesin light ch 80.1 6.8 0.00023 38.1 9.7 56 400-455 34-97 (311)
383 3pbp_A Nucleoporin NUP82; beta 79.7 49 0.0017 34.3 15.7 100 103-209 30-158 (452)
384 3u4t_A TPR repeat-containing p 79.6 7.7 0.00026 37.0 9.8 58 398-455 42-102 (272)
385 3sre_A PON1, serum paraoxonase 79.6 55 0.0019 33.0 17.2 129 72-209 81-252 (355)
386 3q15_A PSP28, response regulat 79.6 55 0.0019 33.0 20.3 53 403-455 111-169 (378)
387 3qhy_B Beta-lactamase inhibito 79.4 48 0.0016 32.2 17.1 177 56-254 64-245 (282)
388 4ady_A RPN2, 26S proteasome re 79.3 40 0.0014 38.8 16.4 38 542-579 215-255 (963)
389 1tl2_A L10, protein (tachylect 79.2 4.9 0.00017 37.6 7.4 99 94-202 41-156 (236)
390 2ond_A Cleavage stimulation fa 79.2 11 0.00037 37.2 10.9 60 540-599 201-273 (308)
391 1bpo_A Protein (clathrin); cla 79.1 65 0.0022 33.5 23.0 156 57-215 108-295 (494)
392 2xzh_A Clathrin heavy chain 1; 79.1 55 0.0019 32.7 22.6 194 55-255 107-332 (365)
393 3q15_A PSP28, response regulat 78.6 12 0.0004 38.2 11.3 55 401-455 190-250 (378)
394 2ism_A Putative oxidoreductase 78.3 59 0.002 32.7 18.6 79 74-156 105-220 (352)
395 2vq2_A PILW, putative fimbrial 78.2 10 0.00034 34.6 9.8 56 400-455 49-105 (225)
396 4gco_A Protein STI-1; structur 78.1 20 0.00069 29.7 10.8 33 535-567 74-106 (126)
397 1cru_A Protein (soluble quinop 77.7 73 0.0025 33.4 17.8 96 57-157 31-162 (454)
398 4eqf_A PEX5-related protein; a 77.5 10 0.00035 38.1 10.4 24 692-715 283-306 (365)
399 3cv0_A Peroxisome targeting si 77.5 2.4 8.4E-05 41.8 5.5 57 400-456 62-118 (327)
400 4ga2_A E3 SUMO-protein ligase 77.5 22 0.00075 30.4 11.2 28 540-567 29-56 (150)
401 2vsy_A XCC0866; transferase, g 76.9 15 0.00052 39.9 12.2 55 401-455 31-85 (568)
402 2zwa_A Leucine carboxyl methyl 76.1 65 0.0022 36.0 17.2 147 63-213 451-639 (695)
403 3ffl_A Anaphase-promoting comp 75.7 6.7 0.00023 34.7 6.9 64 392-455 19-91 (167)
404 2ond_A Cleavage stimulation fa 75.7 30 0.001 33.9 13.0 48 409-456 80-128 (308)
405 3mkq_B Coatomer subunit alpha; 75.3 45 0.0015 29.8 14.7 50 394-448 6-55 (177)
406 4gco_A Protein STI-1; structur 75.2 2.6 9E-05 35.4 4.2 56 401-456 21-76 (126)
407 2pzi_A Probable serine/threoni 75.0 6.9 0.00024 44.0 8.8 149 400-568 398-560 (681)
408 2h6f_A Protein farnesyltransfe 74.6 63 0.0022 33.0 15.4 43 525-567 114-157 (382)
409 3urz_A Uncharacterized protein 73.7 8.9 0.0003 35.2 7.9 57 401-458 12-85 (208)
410 4i17_A Hypothetical protein; T 73.0 17 0.00057 33.6 9.9 56 401-456 50-105 (228)
411 3n71_A Histone lysine methyltr 72.4 14 0.00049 39.4 10.0 25 543-567 394-418 (490)
412 3qwp_A SET and MYND domain-con 72.3 15 0.00053 38.4 10.2 57 399-455 293-357 (429)
413 4abn_A Tetratricopeptide repea 71.5 8.8 0.0003 40.8 8.3 180 407-599 82-290 (474)
414 1na3_A Designed protein CTPR2; 71.2 4.7 0.00016 30.6 4.6 56 401-456 17-72 (91)
415 2h6f_A Protein farnesyltransfe 71.1 10 0.00035 39.1 8.3 57 401-458 105-163 (382)
416 3nf1_A KLC 1, kinesin light ch 71.0 23 0.00077 34.2 10.8 55 401-455 77-139 (311)
417 3edt_B KLC 2, kinesin light ch 71.0 16 0.00056 34.5 9.5 49 407-455 22-71 (283)
418 3ulq_A Response regulator aspa 70.6 13 0.00045 37.8 9.2 55 401-455 192-252 (383)
419 2g8s_A Glucose/sorbosone dehyd 70.6 53 0.0018 33.0 13.6 96 57-157 22-148 (353)
420 3edt_B KLC 2, kinesin light ch 70.3 17 0.00059 34.3 9.5 55 401-455 135-197 (283)
421 4gyw_A UDP-N-acetylglucosamine 70.3 42 0.0014 37.8 13.8 150 541-713 8-168 (723)
422 2uvk_A YJHT; unknown function, 70.2 90 0.0031 31.0 18.4 56 59-114 61-128 (357)
423 3as5_A MAMA; tetratricopeptide 70.1 52 0.0018 28.2 13.1 72 635-715 96-169 (186)
424 2kc7_A BFR218_protein; tetratr 70.0 5.2 0.00018 31.2 4.7 58 399-457 6-65 (99)
425 1a17_A Serine/threonine protei 70.0 22 0.00075 30.3 9.4 55 401-455 21-75 (166)
426 2vsy_A XCC0866; transferase, g 69.5 19 0.00065 39.1 10.7 52 406-457 2-53 (568)
427 3u3w_A Transcriptional activat 68.6 41 0.0014 32.5 12.0 58 398-455 80-143 (293)
428 1cru_A Protein (soluble quinop 68.4 78 0.0027 33.2 14.7 62 94-156 27-98 (454)
429 3gyz_A Chaperone protein IPGC; 68.3 3.4 0.00012 36.1 3.4 54 401-455 44-98 (151)
430 3das_A Putative oxidoreductase 68.0 59 0.002 32.7 13.0 115 86-201 24-161 (347)
431 3upv_A Heat shock protein STI1 67.6 47 0.0016 26.8 10.7 30 538-567 68-97 (126)
432 2kck_A TPR repeat; tetratricop 67.5 6.5 0.00022 31.0 4.9 57 399-455 12-68 (112)
433 3upv_A Heat shock protein STI1 67.5 6.5 0.00022 32.4 5.0 57 400-456 11-67 (126)
434 3gw4_A Uncharacterized protein 67.3 41 0.0014 29.8 11.0 50 403-455 2-54 (203)
435 2l6j_A TPR repeat-containing p 67.0 7.4 0.00025 30.8 5.1 58 401-458 12-69 (111)
436 1ihg_A Cyclophilin 40; ppiase 66.7 29 0.001 35.3 10.7 55 401-455 231-301 (370)
437 3gyz_A Chaperone protein IPGC; 66.6 28 0.00097 30.0 9.2 93 428-567 37-129 (151)
438 2xcb_A PCRH, regulatory protei 66.5 5.2 0.00018 34.1 4.2 55 401-456 26-81 (142)
439 2lni_A Stress-induced-phosphop 66.0 9.4 0.00032 31.2 5.8 58 398-455 21-78 (133)
440 2pzi_A Probable serine/threoni 65.2 19 0.00066 40.3 9.7 81 401-482 441-524 (681)
441 2vgx_A Chaperone SYCD; alterna 65.1 5.6 0.00019 34.4 4.2 55 401-456 29-84 (148)
442 3qww_A SET and MYND domain-con 65.0 17 0.00058 38.1 8.6 24 544-567 384-407 (433)
443 4asc_A Kelch repeat and BTB do 64.9 1.1E+02 0.0036 29.9 21.3 176 66-256 7-222 (315)
444 4gcn_A Protein STI-1; structur 64.8 41 0.0014 27.7 9.6 24 544-567 85-108 (127)
445 2qfc_A PLCR protein; TPR, HTH, 63.9 60 0.0021 31.2 12.2 59 397-455 79-143 (293)
446 4gq2_M Nucleoporin NUP120; bet 63.7 1.3E+02 0.0043 35.1 16.5 75 183-257 237-319 (950)
447 3ma5_A Tetratricopeptide repea 63.6 5.5 0.00019 31.5 3.6 54 401-455 15-69 (100)
448 3sz7_A HSC70 cochaperone (SGT) 63.6 7.9 0.00027 33.8 5.0 56 401-456 19-74 (164)
449 3sz7_A HSC70 cochaperone (SGT) 63.3 54 0.0019 28.1 10.6 94 427-567 11-104 (164)
450 1p5q_A FKBP52, FK506-binding p 61.9 29 0.00099 34.7 9.5 55 401-455 155-224 (336)
451 2vgx_A Chaperone SYCD; alterna 61.6 43 0.0015 28.5 9.4 28 540-567 87-114 (148)
452 2pm7_A Protein WEB1, protein t 61.5 53 0.0018 33.8 11.2 28 393-420 143-170 (399)
453 1hxi_A PEX5, peroxisome target 61.4 11 0.00036 31.2 5.1 59 398-457 22-81 (121)
454 3mvd_K Regulator of chromosome 61.3 1.5E+02 0.0052 30.4 22.1 192 56-255 128-374 (423)
455 3ro3_A PINS homolog, G-protein 61.1 34 0.0012 28.6 8.7 55 401-455 17-77 (164)
456 3q49_B STIP1 homology and U bo 60.9 8.6 0.0003 31.9 4.6 57 400-456 16-72 (137)
457 3k9i_A BH0479 protein; putativ 60.4 6.5 0.00022 32.0 3.6 54 401-455 35-89 (117)
458 2ooe_A Cleavage stimulation fa 60.1 83 0.0029 33.4 13.5 174 406-598 292-494 (530)
459 2xcb_A PCRH, regulatory protei 59.9 58 0.002 27.1 9.9 28 540-567 84-111 (142)
460 1elw_A TPR1-domain of HOP; HOP 59.9 11 0.00036 30.0 4.8 57 399-455 10-66 (118)
461 2dba_A Smooth muscle cell asso 59.5 16 0.00054 30.6 6.1 57 399-455 34-93 (148)
462 4g1t_A Interferon-induced prot 59.2 1.6E+02 0.0056 30.1 22.1 43 526-568 231-273 (472)
463 4b4t_Q 26S proteasome regulato 58.9 43 0.0015 34.3 10.5 56 399-454 10-82 (434)
464 4gcn_A Protein STI-1; structur 57.1 7.4 0.00025 32.5 3.4 54 401-455 16-70 (127)
465 2vyi_A SGTA protein; chaperone 57.1 17 0.00059 29.2 5.8 55 401-455 20-74 (131)
466 1elw_A TPR1-domain of HOP; HOP 56.2 15 0.0005 29.1 5.1 58 400-457 45-102 (118)
467 3a9g_A Putative uncharacterize 56.2 1.7E+02 0.0057 29.3 20.9 57 96-156 137-215 (354)
468 1wao_1 Serine/threonine protei 55.8 8 0.00027 41.2 4.1 55 402-456 15-69 (477)
469 2lni_A Stress-induced-phosphop 55.5 11 0.00039 30.7 4.4 58 400-457 57-114 (133)
470 2kck_A TPR repeat; tetratricop 55.2 9.8 0.00033 29.9 3.8 57 400-456 47-106 (112)
471 3rkv_A Putative peptidylprolyl 55.2 11 0.00037 32.8 4.3 56 401-456 19-92 (162)
472 4g26_A Pentatricopeptide repea 54.4 49 0.0017 35.3 10.1 156 398-570 31-203 (501)
473 2xev_A YBGF; tetratricopeptide 54.3 19 0.00065 29.3 5.6 57 399-456 8-68 (129)
474 3q49_B STIP1 homology and U bo 53.9 87 0.003 25.3 10.7 29 539-567 74-102 (137)
475 3ott_A Two-component system se 52.3 2.9E+02 0.0098 30.9 24.3 148 56-213 420-590 (758)
476 4g26_A Pentatricopeptide repea 51.6 2.4E+02 0.0082 29.8 16.4 28 428-455 27-54 (501)
477 1kt0_A FKBP51, 51 kDa FK506-bi 51.6 45 0.0015 35.0 9.2 55 401-455 276-345 (457)
478 2vyi_A SGTA protein; chaperone 51.4 18 0.00062 29.1 5.0 46 428-473 13-61 (131)
479 2kat_A Uncharacterized protein 50.8 12 0.0004 30.2 3.6 54 401-455 27-81 (115)
480 3qky_A Outer membrane assembly 50.3 78 0.0027 29.6 10.1 56 401-456 60-126 (261)
481 3urz_A Uncharacterized protein 49.3 15 0.00051 33.6 4.4 56 401-457 62-118 (208)
482 1na0_A Designed protein CTPR3; 48.7 19 0.00064 28.7 4.6 55 401-455 17-71 (125)
483 2ooe_A Cleavage stimulation fa 48.2 66 0.0023 34.3 10.1 154 399-568 327-489 (530)
484 2uvk_A YJHT; unknown function, 47.4 2.2E+02 0.0074 28.1 15.0 35 185-219 311-352 (357)
485 3u3w_A Transcriptional activat 47.2 95 0.0033 29.8 10.3 55 401-455 123-183 (293)
486 3rkv_A Putative peptidylprolyl 46.7 20 0.0007 30.9 4.7 57 401-458 71-128 (162)
487 1qqe_A Vesicular transport pro 46.6 95 0.0032 29.8 10.2 24 544-567 39-62 (292)
488 1na0_A Designed protein CTPR3; 46.4 25 0.00084 27.9 5.0 58 399-456 49-106 (125)
489 2dba_A Smooth muscle cell asso 46.0 16 0.00056 30.4 3.9 55 401-456 73-128 (148)
490 4a1s_A PINS, partner of inscut 45.9 44 0.0015 33.9 7.9 47 409-455 199-251 (411)
491 2ifu_A Gamma-SNAP; membrane fu 45.6 1.4E+02 0.0047 28.9 11.3 150 404-567 2-180 (307)
492 1elr_A TPR2A-domain of HOP; HO 45.4 16 0.00053 29.6 3.6 56 400-455 11-66 (131)
493 2qfc_A PLCR protein; TPR, HTH, 45.3 1.2E+02 0.0042 28.9 10.8 54 402-455 124-183 (293)
494 4fhn_B Nucleoporin NUP120; pro 45.1 38 0.0013 40.5 8.0 34 95-128 239-272 (1139)
495 1a17_A Serine/threonine protei 44.9 20 0.00068 30.6 4.3 57 400-456 54-110 (166)
496 3k9i_A BH0479 protein; putativ 44.8 13 0.00044 30.2 2.8 51 406-456 3-56 (117)
497 1hxi_A PEX5, peroxisome target 44.6 17 0.00057 29.9 3.6 56 401-457 59-115 (121)
498 2xev_A YBGF; tetratricopeptide 44.4 33 0.0011 27.7 5.5 56 401-456 47-105 (129)
499 4gq2_M Nucleoporin NUP120; bet 43.8 65 0.0022 37.5 9.6 34 95-128 237-270 (950)
500 3f7f_A Nucleoporin NUP120; nuc 43.5 2.6E+02 0.0088 31.1 13.5 74 183-257 223-307 (729)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=7.9e-23 Score=220.88 Aligned_cols=190 Identities=21% Similarity=0.323 Sum_probs=162.3
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+.|+| |+|+++++++|+.||+|++||. ++.....+.+|.+.|++++|+|+|++|++|+.||+|++||+.++.+ ..+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 44555 7778999999999999999999 6677789999999999999999999999999999999999998665 457
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
..|. .|.+++|+|+ +..+++|+.||.|++|+.. .+.....+.+|...|.++.|+ |.+++++ .|+.|++||
T Consensus 189 ~~h~~~V~~v~~~p~-----~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPN-----GDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CCCSSCEEEEEECSS-----SSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEeCC-----CCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 7888 9999999999 8999999999999999986 566777888899999999998 6777776 799999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceeecC---------------------CCeEEEE-eCCeEEEEEEeeC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVWQD---------------------DTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~---------------------~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+.+++....+..+. ..+.++.|.. +..+++| .|+.|++||++++
T Consensus 263 ~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 263 VATKECKAELREHR------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp TTTCCEEEEECCCS------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred CCCCceeeEecCCC------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99998887765443 2355666632 5678888 8999999998764
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=7.8e-23 Score=211.43 Aligned_cols=188 Identities=18% Similarity=0.158 Sum_probs=155.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+|+|+++++++|+.||+|++||. ++..+..+..|..+|.+++|+|++++|++|+.||+|++||+.+++. ..+..|. .
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 99 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 68899999999999999999999 5666788999999999999999999999999999999999998765 4688888 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCc
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~ 211 (724)
|++++|+|+ +.++++|+.||+|++|+..-.......+.+|.+.|.+++|+ +.+++++ .|+.|++||++++.
T Consensus 100 v~~~~~~~~-----~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 100 IRSIAVHPT-----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp EEEEEECSS-----SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred EEEEEEcCC-----CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999999 89999999999999999762224456678899999999998 3567666 79999999998776
Q ss_pred eEEEecCCCCCCCCCCCCCceee---cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW---QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
....+.... ...+..+.| +++..|++| .|++|++||++++
T Consensus 175 ~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 175 PNFTLTTGQ-----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp CSEEEECCC-----TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred ccceeccCC-----cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 655443322 112445555 256788888 8999999998764
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=2.2e-22 Score=207.97 Aligned_cols=188 Identities=19% Similarity=0.253 Sum_probs=157.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce--EEEeCCC-
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK--MKFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~- 134 (724)
+|++++++|++|+.||+|++||. ++..+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.. ..+..|.
T Consensus 62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 48889999999999999999999 6777889999999999999999999999999999999999988643 3567788
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEe----CCEEEEE-cCCcEEEEEcC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR----TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~----~~~la~~-~d~~i~i~d~~ 208 (724)
.|.+++|+|. ++..+++|+.||.|++|+.+ .+.....+ ..+...+..+.|. +.+++++ .|+.|++||++
T Consensus 142 ~v~~v~~~p~----~~~~l~sgs~D~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPK----DPSTFASGCLDRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTT----CTTEEEEEETTSEEEEEETT-CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred cEEEEEECCC----CCCEEEEEeCCCeEEEEECC-CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 9999999995 26899999999999999975 33333333 4566789999997 3567666 79999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++++..+..+. ..+..+.| +++..|++| .|++|++||+.++.
T Consensus 217 ~~~~~~~~~~h~------~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 217 TKSCVATLEGHM------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp TTEEEEEEECCS------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCccceeeCCCC------CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999988876654 24667888 677888888 89999999987644
No 4
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=4.7e-22 Score=207.07 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=156.4
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCC------CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLG------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+++++ +++|++|+.||+|++|++.+ ..+..+.+|...|++++|+|+|++|++|+.||+|++||+.+++. ..+
T Consensus 24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103 (319)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE
Confidence 46664 47999999999999999842 23577899999999999999999999999999999999999775 467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC--------CEEEEE-cCC
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--------SLIAWA-NDA 200 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~--------~~la~~-~d~ 200 (724)
..|. +|.+++|+|+ +..+++|+.||.|++|+.. +.....+.+|.+.|.++.|.+ ..++++ .|+
T Consensus 104 ~~h~~~v~~~~~~~~-----~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~ 176 (319)
T 3frx_A 104 VGHKSDVMSVDIDKK-----ASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176 (319)
T ss_dssp ECCSSCEEEEEECTT-----SCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTS
T ss_pred ccCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC
Confidence 8888 9999999999 8999999999999999874 566677788999999999973 245555 799
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|++||+++++....+..+. ..+.+++| +++..|++| .|+.|++||+.++
T Consensus 177 ~i~~wd~~~~~~~~~~~~h~------~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFIGHN------SNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp CEEEEETTTTEEEEEECCCC------SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEEECCcchhheeecCCC------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999988777655443 34778888 688889888 8999999998764
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=2.5e-22 Score=216.93 Aligned_cols=191 Identities=13% Similarity=0.166 Sum_probs=163.0
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+.|.+ |+++++++++|+.||+|++||. .+..+..+.+|...|++++|+|+|++|++|+.||+|++||+.++.+ ..+
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 45655 6678999999999999999999 4566788899999999999999999999999999999999998765 467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC------------------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT------------------ 191 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~------------------ 191 (724)
..|. .|.+++++|+ +..+++|+.||.|++|+.. .+.....+..|...|.+++|++
T Consensus 231 ~~h~~~v~~~~~~~~-----g~~l~s~s~D~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (410)
T 1vyh_C 231 TGHREWVRMVRPNQD-----GTLIASCSNDQTVRVWVVA-TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304 (410)
T ss_dssp ECCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred eCCCccEEEEEECCC-----CCEEEEEcCCCeEEEEECC-CCceeeEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence 8888 9999999999 8999999999999999986 4566667788999999999973
Q ss_pred ----CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 192 ----SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 192 ----~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+++++ .|+.|++||++++.++..+..+. ..+.++.| +++..|++| .|+.|++||+.++.
T Consensus 305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEECCS------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 356666 79999999999999888775543 35778888 677888888 89999999986543
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.9e-22 Score=208.85 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=161.7
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
..+|+|+++++++|+.+|.|++|+. .+.....+..|...|.+++|+|+|++|++|+.||.|++||+.+++.. .+..|.
T Consensus 127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~ 206 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206 (321)
T ss_dssp CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC
Confidence 3578999999999999999999999 56667788889999999999999999999999999999999987654 577788
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~ 210 (724)
+|++++|+|+ ++++++|+.||.|++|+.. .+.....+.+|.+.|.+++|+ +.+++++ .|+.|++||+.++
T Consensus 207 ~~v~~l~~spd-----~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 207 MPIRSLTFSPD-----SQLLVTASDDGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp SCCCEEEECTT-----SCEEEEECTTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CceeEEEEcCC-----CCEEEEEcCCCeEEEEECC-CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999 8999999999999999986 456667788899999999999 5677766 7999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
+++..+..+. ..+.+++| +++..|+++ .|+.|++||.
T Consensus 281 ~~~~~~~~h~------~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 281 TCVHTFFDHQ------DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECCCS------SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEEcCCC------CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9988875543 34778899 677888887 8999999985
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.90 E-value=4.7e-22 Score=207.22 Aligned_cols=190 Identities=18% Similarity=0.287 Sum_probs=163.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
..|.+ +++++..+++|+.||+|++||+ ++..+..+..|...+.+++|+|+|++|++|+.||.|++|++.++.. ..+
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 34555 6668889999999999999999 5677788889999999999999999999999999999999998655 456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
..+. .|.+++|+|+ ++++++|+.||.|++|+.. .+.....+.+|..+|.+++|+ +.+++++ .|+.|++||
T Consensus 161 ~~~~~~v~~~~~spd-----g~~lasg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 161 DTRGKFILSIAYSPD-----GKYLASGAIDGIINIFDIA-TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp ECSSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred cCCCceEEEEEECCC-----CCEEEEEcCCCeEEEEECC-CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 6777 9999999999 8999999999999999986 566677788899999999999 6788877 699999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+++++....+..+. ..+.+++| +++..|++| .|++|++||+.++
T Consensus 235 ~~~~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 235 VQHANLAGTLSGHA------SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp TTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCcceeEEEcCCC------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99988887765443 35778899 678888888 8999999998754
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.90 E-value=3.2e-22 Score=208.37 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=152.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Ce
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v 136 (724)
+++++++++++|+.||+|++||+ ++..+..+.+|...|.+++|+|++.+|++|+.||+|++||+....+..+..|. .|
T Consensus 72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v 151 (319)
T 3frx_A 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151 (319)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcE
Confidence 57889999999999999999999 66677889999999999999999999999999999999999887777888888 99
Q ss_pred eEEEeCCCCC-CCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 137 KAISLDPDYT-RKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 137 ~~v~~~p~~~-~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
.+++|+|... ..++..+++|+.||.|++|+.. .......+.+|.++|.+++|+ |.+++++ .|+.|++||+.+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999621 1124589999999999999885 445556677899999999999 6778777 799999999999988
Q ss_pred EEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEe
Q 004914 213 ITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIK 254 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~ 254 (724)
+..+..+. .+.+++| +++..++++.++.+++|++.
T Consensus 231 ~~~~~~~~-------~v~~~~~sp~~~~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 231 MYTLSAQD-------EVFSLAFSPNRYWLAAATATGIKVFSLD 266 (319)
T ss_dssp EEEEECCS-------CEEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred EEEecCCC-------cEEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence 77765432 2445556 45555555555566666653
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.90 E-value=6.9e-22 Score=207.81 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=159.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-----eEEEeC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-----KMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-----~~~~~~ 132 (724)
+|+++++++++|+.||+|++||. ++..+..+..|...|.+++|+|+|+++++|+.||.|++|++.++. ...+..
T Consensus 62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence 47789999999999999999998 677788889999999999999999999999999999999998742 234677
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
|. .|.++.|+|+ ..+++|+.||.|++|+.. .+.....+.+|.++|.+++|+ +.+++++ .|+.|++||++
T Consensus 142 h~~~v~~~~~~~~------~~l~s~s~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~ 214 (340)
T 1got_B 142 HTGYLSCCRFLDD------NQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214 (340)
T ss_dssp CSSCEEEEEEEET------TEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCccEEEEEECCC------CcEEEEECCCcEEEEECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 88 9999999988 569999999999999985 566677788899999999999 5677766 79999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++..+..+..+. ..+.+++| +++..|++| .|++|++||++++
T Consensus 215 ~~~~~~~~~~h~------~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 215 EGMCRQTFTGHE------SDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp TCSEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCeeEEEEcCCc------CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 998888765443 34778889 688888888 8999999998764
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.90 E-value=8.5e-22 Score=207.10 Aligned_cols=189 Identities=12% Similarity=0.131 Sum_probs=148.6
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEec-CCCee----EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDF-LGNQV----KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~----~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.|.+ |+++ +.+++|+.||+|++||+ +++.+ ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++..
T Consensus 84 ~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 84 GVADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp CEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3555 5665 47889999999999999 44433 234589999999999999999999999999999999997764
Q ss_pred -EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec--cCCCCeEEEEEe---CCEEEEE-cCC
Q 004914 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR---TSLIAWA-NDA 200 (724)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~--~~~~~V~~l~~~---~~~la~~-~d~ 200 (724)
.+.+|. .|++++|+|+ +...|++|+.||.|++|+.+ .+.....+. .+...+.+++|+ +.+++++ .|+
T Consensus 163 ~~~~~h~~~V~~~~~~~~----~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPH----KDSVFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp EEECCCSSCEEEEEECSS----CTTEEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred EEEcCcCCceEEEEecCC----CCCceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 678888 9999999998 23688999999999999886 444444443 355678999998 4677776 699
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCC-CeEEEE-eCCeEEEEEEeeC
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDD-TLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~-~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|++||+++++.+..+..+. ..+.+++| +++ .+|++| .|++|++||+.++
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~------~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHS------QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEEEESCC--CCEEEECCS------SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred cEEEEECCCCcEEEEEcCCC------CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 99999999999888776554 34778899 455 567777 8999999997654
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.90 E-value=3.8e-22 Score=209.77 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=154.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceE-E
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM-K 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (724)
+.|.+ |+|+|++|++|+.||+|++||+ ++..+..+.+|.+.|++++|++++. .++||+.||+|++||+++++.. .
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 207 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ 207 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee
Confidence 45655 6789999999999999999999 5667889999999999999999985 7899999999999999986654 3
Q ss_pred E--eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEE-cCCcE
Q 004914 130 F--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWA-NDAGV 202 (724)
Q Consensus 130 ~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~-~d~~i 202 (724)
+ ..+. .+.+++|+|+ +++++++|+.||.|++|+.+ .+.....+.+|.+.|++++|+ + .+|+++ .|++|
T Consensus 208 ~~~~~~~~~~~~~~~~p~----~~~~l~sg~~dg~v~~wd~~-~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQ----QSEVFVFGDENGTVSLVDTK-STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp CC----CCCEEEEEECSS----CTTEEEEEETTSEEEEEESC-C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred eecceeeccceeeeecCC----CCcceEEeccCCcEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 3 3344 7999999997 46789999999999999986 567778889999999999998 3 567766 79999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCC-eEEEE-eCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDT-LLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~-~l~~g-~d~~i~vw~~~~~~ 257 (724)
++||+.+++.... . .|...+.+++| +++. +|++| .|++|++|++.+..
T Consensus 283 ~vwd~~~~~~~~~-~------~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 283 AVLDSSLSELFRS-Q------AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEECTTCCEEEEE-C------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEECCCCcEEEE-c------CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999876643 2 34456889999 4554 56666 89999999997643
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.90 E-value=5.9e-22 Score=205.44 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=161.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+|+|+++++++|+.||.|++|+. ++.....+.+|...|.+++|+|++++|++|+.||.|++||+.++.. ..+..|. .
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 109 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 109 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 58889999999999999999999 6777788999999999999999999999999999999999998765 4678888 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|.+++|+|+ ++.+++|+.||.|++|+.. .+.....+..|.++|.++.|+ +.+++++ .|+.|++||+++++.
T Consensus 110 v~~~~~~~~-----~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 110 VFCCNFNPQ-----SNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183 (312)
T ss_dssp EEEEEECSS-----SSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEEcCC-----CCEEEEEeCCCcEEEEECC-CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999 8999999999999999986 456667778899999999998 6777766 799999999999888
Q ss_pred EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+.... ...+..+.| +++..+++| .|+.|++||++++.
T Consensus 184 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 184 LKTLIDDD-----NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp EEEECCSS-----CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred eeEEeccC-----CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 77654332 123556788 677888888 89999999987643
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.90 E-value=2.3e-21 Score=204.20 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=154.4
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCe-e---EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---eEEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQ-V---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---KMKF 130 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~-~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~~~~ 130 (724)
.+|+|+|++||+|+.||+|++||..+.. . ....+|...|++++|+|+|++|++|+.||+|++|++.++. ...+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 4689999999999999999999995543 2 2236899999999999999999999999999999998754 3467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i 204 (724)
.+|. +|.+++|+|+ +++|++|+.||.|++|+..-.. .....+..|...|.+++|+ +.+++++ .|+.|++
T Consensus 102 ~~h~~~v~~v~~sp~-----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 102 EGHENEVKSVAWAPS-----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176 (345)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred cCCCCCceEEEEeCC-----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence 7888 9999999999 8999999999999999875221 2245567899999999999 5667666 7999999
Q ss_pred EEcCCCceE--EEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 205 YDAANDQRI--TFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~--~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
||..++... ..+.. |...+.+++| +++..|++| .|++|++|+.....
T Consensus 177 w~~~~~~~~~~~~~~~------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 177 YREEEDDWVCCATLEG------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227 (345)
T ss_dssp EEEETTEEEEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred EEecCCCEEEEEEecC------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence 999887543 34433 3345788999 678889888 89999999987543
No 14
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=2e-21 Score=200.16 Aligned_cols=189 Identities=15% Similarity=0.201 Sum_probs=152.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC---CeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCCc---eEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG---NQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDE---KMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~---~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~---~~~~ 130 (724)
+|+++|++||+|+.||+|++||..+ ..+..+.+|.++|++++|+++ |++|+||+.||+|++||+.++. ...+
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 5788999999999999999999953 456889999999999999864 8999999999999999998763 3456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeC---------------CE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRT---------------SL 193 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~---------------~~ 193 (724)
..|. +|.+++|+|+- .+..+++|+.||.|++|+..-.. .....+..|...|.+++|++ .+
T Consensus 96 ~~h~~~v~~v~~~p~~---~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 96 AVHSASVNSVQWAPHE---YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp CCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred ecCCCceeEEEeCcCC---CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence 7777 99999999961 15799999999999999875322 12456678999999999984 36
Q ss_pred EEEE-cCCcEEEEEcCCCc----eEEEecCCCCCCCCCCCCCceeec-C---CCeEEEE-eCCeEEEEEEeeC
Q 004914 194 IAWA-NDAGVKVYDAANDQ----RITFIERPRGSPRPELLLPHLVWQ-D---DTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~----~~~~i~~~~~~~~~~~~~~~l~~~-~---~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++++ .|+.|++||+++++ ....+.. |...+.+++|+ + +..|++| .|++|++|+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEG------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEECC------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEecC------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 7766 79999999998765 3344433 44468889994 4 3678888 8999999999763
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.89 E-value=3.8e-21 Score=203.35 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=161.5
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD------ 125 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~------ 125 (724)
+.|.| |+|++++|++|+.||+|++||. ++.....+..|...|.+++|+|+|..+++|+.|+.+++|++...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 34555 7778999999999999999998 66777888889999999999999999999999999999998642
Q ss_pred -ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe----CCEEEEE-c
Q 004914 126 -EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWA-N 198 (724)
Q Consensus 126 -~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~----~~~la~~-~ 198 (724)
....+..|. .|.+++|+|+ +..+++|+.||+|++|+.. .+.....+.+|...|.++.|+ |.+++++ .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~-----~~~l~t~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNS-----DMQILTASGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSS-----SSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccceeeeccCCcEEEEEEeCC-----CCEEEEEeCCCcEEEEeCC-CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 234566788 9999999999 7899999999999999986 566677888999999999997 3677766 7
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|+.|++||+++++++..+..+. ..+.+++| +++..+++| .|++|++||++.+
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~------~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHE------SDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCeEEEEECCCCcEEEEecCCC------CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999888765443 35778888 678888888 8999999998754
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.89 E-value=5.6e-21 Score=201.11 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=146.8
Q ss_pred cCCEEEEEeCCCeEEEEecCC--------CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCC
Q 004914 63 AERMIALGTHAGTVHILDFLG--------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYH 133 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~~~--------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~ 133 (724)
++++|++|+.||+|++||... .....+.+|...|++++|+|++.++++|+.||+|++||+.++.. ..+..|
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 788999999999999999842 23567889999999999999999999999999999999998765 467888
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe---ccCCCCeEEEEEeC------------CEEEEE
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL---HSGEGPVHVVKWRT------------SLIAWA 197 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~~------------~~la~~ 197 (724)
. +|.+++|+|+ ++.+++|+.||.|++|+.. +...... ..|...|.+++|++ .+++++
T Consensus 118 ~~~v~~v~~sp~-----~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 118 QSEVYSVAFSPD-----NRQILSAGAEREIKLWNIL--GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190 (343)
T ss_dssp CSCEEEEEECSS-----TTEEEEEETTSCEEEEESS--SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred CCcEEEEEECCC-----CCEEEEEcCCCEEEEEecc--CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE
Confidence 8 9999999999 8999999999999999875 3222222 25788899999983 466666
Q ss_pred -cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
.|+.|++||. .++....+..+. ..+.+++| +++..|++| .|+.|++||+..
T Consensus 191 ~~d~~i~iwd~-~~~~~~~~~~h~------~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 191 GWDGRLKVWNT-NFQIRYTFKAHE------SNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp ETTSEEEEEET-TTEEEEEEECCS------SCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred cCCCEEEEEcC-CCceeEEEcCcc------ccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 7999999994 445555544433 34778899 688889988 899999999854
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.8e-21 Score=198.83 Aligned_cols=192 Identities=13% Similarity=0.172 Sum_probs=149.3
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCC---eeEEE-cC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC----
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGN---QVKEF-PA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD---- 125 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~---~~~~~-~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~---- 125 (724)
+.|.++++++.+||+|+.||+|++||+... ....+ .+ |.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence 456777776779999999999999999542 34445 44 9999999999999999999999999999998532
Q ss_pred ---c-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC---ccceEeccCCCCeEEEEEe--CCEEE
Q 004914 126 ---E-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR--TSLIA 195 (724)
Q Consensus 126 ---~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~--~~~la 195 (724)
. ...+..|. +|.+++|+|+ +++|++|+.||.|++|+..-.+ .....+.+|.+.|.+++|+ +.+++
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~-----g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 169 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSND-----GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTT-----SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred ccceeEEEEcCCCCcEEEEEECCC-----CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEE
Confidence 2 33567788 9999999999 8999999999999999874222 2345677899999999998 57777
Q ss_pred EE-cCCcEEEEEcCCC--ceEEEecCCCCCCCCCCCCCceee-cC--CCeEEEE-eCCeEEEEEEeeCC
Q 004914 196 WA-NDAGVKVYDAAND--QRITFIERPRGSPRPELLLPHLVW-QD--DTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 196 ~~-~d~~i~i~d~~~~--~~~~~i~~~~~~~~~~~~~~~l~~-~~--~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++ .|+.|++||..++ +++..+..+. ..+.++.| ++ +..|++| .|++|++|++..+.
T Consensus 170 s~s~D~~i~iW~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 170 SSSYDDTVRIWKDYDDDWECVAVLNGHE------GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCS------SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred EEcCCCeEEEEECCCCCeeEEEEccCCC------CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 77 6999999999876 4555554433 34677888 33 4577777 89999999998753
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.88 E-value=1.7e-21 Score=206.13 Aligned_cols=190 Identities=16% Similarity=0.220 Sum_probs=157.7
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEE-
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMK- 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~- 129 (724)
+.|.+ |+|++++|++|+.||+|++||. ++..+..+.+|...|++++|++++. .+++++.||.|++||+++++...
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 44555 6789999999999999999999 5666788999999999999999885 78999999999999999866432
Q ss_pred E--eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEE-cCCcE
Q 004914 130 F--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWA-NDAGV 202 (724)
Q Consensus 130 ~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~-~d~~i 202 (724)
+ ..+. .+.+++|+|+ ++.++++|+.||.|++|+.. .+.....+..|.++|++++|+ + .+|+++ .|+.|
T Consensus 220 ~~~~~~~~~v~~v~~sp~----~~~~la~g~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPE----KDDTFACGDETGNVSLVNIK-NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp CCCTTCCSCEEEEEECTT----STTEEEEEESSSCEEEEESS-CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred eeeccccccccchhhhhc----ccceEEEeecccceeEEECC-CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 2 3344 8999999998 46789999999999999986 567777888899999999998 3 567766 79999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceeec--CCCeEEEE-eCCeEEEEEEeeC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++||+.+++.+..+ .|...+.+++|+ ++..|++| .|++|++|++.+.
T Consensus 295 ~iwd~~~~~~~~~~-------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 295 AVLDADFSEVFRDL-------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEECTTSCEEEEEC-------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEECCCCcEeEEC-------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999887653 244468889994 67888887 8999999999654
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=6.2e-21 Score=203.82 Aligned_cols=199 Identities=14% Similarity=0.205 Sum_probs=152.5
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEec---------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL--------- 122 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~--------- 122 (724)
+.|.| |+|++++|++|+.||+|++||. ++.....+..|...|.+++|+|+|++|++|+.|+.+++||+
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 34544 7889999999999999999998 56666777888888888888887776666666666666654
Q ss_pred -----------------------------------------cCCceEE-E-----eCCC-CeeEEEeCCCCCCCCCCEEE
Q 004914 123 -----------------------------------------FTDEKMK-F-----DYHR-PMKAISLDPDYTRKMSRRFV 154 (724)
Q Consensus 123 -----------------------------------------~~~~~~~-~-----~~~~-~v~~v~~~p~~~~~~~~~l~ 154 (724)
.++.... + ..|. .|.+++|+|. ++..++
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~ 222 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL----NANMFI 222 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS----SCCEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC----CCCEEE
Confidence 3332221 2 3455 7888999874 278999
Q ss_pred EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCC-CCCCCCCC
Q 004914 155 AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGS-PRPELLLP 230 (724)
Q Consensus 155 ~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~-~~~~~~~~ 230 (724)
+|+.||.|++|+.+..+.....+.+|.+.|.+++|+ +.+++++ .|++|++||+++++.+..+..+... ..+...+.
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE
Confidence 999999999999864556677888999999999999 6788877 6999999999999988877654322 22233467
Q ss_pred ceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 231 HLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 231 ~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++| +++..+++| .|+.|++||+..+.
T Consensus 303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 8889 688999999 89999999976543
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.88 E-value=5.7e-21 Score=200.79 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=153.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+.+.| +++++ .+++|+.||+|++||+ ++..+..+.+|.+.|++++|+|+++++++|+.||.|++||+.++.. ..+
T Consensus 144 ~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~ 222 (340)
T 1got_B 144 GYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222 (340)
T ss_dssp SCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred ccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Confidence 34555 44444 5889999999999999 5666788999999999999999999999999999999999998765 467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec--cCCCCeEEEEEe--CCEEEEE-cCCcEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~--~~~~~V~~l~~~--~~~la~~-~d~~i~i 204 (724)
..|. +|++++|+|+ ++.|++|+.||.|++|+.+ .+.....+. .+...|++++|+ |.+++++ .|+.|++
T Consensus 223 ~~h~~~v~~v~~~p~-----~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 223 TGHESDINAICFFPN-----GNAFATGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCcCCEEEEEEcCC-----CCEEEEEcCCCcEEEEECC-CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 7888 9999999999 8999999999999999875 333333332 234579999999 6777777 7999999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
||+.+++.+..+..+. ..+.++.| +++..|++| .|+.|++||
T Consensus 297 wd~~~~~~~~~~~~h~------~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKADRAGVLAGHD------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTCCEEEEEECCS------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccCcEeeEeecCC------CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998888776543 35778899 678888888 899999996
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.88 E-value=8.9e-21 Score=200.47 Aligned_cols=182 Identities=18% Similarity=0.240 Sum_probs=153.3
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
+|+++++.|++|+.||+|++||+ ++..+..+.+|...|.+++|+| +|++|++|+.||+|++||++++... .+..|.
T Consensus 161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~ 240 (354)
T 2pbi_B 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240 (354)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 47788999999999999999999 6777889999999999999987 5789999999999999999987754 577788
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
.|++++|+|+ +..+++|+.||+|++|+.+ .+.....+.. +...+.+++|+ |.+++++ .|+.|++||+.
T Consensus 241 ~~v~~v~~~p~-----~~~l~s~s~D~~v~lwd~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 241 SDVNSVRYYPS-----GDAFASGSDDATCRLYDLR-ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp SCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeEEEEEeCC-----CCEEEEEeCCCeEEEEECC-CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 9999999999 8999999999999999875 3333333332 33578899999 6788777 79999999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
+++.+..+..+ ...+.+++| +++..|++| .|++|++|+
T Consensus 315 ~~~~~~~l~~h------~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 315 KGSRVSILFGH------ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCSEEEEECCC------SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCceEEEEECC------CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99888776544 345788999 788889988 899999995
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.4e-21 Score=200.06 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=147.2
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecC--------CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFL--------GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~--------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~ 124 (724)
+.|.+ |+|++++|++|+.||+|++|+.. ...+..+.+|.+.|++++|+|+|++|++|+.||+|++||+..
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 34544 77899999999999999999983 223567889999999999999999999999999999999953
Q ss_pred -C---c-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEeC----C
Q 004914 125 -D---E-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRT----S 192 (724)
Q Consensus 125 -~---~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~~----~ 192 (724)
+ + ...+..|. .|.+++|+|+ +..|++|+.||.|++|+.. .+ .....+.+|.+.|.+++|++ .
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~-----~~~l~s~s~D~~i~iW~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPS-----EALLASSSYDDTVRIWKDY-DDDWECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSS-----SSEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred CCCCeEEEEEeccCCCceEEEEECCC-----CCEEEEEcCCCeEEEEECC-CCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence 2 2 23567788 9999999999 8999999999999999864 22 34567788999999999983 3
Q ss_pred EEEEE-cCCcEEEEEcCCC--------ceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 193 LIAWA-NDAGVKVYDAAND--------QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 193 ~la~~-~d~~i~i~d~~~~--------~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.++++ .|++|++||+.++ .....+.. .|...+.+++|+++..+++| .|+.|++|+..++
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-----VHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-----CCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-----ccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 56655 7999999998754 22222221 13446788999666677777 8999999998753
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-19 Score=192.48 Aligned_cols=187 Identities=15% Similarity=0.183 Sum_probs=154.3
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeCCCCe
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYHRPM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v 136 (724)
+|++++++|++|+.||.|++||. ++..+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++... +....+|
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v 118 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPV 118 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCe
Confidence 58889999999999999999998 677788999999999999999999999999999999999999877654 4533399
Q ss_pred eEEEeCCCCCCCCCCEEEEecCC-----CeEEEEecccCC----------ccceEeccCCC--CeEEEEEe--CCEEEEE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLA-----GHLYLNSKKWLG----------YRDQVLHSGEG--PVHVVKWR--TSLIAWA 197 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~d-----g~v~l~~~~~~~----------~~~~~l~~~~~--~V~~l~~~--~~~la~~ 197 (724)
.+++|+|+ +..+++++.+ |.+.+|+..... .....+..+.+ .+.+++|+ +.+++++
T Consensus 119 ~~~~~~~~-----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 119 KRVEFSPC-----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp EEEEECTT-----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred EEEEEccC-----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 99999999 8999999998 999999865322 12333444555 89999999 5677766
Q ss_pred -cCCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 198 -NDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 198 -~d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|+.|++||+++ ++.+..+..+. ..+.++.| +++..|+++ .++.|++||++++
T Consensus 194 ~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 194 HKDGKISKYDVSNNYEYVDSIDLHE------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp ETTSEEEEEETTTTTEEEEEEECCS------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCEEEEEECCCCcEeEEEEecCC------CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 789999999998 67776665543 24677888 678888888 8899999998764
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.87 E-value=5e-20 Score=190.88 Aligned_cols=188 Identities=19% Similarity=0.224 Sum_probs=154.3
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+|+|++++|++|+.||.|++||. ++..+..+.+|...|.+++|+|+++++++|+.||.|++||+.+++. ..+..|. +
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 47789999999999999999999 6677888999999999999999999999999999999999998665 4577777 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
|.+++|+|+ +..+++|+.||.|++|+.. .+.....+ ..+..++..++|+ +.+++++ .|+.|++||+++++
T Consensus 152 v~~~~~~~~-----~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 152 VSAVHFNRD-----GSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp EEEEEECTT-----SSEEEEEETTSCEEEEETT-TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred EEEEEEcCC-----CCEEEEEeCCCcEEEEECC-CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999 8999999999999999986 34433333 4466789999999 5677766 79999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceee--cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+..+..+.... ......+ .++..+++| .|+.|++||+.++
T Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 226 CLKTYTGHKNEK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEEEECSSCCSS----SCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEEEEEecCCce----EEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 888776554221 1112222 567788888 8999999998654
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.87 E-value=1.1e-20 Score=198.77 Aligned_cols=190 Identities=15% Similarity=0.203 Sum_probs=151.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe---CCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD---YHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~---~~~ 134 (724)
+|++++.++++|+.||+|++||+ ++..+..+.+|...|.+++|+|+|++|++|+.||+|++||+......... .|.
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS 162 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC
Confidence 46778999999999999999999 67778889999999999999999999999999999999999865444433 566
Q ss_pred -CeeEEEeCCCCCC-----CCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEE
Q 004914 135 -PMKAISLDPDYTR-----KMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVY 205 (724)
Q Consensus 135 -~v~~v~~~p~~~~-----~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~ 205 (724)
.|.+++|+|+... ..+..+++|+.||.|++|+.. ......+..|.++|.+++|+ |++++++ .|+.|++|
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 8999999998210 002689999999999999853 44556677899999999999 6788777 69999999
Q ss_pred EcCC-CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 206 DAAN-DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 206 d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
|+.. +.....+... ..+.+++| +++..+++|.++.|++|++.++.
T Consensus 241 d~~~~~~~~~~~~~~-------~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 241 DILNLTYPQREFDAG-------STINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp ESSCCSSCSEEEECS-------SCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred ECCCCcccceeecCC-------CcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 9953 3333333221 23677888 67777877799999999987654
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.87 E-value=1.1e-19 Score=190.35 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=151.4
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCC------eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-E
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGN------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-F 130 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~ 130 (724)
+|+|+ +++|++|+.||+|++||+... ....+.+|...|++++|+|+|++|++|+.||.|++|+........ .
T Consensus 45 ~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~ 124 (340)
T 4aow_A 45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF 124 (340)
T ss_dssp EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee
Confidence 46676 679999999999999998432 256788999999999999999999999999999999998866543 4
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe----CCEEEEE-cCCcEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWA-NDAGVKV 204 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~----~~~la~~-~d~~i~i 204 (724)
..+. .+....++|. +..+++|+.||.+++|+.............|...+..++|+ ..+++++ .|+.|++
T Consensus 125 ~~~~~~~~~~~~~~~-----~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 125 VGHTKDVLSVAFSSD-----NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp ECCSSCEEEEEECTT-----SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred cCCCCceeEEEEeec-----CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 4455 8888999998 79999999999999998752223333445688899999998 2455555 7999999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
||+.+++.+..+..+. ..+.+++| +++..|++| .|+.|++||+++.
T Consensus 200 ~d~~~~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 200 WNLANCKLKTNHIGHT------GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EETTTTEEEEEECCCS------SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EECCCCceeeEecCCC------CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 9999999888765443 34778888 678888888 8999999998753
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.87 E-value=4.1e-20 Score=194.62 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=152.9
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--- 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--- 126 (724)
..|.+ |+|++++|++|+.||+|++|+.... .+..+.+|...|++++|+|+|++|++|+.||+|++||+.++.
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 34544 7789999999999999999998543 357789999999999999999999999999999999998753
Q ss_pred -eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEe--CCEEEEE-cC
Q 004914 127 -KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR--TSLIAWA-ND 199 (724)
Q Consensus 127 -~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~--~~~la~~-~d 199 (724)
...+..|. .|.+++|+|+ +.++++|+.||.|++|+.. .+ .....+.+|.++|++++|+ |++++++ .|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~-----~~~l~s~s~d~~i~~w~~~-~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPS-----QELLASASYDDTVKLYREE-EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp EEEEECCCCSCEEEEEECSS-----SSCEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEecCcCCCeEEEEECCC-----CCEEEEEeCCCcEEEEEec-CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 23467777 9999999999 8999999999999999875 22 2345677899999999999 6777776 79
Q ss_pred CcEEEEEcCCCc---------------eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQ---------------RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~---------------~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.|++|+..... ++..+. ..+...+..++| +++..|+++ .|+.|++|+...+.
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-----GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-----SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEec-----CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 999999974321 111111 113445778888 667778877 89999999997654
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.87 E-value=8.2e-20 Score=196.03 Aligned_cols=191 Identities=16% Similarity=0.230 Sum_probs=149.8
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCc------------------cceeEEEEcCCCCEEEEEeCCCCEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHT------------------AAVNDLSFDVDGEYVGSCSDDGSVVI 119 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~------------------~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (724)
+|+|+|++||+|+ ++.+++|+. ++..+..+..|. ..|++++|+|+|++|++|+.||.|++
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~i 149 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 149 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEE
Confidence 5889999999987 689999998 666666665543 24999999999999999999999999
Q ss_pred EeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEE
Q 004914 120 NSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLI 194 (724)
Q Consensus 120 wd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~l 194 (724)
||+.+++.. .+..|. .|.+++|+|+ +..+++|+.||+|++|+.. .+.....+ .+...+.+++|+ +.++
T Consensus 150 wd~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~s~s~d~~v~iwd~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 150 WDIENRKIVMILQGHEQDIYSLDYFPS-----GDKLVSGSGDRTVRIWDLR-TGQCSLTL-SIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETT-TTEEEEEE-ECSSCEEEEEECSTTCCEE
T ss_pred EECCCCcEEEEEccCCCCEEEEEEcCC-----CCEEEEecCCCcEEEEECC-CCeeEEEE-EcCCCcEEEEEECCCCCEE
Confidence 999987654 577888 9999999999 8999999999999999875 34333333 356679999998 5677
Q ss_pred EEE-cCCcEEEEEcCCCceEEEecCCCC-CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 195 AWA-NDAGVKVYDAANDQRITFIERPRG-SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 195 a~~-~d~~i~i~d~~~~~~~~~i~~~~~-~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++ .|+.|++||++++..+..+..... ...|...+.+++| +++..|++| .|+.|++||+++..
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 777 799999999999988776643321 2345567888999 688888888 89999999998654
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=7.9e-20 Score=197.67 Aligned_cols=188 Identities=17% Similarity=0.161 Sum_probs=152.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCC-eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~ 135 (724)
++++++++|++|+.+|.|++||.... ....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++ ...+..|. +
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 183 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence 46789999999999999999999544 455567999999999999999999999999999999999855 45678888 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc---CCCCeEEEEE---------------------e-
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---GEGPVHVVKW---------------------R- 190 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~---------------------~- 190 (724)
|.+++|+|+ ++.+++|+.||.|++|+.. .+.....+.. +...|.++.| +
T Consensus 184 v~~~~~~~~-----~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 184 VTDIAIIDR-----GRNVLSASLDGTIRLWECG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp EEEEEEETT-----TTEEEEEETTSCEEEEETT-TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred EEEEEEcCC-----CCEEEEEcCCCcEEEeECC-CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 999999999 8999999999999999875 4444444443 4456666666 3
Q ss_pred -CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCC-eEEEE-eCCeEEEEEEeeCC
Q 004914 191 -TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDT-LLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 -~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~-~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.+++++ .|+.|++||+++++.+..+... +...+.+++| +++. .+++| .|+.|++||++++.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-----FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCT-----TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccc-----cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 4577766 7999999999998877765432 2335778889 5666 78888 88999999998754
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.87 E-value=3.4e-21 Score=209.84 Aligned_cols=193 Identities=16% Similarity=0.147 Sum_probs=153.5
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecC-CCe--eEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCce
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFL-GNQ--VKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEK 127 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~-~~~--~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (724)
..|+| |+| ++++||+|+.||.|+|||+. +.. ...+.+|.+.|++++|+| ++++|+||+.||+|++||+.++..
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 34777 455 46799999999999999994 332 345678999999999998 688999999999999999988766
Q ss_pred EEEeCC---C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEE-cC
Q 004914 128 MKFDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWA-ND 199 (724)
Q Consensus 128 ~~~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~-~d 199 (724)
..+..+ . .+.+++|+|+ +.++++|+.||.|++|+.. +.....+..|.++|++++|+ + .+++++ .|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-----~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSAS-----SRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETT-----TTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred eEEeccCCCCccEEEEEECCC-----CCEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 554332 2 6889999999 8999999999999999874 56667778899999999998 3 467666 79
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.|++||+++++....+.. ...|...+.+++| +++..|++| .|+.|++|++.++.
T Consensus 273 ~~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLY---SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SBCCEEETTTCCSSSCCSB---CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ceeeEEecccccccceEEE---eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 9999999987654332211 1234456778889 688888888 89999999998754
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.87 E-value=3.8e-20 Score=195.70 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=153.1
Q ss_pred EEEec----CCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCceEE-E-
Q 004914 59 CVAVA----ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMK-F- 130 (724)
Q Consensus 59 ~~s~~----~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~~-~- 130 (724)
+|+++ ++++++|+.||.|++||. ++..+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++... +
T Consensus 76 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp EEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 47887 679999999999999999 5777888999999999999999 89999999999999999999876654 4
Q ss_pred --eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce----------------------------Eecc
Q 004914 131 --DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ----------------------------VLHS 179 (724)
Q Consensus 131 --~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~----------------------------~l~~ 179 (724)
..|. .|.+++|+|+ +..+++|+.||.+++|+.. .+.... ....
T Consensus 156 ~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLL-----GEKIMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp STTSCSSCEEEEEECTT-----SSEEEEEETTSCEEEEESC-SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred ccccccCceeEEEECCC-----CCEEEEecCCCCEEEEECC-CCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 4677 9999999999 8999999999999999864 221111 2223
Q ss_pred CCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCce--------------EEEecCCCCCCCCCCCCCceee-cC--CCeEE
Q 004914 180 GEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQR--------------ITFIERPRGSPRPELLLPHLVW-QD--DTLLV 241 (724)
Q Consensus 180 ~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~--------------~~~i~~~~~~~~~~~~~~~l~~-~~--~~~l~ 241 (724)
|.+.|.+++|++.+++++ .|+.|++||+.++.. +..+..+ ...+.+++| ++ +..|+
T Consensus 230 ~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 230 HRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS------QCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp CSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS------SCCSSCCCCEECTTSSEEE
T ss_pred CcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc------CCcEEEEEEcCCCCCcEEE
Confidence 889999999998888888 699999999987644 3343333 234667778 56 88999
Q ss_pred EE-eCCeEEEEEEeeCC
Q 004914 242 IG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 242 ~g-~d~~i~vw~~~~~~ 257 (724)
+| .|+.|++||+.++.
T Consensus 304 ~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EECTTSCEEEEECCSSS
T ss_pred EEecCCcEEEEECCCCC
Confidence 88 88999999998754
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=2.6e-20 Score=215.43 Aligned_cols=190 Identities=17% Similarity=0.223 Sum_probs=154.6
Q ss_pred CceEEEE--ec-CCEEEEEeCCCeEEEEecCC------CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC
Q 004914 55 DAASCVA--VA-ERMIALGTHAGTVHILDFLG------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 55 ~~i~~~s--~~-~~~la~g~~dg~I~i~d~~~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
+.|+|++ ++ +++|++|+.||+|++|++.. .....+.+|...|++++|+|+|++|+||+.||+|++||+.++
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~ 462 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 4466654 44 57999999999999999842 224678899999999999999999999999999999999987
Q ss_pred ce-EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe----ccCCCCeEEEEEeC----CEEE
Q 004914 126 EK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL----HSGEGPVHVVKWRT----SLIA 195 (724)
Q Consensus 126 ~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l----~~~~~~V~~l~~~~----~~la 195 (724)
.. ..+..|. .|.+++|+|+ ++.+++|+.||+|++|+.. +.....+ .+|...|.+++|++ ..++
T Consensus 463 ~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~s~D~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 463 VSTRRFVGHTKDVLSVAFSLD-----NRQIVSASRDRTIKLWNTL--GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTT-----SSCEEEEETTSCEEEECTT--SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred cceeEEeCCCCCEEEEEEeCC-----CCEEEEEeCCCEEEEEECC--CCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 65 4678888 9999999999 8999999999999999863 2222222 35788899999983 3555
Q ss_pred EE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 196 WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 196 ~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++ .|+.|++||+++++....+..+. ..+.+++| +++..|++| .|++|++||++++.
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~------~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHT------GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCC------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 55 79999999999998887765443 35778899 678888888 89999999987653
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.86 E-value=1.7e-20 Score=201.29 Aligned_cols=194 Identities=17% Similarity=0.212 Sum_probs=148.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeCCCCe
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYHRPM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v 136 (724)
+|+|+|++|++|+.||+|++||. ++..+..+.+|...|++++|+|+|++|++|+.||+|++||+.++.... +..+..+
T Consensus 130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v 209 (393)
T 1erj_A 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV 209 (393)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCc
Confidence 47889999999999999999999 455678889999999999999999999999999999999999877654 4444499
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-------ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-------HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-------~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
.+++|+|. +++++++|+.||.|++|+.. .+.....+ .+|.+.|.+++|+ |.+++++ .|+.|++||
T Consensus 210 ~~~~~~~~----~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 210 TTVAVSPG----DGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp EEEEECST----TCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEECC----CCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999993 27999999999999999875 34333333 4688899999998 6777777 699999999
Q ss_pred cCCCceEEEecCCC------CCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPR------GSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~------~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+++.........+. ....|...+.+++| +++..|++| .|+.|++||+.++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 98643321111000 01123445777888 677888888 89999999986643
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-20 Score=196.87 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=152.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC---CeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCCc---eEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG---NQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDE---KMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~---~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~---~~~~ 130 (724)
+|++++++|++|+.||.|++||+.+ ..+..+.+|.+.|++++|+++ +++|++|+.||.|++||+.++. ...+
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee
Confidence 5888999999999999999999942 335678899999999999987 9999999999999999999875 3456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeC---------------CE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRT---------------SL 193 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~---------------~~ 193 (724)
..|. +|.+++|+|+- .+..+++|+.||.|++|+..-.. .....+..|..+|.+++|++ .+
T Consensus 98 ~~~~~~v~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHE---YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp CCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred cCCCcceEEEEeCCCC---CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence 6677 99999999971 15799999999999999876322 23445667899999999984 56
Q ss_pred EEEE-cCCcEEEEEcCCCceE----EEecCCCCCCCCCCCCCceee-cC---CCeEEEE-eCCeEEEEEEeeCC
Q 004914 194 IAWA-NDAGVKVYDAANDQRI----TFIERPRGSPRPELLLPHLVW-QD---DTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~~~----~~i~~~~~~~~~~~~~~~l~~-~~---~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++++ .|+.|++||++++... ..+.. |...+.+++| ++ +..|++| .|+.|++|+++++.
T Consensus 175 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEG------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEECC------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred EEEEeCCCeEEEEEecCCCcceeeEEEEec------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6666 7999999999876533 23322 3345778999 55 6788888 89999999998754
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=3.9e-20 Score=213.99 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=157.3
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE----eCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF----DYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~----~~~ 133 (724)
++++++++|++|+.||+|++||+ ++..+..+.+|...|++++|+|++++|+||+.||+|++||..+.....+ ..|
T Consensus 437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 47789999999999999999999 5666788999999999999999999999999999999999876554443 346
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
. .|.+++|+|+- ....+++|+.||.|++|+.. .+.....+.+|.+.|++++|+ |.+++++ .|+.|++||+.+
T Consensus 517 ~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 517 RDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECSCS---SSCEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCcEEEEEEeCCC---CcceEEEEeCCCeEEEEECC-CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 6 89999999981 12589999999999999986 456667788899999999999 6777777 799999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
++.+..+..+ ..+.+++| +++..++++.++.|++||++++.
T Consensus 593 ~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 593 GKKLYSLEAN-------SVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp TEEEECCBCS-------SCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred CceEEEecCC-------CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence 9887765432 24667888 56777777789999999987654
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.86 E-value=4.4e-20 Score=197.16 Aligned_cols=190 Identities=22% Similarity=0.249 Sum_probs=153.9
Q ss_pred EEEec-CCEEEEEeCCCeEEEEec-CCCeeEEE-----cCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccC--CceE
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDF-LGNQVKEF-----PAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFT--DEKM 128 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~-~~~~~~~~-----~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~--~~~~ 128 (724)
++.|+ +..+++|+.||+|++||+ ++..+..+ .+|...|.+++|++ ++++|++|+.||+|++||++. ....
T Consensus 164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~ 243 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243 (380)
T ss_dssp BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 35564 557999999999999999 56666666 67999999999987 789999999999999999974 3345
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC-------CCCeEEEEEe--CCEEEEE-
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG-------EGPVHVVKWR--TSLIAWA- 197 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~-------~~~V~~l~~~--~~~la~~- 197 (724)
.+.+|. .|++++|+|+ +..|++|+.||+|++|+.+ .+.....+..+ ...|++++|+ |.+++++
T Consensus 244 ~~~~h~~~v~~v~~~p~-----~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 244 TYHGHEGDINSVKFFPD-----GQRFGTGSDDGTCRLFDMR-TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp EECCCSSCCCEEEECTT-----SSEEEEECSSSCEEEEETT-TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred EECCcCCCeEEEEEecC-----CCeEEEEcCCCeEEEEECC-CCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 678888 9999999999 8999999999999999986 44444444332 2348899998 7888888
Q ss_pred cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|+.|++||+.+++.+..+... ...|...+.+++| +++..|++| .|++|++|++...
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTL--QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCS--CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCEEEEECCCCceEEEEecc--cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 7999999999988887765322 1235556889999 788999999 8999999998653
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.86 E-value=1.6e-20 Score=212.28 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=159.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Cee
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMK 137 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~ 137 (724)
+++|++++|++|+.||.|++||.+++.+..+.+|...|++++|+|++++|++++.||.|++||........+..|. +|+
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE
Confidence 4778999999999999999999999888999999999999999999999999999999999998777677788888 999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEE
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRIT 214 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~ 214 (724)
+++|+|+ ++++++++.||.|++|+. .+.....+.+|.++|++++|+ |++++++ .|+.|++||. +++.+.
T Consensus 472 ~~~~spd-----~~~las~~~d~~i~iw~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~ 543 (577)
T 2ymu_A 472 GVAFSPD-----GQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 543 (577)
T ss_dssp EEEECTT-----SCEEEEEETTSEEEEEET--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE
T ss_pred EEEEcCC-----CCEEEEEeCCCEEEEEcC--CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEE
Confidence 9999999 899999999999999986 467778888999999999999 6777766 7999999996 567777
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
.+..+. ..+.+++| ++++.|++| .|++|++||
T Consensus 544 ~~~~h~------~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 544 TLTGHS------SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCS------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCC------CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 765543 34778899 688888888 899999996
No 38
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.86 E-value=2e-20 Score=194.37 Aligned_cols=188 Identities=15% Similarity=0.193 Sum_probs=147.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CC--eeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCc---eEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GN--QVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDE---KMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~--~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~---~~~~ 130 (724)
+|+++|++||+|+.||+|++||+. +. .+..+.+|.++|++++|++ +|++|+||+.||+|++||+.++. ...+
T Consensus 20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc
Confidence 477899999999999999999994 43 3567899999999999986 48999999999999999998863 3456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCCCeEEEEEeC----------------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGPVHVVKWRT---------------- 191 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~~V~~l~~~~---------------- 191 (724)
..|. +|++++|+|+- .+..+++|+.||.|++|+..-.+. ....+..|...|.+++|++
T Consensus 100 ~~h~~~V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp CCCSSCCCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred cCCCCceEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 7788 99999999971 257899999999999998752111 1344566888899999984
Q ss_pred ---CEEEEE-cCCcEEEEEcCCCc---eEEEecCCCCCCCCCCCCCceee-cCC----CeEEEE-eCCeEEEEEEee
Q 004914 192 ---SLIAWA-NDAGVKVYDAANDQ---RITFIERPRGSPRPELLLPHLVW-QDD----TLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 192 ---~~la~~-~d~~i~i~d~~~~~---~~~~i~~~~~~~~~~~~~~~l~~-~~~----~~l~~g-~d~~i~vw~~~~ 255 (724)
.+++++ .|+.|++||+..+. .+..+. .|...+.+++| +++ ..|++| .|++|++|++.+
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~------~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTTSCEEEEECCB------CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccceEEEecCCCeEEEEEeCCCCccceeeecc------cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 356666 69999999997552 333333 34456788999 443 678888 899999999876
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.86 E-value=5.5e-20 Score=194.58 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=143.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCee----EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQV----KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~----~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
+|+|+++ +++|+.+|+|++||+ +++.. ....+|.+.|++++|+|+|++|++|+.||.|++||+.+++.. .+..
T Consensus 101 ~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 101 AWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 4777765 457888999999998 34332 234579999999999999999999999999999999987754 5788
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE--eccCCCCeEEEEEe---CCEEEEE-cCCcEEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV--LHSGEGPVHVVKWR---TSLIAWA-NDAGVKVY 205 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~--l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~ 205 (724)
|. .|++++|+|+ +...+++++.||.|++|+.+ .+..... ...+...+.+++|+ +.+++++ .|+.|++|
T Consensus 180 h~~~v~~v~~s~~----~~~~~~s~~~dg~v~~wd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPG----KDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTT----CSSCEEEEETTSCEEECCTT-SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred CCCCEEEEEEccC----CCceeeeeccCCceEEEECC-CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 88 9999999998 24589999999999999875 3333332 34467889999998 4677776 69999999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceee-cCC-CeEEEE-eCCeEEEEEEeeC
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDD-TLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~-~~l~~g-~d~~i~vw~~~~~ 256 (724)
|+++++.+..+..+. ..+.+++| +++ .+|++| .|++|+|||++++
T Consensus 255 d~~~~~~~~~~~~~~------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS------QNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp ESSCGGGCEEECCCS------SCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ECCCCcEeEEEeccc------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 999998887765443 34678888 444 567777 8899999998654
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.86 E-value=1.6e-19 Score=191.55 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=153.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE---EEeC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~ 132 (724)
+|+++++++++|+.+|.|++||..+. .+..+.+|...|++++|+|++++|++++.||.|++||+.++... .+..
T Consensus 15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec
Confidence 68889999999999999999999554 67888999999999999999999999999999999999887633 3355
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc----ceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR----DQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~----~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i 204 (724)
+. .|.+++|+|+ ++.+++|+.||.+++|+.. .+.. ......|.+.|.+++|+ +.+++++ .|+.|++
T Consensus 95 ~~~~v~~~~~~~~-----~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 168 (372)
T 1k8k_C 95 INRAARCVRWAPN-----EKKFAVGSGSRVISICYFE-QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168 (372)
T ss_dssp CSSCEEEEEECTT-----SSEEEEEETTSSEEEEEEE-TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCceeEEEECCC-----CCEEEEEeCCCEEEEEEec-CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence 66 9999999999 8999999999999999876 2321 22335678999999998 5677776 6999999
Q ss_pred EEcC------------------CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 205 YDAA------------------NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~------------------~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
||++ .++.+..+.. +...+.+++| +++..+++| .|+.|++||++++.
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSS------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCC------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEcccccccccccccccccccchhhheEecCC------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9964 4566655443 3335778889 677788888 89999999998754
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.85 E-value=6.5e-20 Score=188.74 Aligned_cols=197 Identities=19% Similarity=0.227 Sum_probs=150.4
Q ss_pred CceEE--EEe--cCCEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC
Q 004914 55 DAASC--VAV--AERMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 55 ~~i~~--~s~--~~~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
+.|.+ |++ ++++|++|+.||+|++||.... .+..+.+|...|++++|+|+ |.+|++|+.||+|++||+.++
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 44555 444 3789999999999999999532 45677889999999999998 899999999999999999875
Q ss_pred c---eEEEeCCC-CeeEEEeCCCCCC--------CCCCEEEEecCCCeEEEEecccCCc----cceEeccCCCCeEEEEE
Q 004914 126 E---KMKFDYHR-PMKAISLDPDYTR--------KMSRRFVAGGLAGHLYLNSKKWLGY----RDQVLHSGEGPVHVVKW 189 (724)
Q Consensus 126 ~---~~~~~~~~-~v~~v~~~p~~~~--------~~~~~l~~g~~dg~v~l~~~~~~~~----~~~~l~~~~~~V~~l~~ 189 (724)
. ...+..|. .|.+++|+|+... ..++.|++|+.||.|++|+.+ .+. ....+.+|.++|.+++|
T Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~-~~~~~~~~~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN-SDAQTYVLESTLEGHSDWVRDVAW 212 (297)
T ss_dssp SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE-TTTTEEEEEEEECCCSSCEEEEEE
T ss_pred CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc-CCCceEEEEEEecCCCCceEEEEE
Confidence 3 34567788 9999999996210 014689999999999999875 232 34567789999999999
Q ss_pred eC-----CEEEEE-cCCcEEEEEcCCCc--eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 190 RT-----SLIAWA-NDAGVKVYDAANDQ--RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 190 ~~-----~~la~~-~d~~i~i~d~~~~~--~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
++ .+++++ .|++|++||+.++. ....... ...+...+.+++| +++..|++| .|+.|++|+...
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK---EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS---SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee---cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 94 567766 69999999998643 1111111 1123345778899 688888888 899999999864
No 42
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.85 E-value=3.5e-20 Score=210.92 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=156.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CC--eeEEEcCCccceeEEEEcCCCCEEEEEeCC----CCEEEEeccCCceEEEe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFTDEKMKFD 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~~~~~~~~ 131 (724)
+|+|+|++||+|+.||+|++||.. +. ....+.+|.++|.+++|+|+|++|++++.+ +.|++||.. .....+.
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~ 144 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLT 144 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCC
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcceec
Confidence 588899999999999999999983 33 346788999999999999999999998875 478888843 3344577
Q ss_pred CCC-CeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
+|. .|++++|+|+ +. .+++|+.|+++++|+.. .+.....+.+|.+.|.+++|+ |++++++ .|++|++||
T Consensus 145 gh~~~v~~v~f~p~-----~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 145 GQARAMNSVDFKPS-----RPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp CCSSCEEEEEECSS-----SSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCceEEEECCC-----CCeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 888 9999999998 54 69999999999999864 345566788899999999999 6788777 799999999
Q ss_pred cCCCceEEEecCC-CCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERP-RGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~-~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.+++.+..+... .....|...+.+++| +++..|++| .|++|++||+.++.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 9999888776321 112245667888999 688888888 89999999987643
No 43
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.85 E-value=1e-19 Score=190.32 Aligned_cols=190 Identities=13% Similarity=0.184 Sum_probs=149.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCC-----eeEEEcCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCc-----
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGN-----QVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDE----- 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~-----~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~----- 126 (724)
+|++++++|++|+.||.|++||+... ....+.+|...|++++|+| ++++|++|+.||.|++||+.++.
T Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence 47789999999999999999999532 3567789999999999999 69999999999999999998752
Q ss_pred -----eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-----------------------------
Q 004914 127 -----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG----------------------------- 171 (724)
Q Consensus 127 -----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~----------------------------- 171 (724)
...+..|. +|.+++|+|+. .+..+++|+.||.|++|+..-..
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 174 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE
T ss_pred cCcceeeeecccCCceeEEEEcCCC---CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE
Confidence 34566777 99999999971 15799999999999999853110
Q ss_pred ---------------------------c---cceEeccCCCCeEEEEEe--C----CEEEEE-cCCcEEEEEcCCCc---
Q 004914 172 ---------------------------Y---RDQVLHSGEGPVHVVKWR--T----SLIAWA-NDAGVKVYDAANDQ--- 211 (724)
Q Consensus 172 ---------------------------~---~~~~l~~~~~~V~~l~~~--~----~~la~~-~d~~i~i~d~~~~~--- 211 (724)
. ....+.+|.++|++++|+ + .+++++ .|+.|++||++++.
T Consensus 175 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 254 (351)
T 3f3f_A 175 WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254 (351)
T ss_dssp ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---
T ss_pred eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence 0 023344578899999999 3 467766 79999999998652
Q ss_pred -------------------------------------------eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC
Q 004914 212 -------------------------------------------RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT 246 (724)
Q Consensus 212 -------------------------------------------~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~ 246 (724)
.+..+. .|...+.++.| +++..|++| .|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~dg 328 (351)
T 3f3f_A 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD------DHNGEVWSVSWNLTGTILSSAGDDG 328 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEEC------TTSSCEEEEEECSSSCCEEEEETTS
T ss_pred ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe------cccccEEEEEEcCCCCEEEEecCCC
Confidence 222222 24445788999 678888888 899
Q ss_pred eEEEEEEeeCC
Q 004914 247 YIKIASIKTNQ 257 (724)
Q Consensus 247 ~i~vw~~~~~~ 257 (724)
.|++|++.+++
T Consensus 329 ~v~iw~~~~~~ 339 (351)
T 3f3f_A 329 KVRLWKATYSN 339 (351)
T ss_dssp CEEEEEECTTS
T ss_pred cEEEEecCcCc
Confidence 99999998754
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.85 E-value=5.7e-19 Score=184.26 Aligned_cols=184 Identities=12% Similarity=0.150 Sum_probs=153.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC-Ce---eEEEc--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc---eEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG-NQ---VKEFP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---KMK 129 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~-~~---~~~~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~~~ 129 (724)
+|+++++++++|+ +|.|++||... .. +..+. +|...|++++|+|++++|++++.||.|++||+.++. ...
T Consensus 58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 136 (337)
T 1gxr_A 58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence 6888999999999 99999999943 22 33333 789999999999999999999999999999999865 335
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEE
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVY 205 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~ 205 (724)
+..+. .|.+++|+|+ ++.+++|+.||.+++|+.. .+.....+..|.++|.+++|+ +.+++++ .|+.|++|
T Consensus 137 ~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 137 LTSSAPACYALAISPD-----SKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EECSSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCCceEEEEECCC-----CCEEEEEeCCCcEEEEeCC-CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 66677 8999999999 8999999999999999986 456666777899999999998 5677766 79999999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|+++++.+..+.... .+.++.| +++..+++| .++.|++|+++++
T Consensus 211 d~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 211 DLREGRQLQQHDFTS-------QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp ETTTTEEEEEEECSS-------CEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ECCCCceEeeecCCC-------ceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 999998887764332 3667888 678888888 7899999998764
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.85 E-value=7.9e-21 Score=202.43 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=148.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC---CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc----eEEEe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG---NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE----KMKFD 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~----~~~~~ 131 (724)
+|+|++++|++|+.||.|++||..+ ..+..+.+|...|++++|+|+|++|++|+.||.|++||+.++. ...+.
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence 7899999999999999999999954 4567788999999999999999999999999999999999865 45566
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc---cceEecc-CCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY---RDQVLHS-GEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~---~~~~l~~-~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
.|. +|++++|+|+ ++.+++|+.||.|++|+.. .+. ....+.. |.+.|.+++|+ +.+++++ .|+.|+
T Consensus 98 ~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 98 RLNRAATFVRWSPN-----EDKFAVGSGARVISVCYFE-QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp CCSSCEEEEECCTT-----SSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred ccCCceEEEEECCC-----CCEEEEEecCCeEEEEEEC-CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 777 9999999999 8999999999999999875 232 3556666 89999999999 5677776 799999
Q ss_pred EEEcCCC------------------ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 204 VYDAAND------------------QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 204 i~d~~~~------------------~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+||+.++ +.+..+ .+...+.+++| +++..|++| .|+.|++||+.++..
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 9999633 222222 34456788899 678888888 899999999988654
No 46
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.85 E-value=2.4e-19 Score=195.45 Aligned_cols=195 Identities=11% Similarity=0.169 Sum_probs=151.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC-C-----------eeEEEcCCc------------cceeEEEEcCCC--C
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG-N-----------QVKEFPAHT------------AAVNDLSFDVDG--E 106 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~-~-----------~~~~~~~h~------------~~V~~l~~s~~g--~ 106 (724)
+.|+| |+++|++||+|+.||.|++|+... . ....+.+|. +.|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 45555 778999999999999999999943 3 267788998 889999999998 7
Q ss_pred EEEEEeCCCCEEEEeccCCceE----------------------------------------E-EeCCC-CeeEEEeCCC
Q 004914 107 YVGSCSDDGSVVINSLFTDEKM----------------------------------------K-FDYHR-PMKAISLDPD 144 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~~----------------------------------------~-~~~~~-~v~~v~~~p~ 144 (724)
.+++++.||+|++||+.++... . ...|. +|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 9999999999999998763321 1 24577 9999999999
Q ss_pred CCCCCCCEEEEecCCCeEEEEecccCCccce-------EeccCCCCeEEEEEe--C-CEEEEE-cCCcEEEEEcCCCce-
Q 004914 145 YTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ-------VLHSGEGPVHVVKWR--T-SLIAWA-NDAGVKVYDAANDQR- 212 (724)
Q Consensus 145 ~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~-------~l~~~~~~V~~l~~~--~-~~la~~-~d~~i~i~d~~~~~~- 212 (724)
++.+++| .||.|++|+..-.+.... .+..|.+.|++++|+ + .+++++ .|+.|++||+++++.
T Consensus 189 -----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 189 -----YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp -----SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred -----CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 8999999 799999998752222222 245788999999999 4 677777 799999999998876
Q ss_pred ---EEEecCCCCCC------CCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 213 ---ITFIERPRGSP------RPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 213 ---~~~i~~~~~~~------~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+..+..+.... .+...+.+++| +++..|++|.++.|++||++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~ 315 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM 315 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC
Confidence 55555443210 01124678889 688889988559999999986
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.85 E-value=3.3e-19 Score=195.72 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=159.2
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
++|++++++++++|+.||+|++||. ++..+..+.+|.+.|++++|+|++ .+++|+.||+|++||+.++... .+..|.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~ 203 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 203 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCC
Confidence 5789999999999999999999998 667778899999999999999988 9999999999999999987654 567787
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc----------------------cceEeccCCCCeEEEEEeC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY----------------------RDQVLHSGEGPVHVVKWRT 191 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~----------------------~~~~l~~~~~~V~~l~~~~ 191 (724)
+|.+++|+|. .++..+++|+.||.+++|+..-... ....+.+|...|.++..++
T Consensus 204 ~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 280 (464)
T 3v7d_B 204 STVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 280 (464)
T ss_dssp SCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET
T ss_pred CccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC
Confidence 9999999853 0168999999999999998652211 1335667888999998888
Q ss_pred CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 192 SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+++++ .|+.|++||+.+++.+..+..+. ..+.++.| +++..+++| .|+.|++||++++.
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHT------DRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCS------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCC------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 887777 79999999999999888765443 34778888 677888888 88999999987654
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.84 E-value=2e-18 Score=185.68 Aligned_cols=188 Identities=15% Similarity=0.190 Sum_probs=154.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYH 133 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~ 133 (724)
+.+++++++.+++++.+|.|++||. ++.....+.. |...|++++|+|+|++|++|+.||.|++||+.++.. ..+..|
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 175 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH 175 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC
Confidence 4457777788889999999999999 5555555554 889999999999999999999999999999998665 457777
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
. .|.+++|+ +..+++|+.||.|.+|+....+.....+..|.+.|.+++|+ +.+++++ .|+.|++||+++
T Consensus 176 ~~~v~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 176 QARVGCLSWN-------RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp SSCEEEEEEE-------TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCceEEEEEC-------CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 7 99999994 46999999999999999875556677788899999999998 6777776 799999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-c-CCCeEEEEe---CCeEEEEEEeeCC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-Q-DDTLLVIGW---GTYIKIASIKTNQ 257 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g~---d~~i~vw~~~~~~ 257 (724)
++.+..+..+. ..+.+++| + +...+++|. |+.|++||++++.
T Consensus 249 ~~~~~~~~~~~------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 249 SIPKFTKTNHN------AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSEEEEECCCS------SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCccEEecCCc------ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 88887765443 34778899 4 345666654 8999999987643
No 49
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.84 E-value=7.7e-20 Score=194.07 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=146.2
Q ss_pred eEEEEecCCEEEEE--eCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EE--E
Q 004914 57 ASCVAVAERMIALG--THAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MK--F 130 (724)
Q Consensus 57 i~~~s~~~~~la~g--~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~--~ 130 (724)
+.+|+|+|++++++ +.||+|++||. ++..+..+ .|.+.|.+++|+|+|+++++++.| .+++|+..++.. .. .
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD 215 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec
Confidence 56899999987655 46899999999 45555555 477889999999999999999865 455666555443 32 3
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCC----eEEEEecccCC---ccceEeccCCCCeEEEEEe--CCEEEEE-cC
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAG----HLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR--TSLIAWA-ND 199 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg----~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~--~~~la~~-~d 199 (724)
..|. .|.+++|+|+ +..+++++.++ .+..|+..... .....+.+|..+|++++|+ |++||++ .|
T Consensus 216 ~~~~~~v~~v~fspd-----g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 216 FDKNWSLSKINFIAD-----DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp CCTTEEEEEEEEEET-----TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCEEEEEEcCC-----CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 4566 8999999999 89999998877 46666653211 1234566788999999999 7888887 69
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++|+|||+.+++++..+.. .|...+.+++| +++..|++| .|++|+||++..+
T Consensus 291 ~~V~iwd~~~~~~~~~~~~-----gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQ-----AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEETTTTEEEEEETT-----SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCcEEEEecC-----cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999998877532 24456889999 789999999 9999999999654
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-19 Score=194.68 Aligned_cols=187 Identities=13% Similarity=0.156 Sum_probs=146.9
Q ss_pred EEEecCC-EEEEEeCCCeEEEEec----CCCe-------eEEEcC----------CccceeEEEEcCCCCEEEEEeCCCC
Q 004914 59 CVAVAER-MIALGTHAGTVHILDF----LGNQ-------VKEFPA----------HTAAVNDLSFDVDGEYVGSCSDDGS 116 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~----~~~~-------~~~~~~----------h~~~V~~l~~s~~g~~l~s~~~Dg~ 116 (724)
+|+|+++ ++|+|+.||.|++|++ .... ...+.. |.+.|++++|+|+|++|++|+.||.
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 131 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE 131 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSC
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 5888899 9999999999999999 5433 333333 6789999999999999999999999
Q ss_pred EEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC------------
Q 004914 117 VVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP------------ 183 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~------------ 183 (724)
|++||........+..|. +|.+++|+|+ ++.+++++.||.+++|+.. .+.....+..+...
T Consensus 132 i~i~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (425)
T 1r5m_A 132 LRLWNKTGALLNVLNFHRAPIVSVKWNKD-----GTHIISMDVENVTILWNVI-SGTVMQHFELKETGGSSINAENHSGD 205 (425)
T ss_dssp EEEEETTSCEEEEECCCCSCEEEEEECTT-----SSEEEEEETTCCEEEEETT-TTEEEEEECCC---------------
T ss_pred EEEEeCCCCeeeeccCCCccEEEEEECCC-----CCEEEEEecCCeEEEEECC-CCcEEEEeeccccCccceeeccccCC
Confidence 999996556666788888 9999999999 8999999999999999875 45555555555555
Q ss_pred ---eEEEEEe-CCEEE-EEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 184 ---VHVVKWR-TSLIA-WANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 184 ---V~~l~~~-~~~la-~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+.++.|+ +..++ ++.++.|++||+.+++.+..+..+. ..+.++.| +++..+++| .++.|++|+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 206 GSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH------GPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS------SCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC------CceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 8889998 44444 4489999999999988777665433 34678888 677788888 7999999998765
Q ss_pred C
Q 004914 257 Q 257 (724)
Q Consensus 257 ~ 257 (724)
.
T Consensus 280 ~ 280 (425)
T 1r5m_A 280 N 280 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 51
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=7.8e-19 Score=191.12 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=157.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
..++|++++++.+++|+.||.|++||. ++.....+.+|.+.|++++| +++++++|+.||.|++||+.+++.. .+..
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 458999999999999999999999999 67778889999999999998 6889999999999999999987654 5777
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc---eEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEc
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD---QVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~---~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~ 207 (724)
|. .|.+++|++ ..+++|+.||.|++|+.. .+... ..+.+|.++|.++.|++.+++++ .|+.|++||+
T Consensus 212 h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 212 HCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMA-SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp CCSCEEEEECCT-------TEEEEEETTSCEEEEECS-SSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred CCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCC-CCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 77 999999964 489999999999999875 33333 56678999999999998888777 7999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++++.+..+..+.. .+.++.|. +..+++| .|+.|++||++++.
T Consensus 284 ~~~~~~~~~~~~~~------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 284 STCEFVRTLNGHKR------GIACLQYR-DRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp TTCCEEEEEECCSS------CEEEEEEE-TTEEEEEETTSCEEEEETTTCC
T ss_pred CcCcEEEEEcCCCC------cEEEEEeC-CCEEEEEeCCCeEEEEECCCCC
Confidence 99999888765432 35667774 5667777 89999999997643
No 52
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.84 E-value=4.2e-19 Score=200.52 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=158.8
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Cee
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMK 137 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~ 137 (724)
+++|+++.+++|+.+|.|++|+.++..+..+.+|...|++++|+|+|++|++++.||.|++||........+..|. +|+
T Consensus 351 ~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~ 430 (577)
T 2ymu_A 351 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE
Confidence 4778999999999999999999999888999999999999999999999999999999999997666667788888 999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEE
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRIT 214 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~ 214 (724)
+++|+|+ ++.+++++.||.+++|+. .+.....+.+|.++|++++|+ +++++++ .|+.|++||. +++.+.
T Consensus 431 ~~~~s~d-----~~~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 431 GVAFSPD-----DQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp EEEECTT-----SSEEEEEETTSEEEEEET--TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred EEEECCC-----CCEEEEEcCCCEEEEEEC--CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 9999999 899999999999999986 366677788899999999999 6788877 7999999995 567777
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
.+..+. ..+.+++| +++++|++| .|+.|++||.
T Consensus 503 ~~~~h~------~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 503 TLTGHS------SSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEECCS------SCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEeCCC------CCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 765543 34778889 688888888 8899999984
No 53
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.84 E-value=1.9e-19 Score=195.68 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=151.6
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecC-----------CCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCC
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFL-----------GNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~-----------~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~ 125 (724)
+++|+ ++++|+|+.+|.|++|++. ...+..+.+|...|++++|+|++. +|++|+.||.|++|++.++
T Consensus 135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 57775 6799999999999999994 345678889999999999999998 9999999999999999873
Q ss_pred c--------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEEEEEe--C-
Q 004914 126 E--------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR--T- 191 (724)
Q Consensus 126 ~--------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~l~~~--~- 191 (724)
. ...+..|. .|.+++|+|. ++..|++|+.||.|++|+.+-.. .....+..|.++|++++|+ +
T Consensus 215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 290 (430)
T 2xyi_A 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLL----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290 (430)
T ss_dssp CBGGGEEECSEEECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred CCCCceeccceeecCCCCCEeeeEEeCC----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence 2 23456677 9999999995 37899999999999999987332 4556667889999999999 3
Q ss_pred CEEEEE-cCCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee-cCC-CeEEEE-eCCeEEEEEEeeC
Q 004914 192 SLIAWA-NDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW-QDD-TLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~-~~~-~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+++++ .|+.|++||+++ +..+..+..+. ..+.++.| +++ .++++| .|+.|++||+...
T Consensus 291 ~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 291 FILATGSADKTVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp TEEEEEETTSEEEEEETTCTTSCSEEEECCS------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CEEEEEeCCCeEEEEeCCCCCCCeEEeecCC------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 366666 799999999997 45555555433 34778899 445 457777 8999999999874
No 54
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.84 E-value=1e-18 Score=198.85 Aligned_cols=188 Identities=15% Similarity=0.184 Sum_probs=151.3
Q ss_pred EEEecCC-EEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEe----
Q 004914 59 CVAVAER-MIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD---- 131 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~---- 131 (724)
+|+|++. .|++|+.||+|++||. .++....+.+|.+.|++++|+|+|++|+||+.||+|++||+.++... .+.
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 4777776 6999999999999998 45557888999999999999999999999999999999999887654 342
Q ss_pred ---CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc-----------------------------------
Q 004914 132 ---YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY----------------------------------- 172 (724)
Q Consensus 132 ---~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~----------------------------------- 172 (724)
.|. .|.+++|+|+ ++.+++|+.||+|++|+.. .+.
T Consensus 234 ~~~~h~~~V~~v~~spd-----g~~l~s~s~D~~v~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPD-----GTKIASASADKTIKIWNVA-TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTT-----SSEEEEEETTSEEEEEETT-TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCC-----CCEEEEEeCCCeEEEEeCC-CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 577 9999999999 8999999999999999864 121
Q ss_pred --------cceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEE
Q 004914 173 --------RDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLV 241 (724)
Q Consensus 173 --------~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~ 241 (724)
....+.+|.++|++++|+ |++++++ .|+.|++||+.++.....+. ..|...+.++.|.++..++
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-----DVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-----CSCSSCEEEEEECTTSCEE
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc-----cCCcceEEEEEECCCCcEE
Confidence 112345788999999999 6777777 79999999999987765431 2234457778885445555
Q ss_pred EE-eCCeEEEEEEeeCC
Q 004914 242 IG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 242 ~g-~d~~i~vw~~~~~~ 257 (724)
++ +|+.+++|++..+.
T Consensus 383 s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEETTTEEEEECSSSSS
T ss_pred EEEcCCceEEeecCCcc
Confidence 55 99999999986543
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.84 E-value=3.4e-19 Score=210.05 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=159.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-C
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (724)
+|+|+++++++|+.+|.|++||. ++..+..+.+|.++|++++|+|+|++|++|+.||.|++||+.++.. ..+..|. .
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC
Confidence 68899999999999999999998 6667788999999999999999999999999999999999998765 4677788 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC---CEEEEE-cCCcEEEEEcCCCc
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~---~~la~~-~d~~i~i~d~~~~~ 211 (724)
|++++|+|+ +..+++|+.||.|++|+..-.......+..|.++|.+++|++ ..++++ .|+.|++||+.++.
T Consensus 100 v~~~~~s~~-----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 100 IRSIAVHPT-----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (814)
T ss_dssp EEEEEECSS-----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred EEEEEEeCC-----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999999999 889999999999999987632355667778999999999984 566666 79999999998877
Q ss_pred eEEEecCCCCCCCCCCCCCceee-c--CCCeEEEE-eCCeEEEEEEeeC
Q 004914 212 RITFIERPRGSPRPELLLPHLVW-Q--DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~--~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
....+..+.. ..+..++| + ++..+++| .++.|++||+.++
T Consensus 175 ~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 175 PNFTLTTGQE-----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp CSEEEECCCT-----TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred ceeEEecCCC-----CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 7666544321 23567788 3 78888888 8999999998654
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.84 E-value=9.9e-19 Score=188.12 Aligned_cols=187 Identities=17% Similarity=0.289 Sum_probs=157.8
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-C-ceEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-D-EKMK 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~-~~~~ 129 (724)
..|++ |++++++|++|+.+|.|++||. ++..+..+.+|...|.+++|+ ++.+++|+.||.|++||+.. + ....
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeE
Confidence 44555 7778999999999999999999 567788899999999999994 67999999999999999985 3 3456
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEEc---CCcE
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWAN---DAGV 202 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~~---d~~i 202 (724)
+..|. .|.+++|+|+ +..+++|+.||.|++|+.. .+.....+..|.++|.+++|+ +.++++++ |+.|
T Consensus 213 ~~~~~~~v~~~~~~~~-----~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSD-----GLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp EECCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred EcCCCCCeeEEEEcCC-----CCEEEEEeCCCeEEEccCC-CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 77788 9999999999 8999999999999999986 456666777899999999999 36777664 9999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE--E-eCCeEEEEEEeeC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI--G-WGTYIKIASIKTN 256 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~--g-~d~~i~vw~~~~~ 256 (724)
++||+.+++.+..+..+. .+.++.| +++..+++ | .++.|++|++.++
T Consensus 287 ~i~d~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 287 HFWNAATGARVNTVDAGS-------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EEEETTTCCEEEEEECSS-------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCC-------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 999999999888775432 4678889 67788877 4 6899999999764
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.6e-19 Score=190.09 Aligned_cols=190 Identities=12% Similarity=0.213 Sum_probs=159.4
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-----
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM----- 128 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~----- 128 (724)
.+++ |++++++|++|+.+|.|++||.++..+..+.+|...|++++|+|++++|++++.||.|++||+.++...
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 5655 777899999999999999999888888999999999999999999999999999999999998764321
Q ss_pred ----------------------------------------------------EEeCCC-CeeEEEeCCCCCCCCCCEEEE
Q 004914 129 ----------------------------------------------------KFDYHR-PMKAISLDPDYTRKMSRRFVA 155 (724)
Q Consensus 129 ----------------------------------------------------~~~~~~-~v~~v~~~p~~~~~~~~~l~~ 155 (724)
.+..|. +|.+++|+|+ ++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~ 264 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-----NKLLLS 264 (425)
T ss_dssp C---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-----TTEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-----CCEEEE
Confidence 123455 8999999999 789999
Q ss_pred ecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC-CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCcee
Q 004914 156 GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLV 233 (724)
Q Consensus 156 g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~ 233 (724)
|+.||.+++|+.. .+.....+..|.++|.++.|++ .+++++ .|+.|++||+.+++.+..+..+. ..+.++.
T Consensus 265 ~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~ 337 (425)
T 1r5m_A 265 ASDDGTLRIWHGG-NGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG------VPIFAGR 337 (425)
T ss_dssp EETTSCEEEECSS-SBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT------CCEEEEE
T ss_pred EcCCCEEEEEECC-CCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC------ccEEEEE
Confidence 9999999999875 4566777778999999999993 255555 79999999999999888766543 2466788
Q ss_pred e-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 234 W-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 234 ~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
| +++..+++| .++.|++|++.++.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8 678888888 78999999998754
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.84 E-value=2.6e-19 Score=193.57 Aligned_cols=193 Identities=9% Similarity=0.082 Sum_probs=156.0
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE-eCCC-
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-DYHR- 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~~~~- 134 (724)
.+|+|+++++++|+.||.|++||..... ...+..| ..+....|+++|++|++|+.||.|++||+.++..... ..|.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence 4799999999999999999999995433 3344445 4455557899999999999999999999998777654 6777
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
+|++++|+|+ ++.+++|+.||.|++|+.. .+.....+.+|.++|.+++|+ +.+++++ .|+.|++||+++++
T Consensus 141 ~v~~~~~~~~-----~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 141 EITKLKFFPS-----GEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp CEEEEEECTT-----SSEEEEEETTSEEEEEETT-TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccEEEEECCC-----CCEEEEEeCCCeEEEEeCC-CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 9999999999 8999999999999999986 566777888899999999999 5677766 79999999999999
Q ss_pred eEEEecCCCCCCC------------------CCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 212 RITFIERPRGSPR------------------PELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 212 ~~~~i~~~~~~~~------------------~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+..+..+..... +...+.++.| +++..+++| .++.|++||++++.
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 8887764321110 1234556777 677888888 89999999987644
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.83 E-value=7.1e-19 Score=191.43 Aligned_cols=187 Identities=18% Similarity=0.318 Sum_probs=159.9
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce----EE
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK----MK 129 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~----~~ 129 (724)
+.|+|++++++.+++|+.||+|++||. ++..+..+.+|...|.+++|+ +..+++|+.||.|++||+.++.. ..
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEE
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeE
Confidence 568899999999999999999999999 677788899999999999997 46999999999999999988543 34
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEc
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~ 207 (724)
+..|. +|.+++| + ++.+++|+.||.|++|+.. .+.....+..|.+.|.++.|++.+++++ .|+.|++||+
T Consensus 252 ~~~~~~~v~~~~~--~-----~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 252 LVGHRAAVNVVDF--D-----DKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp ECCCSSCEEEEEE--E-----TTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ecCCCCcEEEEEe--C-----CCEEEEEeCCCeEEEEECC-cCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 56777 9999999 4 5799999999999999986 5666777888999999999998887777 7999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
++++.+..+..+. ..+.++.| ++..+++| .||.|++||+.++..
T Consensus 324 ~~~~~~~~~~~h~------~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~ 368 (435)
T 1p22_A 324 ECGACLRVLEGHE------ELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALD 368 (435)
T ss_dssp TTCCEEEEECCCS------SCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred CCCCEEEEEeCCc------CcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCC
Confidence 9999888876543 34667888 67778877 899999999987653
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.83 E-value=5e-19 Score=187.04 Aligned_cols=197 Identities=9% Similarity=0.101 Sum_probs=151.4
Q ss_pred CceEE--EEec----CCEEEEEeCCCeEEEEecC-CCeeEEEcC-----CccceeEEEEcCC----CCEEEEEeCCCCEE
Q 004914 55 DAASC--VAVA----ERMIALGTHAGTVHILDFL-GNQVKEFPA-----HTAAVNDLSFDVD----GEYVGSCSDDGSVV 118 (724)
Q Consensus 55 ~~i~~--~s~~----~~~la~g~~dg~I~i~d~~-~~~~~~~~~-----h~~~V~~l~~s~~----g~~l~s~~~Dg~v~ 118 (724)
+.|.+ |+|+ ...+++++.+|.|++||.. +..+..+.. |...|++++|+|+ |++|++|+.||.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 34555 5552 4567777788899999995 555545443 5678999999999 67999999999999
Q ss_pred EEeccCCce-EEEeCCC-CeeEEEeCC-CCCCCCCCEEEEecCCCeEEEEecccCCccceEe---ccCCCCeEEEEEe--
Q 004914 119 INSLFTDEK-MKFDYHR-PMKAISLDP-DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL---HSGEGPVHVVKWR-- 190 (724)
Q Consensus 119 iwd~~~~~~-~~~~~~~-~v~~v~~~p-~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~-- 190 (724)
+||+.+++. ..+..|. +|.+++|+| + +..+++|+.||.|++|+.. .+.....+ ..|.+.|.+++|+
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKFHPRD-----PNLLLSVSKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEECSSC-----TTEEEEEETTSCEEEEETT-TTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred EEEchhceEeeeecCCCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEEee-cCeEEEEecccccccCceeEEEECCC
Confidence 999998665 4577788 999999999 6 7999999999999999986 45555555 5789999999999
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCC----------------------CCCCCCCCCCCceeecCCCeEEEE-eCC
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERP----------------------RGSPRPELLLPHLVWQDDTLLVIG-WGT 246 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~----------------------~~~~~~~~~~~~l~~~~~~~l~~g-~d~ 246 (724)
+.+++++ .|+.|++||+++++....+... .....+...+.++.|. +..+++| .++
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~ 251 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCEN 251 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCC
Confidence 6677766 7999999999987654322210 0011145567788887 6678888 899
Q ss_pred eEEEEEEeeCCC
Q 004914 247 YIKIASIKTNQS 258 (724)
Q Consensus 247 ~i~vw~~~~~~~ 258 (724)
.|++||+++...
T Consensus 252 ~i~~wd~~~~~~ 263 (366)
T 3k26_A 252 AIVCWKPGKMED 263 (366)
T ss_dssp EEEEEEESSTTC
T ss_pred EEEEEeCCCccc
Confidence 999999987654
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=2.4e-19 Score=191.50 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=155.7
Q ss_pred CceEE--EEecC-CEEEEEeCCCeEEEEecC-CCeeEEEc--CCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCce
Q 004914 55 DAASC--VAVAE-RMIALGTHAGTVHILDFL-GNQVKEFP--AHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEK 127 (724)
Q Consensus 55 ~~i~~--~s~~~-~~la~g~~dg~I~i~d~~-~~~~~~~~--~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (724)
+.|.| |++++ +++++|+.||.|++||.. +.....+. +|.+.|++++|+| ++++|++++.||.|++||+.++..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 33444 77787 899999999999999994 44444444 6999999999999 789999999999999999998666
Q ss_pred EEEeCC---C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEE-cC
Q 004914 128 MKFDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWA-ND 199 (724)
Q Consensus 128 ~~~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~-~d 199 (724)
..+..+ . .|.+++|+|+ +..+++|+.||.|++|+.. +.....+..|.+.|.+++|+ +. +++++ .|
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVS-----RQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETT-----TTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred EEEeccCCCCCCeEEEEECCC-----CCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 555433 3 7999999999 8999999999999999973 66777788899999999999 44 67666 79
Q ss_pred CcEEEEEcCC----CceEEEecCCCCCCCCCCCCCceee-c-CCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 200 AGVKVYDAAN----DQRITFIERPRGSPRPELLLPHLVW-Q-DDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 200 ~~i~i~d~~~----~~~~~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+.|++||+++ +..+..+. +...+.++.| + ++..|++| .|+.|++||++++..
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CEEEEEeCCCCCcccceEEEec-------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 9999999997 55665543 2235778999 5 78888888 889999999987654
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=2.6e-19 Score=191.15 Aligned_cols=186 Identities=19% Similarity=0.263 Sum_probs=147.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccC----CceEEEeCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFT----DEKMKFDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~----~~~~~~~~~ 133 (724)
+|+++++++++|+.||.|++||+++..+..+.+|...|.+++|+|+++ ++++|+.||.|++||+.+ +.......|
T Consensus 170 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (383)
T 3ei3_B 170 DVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH 249 (383)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC
Confidence 478899999999999999999998888899999999999999999999 999999999999999997 445444456
Q ss_pred C-CeeEEEeCC-CCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC-------CCCeE----------EEEEe--CC
Q 004914 134 R-PMKAISLDP-DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG-------EGPVH----------VVKWR--TS 192 (724)
Q Consensus 134 ~-~v~~v~~~p-~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~-------~~~V~----------~l~~~--~~ 192 (724)
. +|++++|+| + +..+++++.||.|++|+.. .+.....+..+ ..++. .++|+ +.
T Consensus 250 ~~~v~~~~~s~~~-----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 250 EKPVNAAYFNPTD-----STKLLTTDQRNEIRVYSSY-DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp SSCEEEEEECTTT-----SCEEEEEESSSEEEEEETT-BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred CCceEEEEEcCCC-----CCEEEEEcCCCcEEEEECC-CCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 6 999999999 8 8999999999999999875 33333333322 23333 33333 33
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 193 LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 193 ~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+ +++.|+.|++||+.+++.+..+..+. +...+..++| +++..|++|.|+.|++|++.+
T Consensus 324 ~-s~s~d~~i~iwd~~~~~~~~~l~~~~----~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 324 L-LLNDKRTIDIYDANSGGLVHQLRDPN----AAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp T-CTTCCCCEEEEETTTCCEEEEECBTT----BCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred c-ccCCCCeEEEEecCCCceeeeecCCC----CCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 3 22368999999999999988876432 2234566688 688899999999999999864
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.83 E-value=1.1e-18 Score=190.37 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=157.8
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
++|++++|+++++|+.||+|++||. ++..+..+.+|.+.|++++|+ ++.+++|+.||+|++||+.+++.. .+..|.
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~ 199 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHT 199 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCC
Confidence 6789999999999999999999999 677788999999999999998 679999999999999999987654 577787
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCce
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
+|.+++|++ ..+++|+.||.+++|+.. .+.....+..|.++|.++.|++.+++++ .|+.|++||+++++.
T Consensus 200 ~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 200 STVRCMHLHE-------KRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp SCEEEEEEET-------TEEEEEETTSEEEEEESS-SCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CcEEEEEecC-------CEEEEEeCCCEEEEEECC-CCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcE
Confidence 999999964 479999999999999986 5666777888999999999997777666 799999999999998
Q ss_pred EEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+..+..+. ..+.++.| ++..+++| .|+.|++||++++.
T Consensus 272 ~~~~~~~~------~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 272 LHTLQGHT------NRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEEECCCS------SCEEEEEE-CSSEEEEEETTSCEEEEETTTCC
T ss_pred eEEecCCC------CceEEEEE-CCCEEEEEeCCCeEEEEECCCCC
Confidence 88775443 34667777 66777777 89999999997654
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.83 E-value=7e-19 Score=183.58 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=153.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-Ce
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v 136 (724)
+|+++++.+++|+.+|.|++||. ++..+..+..|...|.+++|+|+++++++++.||.|++||+.++.......+. ++
T Consensus 148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v 227 (337)
T 1gxr_A 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCce
Confidence 46778999999999999999999 55667888899999999999999999999999999999999987765433344 99
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRI 213 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~ 213 (724)
.+++|+|+ ++.+++|+.+|.+++|+.. ......+..|.++|.+++|+ +++++++ .|+.|++|++.+++.+
T Consensus 228 ~~~~~s~~-----~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 228 FSLGYCPT-----GEWLAVGMESSNVEVLHVN--KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEECTT-----SSEEEEEETTSCEEEEETT--SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCC-----CCEEEEEcCCCcEEEEECC--CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999 8999999999999999875 33345667789999999999 6777766 7999999999998887
Q ss_pred EEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEe
Q 004914 214 TFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
...... ..+.++.| +++..+++| .|+.|++|++.
T Consensus 301 ~~~~~~-------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 301 FQSKES-------SSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEECS-------SCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEecCC-------CcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 554322 24667888 677888888 89999999974
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.83 E-value=1.2e-18 Score=186.81 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=156.4
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecC-CC------eeEEEcCCccceeEEEEcCC----C---CEEEEEeCCCCEEEE
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFL-GN------QVKEFPAHTAAVNDLSFDVD----G---EYVGSCSDDGSVVIN 120 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~-~~------~~~~~~~h~~~V~~l~~s~~----g---~~l~s~~~Dg~v~iw 120 (724)
+.|++++.++++|++|+.||.|++|+.. +. .+..+.+|..+|++++|+|+ | ++|++++.||.|++|
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw 96 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 96 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence 5577877777999999999999999994 44 47788899999999999999 9 999999999999999
Q ss_pred eccCCc------eEEEeCC-----C-CeeEEEeC----CCCCCCCCCE-EEEecCCCeEEEEecccC-----Cccce---
Q 004914 121 SLFTDE------KMKFDYH-----R-PMKAISLD----PDYTRKMSRR-FVAGGLAGHLYLNSKKWL-----GYRDQ--- 175 (724)
Q Consensus 121 d~~~~~------~~~~~~~-----~-~v~~v~~~----p~~~~~~~~~-l~~g~~dg~v~l~~~~~~-----~~~~~--- 175 (724)
|+.++. ...+..+ . .|.+++|+ |+ +.. +++|+.||.|++|+..-. +....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 97 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL-----LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred EccCCcccccccceeecccccccCCCcEEEEEEeeccCCC-----CceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999866 5667777 4 99999999 88 788 999999999999987630 33333
Q ss_pred --Ee-------ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE
Q 004914 176 --VL-------HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI 242 (724)
Q Consensus 176 --~l-------~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~ 242 (724)
.+ ..|...|.+++|+ + +++++ .|+.|++||+++++.+..+............+.+++| +++..|++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 45 4478899999999 6 77777 6899999999999888877651000000234778889 67888888
Q ss_pred E-eC---CeEEEEEEeeCC
Q 004914 243 G-WG---TYIKIASIKTNQ 257 (724)
Q Consensus 243 g-~d---~~i~vw~~~~~~ 257 (724)
| .+ +.|++||++++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EecCCCCceEEEEECCCCc
Confidence 8 77 899999987643
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.83 E-value=4.7e-19 Score=187.93 Aligned_cols=186 Identities=16% Similarity=0.122 Sum_probs=154.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe-e--EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc----eEEE-
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ-V--KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE----KMKF- 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~-~--~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~----~~~~- 130 (724)
+|+++++++++|+.||.|++||..... . ..+..|...|++++|+|++++|++|+.||.|++||+.++. ...+
T Consensus 59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 478889999999999999999994433 2 3346799999999999999999999999999999999865 2233
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc-----------------cCCccceEeccCCCCeEEEEEe--
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-----------------WLGYRDQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-----------------~~~~~~~~l~~~~~~V~~l~~~-- 190 (724)
..|. .|.+++|+|+ ++.+++|+.||.+++|+.. -.+.....+..|.++|.+++|+
T Consensus 139 ~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPN-----SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp TTCCSCEEEEEECTT-----SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred cccCCCeeEEEEcCC-----CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 4456 9999999999 8999999999999999842 1234555666788999999998
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+.+++++ .|+.|++||+++++.+..+..+. ..+.+++| +++..+++|.|+.|++|++..
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASET------LPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSS------CCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccCC------CCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 5677766 79999999999999888876543 23677888 678888888999999999987
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=6.6e-19 Score=189.52 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=153.1
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecC-C-------CeeEEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEec
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFL-G-------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSL 122 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~-~-------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~ 122 (724)
+.|.+ |+| ++++|++|+.||+|++||+. + ..+..+.+|...|++++|+|++ .+|++|+.||.|++||+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 44555 667 78999999999999999994 3 4467889999999999999998 69999999999999999
Q ss_pred cCCceE-EE--eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCC-eEEEEEe--CCEE
Q 004914 123 FTDEKM-KF--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGP-VHVVKWR--TSLI 194 (724)
Q Consensus 123 ~~~~~~-~~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~-V~~l~~~--~~~l 194 (724)
.++... .+ ..|. .|.+++|+|+ +..+++|+.||.|++|+.+ .+.....+ ..|.+. +.++.|+ +.++
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSRD-----GALICTSCRDKRVRVIEPR-KGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECTT-----SSCEEEEETTSEEEEEETT-TTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred CCCCccEEEecCCCCCceEEEEECCC-----CCEEEEEecCCcEEEEeCC-CCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 987654 45 5677 9999999999 8999999999999999986 45555555 567665 8999998 6788
Q ss_pred EEE----cCCcEEEEEcCCCce-EEEecCCCCCCCCCCCCCceee-cCCCeEE-EE-eCCeEEEEEEeeCC
Q 004914 195 AWA----NDAGVKVYDAANDQR-ITFIERPRGSPRPELLLPHLVW-QDDTLLV-IG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 195 a~~----~d~~i~i~d~~~~~~-~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~-~g-~d~~i~vw~~~~~~ 257 (724)
+++ .|+.|++||++++.. +...... +...+..+.| +++..++ +| .|+.|++|++.++.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEeccCCCCceEEEEcCccccCCceEEecc-----CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 877 588999999987654 3222211 1223667888 5677775 56 69999999998754
No 68
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-18 Score=182.95 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=140.8
Q ss_pred EEEEeCCCeEEEEecCCCe----------eEEE-cCCccceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCceEEEe--
Q 004914 67 IALGTHAGTVHILDFLGNQ----------VKEF-PAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKMKFD-- 131 (724)
Q Consensus 67 la~g~~dg~I~i~d~~~~~----------~~~~-~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~~~~-- 131 (724)
+++|+.||+|++|+..+.. +..+ .+|.++|.+++|+| +++++++|+.||+|++||+.++......
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 8899999999999764321 3333 36778999999999 9999999999999999999997775432
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-eEecc-CCCCeEEEEEe--CCEEEEEcCCcEEEEE
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-QVLHS-GEGPVHVVKWR--TSLIAWANDAGVKVYD 206 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-~~l~~-~~~~V~~l~~~--~~~la~~~d~~i~i~d 206 (724)
.+. .|++++|+|+ +.++++|+.||.|++|+.+ .+... ..+.. |.++|++++|+ |.++++++++.|++||
T Consensus 168 ~~~~~i~~~~~~pd-----g~~lasg~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd 241 (343)
T 3lrv_A 168 KSDVEYSSGVLHKD-----SLLLALYSPDGILDVYNLS-SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD 241 (343)
T ss_dssp CSSCCCCEEEECTT-----SCEEEEECTTSCEEEEESS-CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred CCCCceEEEEECCC-----CCEEEEEcCCCEEEEEECC-CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence 333 8999999999 8999999999999999986 44444 56777 89999999999 6788888777999999
Q ss_pred cCCCceEEEecCCCCCCCCCCCC--Cceee-cCCCeEEEE-e-CCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGSPRPELLL--PHLVW-QDDTLLVIG-W-GTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~--~~l~~-~~~~~l~~g-~-d~~i~vw~~~~~~ 257 (724)
+++++.+..+..... +...+ .+++| +++..|++| . ++.|++|++.+..
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTI---PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTSSTTCBSSCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cCCCCcceeeccccc---ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 998876544332110 11112 35888 688888887 4 8999999997643
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.82 E-value=5.6e-20 Score=195.84 Aligned_cols=189 Identities=13% Similarity=0.186 Sum_probs=145.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC-C---eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG-N---QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-- 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~-~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-- 126 (724)
+.|.+ |++++++|++|+.||+|++||+.. . ....+.+|...|++++|+|++++|++|+.||.|++||+.++.
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 34544 777899999999999999999943 3 366778899999999999999999999999999999999865
Q ss_pred --eEEEeC-CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc-----------------CCccceEeccCCCCeE
Q 004914 127 --KMKFDY-HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW-----------------LGYRDQVLHSGEGPVH 185 (724)
Q Consensus 127 --~~~~~~-~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~-----------------~~~~~~~l~~~~~~V~ 185 (724)
...+.. |. .|++++|+|+ ++.+++|+.||.+++|+..- .+.....+ .|.++|.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 209 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPN-----NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVH 209 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTT-----SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEE
T ss_pred eeeeEeecccCCCeEEEEEcCC-----CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEE
Confidence 455666 77 9999999999 89999999999999998631 11223333 7889999
Q ss_pred EEEEe--CCEEEEE-cCCcEEEEEcCCCce----EEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 186 VVKWR--TSLIAWA-NDAGVKVYDAANDQR----ITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 186 ~l~~~--~~~la~~-~d~~i~i~d~~~~~~----~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+++|+ +++++++ .|+.|++||+.+++. +..+..+ ...+.+++| +++..|++|.++.+.+|+...
T Consensus 210 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 210 AVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS------QLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp EEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS------SSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC------CCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 99999 5666666 799999999998876 4444333 334778899 688889999777777887764
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=5.2e-19 Score=192.49 Aligned_cols=199 Identities=13% Similarity=0.142 Sum_probs=149.9
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
+.|++ |+| ++++|++|+.||+|++||+.+.....+.. +...+.+++|+|++.+|++|+.||.|++||+.++.+.
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~ 244 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW 244 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE
Confidence 44655 665 57899999999999999998776655433 3446889999999999999999999999999888777
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCCCeEEEEEe--CCEEEEE-cCCcE
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i 202 (724)
.+..|. +|++++|+|+ +...+++|+.||.|++|+.+-... ......+|.++|++++|+ |.+++++ .|+.|
T Consensus 245 ~~~~h~~~v~~v~~~p~----~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i 320 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPC----CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEI 320 (435)
T ss_dssp CSBCCSSCEEEEEECTT----CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred EEecccceEEeeeecCC----CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEE
Confidence 888888 9999999998 345888999999999998752221 223335688999999998 6777776 79999
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-------------eCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-------------WGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-------------~d~~i~vw~~~~~~ 257 (724)
++||+.++.....+..+..............| +++..++++ .++.|++||..++.
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 99999998877665554332222222334455 455555555 23469999876654
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=2.2e-18 Score=185.40 Aligned_cols=188 Identities=17% Similarity=0.233 Sum_probs=150.7
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCC-----eeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCc-----
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGN-----QVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDE----- 126 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~-----~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~----- 126 (724)
+++++.. ++++|+.+|.|++|++... .+..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 3444333 3345788999999998432 3456788999999999999 99999999999999999998852
Q ss_pred ---eEEEeCCC-CeeEEEeCCCCCCCCC-CEEEEecCCCeEEEEecccCCccceEe--ccCCCCeEEEEEe--CCEEEEE
Q 004914 127 ---KMKFDYHR-PMKAISLDPDYTRKMS-RRFVAGGLAGHLYLNSKKWLGYRDQVL--HSGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 127 ---~~~~~~~~-~v~~v~~~p~~~~~~~-~~l~~g~~dg~v~l~~~~~~~~~~~~l--~~~~~~V~~l~~~--~~~la~~ 197 (724)
...+..|. .|++++|+|+ + ..+++|+.||.|++|+.. .+.....+ ..|.+.|.+++|+ +.+++++
T Consensus 121 ~~~~~~~~~h~~~v~~~~~~p~-----~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 121 REPVITLEGHTKRVGIVAWHPT-----AQNVLLSAGCDNVILVWDVG-TGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CSCSEEEECCSSCEEEEEECSS-----BTTEEEEEETTSCEEEEETT-TTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCceEEecCCCCeEEEEEECcC-----CCCEEEEEcCCCEEEEEECC-CCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 45677888 9999999999 5 699999999999999986 45666667 6789999999998 5666666
Q ss_pred -cCCcEEEEEcCCCceEEEe-cCCCCCCCCCCCCCceee-cCCCeEEEE----eCCeEEEEEEeeCC
Q 004914 198 -NDAGVKVYDAANDQRITFI-ERPRGSPRPELLLPHLVW-QDDTLLVIG----WGTYIKIASIKTNQ 257 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i-~~~~~~~~~~~~~~~l~~-~~~~~l~~g----~d~~i~vw~~~~~~ 257 (724)
.|+.|++||+++++.+..+ ..+.+. .+..+.| +++..+++| .++.|++||+++..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGT-----RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSS-----SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCC-----cceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 7999999999999988876 333221 2567788 678888887 68899999997754
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.82 E-value=1.8e-18 Score=187.99 Aligned_cols=189 Identities=15% Similarity=0.257 Sum_probs=150.6
Q ss_pred EEEEecCC-EEEEEeCCCeEEEEecCC-Ce-------eEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCC--
Q 004914 58 SCVAVAER-MIALGTHAGTVHILDFLG-NQ-------VKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTD-- 125 (724)
Q Consensus 58 ~~~s~~~~-~la~g~~dg~I~i~d~~~-~~-------~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~-- 125 (724)
.+|++++. +|++|+.||.|++|++.. .. ...+.+|...|.+++|+| ++..|++++.||.|++||++++
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 35777777 999999999999999953 11 356778999999999999 6789999999999999999975
Q ss_pred --ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--C-CEEEEE-c
Q 004914 126 --EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWA-N 198 (724)
Q Consensus 126 --~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~-~~la~~-~ 198 (724)
....+..|. +|++++|+|+ +...+++|+.||.|++|+.+..+.....+..|.++|++++|+ + .+++++ .
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~----~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPY----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred CcceeEeecCCCCeEEEEeCCC----CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 344566777 9999999998 234799999999999999874456677788899999999999 3 456655 7
Q ss_pred CCcEEEEEcCCC--------------ceEEEecCCCCCCCCCCCCCceee-cCCC-eEEEE-eCCeEEEEEEeeC
Q 004914 199 DAGVKVYDAAND--------------QRITFIERPRGSPRPELLLPHLVW-QDDT-LLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 199 d~~i~i~d~~~~--------------~~~~~i~~~~~~~~~~~~~~~l~~-~~~~-~l~~g-~d~~i~vw~~~~~ 256 (724)
|+.|++||+... +.+... ..+...+..++| +++. +++++ .|+.|++|++...
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEc------CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999999862 333332 233445788999 5666 67777 8999999999764
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4e-19 Score=196.59 Aligned_cols=179 Identities=8% Similarity=0.062 Sum_probs=134.3
Q ss_pred EEeCCCeEEEEecCC-Ce----eEEEcCCccceeEEEEcCC------CCEEEEEeCCCCEEEEeccCCce----------
Q 004914 69 LGTHAGTVHILDFLG-NQ----VKEFPAHTAAVNDLSFDVD------GEYVGSCSDDGSVVINSLFTDEK---------- 127 (724)
Q Consensus 69 ~g~~dg~I~i~d~~~-~~----~~~~~~h~~~V~~l~~s~~------g~~l~s~~~Dg~v~iwd~~~~~~---------- 127 (724)
+|+.||+|+||++.+ .. ...+..|.+.|++++|+|+ +.+||||+.||+|++||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 355789999999943 32 1345678899999999997 57999999999999999986531
Q ss_pred --EEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEE--Ee--C-CEEEEE-c
Q 004914 128 --MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK--WR--T-SLIAWA-N 198 (724)
Q Consensus 128 --~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~--~~--~-~~la~~-~ 198 (724)
..+..|. +|++++|+|+ ..|++|+.||+|++|+..-.......+..|.++|++++ |+ | .+++++ .
T Consensus 258 p~~~l~~h~~~v~sv~~s~~------~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP------TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS------SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred ceEEEEcCCCCEEEEEecCC------CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 2566777 9999999987 58999999999999998622234456788999999994 45 4 677777 6
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|++|++||+++++....+..+... ..+.+++| +++..+++| .|++|++||++++.
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~----~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRG----SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSC----CSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred CCeEEEEECCCCCccccccccccc----CcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 999999999987765443322110 12457889 567788888 88899999987644
No 74
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.82 E-value=1.3e-18 Score=176.69 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=131.2
Q ss_pred CCCeEEEEec--CCCeeEEEcCCccceeEEEEcC---CCCEEEEEeCCCCEEEEeccCCce-EEEeCCC----CeeEEEe
Q 004914 72 HAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDV---DGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR----PMKAISL 141 (724)
Q Consensus 72 ~dg~I~i~d~--~~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~----~v~~v~~ 141 (724)
.++.|++|++ +|+.+..+.+|...++.++|++ ++..|+||+.|++|+|||+.+++. .++..+. .+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 3889999998 3666777788999999999999 779999999999999999999876 4565432 6778899
Q ss_pred CCCCCCCCCCEE------------EEecCCCeEEEEecccCCccceEe-----ccCCCCeEEEEEeCCEEEEE-cCCcEE
Q 004914 142 DPDYTRKMSRRF------------VAGGLAGHLYLNSKKWLGYRDQVL-----HSGEGPVHVVKWRTSLIAWA-NDAGVK 203 (724)
Q Consensus 142 ~p~~~~~~~~~l------------~~g~~dg~v~l~~~~~~~~~~~~l-----~~~~~~V~~l~~~~~~la~~-~d~~i~ 203 (724)
+|+ +..+ ++|+.|+++++|+.. .+....++ .+|.+.+.+..+++.+++++ .|++|+
T Consensus 235 Spd-----G~~lvs~s~~~~~w~laSGs~D~tIklWd~~-tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIk 308 (356)
T 2w18_A 235 SEM-----GLLFIVLSHPCAKESESLRSPVFQLIVINPK-TTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIA 308 (356)
T ss_dssp EET-----TEEEEEEC------------CCEEEEEEETT-TTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEE
T ss_pred CCC-----CCEEEEeccCCCcceeeccCCCcEEEEEECC-CCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEE
Confidence 998 6665 668889999999875 44433333 35555666666678888877 699999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
|||+.+++.+.++..+... ....++| +++++|++| .|++|++||+
T Consensus 309 IWDl~tGk~l~tL~gH~~~-----vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 309 IWDLLLGQCTALLPPVSDQ-----HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTTCSEEEEECCC--C-----CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCcEEEEecCCCCC-----eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999988654322 2345789 788999999 9999999986
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.4e-18 Score=184.53 Aligned_cols=199 Identities=20% Similarity=0.247 Sum_probs=152.8
Q ss_pred CceEE--EEec--CCEEEEEeCCCeEEEEecC-CC--eeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC
Q 004914 55 DAASC--VAVA--ERMIALGTHAGTVHILDFL-GN--QVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 55 ~~i~~--~s~~--~~~la~g~~dg~I~i~d~~-~~--~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
..|++ |+++ +++|++|+.||.|++||+. +. .+..+..|...|++++|+|+ +.++++++.||.|++||+.++
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 44655 5555 8999999999999999994 43 56777889999999999999 999999999999999999885
Q ss_pred c---eEEEeCCC-CeeEEEeCCCCCC--------CCCCEEEEecCCCeEEEEecccCC---ccceEeccCCCCeEEEEEe
Q 004914 126 E---KMKFDYHR-PMKAISLDPDYTR--------KMSRRFVAGGLAGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 126 ~---~~~~~~~~-~v~~v~~~p~~~~--------~~~~~l~~g~~dg~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~ 190 (724)
. ...+..|. +|.+++|+|.... .++..+++|+.||.|++|+..-.. .....+..|.++|.+++|+
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 2 34566777 9999999992000 016899999999999999876222 1234566789999999999
Q ss_pred C-----CEEEEE-cCCcEEEEEcCCCce---EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 191 T-----SLIAWA-NDAGVKVYDAANDQR---ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 ~-----~~la~~-~d~~i~i~d~~~~~~---~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+ .+++++ .|+.|++||+.++.. ..... ...+...+.+++| +++..|+++ .|+.|++|++....
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS----SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec----cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 3 466666 799999999997642 12211 1223345778899 678888887 89999999998743
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6e-19 Score=208.68 Aligned_cols=191 Identities=11% Similarity=0.147 Sum_probs=153.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCCee
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMK 137 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~ 137 (724)
+|+|++++||+|+.||+|++|+..+........|..+|++++|+| |++|++++.||+|++||+.+++.. .+..+..|+
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~ 102 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT 102 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE
Confidence 588899999999999999999996655444456888999999999 889999999999999999987654 455334999
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-----------eEeccCCCCeEEEEEeC---CEEEEE-cCCcE
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-----------QVLHSGEGPVHVVKWRT---SLIAWA-NDAGV 202 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-----------~~l~~~~~~V~~l~~~~---~~la~~-~d~~i 202 (724)
+++|+|+ ++++++|+.||.|++|+.. .+... ..+.+|.++|++++|++ ..++++ .|+.|
T Consensus 103 ~v~~sp~-----g~~l~sgs~dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 103 SIDTDAS-----LDWMLIGLQNGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp EEECCTT-----CSEEEEEETTSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred EEEECCC-----CCEEEEEcCCCcEEEEECC-CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 9999999 8999999999999999875 22211 22356889999999994 466666 68899
Q ss_pred EEEEcCCCceEEEecCCC--C----------CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 203 KVYDAANDQRITFIERPR--G----------SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~--~----------~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+||+++++.+..+..+. + ...+...+.+++| +++..|++| .|+.|++||++++.
T Consensus 177 -lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 177 -TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp -EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred -EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999998887775441 0 0122345788999 688889998 89999999997654
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.7e-19 Score=205.72 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=152.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC---CeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCCc---eEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG---NQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDE---KMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~---~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~---~~~~ 130 (724)
+|+++++++++|+.||+|++||..+ ..+..+.+|.++|++++|+|+ |++|++|+.||.|++||+.++. ...+
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc
Confidence 4778899999999999999999942 346778899999999999988 9999999999999999999874 3456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEeC---------------CE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRT---------------SL 193 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~~---------------~~ 193 (724)
..|. +|++++|+|+ ..+..+++|+.||.|++|+..-.. .....+..|.++|.++.|++ .+
T Consensus 96 ~~h~~~V~~v~~sp~---~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 96 AVHSASVNSVQWAPH---EYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp CCCSSCEEEEEECCG---GGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred cCCCCCeEEEEECCC---CCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 6777 9999999997 115899999999999999876322 33455677899999999974 34
Q ss_pred EEEE-cCCcEEEEEcCCCc----eEEEecCCCCCCCCCCCCCceee-cC---CCeEEEE-eCCeEEEEEEeeCC
Q 004914 194 IAWA-NDAGVKVYDAANDQ----RITFIERPRGSPRPELLLPHLVW-QD---DTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~----~~~~i~~~~~~~~~~~~~~~l~~-~~---~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++++ .|+.|++||++++. ....+.. |...+.+++| ++ +..+++| .|+.|++||++++.
T Consensus 173 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEG------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEECC------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEEECCCeEEEEeccCCcccceeeeeecC------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5555 79999999998774 3333332 3345788999 55 6788888 89999999998864
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.81 E-value=2.4e-18 Score=181.72 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=142.5
Q ss_pred EEEec---CCEEEEEeCCCeEEEEecC--CCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC
Q 004914 59 CVAVA---ERMIALGTHAGTVHILDFL--GNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~---~~~la~g~~dg~I~i~d~~--~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 132 (724)
+|+|+ |++|++|+.||.|++||.. +..+ ..+.+|.+.|++++|+|++++|++|+.||.|++||+.++....+..
T Consensus 46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 125 (368)
T 3mmy_A 46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125 (368)
T ss_dssp EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc
Confidence 47777 5899999999999999995 4544 6788899999999999999999999999999999999988877777
Q ss_pred CC-CeeEEEe--CCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC----------------------------
Q 004914 133 HR-PMKAISL--DPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE---------------------------- 181 (724)
Q Consensus 133 ~~-~v~~v~~--~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~---------------------------- 181 (724)
|. +|++++| +|+ +..+++|+.||.|++|+.. .+.....+..+.
T Consensus 126 ~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPN-----YSCVMTGSWDKTLKFWDTR-SSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp CSSCEEEEEEEECSS-----CEEEEEEETTSEEEEECSS-CSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred ccCceEEEEEEeCCC-----CCEEEEccCCCcEEEEECC-CCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 87 9999999 887 7899999999999999865 333332222211
Q ss_pred -------------CCeEEEEEe--CC-----EEEEEcCCcEEEEEcCCC---ceEEEecCCCCC------CCCCCCCCce
Q 004914 182 -------------GPVHVVKWR--TS-----LIAWANDAGVKVYDAAND---QRITFIERPRGS------PRPELLLPHL 232 (724)
Q Consensus 182 -------------~~V~~l~~~--~~-----~la~~~d~~i~i~d~~~~---~~~~~i~~~~~~------~~~~~~~~~l 232 (724)
..+.++.+. +. +++++.|+.|++|++... ..+..+..+... ..+...+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence 222333332 21 444447888888888876 333344333211 1122247788
Q ss_pred ee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 233 VW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 233 ~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
+| +++..|++| .|+.|++||+.++
T Consensus 280 ~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 280 AFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEecCCCEEEEEccCCeEEEEECCCC
Confidence 88 677788888 8999999998754
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.81 E-value=8.6e-19 Score=187.86 Aligned_cols=195 Identities=14% Similarity=0.152 Sum_probs=155.7
Q ss_pred CceEE--EE----ecCCE-EEEEeCCCeEEEEecC-------CCeeE-----EE-------cCCccceeEEEEcCCCCEE
Q 004914 55 DAASC--VA----VAERM-IALGTHAGTVHILDFL-------GNQVK-----EF-------PAHTAAVNDLSFDVDGEYV 108 (724)
Q Consensus 55 ~~i~~--~s----~~~~~-la~g~~dg~I~i~d~~-------~~~~~-----~~-------~~h~~~V~~l~~s~~g~~l 108 (724)
..+.+ |+ ++++. +++|+.+|.|++||+. +..+. .+ ..|...|++++|+|++ .+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 34544 77 78999 9999999999999994 34444 66 4488999999999999 99
Q ss_pred EEEeCCCCEEEEeccCCce-EEEeC---C---C-CeeEEEeCCCCCCCCCCEEEEecCC---CeEEEEecccCCccceEe
Q 004914 109 GSCSDDGSVVINSLFTDEK-MKFDY---H---R-PMKAISLDPDYTRKMSRRFVAGGLA---GHLYLNSKKWLGYRDQVL 177 (724)
Q Consensus 109 ~s~~~Dg~v~iwd~~~~~~-~~~~~---~---~-~v~~v~~~p~~~~~~~~~l~~g~~d---g~v~l~~~~~~~~~~~~l 177 (724)
++|+.||.|++||+.++.. ..+.. | . +|.+++|+|+ +..+++|+.| |.|++|+.. .+.....+
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~-----~~~l~~~~~d~~~g~i~i~d~~-~~~~~~~~ 274 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ-----GSLLAIAHDSNSFGCITLYETE-FGERIGSL 274 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS-----TTEEEEEEEETTEEEEEEEETT-TCCEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC-----CCEEEEEecCCCCceEEEEECC-CCccccee
Confidence 9999999999999998665 45676 6 6 9999999999 8999999999 999999986 45666667
Q ss_pred cc-------------CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCC---------------C
Q 004914 178 HS-------------GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRP---------------E 226 (724)
Q Consensus 178 ~~-------------~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~---------------~ 226 (724)
.. |.++|.+++|+ +.+++++ .|+.|++||+.+++.+..+..+.....+ .
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 354 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence 76 88999999999 6777777 6999999999999998888732111112 5
Q ss_pred CCCCceee-cCC----------CeEEEE-eCCeEEEEEEeeC
Q 004914 227 LLLPHLVW-QDD----------TLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 227 ~~~~~l~~-~~~----------~~l~~g-~d~~i~vw~~~~~ 256 (724)
..+.+++| +++ ..|++| .|+.|++|++.++
T Consensus 355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 56788999 454 578887 8999999999875
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-18 Score=178.58 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=157.6
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCceEEEeC-
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMKFDY- 132 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~- 132 (724)
..+.+++++++.+++|+.+|.|++|| .+.....+..|...|.+++|.| +++.+++++.||.|++||.. .....+..
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~ 182 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-KVIKTFSGI 182 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EEEEEECSS
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-ceEEEEecc
Confidence 55788888999999999999999999 6667788889999999999988 89999999999999999932 33344554
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~ 209 (724)
+. .|.+++|+|+ +. +++|+.||.+++|+.. .+.....+..|.++|++++|+ +.+++++.|+.|++||+.+
T Consensus 183 ~~~~i~~~~~~~~-----~~-~~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 183 HNDVVRHLAVVDD-----GH-FISCSNDGLIKLVDMH-TGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp CSSCEEEEEEEET-----TE-EEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred CcccEEEEEEcCC-----Ce-EEEccCCCeEEEEECC-chhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 56 9999999999 55 9999999999999986 566677788899999999999 5566666899999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
++.+..+..+.. .+.++.| +++.+++++.|+.|++|++.++..
T Consensus 256 ~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 256 GSLKQVITLPAI------SIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp CCEEEEEECSSS------CEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred CceeEEEeccCc------eEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence 998888765542 4678888 566655555999999999987653
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.81 E-value=3.2e-18 Score=187.78 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=151.2
Q ss_pred CceEEEEe--cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEc--CCCCEEEEEeCCCCEEEEeccCCc---
Q 004914 55 DAASCVAV--AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFD--VDGEYVGSCSDDGSVVINSLFTDE--- 126 (724)
Q Consensus 55 ~~i~~~s~--~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s--~~g~~l~s~~~Dg~v~iwd~~~~~--- 126 (724)
+.|.++.. ++ .+++|+.||+|++||+ ++..+..+.+|.+.|++++|+ +++.++++|+.||.|++||+.++.
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 45666544 44 9999999999999999 566778899999999999998 578899999999999999998754
Q ss_pred ---------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe
Q 004914 127 ---------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (724)
Q Consensus 127 ---------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V 184 (724)
...+..|. .|.++ +++ +..+++|+.||.|++|+.. .+.....+.+|.++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-----~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-----GNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRI 313 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-----TTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-----CCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCE
Confidence 22455566 77776 455 6799999999999999986 566677778899999
Q ss_pred EEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 185 HVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 185 ~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+++|+ +..++++ .|+.|++||+.+++.+..+..+. ..+.++.|. +..+++| .|+.|++||+.+.
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT------ALVGLLRLS-DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS------SCEEEEEEC-SSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC------CcEEEEEEc-CCEEEEEeCCCcEEEEECCCC
Confidence 999999 5677666 79999999999999988876543 346677776 5666766 8999999998763
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.81 E-value=5.7e-18 Score=181.72 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=154.8
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecCC-CeeEEE-------------cCCccceeEEEEcC-CCCEEEEEeCCCC
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFLG-NQVKEF-------------PAHTAAVNDLSFDV-DGEYVGSCSDDGS 116 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~-~~~~~~-------------~~h~~~V~~l~~s~-~g~~l~s~~~Dg~ 116 (724)
+.|+| |+| ++++|++|+.||.|++||... .....+ .+|...|++++|+| ++.++++++.||.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 34444 777 889999999999999999943 332222 25999999999999 7789999999999
Q ss_pred EEEEeccCCceEE-EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-
Q 004914 117 VVINSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS- 192 (724)
Q Consensus 117 v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~- 192 (724)
|++||+.++.... +.....+.+++++|.. .++..+++|+.+|.+.+|+.. .+.....+..|.++|.+++|+ +.
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 200 (408)
T 4a11_B 124 LKVWDTNTLQTADVFNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQEILAVSWSPRYDY 200 (408)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESS-SSCCCEEECCCCSCEEEEEECSSCTT
T ss_pred EEEeeCCCCccceeccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCC-CcceeeeecCCCCcEEEEEECCCCCc
Confidence 9999999977654 4433499999999961 114599999999999999986 566677788899999999999 34
Q ss_pred EEEEE-cCCcEEEEEcCCCc-eEEEecCCCC---------CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 193 LIAWA-NDAGVKVYDAANDQ-RITFIERPRG---------SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 193 ~la~~-~d~~i~i~d~~~~~-~~~~i~~~~~---------~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+++++ .|+.|++||++++. .+..+..... ...+...+.+++| +++..+++| .|+.|++||+.++..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 56555 79999999998765 3333322111 1235556778889 677888888 899999999987653
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.81 E-value=6.6e-18 Score=208.54 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=165.5
Q ss_pred CceE--EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 55 DAAS--CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 55 ~~i~--~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
+.|+ +|+++|+++++|+.||+|++||. ++..+..+.+|.+.|++++|+|+|+++++|+.||.|++||+.+++. ..+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 4454 47889999999999999999999 6777889999999999999999999999999999999999998765 467
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEE
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d 206 (724)
..|. +|.+++|+|+- ++..+++|+.||.|++|+.. .+.....+.+|.++|++++|+ +.+++++ .|+.|++||
T Consensus 696 ~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp ECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETT-SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred cCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECC-CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 8888 99999999951 15689999999999999986 566677788899999999999 5677766 799999999
Q ss_pred cCCCceEEEecCCCCC-------CCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 207 AANDQRITFIERPRGS-------PRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~-------~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+.++.....+...... ......+.+++| +++..++++.++.+.+|++.++.
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 9998877766543211 112234667888 78888999999999999987643
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.81 E-value=4.8e-18 Score=177.95 Aligned_cols=186 Identities=8% Similarity=0.061 Sum_probs=149.3
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe----eEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEec-cCCceEEEeC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ----VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSL-FTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~----~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~-~~~~~~~~~~ 132 (724)
+|+|++++|++|+.||.|++|+..... ...+.+|...|++++|+|+++ +|++|+.||.|++||+ .++....+..
T Consensus 18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc
Confidence 488899999999999999999994333 556678999999999999999 9999999999999999 8888888887
Q ss_pred --CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC--------CccceEeccCCCCeEEEEEeCCEEEEE-cCC
Q 004914 133 --HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL--------GYRDQVLHSGEGPVHVVKWRTSLIAWA-NDA 200 (724)
Q Consensus 133 --~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~--------~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~ 200 (724)
|. .|.+++|+|. ..+++|+.||.|++|+..-. +.....+. +.+.|.+++|++..++++ .|+
T Consensus 98 ~~~~~~v~~l~~~~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~ 170 (342)
T 1yfq_A 98 NEANLGICRICKYGD------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNS 170 (342)
T ss_dssp CCCCSCEEEEEEETT------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTT
T ss_pred cCCCCceEEEEeCCC------CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCC
Confidence 88 9999999984 79999999999999987520 23333333 788999999996556555 799
Q ss_pred cEEEEEcCC-CceE-EEecCCCCCCCCCCCCCceee-c-CCCeEEEE-eCCeEEEEEEeeC
Q 004914 201 GVKVYDAAN-DQRI-TFIERPRGSPRPELLLPHLVW-Q-DDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 201 ~i~i~d~~~-~~~~-~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.|++||+++ +... ..... .+...+.++.| + ++..+++| .++.|++|+++..
T Consensus 171 ~i~i~d~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIEES-----GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEEESSCCTTCCCEEEEC-----SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred eEEEEECCccccccceeeec-----CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 999999987 5432 11111 12234677888 5 68888888 8899999999775
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.81 E-value=5e-18 Score=175.71 Aligned_cols=187 Identities=10% Similarity=0.138 Sum_probs=137.9
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEE--cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-----
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM----- 128 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~----- 128 (724)
+.+||+++ +||+|. |++|+|||. +|+.++.+ .+|...|++++|+|+|+++++|+.||+|++||+.+++..
T Consensus 30 ~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 30 LVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp CEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 45788764 787775 899999999 66766655 467889999999999999999999999999998875421
Q ss_pred -------------------------------------EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccC
Q 004914 129 -------------------------------------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (724)
Q Consensus 129 -------------------------------------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (724)
.+..|. .+.+++++++ ++.+++|+.||.|++|+..-.
T Consensus 108 h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-----GRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-----SSEEEEEETTSCEEEEESSCB
T ss_pred ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-----CCEEEEEecCcceeEEECCCC
Confidence 123444 6777888887 789999999999999975311
Q ss_pred C---ccceEec--------------------------------------------cCCCCeEEEEEe--CCE-EEEE--c
Q 004914 171 G---YRDQVLH--------------------------------------------SGEGPVHVVKWR--TSL-IAWA--N 198 (724)
Q Consensus 171 ~---~~~~~l~--------------------------------------------~~~~~V~~l~~~--~~~-la~~--~ 198 (724)
. ....... .+...+..+.|. +.. ++++ .
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcC
Confidence 0 0000000 122345556666 333 3333 5
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|+.|++||+.+++++..+..|. ..+.+++| +++..|++| .|++|++||+.+.
T Consensus 263 d~~i~iwd~~~~~~~~~l~gH~------~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELKGHT------SRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEECCCCcEEEEEcCCC------CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 8899999999999998876543 45788999 688889888 8999999998754
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.81 E-value=5.1e-18 Score=177.44 Aligned_cols=196 Identities=17% Similarity=0.250 Sum_probs=146.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCe-eEEE------------------------------------------
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQ-VKEF------------------------------------------ 89 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~------------------------------------------ 89 (724)
+.|.+ |+++++++++|+.||.|++|+..... ....
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 34544 77899999999999999999874322 1111
Q ss_pred -cCCccceeEEEEcCCC--CEEEEEeCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEE
Q 004914 90 -PAHTAAVNDLSFDVDG--EYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (724)
Q Consensus 90 -~~h~~~V~~l~~s~~g--~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (724)
.+|...|.+++|++++ ..+++++.|+.|++||+.++... .+..|. +|++++|+|+ +++|++|+.||.|++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-----GSLCASGGKDGQAML 241 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-----SSEEEEEETTCEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC-----CCEEEEEeCCCeEEE
Confidence 2355667777777654 46777888888888888776553 466777 9999999999 899999999999999
Q ss_pred EecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCC---CCCCCCCCCceee-cCCC
Q 004914 165 NSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRG---SPRPELLLPHLVW-QDDT 238 (724)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~---~~~~~~~~~~l~~-~~~~ 238 (724)
|+.. .......+. +...|.++.|+ +.+++++.|+.|++||++++..+..+..+.. ...+...+.+++| +++.
T Consensus 242 wd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 242 WDLN-EGKHLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp EETT-TTEEEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred EEec-cCceeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 9875 334344433 45679999998 5777777999999999999888776654321 2335556788999 6888
Q ss_pred eEEEE-eCCeEEEEEEeeCC
Q 004914 239 LLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 239 ~l~~g-~d~~i~vw~~~~~~ 257 (724)
.|++| .|+.|+|||+.+|.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 89988 89999999999864
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.81 E-value=2.4e-17 Score=179.89 Aligned_cols=189 Identities=18% Similarity=0.289 Sum_probs=158.0
Q ss_pred CceEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
..+.+++++++.+++|+.||+|++||. ++..+..+.+|...|.+++| +|+++++|+.||.|++||+.++... .+..
T Consensus 200 ~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 200 STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred CcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 557888888999999999999999999 56777888899999999998 6889999999999999999887654 5677
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~ 210 (724)
|. +|.+++| + +..+++|+.||.|++|+.. .+.....+..|...+.++.+++.+++++ .|+.|++||++++
T Consensus 278 ~~~~v~~~~~--~-----~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 278 HTNRVYSLQF--D-----GIHVVSGSLDTSIRVWDVE-TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp CSSCEEEEEE--C-----SSEEEEEETTSCEEEEETT-TCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred CCCceEEEEE--C-----CCEEEEEeCCCeEEEEECC-CCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 77 9999999 4 5789999999999999986 5666777888999999999998888777 6999999999999
Q ss_pred ceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.+..+..+. .+...+.++.|. +..+++| .||.|++||+.++.
T Consensus 350 ~~~~~~~~~~---~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 350 QCLQTLQGPN---KHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp CEEEEECSTT---SCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEccCC---CCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCc
Confidence 9888776532 233456778884 5677777 89999999987654
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.80 E-value=4.1e-19 Score=184.48 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=147.7
Q ss_pred CceEE--EEe--cCCEEEEEeCCCeEEEEecC-C--CeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC
Q 004914 55 DAASC--VAV--AERMIALGTHAGTVHILDFL-G--NQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 55 ~~i~~--~s~--~~~~la~g~~dg~I~i~d~~-~--~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
+.|.+ |++ ++++|++|+.||+|++||.. + .....+.+|...|++++|+|+ |.+|++|+.||+|++||+.++
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 44655 444 37899999999999999994 3 245678899999999999998 789999999999999999875
Q ss_pred c-e---EEEeCCC-CeeEEEeCCCCCC------------CCCCEEEEecCCCeEEEEecccCC--ccceEeccCCCCeEE
Q 004914 126 E-K---MKFDYHR-PMKAISLDPDYTR------------KMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHV 186 (724)
Q Consensus 126 ~-~---~~~~~~~-~v~~v~~~p~~~~------------~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~l~~~~~~V~~ 186 (724)
. . ..+..|. .|.+++|+|+... ..+..|++|+.||.|++|+..-.+ .....+.+|.++|.+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence 3 2 2345667 8999999997210 013689999999999999874221 234566789999999
Q ss_pred EEEeC------CEEEEE-cCCcEEEEEcCCCc----eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 187 VKWRT------SLIAWA-NDAGVKVYDAANDQ----RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 187 l~~~~------~~la~~-~d~~i~i~d~~~~~----~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
++|++ .+++++ .|++|++|++.+.. ....+.. +...+.+++| +++..|++| .|+.|++|+.
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK------FNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE------CSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc------CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 99983 567766 79999999987621 1111111 2335778899 678888888 8999999998
Q ss_pred ee
Q 004914 254 KT 255 (724)
Q Consensus 254 ~~ 255 (724)
..
T Consensus 292 ~~ 293 (316)
T 3bg1_A 292 SV 293 (316)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-17 Score=170.93 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=144.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC-CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc----eEEEeCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE----KMKFDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~----~~~~~~~ 133 (724)
++ ++++++++|+.||.|++||... .....+..|...|.+++|+|+++++++|+.||.|++|++.... ...+..|
T Consensus 25 ~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 25 VA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp EE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC
T ss_pred Ee-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc
Confidence 45 7899999999999999999954 4467788899999999999999999999999999999987632 4567777
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~ 208 (724)
. +|.+++| + ++.+++|+.||.+++|+ .+.....+..|.++|.++.|. +..++++ .|+.|++||
T Consensus 104 ~~~i~~~~~--~-----~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-- 171 (313)
T 3odt_A 104 QGNVCSLSF--Q-----DGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-- 171 (313)
T ss_dssp SSCEEEEEE--E-----TTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--
T ss_pred ccCEEEEEe--c-----CCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--
Confidence 7 9999999 3 46999999999999998 345666777899999999996 5666666 799999999
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.++....+... +...+.++.| +++. +++| .++.|++||++++.
T Consensus 172 ~~~~~~~~~~~-----~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 172 NDKVIKTFSGI-----HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp TTEEEEEECSS-----CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred cCceEEEEecc-----CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 44555554432 2234778888 4555 6666 89999999987643
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.2e-18 Score=188.34 Aligned_cols=179 Identities=10% Similarity=0.080 Sum_probs=142.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCcc-----ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce------
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTA-----AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK------ 127 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~-----~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~------ 127 (724)
+|||+|+.||+++.||.|++||..+ .+..+. |.. .|.+++|||+|++|++|+.||+|++||+.++..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 4899999999999999999999755 455566 665 599999999999999999999999999998752
Q ss_pred --EEE----eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc---ceEe-ccCCCCeEEEEEeCCEEEE
Q 004914 128 --MKF----DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR---DQVL-HSGEGPVHVVKWRTSLIAW 196 (724)
Q Consensus 128 --~~~----~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~---~~~l-~~~~~~V~~l~~~~~~la~ 196 (724)
.++ .+|. .|.+++|+|+ + +++++.|+.+++|+.. .+.. ...+ ..|...|.+++|+|+.+++
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPd-----g--Laass~D~tVrlWd~~-~~~~~~~~~tL~~~h~~~V~svaFsg~~LAS 241 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYED-----V--LVAALSNNSVFSMTVS-ASSHQPVSRMIQNASRRKITDLKIVDYKVVL 241 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETT-----E--EEEEETTCCEEEECCC-SSSSCCCEEEEECCCSSCCCCEEEETTEEEE
T ss_pred eeeeeecccccccccEEEEEEcCC-----c--EEEEeCCCeEEEEECC-CCccccceeeecccccCcEEEEEEECCEEEE
Confidence 444 4556 9999999999 5 8889999999999874 2221 2345 4678899999999989998
Q ss_pred EcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--c-CCCeEEEE-eCCeEEEEEEe
Q 004914 197 ANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--Q-DDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 197 ~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~-~~~~l~~g-~d~~i~vw~~~ 254 (724)
+.+++|++||+.+++....... |...+..+.| + ++..++++ .+|+ ++|...
T Consensus 242 a~~~tIkLWd~~~~~~~~~~~g------h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 242 TCPGYVHKIDLKNYSISSLKTG------SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSEEEEEETTTTEEEEEECS------CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EeCCeEEEEECCCCeEEEEEcC------CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8889999999998877443212 3334666777 3 45678888 6888 999863
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.4e-19 Score=196.32 Aligned_cols=189 Identities=10% Similarity=0.060 Sum_probs=147.6
Q ss_pred CceE--EEEec------CCEEEEEeCCCeEEEEecCCCe------------eEEEcCCccceeEEEEcCCCCEEEEEeCC
Q 004914 55 DAAS--CVAVA------ERMIALGTHAGTVHILDFLGNQ------------VKEFPAHTAAVNDLSFDVDGEYVGSCSDD 114 (724)
Q Consensus 55 ~~i~--~~s~~------~~~la~g~~dg~I~i~d~~~~~------------~~~~~~h~~~V~~l~~s~~g~~l~s~~~D 114 (724)
+.|. +|+|+ +++||+|+.||+|++||+.... ...+.+|...|++++|+++ ..|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence 4454 46765 5799999999999999994321 2367889999999999986 489999999
Q ss_pred CCEEEEeccCCc--eEEEeCCC-CeeEE--EeCCCCCCCCC-CEEEEecCCCeEEEEecccCCccceEeccCC--CCeEE
Q 004914 115 GSVVINSLFTDE--KMKFDYHR-PMKAI--SLDPDYTRKMS-RRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE--GPVHV 186 (724)
Q Consensus 115 g~v~iwd~~~~~--~~~~~~~~-~v~~v--~~~p~~~~~~~-~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~--~~V~~ 186 (724)
|+|++||+.++. ...+..|. +|++| +|+|+ + .+|++|+.||+|++|+.+ .+.....+.+|. +.|.+
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~-----g~~~laS~S~D~tvklWD~~-~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF-----EDTVVSTVAVDGYFYIFNPK-DIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTT-----SCCEEEEEETTSEEEEECGG-GHHHHCEEEEECSCCSCCC
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCC-----CCeEEEEeccCCeEEEEECC-CCCcccccccccccCcccc
Confidence 999999998753 34578888 99999 57777 6 799999999999999876 344444444443 35889
Q ss_pred EEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 187 VKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 187 l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
++|+ +..++++ .|++|++||++++..+..+..+ ...+.+++| +++..|++| .|++|++|++..+
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR------ETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC------SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC------CCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 9999 4566666 6889999999998876655433 335788999 678888888 8999999997543
No 92
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-18 Score=186.41 Aligned_cols=193 Identities=14% Similarity=0.235 Sum_probs=152.9
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCC-----CeeEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCc
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLG-----NQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~-----~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
..+.+ |++++++|++|+.||.|++|+... ..+..+.+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 44544 778999999999999999999954 367788899999999999998 8999999999999999998864
Q ss_pred -------eEE---EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC------CCCeEEEEE
Q 004914 127 -------KMK---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG------EGPVHVVKW 189 (724)
Q Consensus 127 -------~~~---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~------~~~V~~l~~ 189 (724)
... ...|. .|.+++|+|+ ++..+++|+.||.|++|+.. .+.....+..+ ..+|.+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQS----LAHVFASAGSSNFASIWDLK-AKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSS----CTTEEEEESSSSCEEEEETT-TTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred cccccccccccccccCCCCCeeEEEeCCC----CCcEEEEEcCCCCEEEEECC-CCCcceEEeccccccccCCceEEEEE
Confidence 222 24566 9999999998 45899999999999999886 34445555544 788999999
Q ss_pred e--C-CEEEEE-cCC---cEEEEEcCCC-ceEEEecCCCCCCCCCCCCCceee-c-CCCeEEEE-eCCeEEEEEEeeCC
Q 004914 190 R--T-SLIAWA-NDA---GVKVYDAAND-QRITFIERPRGSPRPELLLPHLVW-Q-DDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 190 ~--~-~~la~~-~d~---~i~i~d~~~~-~~~~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+ + .+++++ .|+ .|++||++++ ..+..+. ..+...+.+++| + ++..|++| .|+.|++||++++.
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence 9 3 467766 577 9999999986 3443332 023445778999 4 67888888 89999999987643
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.80 E-value=1.1e-17 Score=176.20 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=144.9
Q ss_pred EEEecCC-EEEEEeC---CCeEEEEecCC-CeeE-EEcCCccceeEEEEcCC---CCEEEEEeCCCCEEEEeccCCc--e
Q 004914 59 CVAVAER-MIALGTH---AGTVHILDFLG-NQVK-EFPAHTAAVNDLSFDVD---GEYVGSCSDDGSVVINSLFTDE--K 127 (724)
Q Consensus 59 ~~s~~~~-~la~g~~---dg~I~i~d~~~-~~~~-~~~~h~~~V~~l~~s~~---g~~l~s~~~Dg~v~iwd~~~~~--~ 127 (724)
+|+|++. ++++|+. ||.|++||..+ .... ...+|..+|++++|+|+ |++|++|+.||.|++||+.++. .
T Consensus 25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 104 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV 104 (357)
T ss_dssp EECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS
T ss_pred EEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE
Confidence 5778775 5567776 99999999954 4332 23479999999999999 6999999999999999999865 5
Q ss_pred EEEeCCC-CeeEEEe------CCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCC----CeEEEEE----e--
Q 004914 128 MKFDYHR-PMKAISL------DPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG----PVHVVKW----R-- 190 (724)
Q Consensus 128 ~~~~~~~-~v~~v~~------~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~----~V~~l~~----~-- 190 (724)
..+..|. .|.+++| +|+ ++.+++|+.||.|++|+..-.......+..+.+ .|.++.| +
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~-----~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEG-----APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-C-----CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred EEEEecccceEEEeeccccccCCC-----ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence 6678888 9999965 556 789999999999999988632235566655443 7999985 3
Q ss_pred CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec----CCCeEEEE-eCCeEEEEEEeeCC
Q 004914 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ----DDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 ~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~----~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.+++++ .|+.|++||+++++........ ..+.++.|. ++..+++| .++.|++||++++.
T Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 180 ERVVCAGYDNGDIKLFDLRNMALRWETNIK-------NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECS-------SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred CCEEEEEccCCeEEEEECccCceeeecCCC-------CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 6777777 6899999999998876543322 246788884 78888888 89999999998864
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=189.75 Aligned_cols=192 Identities=17% Similarity=0.214 Sum_probs=147.0
Q ss_pred EEEecC--CEEEEEeCCCeEEEEecCCCee----------------------------------------EE-EcCCccc
Q 004914 59 CVAVAE--RMIALGTHAGTVHILDFLGNQV----------------------------------------KE-FPAHTAA 95 (724)
Q Consensus 59 ~~s~~~--~~la~g~~dg~I~i~d~~~~~~----------------------------------------~~-~~~h~~~ 95 (724)
+|++++ ..+++|+.||+|++|+...... .. ..+|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 577877 7999999999999999843111 12 3679999
Q ss_pred eeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEE--------EeCCC-CeeEEEeCCCCCCCCC-CEEEEecCCCeEEE
Q 004914 96 VNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMK--------FDYHR-PMKAISLDPDYTRKMS-RRFVAGGLAGHLYL 164 (724)
Q Consensus 96 V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~--------~~~~~-~v~~v~~~p~~~~~~~-~~l~~g~~dg~v~l 164 (724)
|++++|+|+|++|++| .||.|++||+.+ +.... +..|. .|++++|+|+ + ..+++|+.||.|++
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN-----SCNTFVYSSSKGTIRL 253 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS-----CTTEEEEEETTSCEEE
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC-----CCcEEEEEeCCCeEEE
Confidence 9999999999999998 799999999984 43332 44666 8999999999 6 89999999999999
Q ss_pred EecccCCcc----ceEeccCCC------------CeEEEEEe--CCEEEEEcCCcEEEEEcCC-CceEEEecCCCCCCCC
Q 004914 165 NSKKWLGYR----DQVLHSGEG------------PVHVVKWR--TSLIAWANDAGVKVYDAAN-DQRITFIERPRGSPRP 225 (724)
Q Consensus 165 ~~~~~~~~~----~~~l~~~~~------------~V~~l~~~--~~~la~~~d~~i~i~d~~~-~~~~~~i~~~~~~~~~ 225 (724)
|+.+ .+.. ...+..+.+ +|.+++|+ |.++++++++.|++||+++ ++.+..+..+......
T Consensus 254 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 254 CDMR-ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp EETT-TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred EECc-CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccc
Confidence 9976 3333 566666665 89999999 6888888669999999997 7776666554311100
Q ss_pred ------CC---CCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 226 ------EL---LLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 226 ------~~---~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.. ....++| +++..|++| .|+.|++||+.++.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 00 0123788 678888888 89999999987643
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.80 E-value=2.9e-17 Score=177.74 Aligned_cols=189 Identities=13% Similarity=0.201 Sum_probs=145.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEec-CCCeeEEE--cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
..+|++ ++.||+|. |++|+|||. +|.....+ .+|...|++++|+|+|++|++|+.||.|++||+.+++.. .+..
T Consensus 110 ~l~wS~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 110 LVDWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp CEEECT-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eEEECC-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 345765 46888886 899999999 56665544 467889999999999999999999999999999997654 5777
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
|. .+.++++++ ..+++|+.|+.+.+|+..........+.+|...+..+.|. +.+++++ .|+.+++|+..
T Consensus 188 h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 188 HSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp CSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred CCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 88 898888754 5899999999999998765456667788899999999998 6777766 79999999998
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-c-CCCeEEEE---eCCeEEEEEEeeC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-Q-DDTLLVIG---WGTYIKIASIKTN 256 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g---~d~~i~vw~~~~~ 256 (724)
+++...... .....+...+..+.| + ++..++++ .|++|++||+.++
T Consensus 261 ~~~~~~~~~--~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 261 PGEGGWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CCSSCSCCS--EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred cccccceee--eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 765321100 001223334667778 3 45566654 5889999998764
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.6e-17 Score=173.84 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=152.1
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC-----CCEEEEeccCCc
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD-----GSVVINSLFTDE 126 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D-----g~v~iwd~~~~~ 126 (724)
..|.+ |++++++|++|+.||.|++||+ ++..+..+. |...|.+++|+|+++++++++.+ |.|++||+.++.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 44554 6778999999999999999999 566666666 88899999999999999999999 999999997642
Q ss_pred ------------eEEEeCCC---CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-
Q 004914 127 ------------KMKFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR- 190 (724)
Q Consensus 127 ------------~~~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~- 190 (724)
...+..+. .+.+++|+|+ ++.+++|+.||.|.+|+..-.+.....+..|.++|.+++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 228 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTK-----GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP 228 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGG-----GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCC-----CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC
Confidence 12233332 8999999999 89999999999999999863356667778899999999998
Q ss_pred -CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC--------------eEEEEE
Q 004914 191 -TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT--------------YIKIAS 252 (724)
Q Consensus 191 -~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~--------------~i~vw~ 252 (724)
+.+++++ .|+.|++||+.+++.+..+... ..+..+.| +++..++++ .++ .+++|+
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYETD-------CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECS-------SCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeecCC-------CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 6777766 7999999999999988877632 23567778 678888888 666 678887
Q ss_pred EeeC
Q 004914 253 IKTN 256 (724)
Q Consensus 253 ~~~~ 256 (724)
+.++
T Consensus 302 ~~~~ 305 (369)
T 3zwl_B 302 KIFE 305 (369)
T ss_dssp TTTC
T ss_pred cCCC
Confidence 6553
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.80 E-value=5.3e-18 Score=178.51 Aligned_cols=184 Identities=14% Similarity=0.187 Sum_probs=144.5
Q ss_pred EecCCEEEEEeCCCeEEEEecC-CC-eeEEEcCCcc----ceeEEE----EcCCCCEEEEEeCCCCEEEEeccCCceEEE
Q 004914 61 AVAERMIALGTHAGTVHILDFL-GN-QVKEFPAHTA----AVNDLS----FDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~~-~~-~~~~~~~h~~----~V~~l~----~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
+++++.+++|+.||.|++||+. +. .+..+..|.+ .|.+++ |+|+++++++++.||.|++||+.++.....
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence 5788999999999999999994 43 4677766554 899998 789999999999999999999999887666
Q ss_pred eCCC-CeeEEEeCC---CCCCCCCCEEEEecCCCeEEEEecccCCccceEe-----ccCCCCeEEEEEeC--C-EEEEE-
Q 004914 131 DYHR-PMKAISLDP---DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-----HSGEGPVHVVKWRT--S-LIAWA- 197 (724)
Q Consensus 131 ~~~~-~v~~v~~~p---~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-----~~~~~~V~~l~~~~--~-~la~~- 197 (724)
..+. .|.+++|+| + +..+++|+.||.|++|+.. .+.....+ ..|.+.|++++|++ . +++++
T Consensus 206 ~~~~~~v~~~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDIS-----MNKLVATSLEGKFHVFDMR-TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp EECSSCEEEEEESCSSSS-----CCEEEEEESTTEEEEEEEE-EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred cCCCCceEEEEcCCCCCC-----CCEEEEECCCCeEEEEeCc-CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 6666 999999999 7 7999999999999999875 33333333 37899999999993 4 66666
Q ss_pred cCCcEEEEEcCCCce-------------------EEEecCCCCCCCCCCCCCceee-cCCCeEE-EE-eCCeEEEEEEee
Q 004914 198 NDAGVKVYDAANDQR-------------------ITFIERPRGSPRPELLLPHLVW-QDDTLLV-IG-WGTYIKIASIKT 255 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~-------------------~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~-~g-~d~~i~vw~~~~ 255 (724)
.|+.|++||++++.. +..+.. +...+.+++| +++..++ +| .|+.|++|++.+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL------STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCcEEEeecCCCcccccccCCCCccccccccceeecccc------CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 799999999986532 233322 3345778999 6777776 56 899999999976
Q ss_pred C
Q 004914 256 N 256 (724)
Q Consensus 256 ~ 256 (724)
.
T Consensus 354 ~ 354 (357)
T 3i2n_A 354 L 354 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-17 Score=182.35 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=165.0
Q ss_pred EEEecCCEE-EEEeCCCeEEEEecC---CCeeEEEc--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE----
Q 004914 59 CVAVAERMI-ALGTHAGTVHILDFL---GNQVKEFP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---- 128 (724)
Q Consensus 59 ~~s~~~~~l-a~g~~dg~I~i~d~~---~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---- 128 (724)
+|+|++++| ++|+.||.|++||+. +..+..+. .|...|++++|+|+|++|++|+.||.|++|++.++...
T Consensus 109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~ 188 (450)
T 2vdu_B 109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ 188 (450)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCC
T ss_pred EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccc
Confidence 478889986 899999999999986 44556665 57789999999999999999999999999999875433
Q ss_pred -EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEe-CCEEEEE-cCCcEE
Q 004914 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR-TSLIAWA-NDAGVK 203 (724)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~-~~~la~~-~d~~i~ 203 (724)
.+..|. .|++++|+|+. .+++++++|+.||.|++|+.. .+..... +.+|.++|.+++|+ +.+++++ .|+.|+
T Consensus 189 ~~~~~h~~~v~~~~~sp~~--~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~ 265 (450)
T 2vdu_B 189 EPILGHVSMLTDVHLIKDS--DGHQFIITSDRDEHIKISHYP-QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIF 265 (450)
T ss_dssp CCSEECSSCEEEEEEEECT--TSCEEEEEEETTSCEEEEEES-CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEE
T ss_pred eeeecccCceEEEEEcCCC--CCCcEEEEEcCCCcEEEEECC-CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEE
Confidence 556677 99999999961 114799999999999999975 3444444 56789999999997 7788777 699999
Q ss_pred EEEcCCCceEEEecCCCC-------------------CCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEE--eeCCCC
Q 004914 204 VYDAANDQRITFIERPRG-------------------SPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASI--KTNQSN 259 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~-------------------~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~--~~~~~~ 259 (724)
+||+.+++.+..+..+.. .......+..+.| +++..++++ .++.|++|++ .++.
T Consensus 266 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~-- 343 (450)
T 2vdu_B 266 AWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG-- 343 (450)
T ss_dssp EEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT--
T ss_pred EEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC--
Confidence 999999998877653210 0012233556777 667777777 5889999999 2211
Q ss_pred CCCCccccCCCeEEEEEEEeeeceEEEeeeecCCceEEEE
Q 004914 260 VANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLA 299 (724)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~ 299 (724)
.+.....+.....+.++++..+.+++..
T Consensus 344 ------------~l~~~~~~~~~~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 344 ------------DLALKQIITFPYNVISLSAHNDEFQVTL 371 (450)
T ss_dssp ------------CEEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred ------------ceeeccEeccCCceEEEEecCCcEEEEE
Confidence 1123333444455666777665544433
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.4e-18 Score=186.05 Aligned_cols=198 Identities=11% Similarity=0.143 Sum_probs=154.4
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec----CCCeeEEEcC------------CccceeEEE--EcCCCCEEEEEeCC
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF----LGNQVKEFPA------------HTAAVNDLS--FDVDGEYVGSCSDD 114 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~----~~~~~~~~~~------------h~~~V~~l~--~s~~g~~l~s~~~D 114 (724)
..|.+ |+++++.|++|+.||+|++||+ .+........ +...+.++. +++++.++++|+.|
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 44655 6668899999999999999998 3444333222 445666666 56889999999999
Q ss_pred CCEEEEeccCCce-EEEeC--CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEE
Q 004914 115 GSVVINSLFTDEK-MKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKW 189 (724)
Q Consensus 115 g~v~iwd~~~~~~-~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~ 189 (724)
|.|++||+.+++. ..+.. |. .|++++|+|+ +..+++|+.||.|++|+.+ .+.....+. .+..+|++++|
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-----CCVLILGTTRGIIDIWDIR-FNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-----SCEEEEEETTSCEEEEETT-TTEEEEEEBCTTCEEEEEEEE
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-----CCEEEEEcCCCeEEEEEcC-CccEEEEEecCCCCceEEEEe
Confidence 9999999998665 45665 55 9999999999 8999999999999999986 355555554 67789999988
Q ss_pred eC------CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCC--------------------CCCCCCceeecCCCeEEE
Q 004914 190 RT------SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR--------------------PELLLPHLVWQDDTLLVI 242 (724)
Q Consensus 190 ~~------~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~--------------------~~~~~~~l~~~~~~~l~~ 242 (724)
++ .+++++ .|+.|++||+++++.+..+..+...+. +...+.+++|.++..|++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEe
Confidence 73 477777 689999999999998887765532211 444577788887788888
Q ss_pred E-eCCeEEEEEEeeCCC
Q 004914 243 G-WGTYIKIASIKTNQS 258 (724)
Q Consensus 243 g-~d~~i~vw~~~~~~~ 258 (724)
| .|+.|++||+.++..
T Consensus 346 ~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 346 DEATSSIVMFSLNELSS 362 (437)
T ss_dssp EGGGTEEEEEETTCGGG
T ss_pred cCCCCeEEEEECCCccc
Confidence 8 899999999987653
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-17 Score=180.34 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=146.6
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CCC---eeEEEc-------------------------------------------
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LGN---QVKEFP------------------------------------------- 90 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~~---~~~~~~------------------------------------------- 90 (724)
.+++++|+++++ +.++.|++||. +|. .+..+.
T Consensus 10 v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (450)
T 2vdu_B 10 LLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA 88 (450)
T ss_dssp EEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred EEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence 358889996654 46889999998 676 444443
Q ss_pred -----------CCccceeEEEEcCCCCEE-EEEeCCCCEEEEecc--CCceE-EEe--CCC-CeeEEEeCCCCCCCCCCE
Q 004914 91 -----------AHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLF--TDEKM-KFD--YHR-PMKAISLDPDYTRKMSRR 152 (724)
Q Consensus 91 -----------~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~--~~~~~-~~~--~~~-~v~~v~~~p~~~~~~~~~ 152 (724)
+|.+.|++++|+|+|++| ++|+.||.|++||+. ++... .+. .+. .|++++|+|+ +..
T Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~ 163 (450)
T 2vdu_B 89 AKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED-----DTT 163 (450)
T ss_dssp -----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT-----SSE
T ss_pred ccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC-----CCE
Confidence 234479999999999996 899999999999998 65543 343 444 8999999999 899
Q ss_pred EEEecCCCeEEEEecccCCccc----eEeccCCCCeEEEEEeCC-----EEEEE-cCCcEEEEEcCCCceEEEecCCCCC
Q 004914 153 FVAGGLAGHLYLNSKKWLGYRD----QVLHSGEGPVHVVKWRTS-----LIAWA-NDAGVKVYDAANDQRITFIERPRGS 222 (724)
Q Consensus 153 l~~g~~dg~v~l~~~~~~~~~~----~~l~~~~~~V~~l~~~~~-----~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~ 222 (724)
+++|+.+|.+.+|+.. .+... ..+.+|.+.|++++|++. +++++ .|+.|++||+.+++.+..+..
T Consensus 164 l~~~~~~g~v~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---- 238 (450)
T 2vdu_B 164 VIIADKFGDVYSIDIN-SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF---- 238 (450)
T ss_dssp EEEEETTSEEEEEETT-SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC----
T ss_pred EEEEeCCCcEEEEecC-CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec----
Confidence 9999999999999873 44433 266778999999999943 66666 799999999999887765321
Q ss_pred CCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 223 PRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 223 ~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.|...+.+++|+++..|++| .|+.|++||+.++.
T Consensus 239 -~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 239 -GHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp -CCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCC
T ss_pred -CCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCc
Confidence 23345778888877888888 89999999987754
No 101
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.79 E-value=1.1e-17 Score=196.97 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=157.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC-ce-EEEeCCC-
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EK-MKFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~-~~~~~~~- 134 (724)
+|+|++++|++|+.||.|++||. ++..+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.++ .. ..+..|.
T Consensus 62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 48899999999999999999999 67778889999999999999999999999999999999999886 33 3567777
Q ss_pred CeeEEEeCC-CCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-CCCCeEEEEEe----CCEEEEE-cCCcEEEEEc
Q 004914 135 PMKAISLDP-DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWR----TSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 135 ~v~~v~~~p-~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~----~~~la~~-~d~~i~i~d~ 207 (724)
+|.+++|+| + +..+++|+.||.|++|+.. .+.....+.. +..++.+++|+ +.+++++ .|+.|++||+
T Consensus 142 ~v~~~~~~p~~-----~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 142 FVMCVAFNPKD-----PSTFASGCLDRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp CEEEEEEETTE-----EEEEEEEETTSEEEEEETT-CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred cEEEEEEEcCC-----CCEEEEEeCCCeEEEEECC-CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999999999 6 7899999999999999875 3444444444 44889999996 4677777 6999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.+++.+..+..+. ..+.+++| +++..+++| .|+.|++||+.++.
T Consensus 216 ~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 216 QTKSCVATLEGHM------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp TTTEEEEEEECCS------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCcEEEEEcCCC------CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999888776543 24677888 677788888 78999999987643
No 102
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-18 Score=185.08 Aligned_cols=190 Identities=12% Similarity=0.201 Sum_probs=153.7
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecC-CC------ee---EEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCc
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFL-GN------QV---KEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~-~~------~~---~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
+|+|+ ++++++|+.||.|++||+. +. .. .....|...|++++|+|+ +.++++++.||.|++||+.++.
T Consensus 120 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 199 (416)
T 2pm9_A 120 KFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK 199 (416)
T ss_dssp EECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred EEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence 46776 8899999999999999994 33 22 234679999999999999 7899999999999999999876
Q ss_pred eE-EEeCC------C-CeeEEEeCCCCCCCCCCEEEEecCCC---eEEEEecccCCccceEec-cCCCCeEEEEEe---C
Q 004914 127 KM-KFDYH------R-PMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR---T 191 (724)
Q Consensus 127 ~~-~~~~~------~-~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~---~ 191 (724)
.. .+..+ . +|.+++|+|+ +...+++++.+| .|++|+.+-.......+. .|.+.|++++|+ +
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 275 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPK----NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE 275 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSS----CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS
T ss_pred cceEEeccccccccCCceEEEEECCC----CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC
Confidence 54 45443 5 8999999998 236899999998 999999863335566666 789999999997 4
Q ss_pred CEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCC-CeEEEE-eCCeEEEEEEeeCCC
Q 004914 192 SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDD-TLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~-~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.+++++ .|+.|++||+.+++.+..+..+. ..+.+++| +++ ..++++ .|+.|++|++.+...
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESAEQLSQFPARG------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SCEEEEESSSEEEEECSSSCCEEEEEECSS------SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CeEEEEeCCCCEEEeeCCCCccceeecCCC------CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 666666 79999999999999888876543 34678889 555 688888 899999999987653
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.3e-18 Score=199.94 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=122.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeE---EE----c-----CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVK---EF----P-----AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~---~~----~-----~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
+++|+++++++|+.||+|++||..+..+. .+ . +|...|++++|+|+|++||+|+.||+|++|++.+++
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 57889999999999999999999443221 11 1 799999999999999999999999999999998652
Q ss_pred ----------------------------------------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC
Q 004914 127 ----------------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 127 ----------------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
...+..|. +|++++|+|+ | ++|+|+.|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd-----G-~lAsgs~D 595 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI-----G-FVGIAYAA 595 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-----S-EEEEEETT
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC-----c-EEEEEeCC
Confidence 33566788 9999999999 7 99999999
Q ss_pred CeEEEEecccCCccc-----eEec-cCCCCeEEEEEe-----C-----CEEEEE-cCCcEEEEEc---CCCceEEEecC
Q 004914 160 GHLYLNSKKWLGYRD-----QVLH-SGEGPVHVVKWR-----T-----SLIAWA-NDAGVKVYDA---ANDQRITFIER 218 (724)
Q Consensus 160 g~v~l~~~~~~~~~~-----~~l~-~~~~~V~~l~~~-----~-----~~la~~-~d~~i~i~d~---~~~~~~~~i~~ 218 (724)
|+|++|+.. .+... ..+. +|.+.|++++|+ + .+++++ .|++|++||+ .+|+....+..
T Consensus 596 ~tv~lwd~~-~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 596 GSLMLIDRR-GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp SEEEEEETT-TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred CcEEEEECC-CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecC
Confidence 999999864 22111 1232 788899999999 4 477766 7999999999 67766655433
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=2.6e-18 Score=184.24 Aligned_cols=195 Identities=13% Similarity=0.095 Sum_probs=131.0
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCe------eEEEcCCccceeEEEEcC--------CCCEEEEEeCCCCEEEEecc
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQ------VKEFPAHTAAVNDLSFDV--------DGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~------~~~~~~h~~~V~~l~~s~--------~g~~l~s~~~Dg~v~iwd~~ 123 (724)
.++.+++.++|+|+.|++|++||..... +..+.+|.+.|++++|+| +|++|+|||.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 3456678899999999999999994432 223578999999999998 88999999999999999998
Q ss_pred CCc-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-------------------------eE
Q 004914 124 TDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-------------------------QV 176 (724)
Q Consensus 124 ~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-------------------------~~ 176 (724)
++. ...+..+. +|.+++|+|+ ++..+++|+.||+|++|+..- +... ..
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~d~~v~~wd~~t-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPS----NPNQLIVGERNGNIRIFDWTL-NLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETT----EEEEEEEEETTSEEEEEETTC-CC----------CSCCCSEEEESGGGC----
T ss_pred CCceeeeecCCCCCcEEEEECCC----CCceEEecCCCCEEEEEECCC-CcccccccccCCcccceEEecccccceeeee
Confidence 754 44555555 9999999998 235899999999999998642 1110 11
Q ss_pred eccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCC-------------CCCCCCceee-c-CC
Q 004914 177 LHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR-------------PELLLPHLVW-Q-DD 237 (724)
Q Consensus 177 l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~-------------~~~~~~~l~~-~-~~ 237 (724)
..+|...|.++.|. |..++++ .|+.+++||+.+++....+..+..... .........+ . ++
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 13466788899997 5677776 799999999988765554433221111 1111122222 2 34
Q ss_pred CeEEEE-eCCeEEEEEEeeCC
Q 004914 238 TLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 238 ~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.++++| .|+.|++||+.++.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTT
T ss_pred EEEEEECCCCEEEEEECCCCc
Confidence 455666 78999999987654
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.8e-18 Score=185.57 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=139.6
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC------------------------------CCeeEEEc-CCccceeEEEEcCCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL------------------------------GNQVKEFP-AHTAAVNDLSFDVDGE 106 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~------------------------------~~~~~~~~-~h~~~V~~l~~s~~g~ 106 (724)
.+|+|||+++|+++.|++|+ |.. ++....+. .|...|.+++|+|+|+
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~ 98 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD 98 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS
T ss_pred EEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC
Confidence 47999999999999999994 221 11011122 4678899999999999
Q ss_pred EEEEEeCCCCEEEEeccCCceEEEeCCC------CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc-------c
Q 004914 107 YVGSCSDDGSVVINSLFTDEKMKFDYHR------PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY-------R 173 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~~~~~~~~------~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~-------~ 173 (724)
.||+++.||.|++||..+ .+..+. |. .|.+++|+|+ |+.+++|+.||+|++|+.. .+. .
T Consensus 99 ~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPD-----G~~LAsgs~DGtVkIWd~~-~~~l~~~~~i~ 170 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPI-----ESSIVVGNEDGELQFFSIR-KNSENTPEFYF 170 (588)
T ss_dssp CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSS-----SSCEEEEETTSEEEEEECC-CCTTTCCCCEE
T ss_pred EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCC-----CCEEEEEcCCCEEEEEECC-CCcccccccee
Confidence 999999999999999644 333445 44 3999999999 9999999999999999975 332 1
Q ss_pred ceEe----ccCCCCeEEEEEeC-CEEEEEcCCcEEEEEcCCCce---EEEecCCCCCCCCCCCCCceeecCCCeEEEEeC
Q 004914 174 DQVL----HSGEGPVHVVKWRT-SLIAWANDAGVKVYDAANDQR---ITFIERPRGSPRPELLLPHLVWQDDTLLVIGWG 245 (724)
Q Consensus 174 ~~~l----~~~~~~V~~l~~~~-~~la~~~d~~i~i~d~~~~~~---~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d 245 (724)
..++ .+|.+.|.+++|++ .+++++.|++|++|++.++.. ...+.. .+...+.+++|+ +..++++.+
T Consensus 171 l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~-----~h~~~V~svaFs-g~~LASa~~ 244 (588)
T 2j04_A 171 ESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQN-----ASRRKITDLKIV-DYKVVLTCP 244 (588)
T ss_dssp EEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEEC-----CCSSCCCCEEEE-TTEEEEECS
T ss_pred eeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecc-----cccCcEEEEEEE-CCEEEEEeC
Confidence 3454 45778999999992 255555899999999987763 233321 123357889998 688998888
Q ss_pred CeEEEEEEeeCC
Q 004914 246 TYIKIASIKTNQ 257 (724)
Q Consensus 246 ~~i~vw~~~~~~ 257 (724)
+.|++|++.++.
T Consensus 245 ~tIkLWd~~~~~ 256 (588)
T 2j04_A 245 GYVHKIDLKNYS 256 (588)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEECCCCe
Confidence 999999987654
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.1e-18 Score=183.46 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=147.7
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcC--CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEe-CCC-C
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD-YHR-P 135 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~-~~~-~ 135 (724)
++++++++|+.||.|++||+ ++..+..+.+ |.+.|++++|+|++++|++|+.||.|++||++++... .+. .+. +
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 259 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP 259 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence 56889999999999999999 6677788887 8999999999999999999999999999999987765 344 555 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec------------------------c--CCCCeEEEEE
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH------------------------S--GEGPVHVVKW 189 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~------------------------~--~~~~V~~l~~ 189 (724)
|++++|+|.+... +..+++|+.||.|++|+.. .+.....+. + |.+.|++++|
T Consensus 260 v~~~~~~~~~s~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 260 ITHVEVCQFYGKN-SVIVVGGSSKTFLTIWNFV-KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEECTTTCTT-EEEEEEESTTEEEEEEETT-TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred eEEEEeccccCCC-ccEEEEEcCCCcEEEEEcC-CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 9999888765433 6799999999999999875 333222222 2 5567899999
Q ss_pred e-CCEEEEE-cCCcEEEEEcCCCceEEEecCCCC-------------------------------CCCCCCCCCceee-c
Q 004914 190 R-TSLIAWA-NDAGVKVYDAANDQRITFIERPRG-------------------------------SPRPELLLPHLVW-Q 235 (724)
Q Consensus 190 ~-~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~-------------------------------~~~~~~~~~~l~~-~ 235 (724)
+ +.+++++ .|+.|++||+.+++....+..+.. ...|...+.++.| .
T Consensus 338 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 338 SNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp ETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred CCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 9 5677777 699999999999887776654310 1124556777888 3
Q ss_pred C--CCeEEEE-eCCeEEEEE
Q 004914 236 D--DTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 236 ~--~~~l~~g-~d~~i~vw~ 252 (724)
+ +..|++| .||.|++|+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 4 6688888 899999994
No 107
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.78 E-value=2.2e-17 Score=187.64 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=154.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-C----CeeEEEcCCccc-eeEEEEcC--CCCEEEEEeCCCCEEEEeccCC-----
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-G----NQVKEFPAHTAA-VNDLSFDV--DGEYVGSCSDDGSVVINSLFTD----- 125 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~----~~~~~~~~h~~~-V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~----- 125 (724)
+|+|+++++++|+ +|.|++|+.. + .....+.+|.+. |++++|+| +|++|++|+.||.|++||+.++
T Consensus 25 ~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 25 SYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred EECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence 7999999999998 8899999994 5 567889999999 99999999 9999999999999999999744
Q ss_pred ---c-eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC----CeEEEEecccCCccceEeccCCCCeEEEEEe--CC-E
Q 004914 126 ---E-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA----GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-L 193 (724)
Q Consensus 126 ---~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d----g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~ 193 (724)
. ...+..+. +|.+++|+|+ ++.+++++.+ +.+.+|+ .+.....+..|.+.|++++|+ +. +
T Consensus 104 ~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~v~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 104 VEVNVKSEFQVLAGPISDISWDFE-----GRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTT-----SSEEEEEECCSSCSEEEEETT---TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred ccccccchhhcccccEEEEEEeCC-----CCEEEEeccCCCCccEEEEEE---CCCcceeeecCCccEEEEEECCCCCcE
Confidence 2 23566677 9999999999 8999999887 6888876 245667778899999999999 33 5
Q ss_pred EEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC-CCeEEEE-eCCeEEEEEEeeCC
Q 004914 194 IAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD-DTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~-~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++++ .|+.|++||..+++.+..+..+... ...+.++.| ++ +..+++| .++.|++||+.++.
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQ---GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCT---TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCC---CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 6655 7999999999999888877654320 114678888 56 7888888 89999999987654
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.5e-18 Score=197.40 Aligned_cols=202 Identities=19% Similarity=0.195 Sum_probs=154.7
Q ss_pred CceEE--EEec--CCEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEEEEeccCC
Q 004914 55 DAASC--VAVA--ERMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 55 ~~i~~--~s~~--~~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
+.|++ |+++ ++++++|+.||.|++||..+. .+..+.+|...|++++|+|+ |+.+++|+.||.|++||+.++
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 44655 5565 899999999999999999443 46778889999999999999 999999999999999999885
Q ss_pred ---ceEEEeCCC-CeeEEEeCCCCC--------CCCCCEEEEecCCCeEEEEecccCC---ccceEeccCCCCeEEEEEe
Q 004914 126 ---EKMKFDYHR-PMKAISLDPDYT--------RKMSRRFVAGGLAGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR 190 (724)
Q Consensus 126 ---~~~~~~~~~-~v~~v~~~p~~~--------~~~~~~l~~g~~dg~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~ 190 (724)
....+..|. +|.+++|+|... ..++..+++|+.||.|++|+.+... .....+.+|.++|++++|+
T Consensus 134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 234566777 999999999300 0016899999999999999876322 2334567789999999999
Q ss_pred -----CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 191 -----TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 191 -----~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.+++++ .|+.|++||+.++........ .....+...+.+++| +++..+++| .||.|++|++.++.
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB-SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE-eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 3466666 799999999997642211000 112234456778899 688888888 99999999998654
No 109
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.77 E-value=3.1e-17 Score=186.35 Aligned_cols=190 Identities=15% Similarity=0.208 Sum_probs=154.4
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEec-CC--------CeeEEEcCCccceeEEEEcCCCCEEEEEeCC----CCEEEEecc
Q 004914 59 CVAV--AERMIALGTHAGTVHILDF-LG--------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLF 123 (724)
Q Consensus 59 ~~s~--~~~~la~g~~dg~I~i~d~-~~--------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~ 123 (724)
+|+| ++++|++|+.||.|++||. ++ .....+..|..+|.+++|+|+|+++++++.+ +.|++|| .
T Consensus 71 ~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~ 149 (615)
T 1pgu_A 71 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-S 149 (615)
T ss_dssp EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-T
T ss_pred EECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-C
Confidence 4888 8999999999999999999 33 4457788899999999999999999999988 7899998 3
Q ss_pred CCceEEEeCCC-CeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccceEeccCCC---CeEEEEEe---CCEEE
Q 004914 124 TDEKMKFDYHR-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG---PVHVVKWR---TSLIA 195 (724)
Q Consensus 124 ~~~~~~~~~~~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~---~V~~l~~~---~~~la 195 (724)
......+..|. .|++++|+|+ +. .+++|+.||.+++|+.. .+.....+..|.+ +|++++|+ +++++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQS-----RPMRSMTVGDDGSVVFYQGP-PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSS-----SSCEEEEEETTTEEEEEETT-TBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred CCcceeeecCCccEEEEEECCC-----CCcEEEEEeCCCcEEEEeCC-CcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 34455677788 9999999999 55 89999999999999875 4556667777888 99999998 45777
Q ss_pred EE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 196 WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 196 ~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++ .|+.|++||+.+++.+..+..+ ...+...+.++.|.++..++++ .|+.|++||++++.
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBT--TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEeCCCeEEEEECCCCCEeEEeccc--ccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCc
Confidence 66 7999999999999988876210 0022335677888777778877 78999999987643
No 110
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.77 E-value=1.2e-16 Score=172.82 Aligned_cols=189 Identities=17% Similarity=0.287 Sum_probs=153.0
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc--eEE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE--KMK 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~--~~~ 129 (724)
+.|+| |+++|++||+|+.||+|++||. +++.+..+.+|...|.+++++ +..+++|+.|+.+++||..... +..
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE
Confidence 34665 7789999999999999999999 567788899999999988775 7799999999999999998733 456
Q ss_pred EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC---ccceEeccCCCCeEEEEEe---CCEEEEE---cC
Q 004914 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR---TSLIAWA---ND 199 (724)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~---~~~~~l~~~~~~V~~l~~~---~~~la~~---~d 199 (724)
+..|. .+.++.|+|+ +..+++++.||.+++|+..... ........+.+.|.+++|+ +.+++++ .|
T Consensus 226 ~~~h~~~~~~~~~~~~-----g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPD-----GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp EECCSSCEEEEEECTT-----SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred ecccccceeeeeecCC-----CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 78888 9999999999 8999999999999999875221 2344566788999999998 4666553 48
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE---eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG---WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g---~d~~i~vw~~~~~~ 257 (724)
+.|++||+.+++....+..+. .+.++.| +++..++++ .|+.|+|||+.++.
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~~-------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAHS-------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CEEEEEETTTTEEEEEEECSS-------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CEEEEEeCCccccceeecccc-------ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 999999999999888776543 3556777 666666665 57899999987643
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.76 E-value=4.9e-17 Score=170.21 Aligned_cols=190 Identities=9% Similarity=0.001 Sum_probs=151.1
Q ss_pred EEEecCC-EEEEEeCCCeEEEEec-CCCeeEEEcC--CccceeEEEEcCCCCEEEEEeCCCCEEEEeccC---------C
Q 004914 59 CVAVAER-MIALGTHAGTVHILDF-LGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT---------D 125 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~-~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~---------~ 125 (724)
+|+++++ ++++|+.+|.|++||+ .+.....+.+ |...|++++|+| ++.+++++.||.|++||+.+ +
T Consensus 63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp EEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred EECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC
Confidence 4788999 9999999999999999 8877788889 999999999999 99999999999999999986 5
Q ss_pred ceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc--cceEeccCCCCeEEEEEeC---CEEEEE-
Q 004914 126 EKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGPVHVVKWRT---SLIAWA- 197 (724)
Q Consensus 126 ~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~l~~~~~~V~~l~~~~---~~la~~- 197 (724)
+.. .+. +. .|.+++|+|+ + +++|+.+|.+++|+..-.+. .......+..+|.+++|++ .+++++
T Consensus 142 ~~~~~~~-~~~~v~~~~~~~~-----~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 142 LNSNNTK-VKNKIFTMDTNSS-----R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SCSSSSS-SCCCEEEEEECSS-----E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred CeeeEEe-eCCceEEEEecCC-----c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 433 334 55 9999999998 3 99999999999999863122 2233445788999999974 667666
Q ss_pred cCCcEEEEEcCCC------ceEEEecCCCCC---CCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 198 NDAGVKVYDAAND------QRITFIERPRGS---PRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 198 ~d~~i~i~d~~~~------~~~~~i~~~~~~---~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
.|+.+++|++..+ +....+..+... ..+...+.+++| +++..|++| .++.|++||+.++.
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 7999999999876 666665554321 122335778888 678888888 88999999987643
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.76 E-value=1.3e-17 Score=205.88 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=163.5
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC-C
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-P 135 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~ 135 (724)
.+++|+++++++|+.+|.|++|+. ++.....+.+|.+.|++++|+|+|+++++++.||.|++||+.++.......+. .
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCc
Confidence 357889999999999999999999 56667888899999999999999999999999999999999998887777777 9
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCce
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~ 212 (724)
|.+++|+|+ ..+++++.||.+++|+.. .+.....+..|.++|++++|+ +.+++++ .|+.|++||+.+++.
T Consensus 1047 v~~~~~~~~------~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~ 1119 (1249)
T 3sfz_A 1047 VKDFRLLQD------SRLLSWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119 (1249)
T ss_dssp EEEEEECSS------SEEEEEESSSEEEEEETT-TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC
T ss_pred EEEEEEcCC------CcEEEEECCCcEEEEECC-CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce
Confidence 999999998 678999999999999986 567777888899999999999 5666666 799999999998887
Q ss_pred EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCCC
Q 004914 213 ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (724)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (724)
+..+..+ ...+.+++| +++..+++| .||.|++||+.++...
T Consensus 1120 ~~~l~~h------~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1120 LHELKGH------NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp SBCCCCC------SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred eeeeccC------CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 6654433 345778889 688889988 8899999999876543
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.75 E-value=1.7e-16 Score=170.21 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=144.6
Q ss_pred CceEE--EEe-cCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCC---CCEEEEEeCCCCEEEEeccCCce
Q 004914 55 DAASC--VAV-AERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVD---GEYVGSCSDDGSVVINSLFTDEK 127 (724)
Q Consensus 55 ~~i~~--~s~-~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~---g~~l~s~~~Dg~v~iwd~~~~~~ 127 (724)
..|.+ |++ +++++++|+.||.|++||..... ...+ .+...+.++.|++. +.++++++.||.|++||+.++..
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 44555 566 66799999999999999995544 4444 47788999999985 44999999999999999998654
Q ss_pred -EEEeCCC-CeeEEEeCCCCCCCCCC-EEEEecCCCeEEEEecccCCccceEe---------------ccCCCCeEEEEE
Q 004914 128 -MKFDYHR-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVL---------------HSGEGPVHVVKW 189 (724)
Q Consensus 128 -~~~~~~~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~l---------------~~~~~~V~~l~~ 189 (724)
..+..|. +|.+++|+|+ +. .+++|+.||.|++|+.+-.......+ ..|.++|.+++|
T Consensus 179 ~~~~~~~~~~v~~~~~~~~-----~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPR-----YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CEEECCCCSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred eeeecCCCCcEEEEEECCC-----CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 5677777 9999999999 55 69999999999999875322222222 457889999999
Q ss_pred e--CCEEEEE-cCCcEEEEEcCCCceEEEecCCC------------------------------------C-----CCCC
Q 004914 190 R--TSLIAWA-NDAGVKVYDAANDQRITFIERPR------------------------------------G-----SPRP 225 (724)
Q Consensus 190 ~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~------------------------------------~-----~~~~ 225 (724)
+ +.+++++ .|+.|++||+.+++......... + ...+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 8 5677766 79999999998765432211110 0 0123
Q ss_pred CCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 226 ELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 226 ~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
...+.+++| +++..|++| .|+.|++|++.+..
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 345666777 566777777 77888888887654
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-17 Score=174.37 Aligned_cols=183 Identities=9% Similarity=0.052 Sum_probs=144.0
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc---------CCc-eE
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF---------TDE-KM 128 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~---------~~~-~~ 128 (724)
+.++++.+++|+.||+|++||. +++.+..+. ...|.++.|+|+ +++++.||+|++|+.. ++. +.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 4467889999999999999999 566666665 567888899988 9999999999999765 344 22
Q ss_pred EEe-CCC-CeeEEEeCC--CCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE-cCC
Q 004914 129 KFD-YHR-PMKAISLDP--DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA-NDA 200 (724)
Q Consensus 129 ~~~-~~~-~v~~v~~~p--~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~-~d~ 200 (724)
.+. .|. +|.+++|+| + ++++++|+.||.+++|+.. .+....... .+...|++++|+ |.+++++ .|+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~-----~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVN-----TEYFIWADNRGTIGFQSYE-DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp EEECCCSSCEEEEECCC--------CCEEEEEETTCCEEEEESS-SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred EeecCCCCCEEEEEcCCCCC-----CCEEEEEeCCCcEEEEECC-CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 333 444 899999999 7 7999999999999999986 444444332 345679999999 6888887 799
Q ss_pred cEEEEEcCCCceE-EEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCCC
Q 004914 201 GVKVYDAANDQRI-TFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQS 258 (724)
Q Consensus 201 ~i~i~d~~~~~~~-~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~~ 258 (724)
.|++||+++++.+ ..+.. .|...+.+++| +++..|++|.++.|++||+++...
T Consensus 193 ~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG 247 (343)
T ss_dssp CEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred EEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence 9999999998876 55443 13446888999 688899998778999999987653
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.74 E-value=3.6e-17 Score=175.36 Aligned_cols=180 Identities=9% Similarity=0.004 Sum_probs=130.1
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceE------------
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM------------ 128 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~------------ 128 (724)
++++||+|+.|++|++||+ ++..+..+..|..+|.+++|+|++. +|++|+.||+|++||+.+++..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 7889999999999999998 5666777788999999999999875 7999999999999999875421
Q ss_pred --------------EEeCCC-CeeEEEeC-CCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCe--------
Q 004914 129 --------------KFDYHR-PMKAISLD-PDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV-------- 184 (724)
Q Consensus 129 --------------~~~~~~-~v~~v~~~-p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V-------- 184 (724)
....+. .+.+++|+ |+ +..+++++.|+.+++|+... +.....+..+.+.+
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d-----g~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSD-----GSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTT-----TCEEEEECTTSEEEEEEC--------------------CCSCS
T ss_pred eEEecccccceeeeecccccccceeeeeecCC-----CCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccc
Confidence 112345 78899986 56 89999999999999998652 22222222222111
Q ss_pred ----------EEEEEe----CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeE
Q 004914 185 ----------HVVKWR----TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYI 248 (724)
Q Consensus 185 ----------~~l~~~----~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i 248 (724)
.+..|. +.+++++ .|+.|++||+.++........+. ..+.+++| ++++.|+++.++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~------~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG------MPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS------SCEEEEEECTTSSEEEEEESSEE
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC------CcEEEEEEcCCCCEEEEEeCCCe
Confidence 122333 2356666 58999999999888766543332 34778999 79999999988889
Q ss_pred EEEEEe
Q 004914 249 KIASIK 254 (724)
Q Consensus 249 ~vw~~~ 254 (724)
.+|++.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 898874
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.72 E-value=5e-16 Score=163.94 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=143.5
Q ss_pred ceEEEEecCCEE-EEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCC----------------------------
Q 004914 56 AASCVAVAERMI-ALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDG---------------------------- 105 (724)
Q Consensus 56 ~i~~~s~~~~~l-a~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g---------------------------- 105 (724)
.+.++.++++.+ ++|+.+++|++||. ++..+..+. |...|.+++|++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 62 SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence 345677777776 56778899999998 566666665 56688888887642
Q ss_pred -------CEEEE--EeCCCCEEEEeccCCc-----------------eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC
Q 004914 106 -------EYVGS--CSDDGSVVINSLFTDE-----------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL 158 (724)
Q Consensus 106 -------~~l~s--~~~Dg~v~iwd~~~~~-----------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~ 158 (724)
.+++. |+.||.|++||+.++. ...+..|. +|++++|+|+ ++++++|+.
T Consensus 141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-----g~~l~s~s~ 215 (355)
T 3vu4_A 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-----SDMVATCSQ 215 (355)
T ss_dssp EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-----SSEEEEEET
T ss_pred ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-----CCEEEEEeC
Confidence 23444 5789999999998754 56788888 9999999999 899999999
Q ss_pred CCe-EEEEecccCCccceEec-c-CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEE--EecC-----CCC----
Q 004914 159 AGH-LYLNSKKWLGYRDQVLH-S-GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRIT--FIER-----PRG---- 221 (724)
Q Consensus 159 dg~-v~l~~~~~~~~~~~~l~-~-~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~--~i~~-----~~~---- 221 (724)
||+ |++|+.. .+.....+. + |.++|.+++|+ |.+++++ .|+.|++||+..+.... .+.. ...
T Consensus 216 d~~~v~iwd~~-~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 216 DGTIIRVFKTE-DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp TCSEEEEEETT-TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred CCCEEEEEECC-CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 998 9999986 566666776 4 89999999999 6777776 79999999997653211 1100 000
Q ss_pred ------CCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 222 ------SPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 222 ------~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
........+.++| +++..++++ .||.+++|++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0001111356788 677788888 899999999987653
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.71 E-value=2.9e-16 Score=163.97 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=125.4
Q ss_pred CceEE--EEe--cCCEEEEEeCCCeEEEEecCC----------CeeEEEcCCccceeEEEEcCC--CCEEEEEeCCCCEE
Q 004914 55 DAASC--VAV--AERMIALGTHAGTVHILDFLG----------NQVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVV 118 (724)
Q Consensus 55 ~~i~~--~s~--~~~~la~g~~dg~I~i~d~~~----------~~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~ 118 (724)
..|++ |++ ++++|++|+.||.|++||... ..+..+.+|.+.|++++|+|+ +.++++++.||.|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 44555 556 589999999999999999954 336778899999999999999 99999999999999
Q ss_pred EEeccCCc-------------------------------------------------------------eEEEeCCC-Ce
Q 004914 119 INSLFTDE-------------------------------------------------------------KMKFDYHR-PM 136 (724)
Q Consensus 119 iwd~~~~~-------------------------------------------------------------~~~~~~~~-~v 136 (724)
+||+.++. ...+..|. +|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 99986532 12234566 99
Q ss_pred eEEEeCCCCCCCCC----CEEEEecCCCeEEEEecccC------------------------------------------
Q 004914 137 KAISLDPDYTRKMS----RRFVAGGLAGHLYLNSKKWL------------------------------------------ 170 (724)
Q Consensus 137 ~~v~~~p~~~~~~~----~~l~~g~~dg~v~l~~~~~~------------------------------------------ 170 (724)
++++|+|+ + ..+++|+.||.|++|+....
T Consensus 218 ~~~~~~p~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 218 RSISWAPS-----IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp EEEEECCC-----SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred eEEEECCC-----CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 99999999 5 79999999999999986521
Q ss_pred ---CccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEE
Q 004914 171 ---GYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITF 215 (724)
Q Consensus 171 ---~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~ 215 (724)
......+.+|.++|++++|+ +.+++++ .|+.|++|++.+++....
T Consensus 293 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp SEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 02344456788999999998 6666666 799999999998765544
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.71 E-value=6.3e-16 Score=163.17 Aligned_cols=192 Identities=12% Similarity=0.148 Sum_probs=141.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE-EEeCCCCe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDYHRPM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v 136 (724)
+|+++|++|++|+.+| +++|+........ ..+...+..+++.++++.+ ++++.|++|++||..+++.. .+..+.+|
T Consensus 26 ~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v 103 (355)
T 3vu4_A 26 EFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV 103 (355)
T ss_dssp EECTTSSEEEEECSSE-EEEEEETTEEEEE-EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred EECCCCCEEEEEcCCE-EEEEecCCcceee-eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence 6889999999998876 6899985433221 1222357888999998877 56778899999999987654 45544489
Q ss_pred eEEEeCCCCC------------CCCC------------------CEEEE--ecCCCeEEEEecccCCc------------
Q 004914 137 KAISLDPDYT------------RKMS------------------RRFVA--GGLAGHLYLNSKKWLGY------------ 172 (724)
Q Consensus 137 ~~v~~~p~~~------------~~~~------------------~~l~~--g~~dg~v~l~~~~~~~~------------ 172 (724)
.+++|+++.. -.++ ..+++ |+.+|.|++|+.. .+.
T Consensus 104 ~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~-~~~~~~~~~~~~~~~ 182 (355)
T 3vu4_A 104 KDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ-SSGSATTQDQGVQQK 182 (355)
T ss_dssp EEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECC-C--------------
T ss_pred EEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECC-CCCcccccccccccc
Confidence 9999987510 0001 23333 6888999999875 222
Q ss_pred ----cceEeccCCCCeEEEEEe--CCEEEEE-cCCc-EEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 173 ----RDQVLHSGEGPVHVVKWR--TSLIAWA-NDAG-VKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 173 ----~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~-i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
....+.+|.++|++++|+ |.+++++ .|++ |++||+++++.+..+... .|...+.+++| +++..|++|
T Consensus 183 ~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g----~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG----LDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp ----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT----TCCSCEEEEEECTTSCEEEEE
T ss_pred ccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC----CCCCcEEEEEECCCCCEEEEE
Confidence 156778899999999999 6788877 6998 999999999999887631 02235778999 678888888
Q ss_pred -eCCeEEEEEEeeCC
Q 004914 244 -WGTYIKIASIKTNQ 257 (724)
Q Consensus 244 -~d~~i~vw~~~~~~ 257 (724)
.|++|++||+....
T Consensus 259 s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQ 273 (355)
T ss_dssp ETTCEEEEEESSCCS
T ss_pred ECCCEEEEEEccCCC
Confidence 88999999997653
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.71 E-value=1.2e-15 Score=161.75 Aligned_cols=190 Identities=7% Similarity=0.032 Sum_probs=135.2
Q ss_pred CceEEEEecCCEEEEEe-----------CCCeEEEEecCC--CeeE---EE-----cCCccceeEEEEcCCCCEEEEE--
Q 004914 55 DAASCVAVAERMIALGT-----------HAGTVHILDFLG--NQVK---EF-----PAHTAAVNDLSFDVDGEYVGSC-- 111 (724)
Q Consensus 55 ~~i~~~s~~~~~la~g~-----------~dg~I~i~d~~~--~~~~---~~-----~~h~~~V~~l~~s~~g~~l~s~-- 111 (724)
+.++|++++++.+++|+ .|+.+++|+... ..+. .. ..+...+.+++|+|||++++++
T Consensus 74 ~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 74 DSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp CCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred CceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 56789999999888874 467899998832 2221 11 2244568899999999987654
Q ss_pred eCCCCEEEEeccCCceEE-EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc--eEeccCCCCeEEEE
Q 004914 112 SDDGSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD--QVLHSGEGPVHVVK 188 (724)
Q Consensus 112 ~~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~--~~l~~~~~~V~~l~ 188 (724)
+.|++|+|||+.++.... +..+..|.+++|+|+ ++++++++.++.+.+|.. .+... .....|...|.+++
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspd-----g~~l~s~s~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTD-----GKVVAYITGSSLEVISTV--TGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTT-----SSEEEEECSSCEEEEETT--TCCEEEEECCCCTTEEEEEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccC-----CceEEeccceeEEEEEec--cCcceeeeecCCCCCCEEEEE
Confidence 478999999999977654 443339999999999 899999987665554433 23322 23445788899999
Q ss_pred Ee--CCEEEEE-cCC----cEEEEEcCCCceEE----EecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 189 WR--TSLIAWA-NDA----GVKVYDAANDQRIT----FIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 189 ~~--~~~la~~-~d~----~i~i~d~~~~~~~~----~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
|+ +..++++ .|+ .++.|++..+.... .+.. +...+.+++| +++.+|++| .|++|+|||+.+
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN------RFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES------SCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC------CCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 99 5666655 455 47888887664322 2222 2334778889 788999999 889999999876
Q ss_pred CC
Q 004914 256 NQ 257 (724)
Q Consensus 256 ~~ 257 (724)
++
T Consensus 301 ~~ 302 (365)
T 4h5i_A 301 LS 302 (365)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=166.24 Aligned_cols=191 Identities=11% Similarity=0.129 Sum_probs=140.0
Q ss_pred CceEE--EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEE--cCCCCEEEEEeCCCCEEEEeccCCce-EE
Q 004914 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSF--DVDGEYVGSCSDDGSVVINSLFTDEK-MK 129 (724)
Q Consensus 55 ~~i~~--~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~--s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~ 129 (724)
..|.+ |++++++|++|+.||.|++||........+..|...|++++| +|++.+|++++.||.|++||+.+++. ..
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 44554 777899999999999999999976666667789999999999 99999999999999999999987543 22
Q ss_pred EeCCC------------------------------------------CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEec
Q 004914 130 FDYHR------------------------------------------PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (724)
Q Consensus 130 ~~~~~------------------------------------------~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (724)
+..+. .+.++++.++... ....+++|+.||.+++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-KPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-CEEEEEEEETTSEEEEEES
T ss_pred EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-CCCeEEEecCCCcEEEEec
Confidence 22221 2334444333100 1233999999999999987
Q ss_pred ccCC--ccceEeccCCC------------CeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCC
Q 004914 168 KWLG--YRDQVLHSGEG------------PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLP 230 (724)
Q Consensus 168 ~~~~--~~~~~l~~~~~------------~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~ 230 (724)
.... .....+..|.. +|++++|+ +.+++++ .|+.|++||+.+++.+..+..+ ...+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~ 319 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL------DQPIS 319 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC------SSCEE
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC------CCCce
Confidence 6322 33445555554 79999999 5566666 7999999999999988876543 33577
Q ss_pred ceee-cCCCeEEEE-eCCeEEEEE
Q 004914 231 HLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 231 ~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
+++| +++..|++| .|+..+.|+
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGG
T ss_pred EEEECCCCCeEEEEeccccccccc
Confidence 8999 688888888 666544443
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.67 E-value=2.6e-14 Score=152.53 Aligned_cols=183 Identities=11% Similarity=0.153 Sum_probs=139.5
Q ss_pred EEEecCCEE-EEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCCEEEEeccCCceEE-EeCCC
Q 004914 59 CVAVAERMI-ALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINSLFTDEKMK-FDYHR 134 (724)
Q Consensus 59 ~~s~~~~~l-a~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd~~~~~~~~-~~~~~ 134 (724)
+|+++++.+ ++++.+|.|++||. +++.+..+..+. .|.+++|+|+|++++ +++.|+.|++||+.+++... +..+.
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 116 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC
Confidence 577888876 67779999999999 555566666555 899999999999875 55567999999999977654 45555
Q ss_pred CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEE-EEE-cCCcEEEEEcCC
Q 004914 135 PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLI-AWA-NDAGVKVYDAAN 209 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~l-a~~-~d~~i~i~d~~~ 209 (724)
.+.+++|+|+ ++.+ ++++.++.|++|+.. .+.....+..+ ..+.+++|+ ++.+ +++ .++.|++||+++
T Consensus 117 ~~~~~~~s~d-----g~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 117 SPLGLALSPD-----GKKLYVTNNGDKTVSVINTV-TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp SEEEEEECTT-----SSEEEEEETTTTEEEEEETT-TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CcceEEECCC-----CCEEEEEeCCCCEEEEEECC-CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 8999999999 6766 788889999999875 34444444444 456899998 5555 455 578999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE----eCCeEEEEEEeeC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG----WGTYIKIASIKTN 256 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g----~d~~i~vw~~~~~ 256 (724)
++.+..+.... .+..++| +++..++++ .++.|++||+.++
T Consensus 190 ~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 190 NSVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp TEEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CeEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 98887765432 3556778 577777776 3688999998653
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.65 E-value=5.7e-14 Score=149.92 Aligned_cols=177 Identities=13% Similarity=0.116 Sum_probs=135.5
Q ss_pred CEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceEE-EeCCCCeeEEEe
Q 004914 65 RMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKMK-FDYHRPMKAISL 141 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~~ 141 (724)
..+++|+.+|.|++||. +++.+..+..|. .+.+++|+|+|+++ ++++.|+.|++||+.+++... +..+..+.+++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 46788999999999999 455566777665 58999999999976 677799999999999877654 555559999999
Q ss_pred CCCCCCCCCCEE-EEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEE-EEE-cCCcEEEEEcCCCceEEEe
Q 004914 142 DPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLI-AWA-NDAGVKVYDAANDQRITFI 216 (724)
Q Consensus 142 ~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~l-a~~-~d~~i~i~d~~~~~~~~~i 216 (724)
+|+ ++.+ ++++.++.|.+|+.. .+.....+.. ...+.+++|+ ++.+ +++ .++.|++||+.+++.+..+
T Consensus 82 spd-----g~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 82 SPD-----GKQVYVTNMASSTLSVIDTT-SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp CTT-----SSEEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCC-----CCEEEEEECCCCEEEEEECC-CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999 6765 566677999999875 3444444443 4568999998 5655 455 5899999999999888776
Q ss_pred cCCCCCCCCCCCCCceee-cCCCeE-EEE-eCCeEEEEEEeeC
Q 004914 217 ERPRGSPRPELLLPHLVW-QDDTLL-VIG-WGTYIKIASIKTN 256 (724)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~-~~~~~l-~~g-~d~~i~vw~~~~~ 256 (724)
..+. .+..+.| +++..+ +++ .++.|++||++++
T Consensus 155 ~~~~-------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 155 SVGR-------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp ECCS-------SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ecCC-------CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 5542 2456778 566666 555 7889999998653
No 123
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.63 E-value=3.6e-15 Score=161.53 Aligned_cols=195 Identities=11% Similarity=0.097 Sum_probs=139.9
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEecCC-----------CeeE-----EEcCCccceeEEEEcCCCCEEE----EEeCCC
Q 004914 56 AASCVAVAERMIALGTHAGTVHILDFLG-----------NQVK-----EFPAHTAAVNDLSFDVDGEYVG----SCSDDG 115 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~~dg~I~i~d~~~-----------~~~~-----~~~~h~~~V~~l~~s~~g~~l~----s~~~Dg 115 (724)
...++++++.++++|+.+| +++|+... ..+. ....|.+.|++++|+|+|++|+ +|+.||
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3567888999999999988 88876510 0111 1123567899999999999999 788999
Q ss_pred CEEEEeccCC--------c----eEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCC
Q 004914 116 SVVINSLFTD--------E----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG 182 (724)
Q Consensus 116 ~v~iwd~~~~--------~----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~ 182 (724)
.|++||+.++ + ...+..|. .|++++|+|+ .+..+++|+.||+|++|+.+ .+........|..
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~----~~~~las~s~Dg~v~iwD~~-~~~~~~~~~~~~~ 193 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT----VPSMVAVCLADGSIAVLQVT-ETVKVCATLPSTV 193 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS----CTTEEEEEETTSCEEEEEES-SSEEEEEEECGGG
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC----CCCEEEEEECCCeEEEEEcC-CCcceeeccCCCC
Confidence 9999998753 1 22345567 9999999997 36899999999999999986 3333333455778
Q ss_pred CeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCC-CCCCCCCCceeecCCCeEE-EE--eCC------eEE
Q 004914 183 PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGS-PRPELLLPHLVWQDDTLLV-IG--WGT------YIK 249 (724)
Q Consensus 183 ~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~-~~~~~~~~~l~~~~~~~l~-~g--~d~------~i~ 249 (724)
.|++++|+ |++++++ .|+.|++||++ ++....+..+... ..+...+.++.|..+..++ +. .+| .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 99999999 6777766 79999999998 5555555544321 1233457789995444444 33 332 389
Q ss_pred EEEEeeCC
Q 004914 250 IASIKTNQ 257 (724)
Q Consensus 250 vw~~~~~~ 257 (724)
+|+++...
T Consensus 273 i~~l~~~~ 280 (434)
T 2oit_A 273 MALLPKKE 280 (434)
T ss_dssp EEECCCTT
T ss_pred EEEeccCC
Confidence 99998653
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.63 E-value=6.6e-14 Score=151.65 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=142.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCCEEEEeccCCceEE-EeCCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINSLFTDEKMK-FDYHRP 135 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd~~~~~~~~-~~~~~~ 135 (724)
+++++++++++++.+|.|++||. ++..+..+..|...+.+++|+|+|+.++ +++.||.|++||+.+++... +..+..
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 255 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL 255 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC
Confidence 35668899999999999999999 5566778888999999999999999875 55589999999999877654 444448
Q ss_pred eeEEEeCCCCCCCCCCEEEEec--------CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEE-cCCcEE
Q 004914 136 MKAISLDPDYTRKMSRRFVAGG--------LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWA-NDAGVK 203 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~--------~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~-~d~~i~ 203 (724)
+.+++|+|+ ++.+++++ .||.|++|+.. .+..... ..+.+.+.+++|+ ++ +++++ .++.|+
T Consensus 256 ~~~~~~~~~-----g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 256 PRGLLLSKD-----GKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EEEEEECTT-----SSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred ceEEEEcCC-----CCEEEEEECCCCccccCCCeEEEEECC-CCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 999999999 78888887 58899999875 3333332 2345578899998 54 44554 689999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-e---------------CCeEEEEEEeeC
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-W---------------GTYIKIASIKTN 256 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~---------------d~~i~vw~~~~~ 256 (724)
+||+.+++.+..+.... .+..++| +++..++++ . ||.|++||+.++
T Consensus 329 v~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFD-------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEETTTTEEEEEEECSS-------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEECCCCcEEEEecCCC-------CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 99999998887765322 3557888 677777777 3 359999997653
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.63 E-value=2.4e-14 Score=155.14 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC-CCeeE-----EEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL-GNQVK-----EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~-----~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (724)
.++++++.++++++.+|.|++||.. +.... .+.+|.+.|++++|+++|+.+++++.||.|++||+.+++. ..+
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence 3577877788888889999999994 55554 3457889999999999999999999999999999998665 456
Q ss_pred eCCC-CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--------
Q 004914 131 DYHR-PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-------- 198 (724)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-------- 198 (724)
..+. .+.+++|+|+ ++.+ ++++.+|.|.+|+.. .+.....+.. .+.+.+++|+ |..+++++
T Consensus 208 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 208 DLTGKWSKILLYDPI-----RDLVYCSNWISEDISVIDRK-TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp ECSSSSEEEEEEETT-----TTEEEEEETTTTEEEEEETT-TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred cCCCCCeeEEEEcCC-----CCEEEEEecCCCcEEEEECC-CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 6666 9999999999 6666 566689999999875 3444444433 4568999998 56666553
Q ss_pred -CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCC-eEEEE-eCCeEEEEEEee
Q 004914 199 -DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDT-LLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 199 -d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~-~l~~g-~d~~i~vw~~~~ 255 (724)
|+.|++||+.+++.+..+..+. .+..++| +++. .++++ .++.|++||+.+
T Consensus 281 ~dg~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTIGPPG-------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEE-------CEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEECCCCcEEeeccCCC-------CcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 6789999999988776653221 2456778 5665 44565 889999999865
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.62 E-value=1.1e-14 Score=147.99 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=109.0
Q ss_pred ceEEEEe---cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCc---cceeEEEEcCCCCEE------------EEEeCCCC
Q 004914 56 AASCVAV---AERMIALGTHAGTVHILDF-LGNQVKEFPAHT---AAVNDLSFDVDGEYV------------GSCSDDGS 116 (724)
Q Consensus 56 ~i~~~s~---~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~---~~V~~l~~s~~g~~l------------~s~~~Dg~ 116 (724)
.+.+|++ ++..||+|+.|++|+|||+ +|+.++++.+|. ..|.+++|+|+|.++ +||+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 3567888 6789999999999999999 688888887654 467788999999876 56888999
Q ss_pred EEEEeccCCceEEE------eCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeE-EEE
Q 004914 117 VVINSLFTDEKMKF------DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVH-VVK 188 (724)
Q Consensus 117 v~iwd~~~~~~~~~------~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~-~l~ 188 (724)
|++||..+++.... .+|. .+.+..+ + +..+++|+.||+|++|+.. .++...++.+|...+. .++
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--s-----g~~lASgS~DgTIkIWDl~-tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--K-----DHCAAAILTSGTIAIWDLL-LGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--E-----TTEEEEEETTSCEEEEETT-TCSEEEEECCC--CCCCEEE
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEcccc--C-----CCEEEEEcCCCcEEEEECC-CCcEEEEecCCCCCeEEEEE
Confidence 99999998876532 1333 3333332 2 4689999999999999986 6777788888876554 689
Q ss_pred Ee--CCEEEEE-cCCcEEEEEc
Q 004914 189 WR--TSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 189 ~~--~~~la~~-~d~~i~i~d~ 207 (724)
|+ |++|+++ .|++|++||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 99 6788887 6999999996
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.61 E-value=6.9e-14 Score=150.75 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=138.0
Q ss_pred EEEecCCEEEEEeCCC---eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCC--EEEEeccCCceEEEeC
Q 004914 59 CVAVAERMIALGTHAG---TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGS--VVINSLFTDEKMKFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg---~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~--v~iwd~~~~~~~~~~~ 132 (724)
+|+|+|+.|++++.++ .|++||+.+.....+..|.+.+.+++|+|+|+.|+ +++.||. |++||+.+++...+..
T Consensus 185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~ 264 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 264 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence 5899999999999875 99999996555556778888999999999999887 6676665 9999999988877777
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecC-CC--eEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC---CcE
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGL-AG--HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND---AGV 202 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg--~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d---~~i 202 (724)
+. .+.+++|+|+ ++.+++++. +| .+.+|+.. +.....+..+...+.+++|+ |++++++ .+ ..|
T Consensus 265 ~~~~~~~~~~spd-----g~~l~~~s~~~g~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 265 GRSNNTEPTWFPD-----SQNLAFTSDQAGRPQVYKVNIN--GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp CSSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETT--SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred CCCcccceEECCC-----CCEEEEEECCCCCcEEEEEECC--CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence 77 8999999999 788887775 56 45555543 34444555566788999999 6777766 33 479
Q ss_pred EEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC---eEEEEEEee
Q 004914 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT---YIKIASIKT 255 (724)
Q Consensus 203 ~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~---~i~vw~~~~ 255 (724)
++||+.+++... +..+ . .+..++| +++..|+++ .++ .|++|++..
T Consensus 338 ~~~d~~~~~~~~-l~~~------~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 338 AKQDLATGGVQV-LSST------F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp EEEETTTCCEEE-CCCS------S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred EEEECCCCCEEE-ecCC------C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 999999887643 2211 1 4567888 678878777 444 688888653
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.59 E-value=2.1e-13 Score=146.99 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=137.4
Q ss_pred CCEEEEEeCC------CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC---CEEEEeccCCceEEEeCCC
Q 004914 64 ERMIALGTHA------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG---SVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 64 ~~~la~g~~d------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg---~v~iwd~~~~~~~~~~~~~ 134 (724)
+..+++++.+ +.|++||..+.....+..|...|.+++|+|+|++|++++.++ .|++||+.+++...+..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 5666666654 799999998877888888999999999999999999999885 9999999998887777777
Q ss_pred -CeeEEEeCCCCCCCCCCEEE-EecCCCe--EEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc--CC--cEEE
Q 004914 135 -PMKAISLDPDYTRKMSRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKV 204 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~-~g~~dg~--v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~--d~--~i~i 204 (724)
.+.+++|+|+ ++.++ +++.+|. |.+|+.. ......+..+.+.+.+++|+ |+.++.++ ++ .|.+
T Consensus 223 ~~~~~~~~spd-----g~~la~~~~~~g~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 223 RHNGAPAFSPD-----GSKLAFALSKTGSLNLYVMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp SCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETT--TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CcccCEEEcCC-----CCEEEEEEecCCCceEEEEECC--CCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 8999999999 78777 6666665 7777764 33445667788889999999 67666653 34 5777
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC---CeEEEEEEeeCC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG---TYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d---~~i~vw~~~~~~ 257 (724)
||+.+++... +.. +...+..+.| ++++.|+++ .+ ..|++||+.++.
T Consensus 296 ~d~~~~~~~~-l~~------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 296 VNINGGAPQR-ITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EETTSSCCEE-CCC------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred EECCCCCEEE-Eec------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 7988776432 211 1224556788 688888777 33 479999986543
No 129
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.59 E-value=4.6e-14 Score=145.69 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=110.5
Q ss_pred ceEE--EEecCCEEEEEeCCCeEEEEecC-CCee-----------------------------------------EEEcC
Q 004914 56 AASC--VAVAERMIALGTHAGTVHILDFL-GNQV-----------------------------------------KEFPA 91 (724)
Q Consensus 56 ~i~~--~s~~~~~la~g~~dg~I~i~d~~-~~~~-----------------------------------------~~~~~ 91 (724)
.|+| |+++++++++|+.||+|++|+.. ++.+ ..+.+
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 148 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence 3555 77789999999999999999983 3322 23345
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-----EEEeCCC--------------------------------
Q 004914 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-----MKFDYHR-------------------------------- 134 (724)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-----~~~~~~~-------------------------------- 134 (724)
|...+.++.++++|+++++++.||.|++||+.+++. .....+.
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 677788888999999999999999999999876321 1111111
Q ss_pred -------------CeeEEEeCCCCCCCCCCEEEE--ecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE
Q 004914 135 -------------PMKAISLDPDYTRKMSRRFVA--GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 135 -------------~v~~v~~~p~~~~~~~~~l~~--g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~ 197 (724)
.+..+.|+|. +..+++ |+.||.|++|+.. .+.....+.+|.++|++++|+ |.+|+++
T Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~sg~~d~~i~iwd~~-~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 229 CSGACLSAVDAHSQVCSILWSPH-----YKELISGHGFAQNQLVIWKYP-TMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp TTCCEEEEEECSSCEEEEEEETT-----TTEEEEEECTTTCCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ccccccccccceeeeeeeeeccc-----ccceEEEEEcCCCEEEEEECC-CCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 3445555555 444444 4478899999875 567778888999999999999 6677766
Q ss_pred -cCCcEEEEEcCCC
Q 004914 198 -NDAGVKVYDAAND 210 (724)
Q Consensus 198 -~d~~i~i~d~~~~ 210 (724)
.|++|++||+...
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 7999999998754
No 130
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=99.58 E-value=3.8e-18 Score=174.66 Aligned_cols=279 Identities=15% Similarity=0.153 Sum_probs=202.9
Q ss_pred HHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCC
Q 004914 410 EKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLR 489 (724)
Q Consensus 410 ~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~ 489 (724)
+.|.+.|++.. .++.+..+|++|++. ++..+|...| +-++++..+.+||.....+++.+.|++||.+.+..+.
T Consensus 42 dRa~eyA~~~n-~p~VWs~LgkAqL~~----~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k 114 (624)
T 3lvg_A 42 DRAYEFAERCN-EPAVWSQLAKAQLQK----GMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 114 (624)
T ss_dssp TTTTTSSSSCC-CCCCSSSHHHHTTTS----SSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHcc----CchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 34444444332 344566777777665 4555666543 3366788999999999999999999999999877776
Q ss_pred HHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q 004914 490 DTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLM 569 (724)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~ 569 (724)
+...++.|...+.+......+.++|.. ++.-++..+-..|-+. .+|+++.+||....+|.+.-.++++++
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl~~--~N~A~iq~VGDrcf~e--------~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDE--------KMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTTSC--CSSSCTHHHHHHHHHS--------CCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHHcC--CCcccHHHHHHHHHHc--------cCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 666665555554332233334444443 3444544444433333 378899999999999999999999999
Q ss_pred Cch-hhHHHHhcC---ChHHHHHHHHHHHccChhH--HHHHhhhcCCCCChHHHHHHHhcccccCCchhHHHHHHHHHHh
Q 004914 570 KPY-IFDFIENHN---LHDAIREKVVQLMLLDCKR--AVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFE 643 (724)
Q Consensus 570 ~~~-~~~~i~~~~---l~~~~~~~~~~L~~~~~~~--~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~ 643 (724)
+.+ |.+-.+|.+ .|..|...+.+--++...+ ++++++... ..+++|..++.. ..+ .-|-.|++
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad---eL~elv~~YE~~------G~f--~ELIsLlE 253 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDR------GYF--EELITMLE 253 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS---CCSGGGSSSSTT------CCC--TTSTTTHH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH---HHHHHHHHHHhC------CCH--HHHHHHHH
Confidence 866 888888876 8999999888877766555 778888653 456788887743 222 22333444
Q ss_pred cCCCCChhhHHHHHHH---HHhcchhhhHHHhhh-cCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHHHHHHH
Q 004914 644 VNPHAGKDFHDMQVEL---YADYDLKMLLPFLRS-SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINK 716 (724)
Q Consensus 644 ~~~~~~~~~~~~lv~L---y~~~~~~~ll~fL~~-~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~ 716 (724)
......+++..++.|| |++|.|+|||++|+. .+..+++|+++.|++.++|+|.||||.+..+++.|...||++
T Consensus 254 aglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h 330 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 330 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSC
T ss_pred HHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhC
Confidence 4444566666666655 999999999999999 578999999999999999999999999999999999999976
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.54 E-value=1.7e-13 Score=148.29 Aligned_cols=145 Identities=13% Similarity=0.141 Sum_probs=112.7
Q ss_pred EEEecCCEEE----EEeCCCeEEEEecC-C--------Ce---eEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEe
Q 004914 59 CVAVAERMIA----LGTHAGTVHILDFL-G--------NQ---VKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINS 121 (724)
Q Consensus 59 ~~s~~~~~la----~g~~dg~I~i~d~~-~--------~~---~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd 121 (724)
+|+++|++|+ +|+.||.|++||+. + +. +..+.+|...|++++|+|+ +.+|++|+.||+|++||
T Consensus 99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 4778899999 78889999999983 2 11 3556779999999999998 78999999999999999
Q ss_pred ccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-------CCCCeEEEEEe--
Q 004914 122 LFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-------GEGPVHVVKWR-- 190 (724)
Q Consensus 122 ~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-------~~~~V~~l~~~-- 190 (724)
++++... ....|. .|++++|+|+ ++++++|+.||.|++|+.+ +.....+.. |...|.++.|+
T Consensus 179 ~~~~~~~~~~~~~~~~v~~v~wspd-----g~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 179 VTETVKVCATLPSTVAVTSVCWSPK-----GKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp ESSSEEEEEEECGGGCEEEEEECTT-----SSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred cCCCcceeeccCCCCceeEEEEcCC-----CCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecC
Confidence 9987543 345566 9999999999 8999999999999999875 333333322 23378999999
Q ss_pred CCEEEEE--cCCc------EEEEEcCCC
Q 004914 191 TSLIAWA--NDAG------VKVYDAAND 210 (724)
Q Consensus 191 ~~~la~~--~d~~------i~i~d~~~~ 210 (724)
+.++++. .+|. +++|+++..
T Consensus 252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3455443 3432 899999864
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.50 E-value=2.6e-12 Score=130.44 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=134.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCC--CeeEEEcCC-ccceeEEEEcCCCCEEEEEe--CCCCEEEEec--cCCceEEEe
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLG--NQVKEFPAH-TAAVNDLSFDVDGEYVGSCS--DDGSVVINSL--FTDEKMKFD 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~--~~~~~~~~h-~~~V~~l~~s~~g~~l~s~~--~Dg~v~iwd~--~~~~~~~~~ 131 (724)
+|+|+|+++++++ ++.|++||..+ ........| ...|.+++|+|+|++|++++ .++.+.||.+ .++....+.
T Consensus 48 ~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (297)
T 2ojh_A 48 NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT 126 (297)
T ss_dssp EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC
T ss_pred EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee
Confidence 5889999999886 78999999954 444444455 46889999999999999998 4456666654 456655555
Q ss_pred CCCCeeEEEeCCCCCCCCCCEEE-EecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEE
Q 004914 132 YHRPMKAISLDPDYTRKMSRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYD 206 (724)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~-~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d 206 (724)
.+..+.+++|+|+ ++.++ +++.++.+.+|.....+.....+..+.+.+.++.|+ |+.++.+ .++.+++|+
T Consensus 127 ~~~~~~~~~~spd-----g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 127 KNLPSYWHGWSPD-----GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp SSSSEEEEEECTT-----SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCccceEECCC-----CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 5557899999999 77666 788899999998754455556666778889999998 6666544 488899998
Q ss_pred cC-CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC-----------CeEEEEEEeeC
Q 004914 207 AA-NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG-----------TYIKIASIKTN 256 (724)
Q Consensus 207 ~~-~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d-----------~~i~vw~~~~~ 256 (724)
+. .+.....+..+ ...+..+.| +++..|+++ .+ +.|++||+.++
T Consensus 202 ~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 202 VRVDGSSVERITDS------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EETTSSCEEECCCC------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred ECCCCCCcEEEecC------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 86 44444443322 223556788 678877776 43 45899987653
No 133
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=4.1e-13 Score=155.99 Aligned_cols=298 Identities=14% Similarity=0.080 Sum_probs=205.7
Q ss_pred HHHHhcccHHHHHHHHHhcCCCch----------------------hHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSE----------------------LLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~----------------------~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+.+.|+|+||+++.++.....+ ....+.-+++..+...|+|++|+..|.+ +++.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK--AdD~ 1134 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDP 1134 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh--cCCh
Confidence 557789999999999887653111 0156778888999999999999998755 4778
Q ss_pred hhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccC
Q 004914 459 SAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSS 538 (724)
Q Consensus 459 ~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 538 (724)
+.|.+++..+.+.+..+.+++|+.+.+...++...++-|...+.+....+.+..+++.-. .-+...+-..+.+.
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n--~ad~~~iGd~le~e---- 1208 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN--NAHIQQVGDRCYDE---- 1208 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCC--HHHHHHHHHHHHhc----
Confidence 899999999999999999999998854333332222234443333335555666654321 11111222222222
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCch-hhHHHHhcCC---hHHHHHHHHHHHccChhH--HHHHhhhcCCCC
Q 004914 539 SMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHNL---HDAIREKVVQLMLLDCKR--AVSLLIQNKDLI 612 (724)
Q Consensus 539 ~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~l---~~~~~~~~~~L~~~~~~~--~~~ll~~~~~~~ 612 (724)
..++.+..+|.+.++|.++..+|+++++.+ |.+..++.+- |..+...+...-++...+ ++. ++.+.+
T Consensus 1209 ----g~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d-- 1281 (1630)
T 1xi4_A 1209 ----KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-- 1281 (1630)
T ss_pred ----CCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH--
Confidence 267788888888889999999999988755 7777777653 332322222222222211 222 222211
Q ss_pred ChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhhHHHhhh-cCCCCHHHHHHHHhcCC
Q 004914 613 TPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRS-SQHYTLEKAYEICVKRD 691 (724)
Q Consensus 613 ~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~ll~fL~~-~~~y~~~~al~~c~~~~ 691 (724)
..+.++..+++. +.-..++.+|+.-...+ .....+.+.|..||++|.|++++++|+- ...-+++++++.|++.+
T Consensus 1282 eLeeli~yYe~~----G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1282 ELEELINYYQDR----GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 344777777754 33445668888876655 3455677888889999999999999999 57789999999999999
Q ss_pred CchhHHHHHhccCChHHHHHHHHHHhC
Q 004914 692 LLREQVFILGRMGNTKHALAVIINKLG 718 (724)
Q Consensus 692 ~~~e~v~Ll~k~g~~~~Al~l~~~~l~ 718 (724)
+|.+.||||.+.|+++.|+..|+++..
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~ 1383 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPT 1383 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccH
Confidence 999999999999999999999998753
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.43 E-value=1.1e-10 Score=122.03 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=136.2
Q ss_pred eEEEEecCCEEE-EEeCCCeEEEEec-CCCeeEEEcCCccc---------eeEEEEcCCCCEEEEEe--CCCCEEEEecc
Q 004914 57 ASCVAVAERMIA-LGTHAGTVHILDF-LGNQVKEFPAHTAA---------VNDLSFDVDGEYVGSCS--DDGSVVINSLF 123 (724)
Q Consensus 57 i~~~s~~~~~la-~g~~dg~I~i~d~-~~~~~~~~~~h~~~---------V~~l~~s~~g~~l~s~~--~Dg~v~iwd~~ 123 (724)
-.+++++|+.++ ++..++.|.+||. +++.+..+..+... +.+++|+|+|+++++++ .++.|.+||..
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 346889998554 4555799999999 56666666654322 68899999999877665 47899999999
Q ss_pred CCceEE-EeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc----CCCCeEEEEEe--CCEEE
Q 004914 124 TDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS----GEGPVHVVKWR--TSLIA 195 (724)
Q Consensus 124 ~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~----~~~~V~~l~~~--~~~la 195 (724)
+++... +..+. .+.+++|+|+ ++.+++++.++.+.+|+.. .+.....+.. +...+.+++|+ |+.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSE-----GKRLYTTNADGELITIDTA-DNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETT-----TTEEEEECTTSEEEEEETT-TTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred CCceEEEecCCCCccceEEECCC-----CCEEEEEcCCCeEEEEECC-CCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 877654 44344 6899999999 8889999999999999875 3444434332 34567889998 66555
Q ss_pred EE--cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 196 WA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 196 ~~--~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
++ .++.|.+||..+++.+..+..+. ...+.| ++++.++++ .++.|.+||+.++
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~--------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPE--------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS--------CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCC--------CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 55 35899999999999888776542 235777 566655544 6889999997653
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.42 E-value=3.8e-11 Score=121.74 Aligned_cols=173 Identities=12% Similarity=0.116 Sum_probs=125.1
Q ss_pred EEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceEEE-eCC-C-CeeEEEeCCC
Q 004914 69 LGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKF-DYH-R-PMKAISLDPD 144 (724)
Q Consensus 69 ~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~-~~~-~-~v~~v~~~p~ 144 (724)
.++.++.|++||..+.....+..|...|.+++|+|+|++|++++ ++.|++||+.+ +....+ ..+ . .+.+++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 34678999999997766667777999999999999999999987 78999999998 776554 334 2 7899999999
Q ss_pred CCCCCCCEEEEec--CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEE-EE-cCCcEEEEEcC--CCceEEEe
Q 004914 145 YTRKMSRRFVAGG--LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA-WA-NDAGVKVYDAA--NDQRITFI 216 (724)
Q Consensus 145 ~~~~~~~~l~~g~--~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la-~~-~d~~i~i~d~~--~~~~~~~i 216 (724)
++.+++++ .++...+|.....+.....+..+. .+..++|+ ++.++ ++ .++.+++|++. ++... .+
T Consensus 96 -----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~ 168 (297)
T 2ojh_A 96 -----GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RL 168 (297)
T ss_dssp -----SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred -----CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-Ec
Confidence 88898888 445666666543344444444433 48889998 56655 44 68889999864 34332 22
Q ss_pred cCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 217 ERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
.. +...+.++.| +++..++++ .++.+++|++..
T Consensus 169 ~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 169 TH------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp CC------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cc------CCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 22 1223567888 677766655 488899999974
No 136
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.42 E-value=8e-13 Score=138.64 Aligned_cols=295 Identities=15% Similarity=0.117 Sum_probs=114.2
Q ss_pred HHHHHh-cccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCccc
Q 004914 400 IAWLLE-HGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLV 478 (724)
Q Consensus 400 i~~ll~-~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~ 478 (724)
|+.|++ -|+.++|.+.++....+ .+...-+..+..++++++|.+.|.+. .+...|..++......++++.+.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~-----~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP-----AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHH
Confidence 455554 45599999999877532 36667777778889999999988763 45778999999999999999999
Q ss_pred ccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCH
Q 004914 479 PYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHY 558 (724)
Q Consensus 479 ~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 558 (724)
+|+.+.+..++++..+.-|..++.+..+.....++++... .. ....+.+.+ .....++.+..+|....+|
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn--~~----a~~~IGd~~----~~~g~yeeA~~~Y~~a~n~ 151 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN--NA----HIQQVGDRC----YDEKMYDAAKLLYNNVSNF 151 (449)
T ss_dssp ---------------------------CHHHHTTTTTCC--------------------------CTTTHHHHHHHTTCH
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc--HH----HHHHHHHHH----HHcCCHHHHHHHHHHhhhH
Confidence 9999976555544444444444444446666666665421 11 112222222 2222444555555555555
Q ss_pred HHHHHHHHHcCCch-hhHHHHhcC---ChHHHHHHHHHHHccChhH--HHHHhhhcCCCCChHHHHHHHhcccccCCchh
Q 004914 559 EKAFSLYADLMKPY-IFDFIENHN---LHDAIREKVVQLMLLDCKR--AVSLLIQNKDLITPSEVVTQLLNARDKCDSRY 632 (724)
Q Consensus 559 ~~al~~~~~~~~~~-~~~~i~~~~---l~~~~~~~~~~L~~~~~~~--~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~ 632 (724)
.+-..+++++++.+ |.+..++.+ .|..+..-+..+-+.+..+ +..|. .+.+ ....++..+++. ++..
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad--~l~~lv~~Yek~----G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHAD--ELEELINYYQDR----GYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHH--HHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHh--hHHHHHHHHHHC----CCHH
Confidence 55555555555533 444444443 2233333333322222221 11111 1111 133455566643 3445
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcchhhhHHHhhh-cCCCCHHHHHHHHhcCCCchhHHHHHhccCChHHHHH
Q 004914 633 FLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRS-SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALA 711 (724)
Q Consensus 633 ~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~~~~~~~ll~fL~~-~~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~~Al~ 711 (724)
-++.+|+.-...+. .-..+-+.|-.||++|.|++|+++|+. ....+++++++.|++.++|.|.||||...|+++.|+.
T Consensus 225 Eai~lLe~aL~le~-ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLER-AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 56688888766552 344555666777999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 004914 712 VIINKLGD 719 (724)
Q Consensus 712 l~~~~l~d 719 (724)
.|+++..+
T Consensus 304 tm~~h~~~ 311 (449)
T 1b89_A 304 TMMNHPTD 311 (449)
T ss_dssp HHHHSTTT
T ss_pred HHHhCChh
Confidence 99998544
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.42 E-value=8.1e-12 Score=139.06 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=139.5
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEec--cCCceE-EEeCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL--FTDEKM-KFDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~--~~~~~~-~~~~~~ 134 (724)
.+++++..+++++.+|+|.+||. +++.+..+..+.. +.+++|+|+|+++++++.|++|++||+ .++++. ++..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 47788889999999999999999 5677777774333 889999999999999999999999999 666554 456555
Q ss_pred CeeEEEeCC----CCCCCCCCEEEEec-CCCeEEEEecccCCccceEecc----------C-CCCeEEEEEe--C-CEEE
Q 004914 135 PMKAISLDP----DYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHS----------G-EGPVHVVKWR--T-SLIA 195 (724)
Q Consensus 135 ~v~~v~~~p----~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~----------~-~~~V~~l~~~--~-~~la 195 (724)
.+.+++|+| + ++++++++ .+++|.+|+.. .+....++.. | ...+.++.++ + .+++
T Consensus 223 ~p~~va~sp~~~~d-----g~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 223 EARSVESSKFKGYE-----DRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EEEEEEECCSTTCT-----TTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred CcceEEeCCCcCCC-----CCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 789999999 8 78888887 58999999864 4444444433 1 2368889998 3 4455
Q ss_pred EE-cCCcEEEEEcCCCceEE--EecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 196 WA-NDAGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 196 ~~-~d~~i~i~d~~~~~~~~--~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
+. .++.|.+||..+.+.+. .+.. ..++..+.| +++++++++ .+++|.+||+.++.
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i~~-------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSIGA-------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEEEC-------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EECCCCeEEEEEecCCCcceeEEecc-------CcCccCceECCCCCEEEEEecCCCeEEEEECCCCe
Confidence 55 58899999998765443 3332 224556788 677766555 68899999987764
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.40 E-value=8.3e-11 Score=122.38 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=127.7
Q ss_pred EEEEecCCEEEEEeCC-CeEEEEecC--CCe---eEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccC---Cce
Q 004914 58 SCVAVAERMIALGTHA-GTVHILDFL--GNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFT---DEK 127 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d-g~I~i~d~~--~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~---~~~ 127 (724)
.+|+|+|+++++++.+ |.|.+|++. +.. +..+..+. .+.+++|+|+|+++++++. ++.|.+||+.. ...
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4789999988888876 999999985 322 23444444 7899999999998866654 88999999943 223
Q ss_pred E-EEeCCCCeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccce----Eecc-CCCCeEEEEEe--CCEEE-EE
Q 004914 128 M-KFDYHRPMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQ----VLHS-GEGPVHVVKWR--TSLIA-WA 197 (724)
Q Consensus 128 ~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~----~l~~-~~~~V~~l~~~--~~~la-~~ 197 (724)
. .+..+..+.+++|+|+ ++.+++++ .++.+.+|+..-.+.... .... ....+.+++|+ +++++ ++
T Consensus 122 ~~~~~~~~~~~~~~~s~d-----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 122 VDVVEGLDGCHSANISPD-----NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EEEECCCTTBCCCEECTT-----SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCceEEEECCC-----CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence 2 3344448899999999 77777666 889999998752232221 2222 23467889998 56554 44
Q ss_pred -cCCcEEEEEcCC--Cce--EEEecCCCCCCCCCCCCCceee-cCCCeEEE-E-eCCeEEEEEEee
Q 004914 198 -NDAGVKVYDAAN--DQR--ITFIERPRGSPRPELLLPHLVW-QDDTLLVI-G-WGTYIKIASIKT 255 (724)
Q Consensus 198 -~d~~i~i~d~~~--~~~--~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g-~d~~i~vw~~~~ 255 (724)
.++.+.+|++.. ++. ...+............+..++| +++..+++ + .++.|++|++..
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 588999999953 433 2222211111111223446888 56666664 4 678999999973
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.40 E-value=9e-11 Score=121.82 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=126.2
Q ss_pred EEecCC-EEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccCCce--EEEeCCC
Q 004914 60 VAVAER-MIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDEK--MKFDYHR 134 (724)
Q Consensus 60 ~s~~~~-~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~~--~~~~~~~ 134 (724)
+..+++ .+++++.++.|.+||. +++....+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ..+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 444444 5778888999999999 566666666666667 9999999997766655 89999999998774 3455555
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCC---eEEEEecccCCccceEeccCCCCeEEEEEe--CC-EEEEE-cCCc-EEEE
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAWA-NDAG-VKVY 205 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~-~la~~-~d~~-i~i~ 205 (724)
+..+++|+|+ ++.++++..++ .|.+|+.. .+.....+..+ ....+++|+ |+ ++++. .++. +.+|
T Consensus 84 ~~~~~~~~s~d-----g~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 84 SSMADVDITPD-----DQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp SCCCCEEECTT-----SSEEEECCCSSSSCEEEEEETT-TTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred CCccceEECCC-----CCEEEEecCCCCcccEEEEECC-CCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence 5555999999 78888666553 89999875 34444444443 346899999 55 44444 4577 9999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE-E-eCCeEEEEEEeeCC
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI-G-WGTYIKIASIKTNQ 257 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g-~d~~i~vw~~~~~~ 257 (724)
++.....+...... .......+..+.| ++++.+++ + .++.|++||+.++.
T Consensus 157 ~~~~~g~~~~~~~~--~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 157 KIDADGVLFDTGQE--FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EECTTCCEEEEEEE--EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EECCCCcEeecCCc--cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 99854433211100 0011122456778 67775544 4 67899999987644
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.34 E-value=8.8e-11 Score=121.90 Aligned_cols=187 Identities=8% Similarity=0.093 Sum_probs=132.3
Q ss_pred eEEEEecCCEEEEEeC-CCeEEEEec-CCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCC---CEEEEeccCCceEE-
Q 004914 57 ASCVAVAERMIALGTH-AGTVHILDF-LGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDG---SVVINSLFTDEKMK- 129 (724)
Q Consensus 57 i~~~s~~~~~la~g~~-dg~I~i~d~-~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg---~v~iwd~~~~~~~~- 129 (724)
..+++++|+++++++. ++.|.+||. ++.. ...+..+..++.+++|+|+|++++++..++ .|.+||+.+++...
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 3468889986666555 899999999 4554 566666766666699999999998555553 89999999877654
Q ss_pred EeCCCCeeEEEeCCCCCCCCCC-EEEEecCCCe-EEEEecccCCcc----ceEeccCCCCeEEEEEe--CCEEE-EE-cC
Q 004914 130 FDYHRPMKAISLDPDYTRKMSR-RFVAGGLAGH-LYLNSKKWLGYR----DQVLHSGEGPVHVVKWR--TSLIA-WA-ND 199 (724)
Q Consensus 130 ~~~~~~v~~v~~~p~~~~~~~~-~l~~g~~dg~-v~l~~~~~~~~~----~~~l~~~~~~V~~l~~~--~~~la-~~-~d 199 (724)
+..+..+.+++|+|+ ++ .++++..++. +.+|+..-.+.. ...+ .......+++|+ |+.++ ++ .+
T Consensus 124 ~~~~~~~~~~~~spd-----g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 124 IPIPYDAVGIAISPN-----GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp EECCTTEEEEEECTT-----SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT
T ss_pred EECCCCccceEECCC-----CCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC
Confidence 444457799999999 66 4555566678 999987532221 1222 233457889998 66554 44 47
Q ss_pred CcEEEEEcCCCce---EEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeC
Q 004914 200 AGVKVYDAANDQR---ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 200 ~~i~i~d~~~~~~---~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~ 256 (724)
+.|.+||+.+++. +..+... ..+..++| ++++.++++ .++.|.+||+.++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~-------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN-------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS-------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC-------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 8899999998887 6666543 23456788 677866666 5677999997654
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.34 E-value=1.4e-11 Score=143.19 Aligned_cols=187 Identities=15% Similarity=0.118 Sum_probs=133.9
Q ss_pred EEEEecCCEEEEEeC-CC-----eEEEEecC-CCeeEEEcCCcc------------------------ceeEEEEcCCCC
Q 004914 58 SCVAVAERMIALGTH-AG-----TVHILDFL-GNQVKEFPAHTA------------------------AVNDLSFDVDGE 106 (724)
Q Consensus 58 ~~~s~~~~~la~g~~-dg-----~I~i~d~~-~~~~~~~~~h~~------------------------~V~~l~~s~~g~ 106 (724)
.+|+|+|++|++++. +| .|++||.. +.....+..+.. .|.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 368999999999998 88 99999995 444444444332 388999999999
Q ss_pred EEEEEeCCCCEEEEeccCC---ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCC
Q 004914 107 YVGSCSDDGSVVINSLFTD---EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG 182 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~---~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~ 182 (724)
+|++++. +.|++||+.++ ....+..+. .+.+++|+|+ |+.+++++. +.|.+|+.. .+........+..
T Consensus 122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-----G~~la~~~~-~~i~~~d~~-~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-----GGFVSFIRG-RNLWVIDLA-SGRQMQLTADGST 193 (741)
T ss_dssp EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-----SSEEEEEET-TEEEEEETT-TTEEEECCCCCCS
T ss_pred EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC-----CCEEEEEeC-CcEEEEecC-CCCEEEeccCCcc
Confidence 9999987 99999999998 777777666 8999999999 888888874 589998864 2332222222222
Q ss_pred C----------------eEEEEEe--CCEEEEE-cCC---------------------------------cEEEEEcCC-
Q 004914 183 P----------------VHVVKWR--TSLIAWA-NDA---------------------------------GVKVYDAAN- 209 (724)
Q Consensus 183 ~----------------V~~l~~~--~~~la~~-~d~---------------------------------~i~i~d~~~- 209 (724)
. +.++.|+ |+.|+++ .|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 4778999 6666665 444 688889888
Q ss_pred CceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-e-----CCeEEEEEEeeC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-W-----GTYIKIASIKTN 256 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~-----d~~i~vw~~~~~ 256 (724)
++....... ..+...+..++|++++.|+++ . +..|++||+.++
T Consensus 274 ~~~~~~~~~----~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 274 AQTQWIDLG----KEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp CCCEEECCC----SCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred CceEEecCC----CCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 765543211 123345667778777877766 3 346888887654
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.33 E-value=5.3e-12 Score=146.40 Aligned_cols=191 Identities=12% Similarity=0.131 Sum_probs=133.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCcc---ceeEEEEcCCCCEEEEEeCC---------CCEEEEeccCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTA---AVNDLSFDVDGEYVGSCSDD---------GSVVINSLFTD 125 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~---~V~~l~~s~~g~~l~s~~~D---------g~v~iwd~~~~ 125 (724)
+|+|+|+++++ +.+|+|++||. ++.....+..|.. .|.+++|||||++|++++.+ +.+.+||+.++
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence 69999997765 78999999999 5555566666654 49999999999999999875 67889999998
Q ss_pred ceEEEeCC---C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC------------------
Q 004914 126 EKMKFDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP------------------ 183 (724)
Q Consensus 126 ~~~~~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~------------------ 183 (724)
....+... . .+.+++|+|+ |+.+++++. +.|.+|+.. .+........+...
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~SPd-----G~~la~~~~-~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 102 DPQSLDPPEVSNAKLQYAGWGPK-----GQQLIFIFE-NNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSS-----TTCEEEEET-TEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ceEeccCCccccccccccEECCC-----CCEEEEEEC-CeEEEEECC-CCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 76555432 2 4889999999 889998876 789998764 34333333333322
Q ss_pred eEEEEEe--CCEEEEE-cCC----------------------------------cEEEEEcCCCceEEEecCCCCCCCCC
Q 004914 184 VHVVKWR--TSLIAWA-NDA----------------------------------GVKVYDAANDQRITFIERPRGSPRPE 226 (724)
Q Consensus 184 V~~l~~~--~~~la~~-~d~----------------------------------~i~i~d~~~~~~~~~i~~~~~~~~~~ 226 (724)
+.+++|+ |+.|+.+ .++ .|++||+.+++....+..+.....+.
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 3789999 6777766 332 68889988877544443332111123
Q ss_pred CCCCceee-cCCCeEEEE-eC----CeEEEEEEeeCC
Q 004914 227 LLLPHLVW-QDDTLLVIG-WG----TYIKIASIKTNQ 257 (724)
Q Consensus 227 ~~~~~l~~-~~~~~l~~g-~d----~~i~vw~~~~~~ 257 (724)
..+..+.| ++++.++++ .. ..|++||+.++.
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 34567889 677777665 22 358888876543
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.33 E-value=9.4e-11 Score=121.65 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=130.8
Q ss_pred EEEEecCCEE-EEEeCCCeEEEEec-CCCeeEEEcC-C----ccceeEEEEcCCCCEEEEEe------------CCCCEE
Q 004914 58 SCVAVAERMI-ALGTHAGTVHILDF-LGNQVKEFPA-H----TAAVNDLSFDVDGEYVGSCS------------DDGSVV 118 (724)
Q Consensus 58 ~~~s~~~~~l-a~g~~dg~I~i~d~-~~~~~~~~~~-h----~~~V~~l~~s~~g~~l~s~~------------~Dg~v~ 118 (724)
.+++++|+.+ ++++.++.|.+||. ++..+..+.. + ...+.+++|+|+|+++++++ .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 4789999765 55566899999999 5555555543 2 23678899999999988886 579999
Q ss_pred EEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-------------------
Q 004914 119 INSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH------------------- 178 (724)
Q Consensus 119 iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~------------------- 178 (724)
+||+.+++.. .+.....+.+++|+|+ ++.++++ ++.+.+|+.. .+.....+.
T Consensus 119 v~d~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~--~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 119 LYDAETLSRRKAFEAPRQITMLAWARD-----GSKLYGL--GRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp EEETTTTEEEEEEECCSSCCCEEECTT-----SSCEEEE--SSSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred EEECCCCcEEEEEeCCCCcceeEECCC-----CCEEEEe--CCeEEEEECC-CCcEeeeeeccccCCCceeCCCccEEee
Confidence 9999887654 3444447889999999 7777777 5789988743 111111110
Q ss_pred -----------------------------------------------cCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCC
Q 004914 179 -----------------------------------------------SGEGPVHVVKWR--TSLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 179 -----------------------------------------------~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~ 209 (724)
.+...+.+++|+ |++++++ ++.|.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~ 269 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK 269 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC
Confidence 111234467787 5677766 78999999999
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
++.+..+..+. .+..++| ++++.++++ .++.|++||+.++.
T Consensus 270 ~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 270 NASIKRVPLPH-------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp TEEEEEEECSS-------CCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CcCcceecCCC-------ceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 98887765432 2456788 577777777 88999999987654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.31 E-value=3.6e-10 Score=117.22 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=107.9
Q ss_pred CEEEEEeCCCeEEEEecC-CCeeEEEcCCc-c-ceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE-EEeCCC-----
Q 004914 65 RMIALGTHAGTVHILDFL-GNQVKEFPAHT-A-AVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDYHR----- 134 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~-~~~~~~~~~h~-~-~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~~~----- 134 (724)
+++++++.++.|.+||.. ++.+..+.... . .+.+++|+|+|+.+ ++++.++.|.+||+.+++.. .+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478899999999999994 55555554322 2 47889999999865 56666899999999987754 344322
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEec------------CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGG------------LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAND 199 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~------------~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d 199 (724)
.+.+++|+|+ ++.+++++ .++.|.+|+.. .+.....+.. ...+.+++|+ |+.++++ +
T Consensus 82 ~~~~~~~~s~d-----g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~ 153 (337)
T 1pby_B 82 KSLFGAALSPD-----GKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEA-PRQITMLAWARDGSKLYGL-G 153 (337)
T ss_dssp ECTTCEEECTT-----SSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEEC-CSSCCCEEECTTSSCEEEE-S
T ss_pred ccccceEECCC-----CCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEeC-CCCcceeEECCCCCEEEEe-C
Confidence 6788999999 77888775 57899999874 3333344433 3457788898 5666666 6
Q ss_pred CcEEEEEcCCCceEEEecCC
Q 004914 200 AGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~ 219 (724)
+.|.+||+.+++.+..+..+
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~ 173 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQ 173 (337)
T ss_dssp SSEEEEETTTTEEEEEECST
T ss_pred CeEEEEECCCCcEeeeeecc
Confidence 88999999999887766543
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.30 E-value=2.4e-10 Score=118.89 Aligned_cols=186 Identities=9% Similarity=0.046 Sum_probs=126.3
Q ss_pred eEEEEecCCEEEEEeC-CCeEEEEec-CCC---eeEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC-CceE-
Q 004914 57 ASCVAVAERMIALGTH-AGTVHILDF-LGN---QVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DEKM- 128 (724)
Q Consensus 57 i~~~s~~~~~la~g~~-dg~I~i~d~-~~~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~~~- 128 (724)
..+|+++++.+++++. +|.|.+||. ++. .+..+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ +...
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 3468889997766654 899999999 332 23344333 4688999999999888777 899999999987 6543
Q ss_pred ----EEeCC-C-CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCcc---ceEec---cC---CCCeEEEEEe--
Q 004914 129 ----KFDYH-R-PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYR---DQVLH---SG---EGPVHVVKWR-- 190 (724)
Q Consensus 129 ----~~~~~-~-~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~---~~~l~---~~---~~~V~~l~~~-- 190 (724)
....+ . .+.+++|+|+ ++.+ +++..++.+.+|+..-.... ...+. .. ...+.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pd-----g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPN-----EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTT-----SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred ecccccccCCCCCcceEEECCC-----CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 22322 2 7889999999 6755 55568899999987421111 11121 11 2356689999
Q ss_pred CCEEEE-E-cCCcEEEEEcC--CC--ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 191 TSLIAW-A-NDAGVKVYDAA--ND--QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 191 ~~~la~-~-~d~~i~i~d~~--~~--~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
|+.+++ . .++.|.+|++. ++ +.+..+.... .+..++| +++..|+++ .++.|.+|++..
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-------ccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 566654 4 58899999998 33 3333433321 2556888 677777777 478999998874
No 146
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.30 E-value=2.1e-10 Score=127.62 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=135.9
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec---CCCeeEEEcCCccceeEEEEcC----CCCEEEEEeC-CCCEEEEeccCCceE-
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF---LGNQVKEFPAHTAAVNDLSFDV----DGEYVGSCSD-DGSVVINSLFTDEKM- 128 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~---~~~~~~~~~~h~~~V~~l~~s~----~g~~l~s~~~-Dg~v~iwd~~~~~~~- 128 (724)
.+++|+|+++++++.+++|.+||+ ++..+..+.. ...+.+++|+| +|+++++++. +++|.+||..++++.
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce
Confidence 458899999999999999999999 4455666664 44679999999 9999988884 899999999887654
Q ss_pred EEeC-----------CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--EeccCCCCeEEEEEe--CC
Q 004914 129 KFDY-----------HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSGEGPVHVVKWR--TS 192 (724)
Q Consensus 129 ~~~~-----------~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~~~~~~V~~l~~~--~~ 192 (724)
.+.. .. .+.++.++|+ +...+++...+|.|.+|+..- ..... .+ .+...+..+.|+ |+
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~----~~~~~vs~~~~g~i~vvd~~~-~~~l~~~~i-~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHE----HPEFIVNVKETGKVLLVNYKD-IDNLTVTSI-GAAPFLHDGGWDSSHR 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEECTT-SSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred eecccCcccCccccccCCceEEEEECCC----CCEEEEEECCCCeEEEEEecC-CCcceeEEe-ccCcCccCceECCCCC
Confidence 3332 12 6889999997 356777888899999998752 22222 23 244567788998 66
Q ss_pred EEE-EE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecC-CCeEEEE--eCCeEEEEEEeeC
Q 004914 193 LIA-WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 193 ~la-~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g--~d~~i~vw~~~~~ 256 (724)
++. ++ .+++|.+||..+++++..+..... .|......+..++ +..++++ .+++|.+|++.+.
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~--ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKT--PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSS--BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCC--CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 554 44 478999999999999888764321 1111111222244 5666776 4689999999763
No 147
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.30 E-value=3e-08 Score=115.88 Aligned_cols=515 Identities=14% Similarity=0.133 Sum_probs=289.9
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCC-eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCC---
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYH--- 133 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~--- 133 (724)
++|..+.||.-. ..++.|||+..+ .++.+.- ..+|.--.|-.... |+-.+ +..|..|++.+ .+...+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 778888887765 789999999443 3444433 34576666654443 33333 45799999965 222222222
Q ss_pred -C-CeeEEEeCCCCCCCCCCEEEEec-------CCCeEEEEecccCCccceEeccCCCCeEEEEEeC-----CEEEEEc-
Q 004914 134 -R-PMKAISLDPDYTRKMSRRFVAGG-------LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-----SLIAWAN- 198 (724)
Q Consensus 134 -~-~v~~v~~~p~~~~~~~~~l~~g~-------~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-----~~la~~~- 198 (724)
. .|..-..+++ .++++..| ..|.+.+|+.. ....+.+.+|.+....+...| .+++.+.
T Consensus 149 ~~~QIinY~~d~~-----~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 149 AGCQIINYRTDAK-----QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred ccCeeEEeeeCCC-----CCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 2 6666677777 57666433 34777887664 344455555554443333331 2333331
Q ss_pred ---CCcEEEEEcCCC---ceE-----EEecCCCCCCCCCCCCCceeec--CCCeEEEEeCCeEEEEEEeeCCCCCCCCcc
Q 004914 199 ---DAGVKVYDAAND---QRI-----TFIERPRGSPRPELLLPHLVWQ--DDTLLVIGWGTYIKIASIKTNQSNVANGTY 265 (724)
Q Consensus 199 ---d~~i~i~d~~~~---~~~-----~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~ 265 (724)
.+.+.|.++... ... ..+..|.. ....++-.+..+ -|-.+++...|.|.++|+.++.....+.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~--~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-- 297 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-- 297 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcc--cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc--
Confidence 256777777432 100 00111110 111222222221 2334455577777777777654321100
Q ss_pred ccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCC
Q 004914 266 RHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVL 345 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~ 345 (724)
....-++++..
T Consensus 298 -------------------------is~~~iF~~~~-------------------------------------------- 308 (1630)
T 1xi4_A 298 -------------------------ISGETIFVTAP-------------------------------------------- 308 (1630)
T ss_pred -------------------------ccCCceEEecc--------------------------------------------
Confidence 00011111110
Q ss_pred ccccccccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchhhHHHHHh-cccHHHHHHHHHhcCCCch
Q 004914 346 GFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLE-HGWHEKALAAVEAGQGRSE 424 (724)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i~~ll~-~~~~~~Al~~~~~~~~~~~ 424 (724)
. ...+-++.+..++.+.....+....|..... .++-+.|+.+|.+...++
T Consensus 309 ----------------~------------~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpG- 359 (1630)
T 1xi4_A 309 ----------------H------------EATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG- 359 (1630)
T ss_pred ----------------C------------CCCCceEEEcCCceEEEEEEccchhhhhHhhccCCHHHHHHHHHhcCCCC-
Confidence 0 0111133344444444445555555555443 467889999998876643
Q ss_pred hHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcC----CCCcccccCcC--CCCCCCHHHHHHHHH
Q 004914 425 LLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLR----QLPVLVPYMPT--ENPRLRDTAYEVALV 498 (724)
Q Consensus 425 ~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~----~l~~L~~~l~~--~~~~l~~~~~~~~L~ 498 (724)
-+.+..+..+.||..|+|.+||+++..-=++ .+.=-+.|.||-... +...|.-|.-+ ...+|+..----+..
T Consensus 360 -ad~l~~~~F~~l~~~g~y~~AA~~aa~sp~g-iLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r 437 (1630)
T 1xi4_A 360 -AEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCR 437 (1630)
T ss_pred -chhHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 2468888899999999999999965543111 111135677887643 33444445444 123444211111111
Q ss_pred HHHcCCccHHHHHHHhhcCC--CCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHcCCch-hhH
Q 004914 499 ALATNPSFHKYLLSTVKSWP--PVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFD 575 (724)
Q Consensus 499 ~~l~~~~~~~~~~~~i~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~ 575 (724)
.-+.. .-.+++.+|- ..|.-.+.+-..+... -...+..+|.+-+-|.||+.|+.+.+.-+ +..
T Consensus 438 ~vl~q-----~r~~lle~Wl~e~KL~~SEeLGDlv~~~---------d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~ 503 (1630)
T 1xi4_A 438 PVLQQ-----GRKQLLEKWLKEDKLECSEELGDLVKSV---------DPTLALSVYLRANVPNKVIQCFAETGQVQKIVL 503 (1630)
T ss_pred HHHHh-----chHHHHHHHHHhCCccccHHHHHHHHhc---------ChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHH
Confidence 12221 1122333441 1111112222222221 22344557999999999999999998855 999
Q ss_pred HHHhcCChHHHHHHHHHHHccChhHHHHHhh---hcC-CCCChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChh
Q 004914 576 FIENHNLHDAIREKVVQLMLLDCKRAVSLLI---QNK-DLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKD 651 (724)
Q Consensus 576 ~i~~~~l~~~~~~~~~~L~~~~~~~~~~ll~---~~~-~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~ 651 (724)
|.++-+....+..-+..++..+|+.++++.. ... ..+++..|++.|.+. ++.+....||-.....+......
T Consensus 504 Y~~~~~~~pDy~~ll~~~~~~~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~----~~iq~~t~fLld~lk~n~~e~~~ 579 (1630)
T 1xi4_A 504 YAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEY----NLIQQCTAFLLDALKNNRPSEGP 579 (1630)
T ss_pred HHhccCCCccHHHHHHHHhhcChHHHHHHHHHHhcCCCCccCHHHHHHHHHhc----CcHHHHHHHHHHHHhCCChhhhh
Confidence 9998876666667777888899998776543 332 467899999999864 45556667776666666655668
Q ss_pred hHHHHHHHHHhcchhhhHHHhhhc--CCCCHHHHHHHHhcCCCchhHHHHHhccCChH
Q 004914 652 FHDMQVELYADYDLKMLLPFLRSS--QHYTLEKAYEICVKRDLLREQVFILGRMGNTK 707 (724)
Q Consensus 652 ~~~~lv~Ly~~~~~~~ll~fL~~~--~~y~~~~al~~c~~~~~~~e~v~Ll~k~g~~~ 707 (724)
..+.++|+-....|.=.=..|... ++||-.+.-.+|++.|++.-..=.|.-+-+.+
T Consensus 580 LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dik 637 (1630)
T 1xi4_A 580 LQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIK 637 (1630)
T ss_pred HhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHH
Confidence 899999998888887555666663 68998888888888776665555554433333
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.27 E-value=3.2e-10 Score=118.56 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=135.5
Q ss_pred EEEEecCCEEEEEeC-------CCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE
Q 004914 58 SCVAVAERMIALGTH-------AGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 58 ~~~s~~~~~la~g~~-------dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.+++++++.+++++. ++.|.+||. +++.+..+.. ...+.+++|+|+|+++ +++..++.|.+||..+++..
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK 124 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE
Confidence 368899988887774 578999999 5555555543 3457889999999955 45566899999999987764
Q ss_pred -EEeCCC----------CeeEEEeCCCCCCCCCCEEEEec--CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCE
Q 004914 129 -KFDYHR----------PMKAISLDPDYTRKMSRRFVAGG--LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSL 193 (724)
Q Consensus 129 -~~~~~~----------~v~~v~~~p~~~~~~~~~l~~g~--~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~ 193 (724)
.+..+. .+.+++|+|+ ++.+++++ .++.|.+|+.. .+.....+..+...+.+++|+ |+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDA-----TNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETT-----TTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred EEEecCCCccccccCCCCCceEEECCC-----CCEEEEEecCCCceEEEEcCC-CCceEEEecCCCCccceEEECCCCCE
Confidence 444432 1788999999 67666654 57889999875 344445555344557788998 677
Q ss_pred EEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 194 IAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
++++ .++.+.+||..+++.+..+..... .+...+..++| +++..++++ .++.|.+||+.++.
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDD--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCS--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCC--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 7666 688999999999998877665321 12223455778 567766665 45899999986543
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.26 E-value=1.2e-10 Score=135.50 Aligned_cols=187 Identities=12% Similarity=0.135 Sum_probs=134.3
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCC---eeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGN---QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~---~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (724)
.+|+|+|++|++++. +.|++||..+. ....+..|...+.+++|+|||++|++++. +.|++||+.++....+....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCC
Confidence 369999999999887 99999999665 66677788889999999999999999884 69999999988766543322
Q ss_pred --C----------------eeEEEeCCCCCCCCCCEEEEecCCC---------------------------------eEE
Q 004914 135 --P----------------MKAISLDPDYTRKMSRRFVAGGLAG---------------------------------HLY 163 (724)
Q Consensus 135 --~----------------v~~v~~~p~~~~~~~~~l~~g~~dg---------------------------------~v~ 163 (724)
. +.+++|+|+ |+.|++++.|+ .+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpD-----g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPD-----DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTT-----SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccceeccccceeeeeccccccceEECCC-----CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 2 478999999 88888887654 566
Q ss_pred EEecccC-CccceEec--cCCCCeEEEEEe-CCEEEEE-c-----CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCcee
Q 004914 164 LNSKKWL-GYRDQVLH--SGEGPVHVVKWR-TSLIAWA-N-----DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLV 233 (724)
Q Consensus 164 l~~~~~~-~~~~~~l~--~~~~~V~~l~~~-~~~la~~-~-----d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~ 233 (724)
+|+.. . +....... .+...+.+++|. |+.|+++ . +..|++||+.+++....+..+.... ...+..+.
T Consensus 267 ~~d~~-~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~~~ 343 (741)
T 2ecf_A 267 VISPA-EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW--VPLHNSLR 343 (741)
T ss_dssp EECSS-TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC--CCCCSCCE
T ss_pred EEECC-CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc--CCcCCceE
Confidence 66653 2 22222221 356678888883 4666654 2 3569999999988776554332110 00234677
Q ss_pred e-cCCCeEEEE-eCCeEEEEEEe
Q 004914 234 W-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 234 ~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
| ++++.++++ .++.+++|.+.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEEC
T ss_pred ECCCCeEEEEecCCCccEEEEEc
Confidence 8 677777777 77778888876
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.25 E-value=1.4e-09 Score=113.69 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=126.7
Q ss_pred EEEEecCCEEEEEeC---CCeEEEEecCCCe---eEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC-CceE-
Q 004914 58 SCVAVAERMIALGTH---AGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DEKM- 128 (724)
Q Consensus 58 ~~~s~~~~~la~g~~---dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~~~- 128 (724)
.+++|+|+ +++++. ++.|.+|++.+.. +..+..+...+..++|+|+|++|++++ .++.|.+|++.. +...
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 47899999 554443 6899999994433 344455777889999999999888887 689999999963 3332
Q ss_pred --EEeCC---------C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce--EeccC-CCCeEEEEEe--C
Q 004914 129 --KFDYH---------R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSG-EGPVHVVKWR--T 191 (724)
Q Consensus 129 --~~~~~---------~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~l~~~-~~~V~~l~~~--~ 191 (724)
.+... . .+.+++|+|+ ++.++++..++.+.+|+..-.+.... .+... ...+..++|+ |
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spd-----g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPD-----NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTT-----SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred cceeecCCCCCCccccCCCceEEEECCC-----CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 22221 1 3889999999 77777777888999998752232211 11222 2356789999 6
Q ss_pred CEEEEE--cCCcEEEEEcCC--CceE--EEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 192 SLIAWA--NDAGVKVYDAAN--DQRI--TFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 192 ~~la~~--~d~~i~i~d~~~--~~~~--~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
++++++ .++.+.+|++.. ++.. ..+............+..++| ++++.|+++ .++.|.+|++..
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 755554 478899999874 4432 222222111111123556788 677766444 578999999974
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.23 E-value=1.1e-09 Score=114.29 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred EEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCc-cceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHT-AAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~-~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
++++++.++++++.++.|.+||.. ++.+..+..+. ..+..++|+|+|+++ ++++.++.|.+||+.+++.. .+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 456678899999999999999994 55556665443 257889999999865 45567899999999987654 344322
Q ss_pred -------CeeEEEeCCCCCCCCCCEEEEecCC------------CeEEEEecccCCc---cceEeccCCCCeEEEEEe--
Q 004914 135 -------PMKAISLDPDYTRKMSRRFVAGGLA------------GHLYLNSKKWLGY---RDQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 135 -------~v~~v~~~p~~~~~~~~~l~~g~~d------------g~v~l~~~~~~~~---~~~~l~~~~~~V~~l~~~-- 190 (724)
.+.+++|+|+ ++.+++++.+ +.+.+|+.. .+. ...... +...+.+++|+
T Consensus 86 ~~~~~~~~~~~~~~spd-----g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPD-----GKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp STTEEEECSSCEEECTT-----SSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred ccccccccccceEECCC-----CCEEEEEcccccccccccccCCCeEEEEECC-Cccccceeeecc-CCCcccceeECCC
Confidence 3889999999 8888888765 899999875 222 222222 33457888998
Q ss_pred CCEEEEEcCCcEEEEEcCCCceEEEecCC
Q 004914 191 TSLIAWANDAGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 191 ~~~la~~~d~~i~i~d~~~~~~~~~i~~~ 219 (724)
|++++ + ++.|.+||..+++.+..+...
T Consensus 159 g~l~~-~-~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 159 GSLYV-A-GPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp SCEEE-E-SSSEEEECTTTCCEEEEECST
T ss_pred CcEEE-c-cCcEEEEeCCCCceecccccc
Confidence 67433 3 345999999999887766543
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.22 E-value=1.5e-09 Score=113.38 Aligned_cols=188 Identities=10% Similarity=0.113 Sum_probs=125.3
Q ss_pred eEEEEecCCEEEEEe-CCCeEEEEecC--CCe--eEEEcC---------CccceeEEEEcCCCCEEEEEeCCCCEEEEec
Q 004914 57 ASCVAVAERMIALGT-HAGTVHILDFL--GNQ--VKEFPA---------HTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 57 i~~~s~~~~~la~g~-~dg~I~i~d~~--~~~--~~~~~~---------h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~ 122 (724)
-.+++++|+++++++ .+|.|.+|++. +.. +..+.. +...+.+++|+|+|+.+++...++.|.+|++
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 346899999888877 68999999984 222 222221 1224888999999997677777899999999
Q ss_pred c-CCceEE---EeCCC--CeeEEEeCCCCCCCCCCE-EEEecCCCeEEEEecccCCcc---ceEeccCC------CCeEE
Q 004914 123 F-TDEKMK---FDYHR--PMKAISLDPDYTRKMSRR-FVAGGLAGHLYLNSKKWLGYR---DQVLHSGE------GPVHV 186 (724)
Q Consensus 123 ~-~~~~~~---~~~~~--~v~~v~~~p~~~~~~~~~-l~~g~~dg~v~l~~~~~~~~~---~~~l~~~~------~~V~~ 186 (724)
. ++.+.. +.... .+..++|+|+ ++. ++++..++.+.+|+....... ...+.... ..+.+
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spd-----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPD-----GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA 244 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTT-----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCC-----CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence 8 455432 22222 6788999999 774 455677889999976531111 11222211 45788
Q ss_pred EEEe--CCEEEEE--cCCcEEEEEcCCC---ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 187 VKWR--TSLIAWA--NDAGVKVYDAAND---QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 187 l~~~--~~~la~~--~d~~i~i~d~~~~---~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
++|+ |++++++ .++.|.+|++... +.+..+..+. ..+..++| ++++.|+++ .++.|.+|++..
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS------SCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 9999 6766444 4789999999732 3333433321 23557888 678877777 458899998854
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.22 E-value=2.6e-10 Score=131.72 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=130.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-----CceEEEeCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-----DEKMKFDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-----~~~~~~~~~ 133 (724)
+|+|+ +.++++ .++.|++||..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++...+...
T Consensus 88 ~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 88 LDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp EETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred EECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC
Confidence 57788 666555 4599999999766666666777889999999999999985 679999999998 776554332
Q ss_pred C-C---------------eeEEEeCCCCCCCCCCEEEEec---------------------------------CCCeEEE
Q 004914 134 R-P---------------MKAISLDPDYTRKMSRRFVAGG---------------------------------LAGHLYL 164 (724)
Q Consensus 134 ~-~---------------v~~v~~~p~~~~~~~~~l~~g~---------------------------------~dg~v~l 164 (724)
. . +.+++|+|+ |+.|++++ .++.+.+
T Consensus 165 ~~~~~~~g~~~~~ee~~~~~~~~~SpD-----g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 165 GTETLVYGQAVHQREFGIEKGTFWSPK-----GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp CBTTEEESSCCGGGCTTCCCSEEECTT-----SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred CCCCeEcccchhhhhcCCCceEEECCC-----CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 2 2 589999999 89998887 3356888
Q ss_pred EecccCCccceEe--ccCCCCeEEEEEe--CCEEEEE-cCC-----cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee
Q 004914 165 NSKKWLGYRDQVL--HSGEGPVHVVKWR--TSLIAWA-NDA-----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (724)
Q Consensus 165 ~~~~~~~~~~~~l--~~~~~~V~~l~~~--~~~la~~-~d~-----~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (724)
|+.. .+...... ..+...+.+++|+ |+.++++ .++ .|++||+.+++....+...... .....+..+.|
T Consensus 240 ~d~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 317 (706)
T 2z3z_A 240 YHLA-TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK-HYVEPLHPLTF 317 (706)
T ss_dssp EETT-TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS-SCCCCCSCCEE
T ss_pred EECC-CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC-CeECccCCcee
Confidence 7764 23222222 1355678999999 6766665 454 7999999988433332211111 00011345678
Q ss_pred -c--CCCeEEEE-eCCeEEEEEEe
Q 004914 235 -Q--DDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 235 -~--~~~~l~~g-~d~~i~vw~~~ 254 (724)
+ ++..++++ .++.+++|.+.
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEE
Confidence 5 77888877 77889999987
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.21 E-value=2.5e-10 Score=137.85 Aligned_cols=184 Identities=11% Similarity=0.161 Sum_probs=141.6
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-----------CccceeEEEEc-CCCCEEEEEeCCCCEEEEeccC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-----------HTAAVNDLSFD-VDGEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-----------h~~~V~~l~~s-~~g~~l~s~~~Dg~v~iwd~~~ 124 (724)
..+|+|+|+.++++ .++.|++|+..+..+..+.. |...|.+++|+ |+|+++++++ ++.+.+|+..+
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 45799999999888 58999999986555555544 44579999999 9999999888 78999999998
Q ss_pred CceEEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEE-EEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-c
Q 004914 125 DEKMKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLY-LNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N 198 (724)
Q Consensus 125 ~~~~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~-l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~ 198 (724)
+....+..+. .+.+++|+ + ++.+++++.++.+. +|+.. +.....+..+...+.+++|+ |+.++++ .
T Consensus 327 ~~~~~~~~~~~~~~~~~~~s-d-----g~~l~~~s~~~~l~~~~d~~--~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 327 TYVLKVPEPLRIRYVRRGGD-T-----KVAFIHGTREGDFLGIYDYR--TGKAEKFEENLGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp SBEEECSCCSCEEEEEECSS-S-----EEEEEEEETTEEEEEEEETT--TCCEEECCCCCCSEEEEEECTTSSEEEEEET
T ss_pred CceEEccCCCcceEEeeeEc-C-----CCeEEEEECCCceEEEEECC--CCCceEecCCccceeeeEECCCCCEEEEECC
Confidence 8776665544 78899999 8 78888888877777 77654 33334444677889999999 6777776 6
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC----------eEEEEEEeeC
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT----------YIKIASIKTN 256 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~----------~i~vw~~~~~ 256 (724)
++.|++||+.+++.......+. ..+..++| ++++.|+++ .++ .|++||+.++
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~------~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSRE------AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSS------SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCeEEEEECCCCceEEeccCCC------CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 8899999999988776654332 23567888 688888777 433 8999998654
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.20 E-value=2.6e-10 Score=137.69 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=143.7
Q ss_pred eEEEE-ecCCEEEEEeCCCeEEEEecCCCeeEEEcCCcc-ceeEEEEcCCCCEEEEEeCCCCEE-EEeccCCceEEEeCC
Q 004914 57 ASCVA-VAERMIALGTHAGTVHILDFLGNQVKEFPAHTA-AVNDLSFDVDGEYVGSCSDDGSVV-INSLFTDEKMKFDYH 133 (724)
Q Consensus 57 i~~~s-~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~-~V~~l~~s~~g~~l~s~~~Dg~v~-iwd~~~~~~~~~~~~ 133 (724)
..+|+ |+|+.+++++ ++.|++|+..+.....+..|.. .+.+++|+ +|+.+++++.++.+. +|++.++....+..+
T Consensus 300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~ 377 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEEN 377 (1045)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCC
T ss_pred eeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCC
Confidence 34699 9999999888 8899999997666666777887 89999999 999999999988888 999988877766666
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cC----------
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND---------- 199 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d---------- 199 (724)
. .+.+++|+|+ ++.+++++.++.+++|+.. .+........+.+.+.+++|+ |++++++ .+
T Consensus 378 ~~~~~~~~~SpD-----G~~la~~~~~~~v~~~d~~-tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 378 LGNVFAMGVDRN-----GKFAVVANDRFEIMTVDLE-TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp CCSEEEEEECTT-----SSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred ccceeeeEECCC-----CCEEEEECCCCeEEEEECC-CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 5 8999999999 8999999999999999885 455555555788889999999 6777766 43
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEe
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (724)
+.|++||+.+++ ...+..+ ......+.| ++++.|+++ .++...+|+..
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~------~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTE------NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCS------SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CeEEEEECCCCc-EEEeeCC------CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 379999999887 3333222 223455778 678878777 55666667543
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.19 E-value=8.2e-10 Score=115.15 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=124.2
Q ss_pred eEEEEecCCEE-EEEeCCCeEEEEecC-CCeeEEEcCC------ccceeEEEEcCCCCEEEEEeCC------------CC
Q 004914 57 ASCVAVAERMI-ALGTHAGTVHILDFL-GNQVKEFPAH------TAAVNDLSFDVDGEYVGSCSDD------------GS 116 (724)
Q Consensus 57 i~~~s~~~~~l-a~g~~dg~I~i~d~~-~~~~~~~~~h------~~~V~~l~~s~~g~~l~s~~~D------------g~ 116 (724)
..+++++|+.+ +++..++.|.+||.. +..+..+..+ ...+.+++|+|+|+++++++.+ +.
T Consensus 47 ~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 126 (349)
T 1jmx_B 47 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 126 (349)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe
Confidence 34688999865 455678999999995 5545555432 2347889999999999988865 89
Q ss_pred EEEEeccCCce----EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC-----------
Q 004914 117 VVINSLFTDEK----MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE----------- 181 (724)
Q Consensus 117 v~iwd~~~~~~----~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~----------- 181 (724)
|.+||+.+++. .....+..+.+++|+|+ ++ +++++. .+.+|+.. .+.....+..+.
T Consensus 127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~-l~~~~~--~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 127 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-----GS-LYVAGP--DIYKMDVK-TGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp EEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-----SC-EEEESS--SEEEECTT-TCCEEEEECSTTCCCTTBCCCBC
T ss_pred EEEEECCCccccceeeeccCCCcccceeECCC-----Cc-EEEccC--cEEEEeCC-CCceeccccccccCCccccCccc
Confidence 99999987432 23344447889999999 67 555544 48888753 232222222110
Q ss_pred ---------------------------------------------------------CCeEEEEEe---CCEEEEEcCCc
Q 004914 182 ---------------------------------------------------------GPVHVVKWR---TSLIAWANDAG 201 (724)
Q Consensus 182 ---------------------------------------------------------~~V~~l~~~---~~~la~~~d~~ 201 (724)
..+.+++|+ |++++++ ++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~ 276 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNR 276 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESE
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCe
Confidence 123344443 4566666 789
Q ss_pred EEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 202 i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
|.+||+.+++.+..+..+. .+..++| +++..|+++ .++.|++||+.++
T Consensus 277 v~~~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 277 LAKYDLKQRKLIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEETTTTEEEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEEECccCeEEEEEcCCC-------CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 9999999998887765432 2446788 566777777 7899999998654
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.17 E-value=4.2e-10 Score=126.90 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=122.0
Q ss_pred EEEEecCCEEEEEeC-CCeEEEEecCCCeeEEEcCCc-cceeEEEEcCCCCEEEEEeC---CCCEEEE------------
Q 004914 58 SCVAVAERMIALGTH-AGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSD---DGSVVIN------------ 120 (724)
Q Consensus 58 ~~~s~~~~~la~g~~-dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~---Dg~v~iw------------ 120 (724)
.+++|||+.||+++. +|++.||++.+.....+..|. ..|.+++|+|+ +.+++++. +....+|
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~ 105 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR 105 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc
Confidence 358899999999887 999999998666555555554 46777777776 55555543 3333443
Q ss_pred --------------------------------eccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCC----CeEEE
Q 004914 121 --------------------------------SLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLA----GHLYL 164 (724)
Q Consensus 121 --------------------------------d~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~d----g~v~l 164 (724)
|+.+++...+..+.. .+++|+|+ |+.+++++.+ +.|.+
T Consensus 106 l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spD-----G~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 106 LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIR-----GDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEE-----TTEEEEEEEEETTEEEEEE
T ss_pred ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCC-----CCEEEEEEEcCCCCeEEEE
Confidence 332222222211112 67888998 8999987766 66777
Q ss_pred EecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCC--cEEEEEcCCCceEEEecCCCCCCCCCCCCCcee------
Q 004914 165 NSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA--GVKVYDAANDQRITFIERPRGSPRPELLLPHLV------ 233 (724)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~--~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~------ 233 (724)
|+.. +.....+..+.+.+.+++|+ |+.|+++ .++ .|++||+.+++.. .+..+. ..+..+.
T Consensus 180 ~d~~--~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~------~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 180 SNLS--SGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS------KDFSSYRPTAITW 250 (582)
T ss_dssp EETT--TCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC------SHHHHHCCSEEEE
T ss_pred EcCC--CCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC------cChhhhhhccccc
Confidence 7753 34455677788889999999 7888866 466 7999999988876 433222 2233455
Q ss_pred --e-cCCCeEEEE-eCCeEEEEEE
Q 004914 234 --W-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 234 --~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
| +++.+++++ .++.+++|++
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8 677777777 8999999998
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.17 E-value=5.8e-10 Score=128.80 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=132.4
Q ss_pred eEEEEecCCEEEEEe---------------------------------CCCeEEEEecCCCeeEEEc---CCccceeEEE
Q 004914 57 ASCVAVAERMIALGT---------------------------------HAGTVHILDFLGNQVKEFP---AHTAAVNDLS 100 (724)
Q Consensus 57 i~~~s~~~~~la~g~---------------------------------~dg~I~i~d~~~~~~~~~~---~h~~~V~~l~ 100 (724)
..+|+|+|++|++++ .++.|++||..+.....+. .|...+.+++
T Consensus 185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 457999999999987 4578999999665543332 4677899999
Q ss_pred EcCCCCEEEEEeCCC-----CEEEEeccCC-ceEEEe--CCC----CeeEEEeCC--CCCCCCCCEEEEecCCCeEEEEe
Q 004914 101 FDVDGEYVGSCSDDG-----SVVINSLFTD-EKMKFD--YHR----PMKAISLDP--DYTRKMSRRFVAGGLAGHLYLNS 166 (724)
Q Consensus 101 ~s~~g~~l~s~~~Dg-----~v~iwd~~~~-~~~~~~--~~~----~v~~v~~~p--~~~~~~~~~l~~g~~dg~v~l~~ 166 (724)
|+|+|++|++++.++ .|++||+.++ ....+. .+. .+.+++|+| + ++.+++++.+|.+.+|.
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d-----g~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN-----NQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS-----SEEEEEECTTSSCEEEE
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC-----CEEEEEEccCCccEEEE
Confidence 999999999988776 8999999988 444332 121 347889999 8 78899999999999997
Q ss_pred cccCCccceEeccCCCCeEE-EEEe--CCEEE-EEc-CC----cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cC
Q 004914 167 KKWLGYRDQVLHSGEGPVHV-VKWR--TSLIA-WAN-DA----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QD 236 (724)
Q Consensus 167 ~~~~~~~~~~l~~~~~~V~~-l~~~--~~~la-~~~-d~----~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~ 236 (724)
....+.....+..+...+.+ ++|+ |+.++ +++ ++ .|..||..+++. ..+.. ...+..++| ++
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-------~~~~~~~~~spd 411 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLTP-------ESGMHRTQLSPD 411 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESCC-------SSSEEEEEECTT
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eeccC-------CCceEEEEECCC
Confidence 75455666667777777876 7898 55554 444 33 466667666653 22221 112456778 57
Q ss_pred CCeEEEE-eC----CeEEEEEEeeC
Q 004914 237 DTLLVIG-WG----TYIKIASIKTN 256 (724)
Q Consensus 237 ~~~l~~g-~d----~~i~vw~~~~~ 256 (724)
++.++.+ .+ +.|++||+.++
T Consensus 412 g~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 412 GSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp SSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCEEEEEecCCCCCcEEEEEECCCC
Confidence 7777766 33 45999998654
No 159
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.14 E-value=1.1e-09 Score=126.83 Aligned_cols=181 Identities=11% Similarity=0.059 Sum_probs=122.9
Q ss_pred EEEEecCCEEEEEeCC---------CeEEEEecCCCeeEEEc---CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCC
Q 004914 58 SCVAVAERMIALGTHA---------GTVHILDFLGNQVKEFP---AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d---------g~I~i~d~~~~~~~~~~---~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~ 125 (724)
.+|||+|++|++++.+ +.+++||..+.....+. .|...+.+++|||||+.|++++. +.|++||+.++
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 4699999999999764 78899999554434443 35556889999999999999886 79999999987
Q ss_pred ceEEEeCC-C-Ce------------------eEEEeCCCCCCCCCCEEEEecCCC-------------------------
Q 004914 126 EKMKFDYH-R-PM------------------KAISLDPDYTRKMSRRFVAGGLAG------------------------- 160 (724)
Q Consensus 126 ~~~~~~~~-~-~v------------------~~v~~~p~~~~~~~~~l~~g~~dg------------------------- 160 (724)
....+... . .+ .+++|+|+ |+.|++++.++
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-----g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-----GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-----SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-----CCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 76654332 2 33 78999999 88888886543
Q ss_pred ---------eEEEEecccCCccceEeccC------CCCeEEEEEe--CCEEEEE-cC----CcEEEEEcCCCceEEEecC
Q 004914 161 ---------HLYLNSKKWLGYRDQVLHSG------EGPVHVVKWR--TSLIAWA-ND----AGVKVYDAANDQRITFIER 218 (724)
Q Consensus 161 ---------~v~l~~~~~~~~~~~~l~~~------~~~V~~l~~~--~~~la~~-~d----~~i~i~d~~~~~~~~~i~~ 218 (724)
.+.+|+.. .+.....+..+ ...+.+++|+ |++++.. .. ..|++||+.+++....+..
T Consensus 220 ~~G~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLN-GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp BTTSCCCEEEEEEEESS-SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCCeeEEEEEECC-CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 67777764 23323444433 5678899999 6777554 22 4699999999887655432
Q ss_pred CCCCCCCCCCCCceee-cCCCeEEE--E-eCC
Q 004914 219 PRGSPRPELLLPHLVW-QDDTLLVI--G-WGT 246 (724)
Q Consensus 219 ~~~~~~~~~~~~~l~~-~~~~~l~~--g-~d~ 246 (724)
..... .......+.| ++++.|+. + .++
T Consensus 299 ~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 299 ESEAW-LHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp ECSSC-CCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ccCCE-EeccCCCceEcCCCCeEEEEEecccC
Confidence 21110 0000135678 57776654 3 555
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.12 E-value=8.7e-10 Score=128.01 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=127.9
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccc-----eeEEEEcCCCCEEEEEeCC---------CCEEEEec
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAA-----VNDLSFDVDGEYVGSCSDD---------GSVVINSL 122 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~-----V~~l~~s~~g~~l~s~~~D---------g~v~iwd~ 122 (724)
..|+++|++++++ +|.|++||. ++.....+.+|... ..+++|||||++|++++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999999886 899999999 55555666666532 3448899999999998876 56779999
Q ss_pred cCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCC-----------------
Q 004914 123 FTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGP----------------- 183 (724)
Q Consensus 123 ~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~----------------- 183 (724)
.++++..+..+. .+..++|||+ |+.++.+. ++.|++|+.. .+...... .++...
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~SPd-----G~~la~~~-~~~i~~~~~~-~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 100 NKRQLITEERIPNNTQWVTWSPV-----GHKLAYVW-NNDIYVKIEP-NLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp TTTEECCSSCCCTTEEEEEECSS-----TTCEEEEE-TTEEEEESST-TSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred CCCcEEEcccCCCcceeeEECCC-----CCEEEEEE-CCeEEEEECC-CCceEEEcCCCCccceecCcccccccchhcCC
Confidence 999887776666 8999999999 88888884 6789998763 23222211 122222
Q ss_pred eEEEEEe--CCEEEEE-c-CC-----------------------------------cEEEEEcCC---Cc--eEEEecCC
Q 004914 184 VHVVKWR--TSLIAWA-N-DA-----------------------------------GVKVYDAAN---DQ--RITFIERP 219 (724)
Q Consensus 184 V~~l~~~--~~~la~~-~-d~-----------------------------------~i~i~d~~~---~~--~~~~i~~~ 219 (724)
..++.|+ |+.|+.+ . ++ .+++||+.+ ++ ....+..+
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 2358898 6777765 2 22 356677666 52 11222221
Q ss_pred CCCCCCCCCCCceee-cCCCeEEEE-eC----CeEEEEEEeeCC
Q 004914 220 RGSPRPELLLPHLVW-QDDTLLVIG-WG----TYIKIASIKTNQ 257 (724)
Q Consensus 220 ~~~~~~~~~~~~l~~-~~~~~l~~g-~d----~~i~vw~~~~~~ 257 (724)
.....+..++..+.| ++++.++.. .. ..|++||+.++.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 100024456778899 677756554 22 259999998865
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.12 E-value=3.9e-08 Score=103.22 Aligned_cols=188 Identities=7% Similarity=0.005 Sum_probs=121.8
Q ss_pred EEEEecCCEEEEEeCC----CeEEEEecCC--Ce---eEEEcCCccceeEEEEcCCCCEEEEEe-CCCCEEEEeccC-Cc
Q 004914 58 SCVAVAERMIALGTHA----GTVHILDFLG--NQ---VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DE 126 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d----g~I~i~d~~~--~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~ 126 (724)
.+++|+|++|++++.+ |.|.+|+++. .. +.....+......+++ +|+++++++ .++.|.+|++.. +.
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 5789999999888875 8999998833 22 2334445556777787 788777766 588999999975 22
Q ss_pred eE---E-E--eCC--------C-CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecccCCc----c-c-------eEec
Q 004914 127 KM---K-F--DYH--------R-PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGY----R-D-------QVLH 178 (724)
Q Consensus 127 ~~---~-~--~~~--------~-~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~----~-~-------~~l~ 178 (724)
+. . . ... . .+.+++|+|+ ++.+ +++..++.+.+|+..-.+. . . ....
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-----g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-----GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-----SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCC-----CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 21 1 1 111 1 3588999999 7755 4555678999997653222 1 1 1112
Q ss_pred cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCCceE--EEecCCCCCCCCCCCCCceee-cCCCeEEEE-e--CCeE
Q 004914 179 SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQRI--TFIERPRGSPRPELLLPHLVW-QDDTLLVIG-W--GTYI 248 (724)
Q Consensus 179 ~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~~~~--~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~--d~~i 248 (724)
.......+++|+ |++++++ .++.|.+|++.++... ..+.... .+...+..++| ++++.|+++ . ++.|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~---~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT---VNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS---SCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC---CCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 234456889999 6666555 4789999999877542 2222211 11122356788 678877665 4 4789
Q ss_pred EEEEEee
Q 004914 249 KIASIKT 255 (724)
Q Consensus 249 ~vw~~~~ 255 (724)
.+|++..
T Consensus 285 ~v~~~~~ 291 (361)
T 3scy_A 285 AIFKVDE 291 (361)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 9999963
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=134.50 Aligned_cols=184 Identities=14% Similarity=0.215 Sum_probs=122.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCcc---ceeEEEEcCCCCEEEEEeC---------CCCEEEEeccCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTA---AVNDLSFDVDGEYVGSCSD---------DGSVVINSLFTD 125 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~---~V~~l~~s~~g~~l~s~~~---------Dg~v~iwd~~~~ 125 (724)
+|+++|++++ .+.+|.|++||..+.. ...+..|.. .|.+++|||||++|++++. ++.|++||+.++
T Consensus 22 ~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 7999996555 4569999999995544 444444443 3899999999999998876 789999999988
Q ss_pred ce---EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCe-----------------
Q 004914 126 EK---MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPV----------------- 184 (724)
Q Consensus 126 ~~---~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V----------------- 184 (724)
+. ..+ ...+.+++|+|+ |+.++++. ++.|++|+.. .+...... .++...|
T Consensus 101 ~~~~~~~l--~~~~~~~~~SPD-----G~~la~~~-~~~i~~~~~~-~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 101 EFVRGNEL--PRPIQYLCWSPV-----GSKLAYVY-QNNIYLKQRP-GDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp EECCSSCC--CSSBCCEEECSS-----TTCEEEEE-TTEEEEESST-TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ccccceec--CcccccceECCC-----CCEEEEEE-CCeEEEEeCC-CCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 76 333 237889999999 88888885 6799999764 23222221 1122212
Q ss_pred EEEEEe--CCEEEEE-cC-C---------------------------------cEEEEEcCCCceE--EEecCCCCCCCC
Q 004914 185 HVVKWR--TSLIAWA-ND-A---------------------------------GVKVYDAANDQRI--TFIERPRGSPRP 225 (724)
Q Consensus 185 ~~l~~~--~~~la~~-~d-~---------------------------------~i~i~d~~~~~~~--~~i~~~~~~~~~ 225 (724)
.+++|+ |+.|+.+ .| + .|++||+.+++.. ..+..+.....+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 479999 6777766 33 2 6788998877642 122111101123
Q ss_pred CCCCCceee-cCCCeEEEE-eC--C--eEEEEE
Q 004914 226 ELLLPHLVW-QDDTLLVIG-WG--T--YIKIAS 252 (724)
Q Consensus 226 ~~~~~~l~~-~~~~~l~~g-~d--~--~i~vw~ 252 (724)
...+..+.| +++..++++ .. + .|++||
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 345677889 566555554 22 1 377788
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.11 E-value=5.3e-09 Score=119.73 Aligned_cols=191 Identities=12% Similarity=0.048 Sum_probs=129.6
Q ss_pred EEE--ecCCE-EEEEeC-CCeEEEEecC--C-CeeEEEcC-----CccceeEEEEcCCCCEEEEEeCC----------CC
Q 004914 59 CVA--VAERM-IALGTH-AGTVHILDFL--G-NQVKEFPA-----HTAAVNDLSFDVDGEYVGSCSDD----------GS 116 (724)
Q Consensus 59 ~~s--~~~~~-la~g~~-dg~I~i~d~~--~-~~~~~~~~-----h~~~V~~l~~s~~g~~l~s~~~D----------g~ 116 (724)
.|+ |+|+. |++++. ++.|.+++.. | .....+.. |...+.+++|+|||+.|++++.| ..
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 355 89998 776654 5778888877 4 55556655 67789999999999999998877 58
Q ss_pred EEEEeccC------CceEEEe-CCC-CeeEEEeCCCCCCCCCCEEEEecCCC--------eEEEEecccCC---ccceEe
Q 004914 117 VVINSLFT------DEKMKFD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAG--------HLYLNSKKWLG---YRDQVL 177 (724)
Q Consensus 117 v~iwd~~~------~~~~~~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg--------~v~l~~~~~~~---~~~~~l 177 (724)
|++||+.+ +....+. .+. .+.+++|+|+ |+.++.++.++ .|.+|+..-.+ ......
T Consensus 163 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-----G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPD-----GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTT-----SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCccccCCceeEEEecCCCcccCceECCC-----CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 99999988 6666665 545 7888999999 88888776543 67777764123 223333
Q ss_pred ccCCCCeEEEEEe--CCEEEEE-cCC--cEEEEEcCCCceEEEecCCCCCCCCCCC---CCceee-cCCCeEEEEeCCeE
Q 004914 178 HSGEGPVHVVKWR--TSLIAWA-NDA--GVKVYDAANDQRITFIERPRGSPRPELL---LPHLVW-QDDTLLVIGWGTYI 248 (724)
Q Consensus 178 ~~~~~~V~~l~~~--~~~la~~-~d~--~i~i~d~~~~~~~~~i~~~~~~~~~~~~---~~~l~~-~~~~~l~~g~d~~i 248 (724)
..+.+.+..+.|+ |++++++ .++ .|.+||..+++.......+. ......+ ...+.| +++.+++++..+.+
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~ 316 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE-EFAGPLWTPGMRWFAPLANGLIAVVHGKGAA 316 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-BSSCCCCSTTCCSEEECTTSCEEEEEBSSSC
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc-cccCccccccCceEeEeCCCEEEEEEEcCcc
Confidence 4457789999998 6776666 456 46666665666544332221 1111111 234666 46777777733889
Q ss_pred EEEEEee
Q 004914 249 KIASIKT 255 (724)
Q Consensus 249 ~vw~~~~ 255 (724)
++|.+..
T Consensus 317 ~l~~~d~ 323 (662)
T 3azo_A 317 VLGILDP 323 (662)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9997764
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.11 E-value=1.2e-08 Score=103.28 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=129.7
Q ss_pred ecCCEEEEEeC-CCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--CC-Ce
Q 004914 62 VAERMIALGTH-AGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR-PM 136 (724)
Q Consensus 62 ~~~~~la~g~~-dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~-~v 136 (724)
+++++++++.. ++.|.+||.++..+..+.. +...+.+++++++|+.+++.+.++.|.+||........+.. +. .+
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 34555555543 8999999988887766643 44578999999999988888888999999976555555532 23 78
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccC--CCCeEEEEEe--CCEEEEE-cCC-cEEEEEcCCC
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWR--TSLIAWA-NDA-GVKVYDAAND 210 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~--~~~V~~l~~~--~~~la~~-~d~-~i~i~d~~~~ 210 (724)
.+++++|+ ++.+++...++.|.+|+.. +.....+... ...+.+++++ |.++++. .++ .|.+|+. .+
T Consensus 167 ~~i~~~~~-----g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVNDK-----QEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECSS-----SEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred EEEEECCC-----CCEEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC
Confidence 99999998 7888888888999999763 4444444332 2567899998 6777766 454 8999995 45
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
+.+..+..+... ..+..+++ +++.++++..+++|++|++...
T Consensus 239 ~~~~~~~~~~~~----~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKH----AQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCC----SCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred CEEEEEcccCCC----CcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 556555433211 12446777 5676666668899999987553
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.09 E-value=9.6e-10 Score=123.92 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=124.9
Q ss_pred eEEEEecCCE-EEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC----CCEEEEeccCCceEEEe
Q 004914 57 ASCVAVAERM-IALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFTDEKMKFD 131 (724)
Q Consensus 57 i~~~s~~~~~-la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~~~~~~~~ 131 (724)
+.+|+|+|+. +++.+.++.+.+||+.+.....+..+.. .+++|+|||++|++++.+ +.|++||+.+++...+.
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 5689999863 3334444555599996555544444433 789999999999988877 78999999998888887
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCCC--eEEEEecccCCccceEeccCCCCeEEEE--------Ee--CCEEEEE-
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAG--HLYLNSKKWLGYRDQVLHSGEGPVHVVK--------WR--TSLIAWA- 197 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg--~v~l~~~~~~~~~~~~l~~~~~~V~~l~--------~~--~~~la~~- 197 (724)
.+. .+.+++|+|+ |+.+++++.+| .|.+|+.. .+... .+..+...+.++. |+ |.+++++
T Consensus 192 ~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~i~~~d~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 192 SGEGSFSSASISPG-----MKVTAGLETAREARLVTVDPR-DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp CSSCEEEEEEECTT-----SCEEEEEECSSCEEEEEECTT-TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCccccceECCC-----CCEEEEccCCCeeEEEEEcCC-CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence 777 8899999999 89999888888 77777764 23333 5666666666666 88 6677766
Q ss_pred cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCe-EEEEEE
Q 004914 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY-IKIASI 253 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~-i~vw~~ 253 (724)
.++.+++|++ ++.... +. ..+.+++|+++..++++ .+.. -.+|.+
T Consensus 265 ~~g~~~l~~~--g~~~~~---~~------~~v~~~~~sdg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 265 REGRSAVFID--GERVEA---PQ------GNHGRVVLWRGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp ETTEEEEEET--TEEECC---CS------SEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEEEE--CCeecc---CC------CceEEEEecCCEEEEEEcCCCCCCeEEEE
Confidence 6899999999 554431 11 12446677777777666 4443 344433
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.06 E-value=2.6e-08 Score=104.92 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=123.4
Q ss_pred EEEecCCE--EEEEe-------------CCCeEEEEecC--CCeeEEEc----CCccceeEEEEcCCCCEEEEEeC-CCC
Q 004914 59 CVAVAERM--IALGT-------------HAGTVHILDFL--GNQVKEFP----AHTAAVNDLSFDVDGEYVGSCSD-DGS 116 (724)
Q Consensus 59 ~~s~~~~~--la~g~-------------~dg~I~i~d~~--~~~~~~~~----~h~~~V~~l~~s~~g~~l~s~~~-Dg~ 116 (724)
+++|+|++ ++++. .+|.+.+|++. |.....+. .+...+.+++|+|+|++++++.. ++.
T Consensus 89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 57788884 44543 68999999984 54433332 24567899999999998887664 679
Q ss_pred EEEEecc-CCceE---EEe--CCC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEeccc-CCccc---eEec---cC-
Q 004914 117 VVINSLF-TDEKM---KFD--YHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKW-LGYRD---QVLH---SG- 180 (724)
Q Consensus 117 v~iwd~~-~~~~~---~~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~-~~~~~---~~l~---~~- 180 (724)
|++|++. +++.. .+. .+. .+.+++|+|+ ++.+++++ .++.+.+|+... .+... ..+. .+
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd-----g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT-----GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT-----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC-----CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 9999998 66643 233 224 7899999999 77777665 478899987542 22211 1121 11
Q ss_pred ---CC------CeEEEE-Ee--CCEEEEEc--CC-----cEEEEEcC-CCceEE---EecCCCCCCCCCCCCCceee-c-
Q 004914 181 ---EG------PVHVVK-WR--TSLIAWAN--DA-----GVKVYDAA-NDQRIT---FIERPRGSPRPELLLPHLVW-Q- 235 (724)
Q Consensus 181 ---~~------~V~~l~-~~--~~~la~~~--d~-----~i~i~d~~-~~~~~~---~i~~~~~~~~~~~~~~~l~~-~- 235 (724)
.+ .+.+++ |+ |+++++++ ++ .|.+|++. +++... .+..+.. .+..++| +
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~------~~~~~a~sp~ 317 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS------GGHSNAVSPC 317 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC------CTTCCCEEEC
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC------CcccceecCC
Confidence 21 478899 98 67776552 33 79999996 565443 2222211 1334556 4
Q ss_pred --CCCeEEEE-e-CCeEEEEEEeeC
Q 004914 236 --DDTLLVIG-W-GTYIKIASIKTN 256 (724)
Q Consensus 236 --~~~~l~~g-~-d~~i~vw~~~~~ 256 (724)
+++.|+++ . ++.|++|++...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 68888888 3 589999999753
No 167
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.06 E-value=3.8e-08 Score=103.34 Aligned_cols=290 Identities=11% Similarity=0.052 Sum_probs=224.0
Q ss_pred CCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCC
Q 004914 394 RDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQ 473 (724)
Q Consensus 394 ~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~ 473 (724)
..+.....-|+..|+|++|++.+++... ..+.++.+..++..|+|+.|...... +...++.-++.+.-+.+.++
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKANS-----TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcCC-----chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCC
Confidence 5777788899999999999999887742 24677888889999999999543333 33455555677888888899
Q ss_pred CCcccccCcCC--CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHH
Q 004914 474 LPVLVPYMPTE--NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAEL 551 (724)
Q Consensus 474 l~~L~~~l~~~--~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 551 (724)
...++.++... ..+..-.+++-+=..|.+- .++++++-++.. ...-+++.++.+|++.- +...+.+|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~-~~~ini~k~~~~~~~~~--------~w~e~~~l 291 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELF-WSRVNIPKVLRAAEQAH--------LWAELVFL 291 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHH-STTSCHHHHHHHHHTTT--------CHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH-HHHhcCcHHHHHHHHHH--------HHHHHHHH
Confidence 88888888764 3355566666665555554 467777777754 24567889999998877 88899999
Q ss_pred HHhcCCHHHHHHHHHHcCC-----chhhHHHHhcCChHHHHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhcccc
Q 004914 552 YVIDGHYEKAFSLYADLMK-----PYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARD 626 (724)
Q Consensus 552 y~~~~~~~~al~~~~~~~~-----~~~~~~i~~~~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~ 626 (724)
|...++|+.|+..+++... ....+.|.+-.-.+.+++-+.-.++..|....+||.--...++++++|..+.+.
T Consensus 292 y~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~-- 369 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV-- 369 (449)
T ss_dssp HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT--
T ss_pred HHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHc--
Confidence 9999999999999999753 236678888888899999999999999999888888766789999999999875
Q ss_pred cCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhcCC---CchhHHHHHhc
Q 004914 627 KCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVKRD---LLREQVFILGR 702 (724)
Q Consensus 627 ~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~~~---~~~e~v~Ll~k 702 (724)
++-.+...||+.+-.. ..+.+-+.+-+||. +.+-+.|..=+....+||--..-..+++|. |.+=.+|||.|
T Consensus 370 --~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~~~nfd~~~l~~~le~h~l~~~r~iaa~~~~~ 444 (449)
T 1b89_A 370 --KQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKG 444 (449)
T ss_dssp --TCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHHHHHHHHHHC-
T ss_pred --CCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcCHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 4456667999887654 34678888888887 567888999999999999888888889997 45677999999
Q ss_pred cCChH
Q 004914 703 MGNTK 707 (724)
Q Consensus 703 ~g~~~ 707 (724)
.++|+
T Consensus 445 ~~~~~ 449 (449)
T 1b89_A 445 NNRWK 449 (449)
T ss_dssp -----
T ss_pred ccCCC
Confidence 88774
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.03 E-value=8e-08 Score=99.60 Aligned_cols=191 Identities=12% Similarity=0.048 Sum_probs=135.4
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCC--eeEEE---------cCCccceeEEEEcC-CCCEEEEEe-CCCCEEEEeccC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGN--QVKEF---------PAHTAAVNDLSFDV-DGEYVGSCS-DDGSVVINSLFT 124 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~--~~~~~---------~~h~~~V~~l~~s~-~g~~l~s~~-~Dg~v~iwd~~~ 124 (724)
.+++++|+++++.+.++.|++|+.++. .+..+ ..+.....+++++| +|..+++.+ .++.|++|+...
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG 175 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC
Confidence 356778898888888999999999876 45555 24445788999999 888888886 699999999554
Q ss_pred CceEEEeCC---------C--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec--cCCCCeEEEEEeC
Q 004914 125 DEKMKFDYH---------R--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWRT 191 (724)
Q Consensus 125 ~~~~~~~~~---------~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~--~~~~~V~~l~~~~ 191 (724)
.....+... . .+.+++++|+ ++..+++...++.|.+|+.. .+.....+. .+...+.+++|++
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~----~g~l~v~d~~~~~I~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPH----LDQLCVADRENGRIQCFKTD-TKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETT----TTEEEEEETTTTEEEEEETT-TCCEEEEECCTTTTTCEEEEEEET
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECC----CCEEEEEECCCCEEEEEECC-CCcEEEEEeccccCCCcceeeecC
Confidence 444444211 1 4899999997 36777888888999999875 455555553 3455678888885
Q ss_pred CEEEEE---------cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeC
Q 004914 192 SLIAWA---------NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 192 ~~la~~---------~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.++... .+..|++|+..+++.+..+.... .+...+..+++ +++.++++. .++.|++|++...
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 433332 13379999999999888764221 12223556777 566566666 7889999999764
No 169
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.02 E-value=7.7e-08 Score=100.97 Aligned_cols=187 Identities=9% Similarity=0.109 Sum_probs=121.0
Q ss_pred ceEEEEecCCEEEEEe-CCCeEEEEecC-CCeeE----EE--cC--------CccceeEEEEcCCCCEEEEEe-CCCCEE
Q 004914 56 AASCVAVAERMIALGT-HAGTVHILDFL-GNQVK----EF--PA--------HTAAVNDLSFDVDGEYVGSCS-DDGSVV 118 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~-~dg~I~i~d~~-~~~~~----~~--~~--------h~~~V~~l~~s~~g~~l~s~~-~Dg~v~ 118 (724)
....++++++++++++ .+|.|.+|++. ...+. .+ .+ +...+.+++|+|+|+++++++ .++.|.
T Consensus 101 ~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 101 DPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 3445666888777666 57899999984 22211 11 11 123457899999999765554 588999
Q ss_pred EEeccCCc-------e------EEE--eCCCCeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCcc--ceEec--
Q 004914 119 INSLFTDE-------K------MKF--DYHRPMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYR--DQVLH-- 178 (724)
Q Consensus 119 iwd~~~~~-------~------~~~--~~~~~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~--~~~l~-- 178 (724)
+|++.... + ... .....+.+++|+|+ ++.+++++ .++.|.+|+.. .+.. ...+.
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-----g~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~ 254 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-----GKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAAD 254 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-----SSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-----CCEEEEEcCCCCeEEEEEec-CCceEEeEEEecC
Confidence 99887532 2 122 22237889999999 77666655 68999999875 3321 11122
Q ss_pred -cCCCCeEEEEEe--CCEEEEE-c--CCcEEEEEcC--CCc--eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eC
Q 004914 179 -SGEGPVHVVKWR--TSLIAWA-N--DAGVKVYDAA--NDQ--RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WG 245 (724)
Q Consensus 179 -~~~~~V~~l~~~--~~~la~~-~--d~~i~i~d~~--~~~--~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d 245 (724)
.+.....+++|+ |++++++ . ++.|.+|++. +++ .+..+.. . ..+..++| ++++.|+++ .+
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g------~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G------IHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S------SCCCEEEECTTSCEEEEEETTT
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C------CCCceEEECCCCCEEEEEECCC
Confidence 223446789998 6777655 3 4789999996 444 3333332 1 23557888 677777777 57
Q ss_pred CeEEEEEEee
Q 004914 246 TYIKIASIKT 255 (724)
Q Consensus 246 ~~i~vw~~~~ 255 (724)
+.|.+|++..
T Consensus 328 ~~v~v~~~d~ 337 (361)
T 3scy_A 328 NVIQIFERDQ 337 (361)
T ss_dssp TEEEEEEECT
T ss_pred CCEEEEEEEC
Confidence 8899988864
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.99 E-value=8.2e-08 Score=100.02 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=113.7
Q ss_pred eEEEEecCCEEEEEeCC---C--eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC-----------------
Q 004914 57 ASCVAVAERMIALGTHA---G--TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD----------------- 114 (724)
Q Consensus 57 i~~~s~~~~~la~g~~d---g--~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----------------- 114 (724)
..+|+|+|+.|++++.+ + .|.+|+..+.....+..+.. +.+++|+|+|+.|+.++.+
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 34799999999887754 3 47788886655544444444 9999999999998887642
Q ss_pred ----------CCEEEEeccCCce-EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCC-------eEEEEecccCCccceE
Q 004914 115 ----------GSVVINSLFTDEK-MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAG-------HLYLNSKKWLGYRDQV 176 (724)
Q Consensus 115 ----------g~v~iwd~~~~~~-~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg-------~v~l~~~~~~~~~~~~ 176 (724)
..|.+||+.+++. ..+... .+.+++|+|+ + .++++..++ ...+|... .+. ...
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spd-----g-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~ 212 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRD-----K-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEK 212 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETT-----E-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCC-----e-EEEEEecccccccccccccEEEeC-CCc-eEE
Confidence 5688999988776 544433 7889999999 6 666665442 44555544 333 333
Q ss_pred eccCCCCeEEEEEeCCEEEEE-cC--------CcEEEEEcCCCceEEEecCCCCCCCCCCCCCc-eeecCCCeEEEE-eC
Q 004914 177 LHSGEGPVHVVKWRTSLIAWA-ND--------AGVKVYDAANDQRITFIERPRGSPRPELLLPH-LVWQDDTLLVIG-WG 245 (724)
Q Consensus 177 l~~~~~~V~~l~~~~~~la~~-~d--------~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~-l~~~~~~~l~~g-~d 245 (724)
+..+ +.+..+.-+|+.++.+ .+ ..|.+|| +++....... +...+.. +.|+++ +++++ .+
T Consensus 213 l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~~~~~~~~sdg-~~~~~~~~ 282 (347)
T 2gop_A 213 MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE------VDRGVGQAKIKDGK-VYFTLFEE 282 (347)
T ss_dssp EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT------CCSEEEEEEEETTE-EEEEEEET
T ss_pred eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc------CCcccCCccEEcCc-EEEEEecC
Confidence 3333 5565553337666554 33 2477777 5544332221 1122333 678755 66666 88
Q ss_pred CeEEEEEEe
Q 004914 246 TYIKIASIK 254 (724)
Q Consensus 246 ~~i~vw~~~ 254 (724)
+.+++| +.
T Consensus 283 ~~~~l~-~~ 290 (347)
T 2gop_A 283 GSVNLY-IW 290 (347)
T ss_dssp TEEEEE-EE
T ss_pred CcEEEE-Ec
Confidence 899999 87
No 171
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.98 E-value=2.5e-09 Score=123.79 Aligned_cols=188 Identities=10% Similarity=0.117 Sum_probs=121.1
Q ss_pred eEEEEecCCEEEEEeC---------CCeEEEEecCCCee---EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC
Q 004914 57 ASCVAVAERMIALGTH---------AGTVHILDFLGNQV---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 57 i~~~s~~~~~la~g~~---------dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~ 124 (724)
..+|||+|++|++++. ++.|++||+.+... ..+ ...+.+++|||||+.|++++ ++.|++|++.+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~ 139 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG 139 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence 3469999999999876 78999999966544 333 25688999999999999986 78999999988
Q ss_pred CceEEEeCCC---Ce-----------------eEEEeCCCCCCCCCCEEEEecCCC------------------------
Q 004914 125 DEKMKFDYHR---PM-----------------KAISLDPDYTRKMSRRFVAGGLAG------------------------ 160 (724)
Q Consensus 125 ~~~~~~~~~~---~v-----------------~~v~~~p~~~~~~~~~l~~g~~dg------------------------ 160 (724)
+....+.... .| .+++|+|+ |+.|++++.|.
T Consensus 140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-----G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-----GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-----SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-----CCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 7765543211 22 48999999 89999887542
Q ss_pred ----------eEEEEecccCCccc--------eEeccCCCCeEEEEEe--CCEEEEEc-CC----cEEEEE----cCCCc
Q 004914 161 ----------HLYLNSKKWLGYRD--------QVLHSGEGPVHVVKWR--TSLIAWAN-DA----GVKVYD----AANDQ 211 (724)
Q Consensus 161 ----------~v~l~~~~~~~~~~--------~~l~~~~~~V~~l~~~--~~~la~~~-d~----~i~i~d----~~~~~ 211 (724)
.+.+|+.. .+... ..+..+.+.+.+++|+ +++++++. .+ .|.+|| ..+++
T Consensus 215 p~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 56676653 22211 1123467789999999 56666542 22 388899 77766
Q ss_pred eEEEe----cCCCCCCCCCCCCCceee-cCCCeEEE--E-eCCe--EEEEEEee
Q 004914 212 RITFI----ERPRGSPRPELLLPHLVW-QDDTLLVI--G-WGTY--IKIASIKT 255 (724)
Q Consensus 212 ~~~~i----~~~~~~~~~~~~~~~l~~-~~~~~l~~--g-~d~~--i~vw~~~~ 255 (724)
....+ ..+...... .....+.| ++++.++. + .++. |++|++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp CCGGGEEEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred eEEEEecccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 54433 122111000 00115678 67775543 3 4554 55555443
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.97 E-value=3.6e-08 Score=103.91 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=122.5
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec--CCCeeEEEcC-CccceeEEEEcCCCCE--EEEEe-------------CCCCEEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF--LGNQVKEFPA-HTAAVNDLSFDVDGEY--VGSCS-------------DDGSVVI 119 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~--~~~~~~~~~~-h~~~V~~l~~s~~g~~--l~s~~-------------~Dg~v~i 119 (724)
.+++|+|+++++++.+ .|.+|++ +|........ ..+.+.+++|+|+|++ +++++ .+|.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4688999999888887 9999998 3543322221 1133567899999994 45553 6899999
Q ss_pred EeccC-CceE-EEe----CCC-CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccc--eEec--cCCCCeEEE
Q 004914 120 NSLFT-DEKM-KFD----YHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRD--QVLH--SGEGPVHVV 187 (724)
Q Consensus 120 wd~~~-~~~~-~~~----~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~--~~l~--~~~~~V~~l 187 (724)
|++.. +.+. .+. .+. .+.+++|+|+ ++.+++++ .++.|.+|+..-.+... ..+. .+...+..+
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd-----G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-----ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTT-----SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred EccCCCCcCcceEeeEEeCCCCcceEEEECCC-----CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 99974 5543 222 133 8999999999 77777654 46789999874223221 2222 224568899
Q ss_pred EEe--CCEEEEE--cCCcEEEEEcC--CCceE---EEecC-CCCCCCCCC------CCCcee-e-cCCCeEEEE--eCC-
Q 004914 188 KWR--TSLIAWA--NDAGVKVYDAA--NDQRI---TFIER-PRGSPRPEL------LLPHLV-W-QDDTLLVIG--WGT- 246 (724)
Q Consensus 188 ~~~--~~~la~~--~d~~i~i~d~~--~~~~~---~~i~~-~~~~~~~~~------~~~~l~-~-~~~~~l~~g--~d~- 246 (724)
+|+ |++++++ .++.|.+|++. +++.. ..+.. +.....+.. .+..++ | ++++.|+++ .++
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~ 278 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF 278 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence 999 6777665 36789999875 45542 12221 111111111 355678 8 678777766 334
Q ss_pred ----eEEEEEEe
Q 004914 247 ----YIKIASIK 254 (724)
Q Consensus 247 ----~i~vw~~~ 254 (724)
.|.+|++.
T Consensus 279 ~~~~~i~v~~~~ 290 (365)
T 1jof_A 279 ELQGYIAGFKLR 290 (365)
T ss_dssp TSCCEEEEEEEC
T ss_pred CCCCeEEEEEEC
Confidence 89999996
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.96 E-value=1.5e-07 Score=95.07 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=128.0
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEc------CCccceeEEEE-cCCCCEEEEEeC-CCCEEEEeccCCceEEE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFP------AHTAAVNDLSF-DVDGEYVGSCSD-DGSVVINSLFTDEKMKF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~------~h~~~V~~l~~-s~~g~~l~s~~~-Dg~v~iwd~~~~~~~~~ 130 (724)
+++++++++++.+.++.|.+||.++..+..+. +|...+.++++ .++|+.+++... ++.|.+||........+
T Consensus 36 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~ 115 (286)
T 1q7f_A 36 AVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF 115 (286)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe
Confidence 46677888888888999999999887766663 24457889999 577777777644 88999999544444445
Q ss_pred eCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec--cCCCCeEEEEEe--CCEEEEE-cCCcEE
Q 004914 131 DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (724)
Q Consensus 131 ~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~--~~~~~V~~l~~~--~~~la~~-~d~~i~ 203 (724)
.... .+.+++++|+ ++.+++...++.|.+|+.. +.....+. .+...+.+++++ |.++++. .++.|+
T Consensus 116 ~~~~~~~~~~i~~~~~-----g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 116 GATILQHPRGVTVDNK-----GRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 188 (286)
T ss_dssp CTTTCSCEEEEEECTT-----SCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred cCccCCCceEEEEeCC-----CCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence 3332 7899999998 7888888888899998753 44444443 233567899998 5666665 588999
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCC-eEEEEEE
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGT-YIKIASI 253 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~-~i~vw~~ 253 (724)
+|+.. ++.+..+..... ...+..+++ +++.++++. .++ .|++|+.
T Consensus 189 ~~~~~-g~~~~~~~~~g~----~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 189 VFNYE-GQYLRQIGGEGI----TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEETT-CCEEEEESCTTT----SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEcCC-CCEEEEEccCCc----cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 99974 455555543211 123456777 567777776 454 8999973
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.95 E-value=1.8e-07 Score=94.15 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=126.9
Q ss_pred cCCEEEEEeCCCeEEEEec-CCCeeEEEcCCc-cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC-C-CeeE
Q 004914 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH-R-PMKA 138 (724)
Q Consensus 63 ~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~-~-~v~~ 138 (724)
.++.|++++.++.|.+||. +|+.+..+..+. ..++++.++|+|+.++ +.++.|..||.....+..+..+ . .+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 3678999999999999999 888888887766 4789999999999888 3477899999943445566654 3 7889
Q ss_pred EEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEecc------CCCCeEEEEEe--CCEEEEE-cCCcEEEEEcC
Q 004914 139 ISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHS------GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l~~------~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~ 208 (724)
+.+.|+ ++.+++.+. ++.+..++. .++....+.. +..+...+.+. |+++++. .++.|..||..
T Consensus 82 ~~~~~d-----G~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 82 ARILPD-----GNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEECTT-----SCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cEECCC-----CCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 999999 888888776 666766554 4544333321 11123334444 7888877 68899999988
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
|+.+..+..+.. +..... .++..++++ .+++|..+|..+++
T Consensus 155 -G~~~w~~~~~~~-------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 155 -GQLLNSVKLSGT-------PFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -SCEEEEEECSSC-------CCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred -CCEEEEEECCCC-------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 888887766421 222333 577777777 55678888766544
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.94 E-value=1.6e-07 Score=95.47 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=127.1
Q ss_pred EEEEecCC-EEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--C-
Q 004914 58 SCVAVAER-MIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--H- 133 (724)
Q Consensus 58 ~~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~- 133 (724)
.+|+++++ ++++++.++.|..|+..+. ...+..+...+.+++++++|+++++...++.|.+||..++....+.. .
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence 46889998 7888999999999999776 77777788889999999999988888778899999998877654321 1
Q ss_pred ---CCeeEEEeCCCCCCCCCCEEEE----ec-------------CCCeEEEEecccCCccceEeccCCCCeEEEEEe--C
Q 004914 134 ---RPMKAISLDPDYTRKMSRRFVA----GG-------------LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T 191 (724)
Q Consensus 134 ---~~v~~v~~~p~~~~~~~~~l~~----g~-------------~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~ 191 (724)
..+..++++|+ |+.+++ |+ ..+.|..++.. .....+..+.....+++|+ |
T Consensus 112 ~~~~~~~~i~~d~~-----G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 112 KKLNSPNDVCLAPD-----GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EECCCCCCEEECTT-----SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEEEECCCSSEEEEEECTTS
T ss_pred CCCCCCCCEEECCC-----CCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEEeecCCCCCccEEECCCC
Confidence 15678999999 788877 33 12345544432 2333444555667899998 6
Q ss_pred CEEEEE-cCCcEEEEEcC-CCce---EEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEE
Q 004914 192 SLIAWA-NDAGVKVYDAA-NDQR---ITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASI 253 (724)
Q Consensus 192 ~~la~~-~d~~i~i~d~~-~~~~---~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~ 253 (724)
+++++. .++.|.+|++. ++.. ...+ .. ....+..+++ +++.+++++ ++.|.+|+.
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-----~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~ 244 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHF-TV-----EPGKTDGLRVDAGGLIWASA-GDGVHVLTP 244 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC-----SSSCCCSEEEBTTSCEEEEE-TTEEEEECT
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC-----CCCCCCeEEECCCCCEEEEc-CCeEEEECC
Confidence 777444 46789999987 4544 2233 11 1123456777 566655555 888999975
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.94 E-value=3.4e-08 Score=102.45 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=127.6
Q ss_pred EEEecCCEEEEEeCC------------------------CeEEEEec-CCCeeEEEc-CCccceeEEEEcCCCCEEEEEe
Q 004914 59 CVAVAERMIALGTHA------------------------GTVHILDF-LGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCS 112 (724)
Q Consensus 59 ~~s~~~~~la~g~~d------------------------g~I~i~d~-~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~ 112 (724)
+++++|+++++++.+ |.|.+||. ++..+..+. ++-....+++++|+|+.+++.+
T Consensus 30 a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~ 109 (329)
T 3fvz_A 30 ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDV 109 (329)
T ss_dssp EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEET
T ss_pred EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEEC
Confidence 577788988888777 57999999 476665553 3445789999999999999988
Q ss_pred CCCCEEEEeccCC--ceEEEe---------CCC-CeeEEEeCC-CCCCCCCCEEEEec-CCCeEEEEecccCCccceEec
Q 004914 113 DDGSVVINSLFTD--EKMKFD---------YHR-PMKAISLDP-DYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLH 178 (724)
Q Consensus 113 ~Dg~v~iwd~~~~--~~~~~~---------~~~-~v~~v~~~p-~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~ 178 (724)
.++.|++||..+. .+..+. .+- .+.+++++| + +..+++.+ .++.|.+|+. .+.....+.
T Consensus 110 ~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~-----g~lyv~d~~~~~~I~~~~~--~g~~~~~~~ 182 (329)
T 3fvz_A 110 ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST-----GAVFVSDGYCNSRIVQFSP--SGKFVTQWG 182 (329)
T ss_dssp TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT-----CCEEEEECSSCCEEEEECT--TSCEEEEEC
T ss_pred CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC-----CeEEEEeCCCCCeEEEEcC--CCCEEEEec
Confidence 8999999998765 344442 222 688999999 5 77888876 6889999874 354444443
Q ss_pred cC----------CCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecC-------C
Q 004914 179 SG----------EGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD-------D 237 (724)
Q Consensus 179 ~~----------~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-------~ 237 (724)
.. -....+++++ +.++++. .++.|++|+..+++.+..+..+... ..+..+++.. +
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG----RNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT----TCEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC----CCcceeeecCCEEEEeCC
Confidence 21 1237889997 3444444 5788999999988888877544211 1233444533 2
Q ss_pred CeEEEE-eCCeEEEEEEeeCC
Q 004914 238 TLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 238 ~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..+++. .++.|++|+..++.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCC
T ss_pred CEEeccCCCcEEEEEEcCCCe
Confidence 222222 33478888875543
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.94 E-value=4.9e-08 Score=113.24 Aligned_cols=147 Identities=8% Similarity=0.086 Sum_probs=105.9
Q ss_pred EEEEecCCEEEEEeCC---------CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 58 SCVAVAERMIALGTHA---------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d---------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
..|||||+.|++++.+ |.+.+||+.+.....+..|.+.+...+|||||+.||.++ |+.|++|++.++...
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 4789999999999876 667799997776667777888999999999999999885 689999999887766
Q ss_pred EEeCCC---Ce-----------------eEEEeCCCCCCCCCCEEEEecCCC----------------------------
Q 004914 129 KFDYHR---PM-----------------KAISLDPDYTRKMSRRFVAGGLAG---------------------------- 160 (724)
Q Consensus 129 ~~~~~~---~v-----------------~~v~~~p~~~~~~~~~l~~g~~dg---------------------------- 160 (724)
.+.... .+ .+++|+|+ |+.|+.++.|.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-----g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-----GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-----SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCC-----CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 543322 22 34899999 88888875322
Q ss_pred --------eEEEEecccC---Cc--cceEec------cCCCCeEEEEEe--CCEEEEE-c----CCcEEEEEcCCCc
Q 004914 161 --------HLYLNSKKWL---GY--RDQVLH------SGEGPVHVVKWR--TSLIAWA-N----DAGVKVYDAANDQ 211 (724)
Q Consensus 161 --------~v~l~~~~~~---~~--~~~~l~------~~~~~V~~l~~~--~~~la~~-~----d~~i~i~d~~~~~ 211 (724)
.+.+|+.. . +. ....+. ++...+..++|+ |++++.. + +..|.+||+.+++
T Consensus 221 ~G~~~~~~~l~v~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTD-SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp TTSCCCEEEEEEEETT-SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CcCcCCeeEEEEEECC-CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 24455543 2 21 222232 256678899999 6655544 2 2259999999887
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.89 E-value=6.5e-08 Score=102.49 Aligned_cols=191 Identities=8% Similarity=0.002 Sum_probs=120.9
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC-CCeeEEEcCCccceeEEE--EcCCCCEEEEEe----------------------
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLS--FDVDGEYVGSCS---------------------- 112 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~--~s~~g~~l~s~~---------------------- 112 (724)
.+|+|+|+.|++++.++.|++||+. +........+...+.... ++|+|+.++...
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 3799999999999999999999995 444444555555554444 489999887532
Q ss_pred CCCCEEEEeccCCceEEEeCCC-CeeEEEeCC-CCCCCCCCEEEEecCCC------eEEEEecccCCccceEeccCC--C
Q 004914 113 DDGSVVINSLFTDEKMKFDYHR-PMKAISLDP-DYTRKMSRRFVAGGLAG------HLYLNSKKWLGYRDQVLHSGE--G 182 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p-~~~~~~~~~l~~g~~dg------~v~l~~~~~~~~~~~~l~~~~--~ 182 (724)
.++.|.+||+.+++...+..+. .+..++|+| + ++.++.+..++ .+.+++. .+.....+..+. .
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d-----g~~l~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD-----DSTVAFCHEGPHDLVDARMWLINE--DGTNMRKVKTHAEGE 238 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE-----EEEEEEEECSCTTTSSCSEEEEET--TSCCCEESCCCCTTE
T ss_pred CcceEEEEECCCCceEEeecCCccccccEECCCC-----CCEEEEEEecCCCCCcceEEEEeC--CCCceEEeeeCCCCc
Confidence 3467999999998877765555 889999999 8 77777766532 4555544 344445554444 3
Q ss_pred CeEEEEEe--CCEEE-EEc-CC----cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE----------
Q 004914 183 PVHVVKWR--TSLIA-WAN-DA----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG---------- 243 (724)
Q Consensus 183 ~V~~l~~~--~~~la-~~~-d~----~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g---------- 243 (724)
.+....|+ |+.|+ .+. ++ .|.+||+.+++.......+. ............| ++++.|++.
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 57788998 56554 342 22 29999999887543222111 0000000122356 566666643
Q ss_pred eCCeEEEEEEeeC
Q 004914 244 WGTYIKIASIKTN 256 (724)
Q Consensus 244 ~d~~i~vw~~~~~ 256 (724)
.+..|++||+.++
T Consensus 318 ~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 318 NDPFLYVFNMKNG 330 (388)
T ss_dssp CCCEEEEEETTTT
T ss_pred CCCEEEEEeccCC
Confidence 3447899987653
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.89 E-value=1.3e-06 Score=100.82 Aligned_cols=187 Identities=11% Similarity=0.043 Sum_probs=118.5
Q ss_pred EEEEecCCEEEEEeCCC-----eEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCC----------------
Q 004914 58 SCVAVAERMIALGTHAG-----TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS---------------- 116 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg-----~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~---------------- 116 (724)
.+|||+|++||.++.++ .|++||+.+............+.+++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 35899999999876644 899999965554332222233678999999999999988766
Q ss_pred EEEEeccCCc---eEEEeC--CC-CeeEEEeCCCCCCCCCCEEEEecC-----CCeEEEEecccC-----Cc-cceEecc
Q 004914 117 VVINSLFTDE---KMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGL-----AGHLYLNSKKWL-----GY-RDQVLHS 179 (724)
Q Consensus 117 v~iwd~~~~~---~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~-----dg~v~l~~~~~~-----~~-~~~~l~~ 179 (724)
|++|++.++. ...+.. +. .+.+++|+|+ +++++.++. +..+.+|+..-. +. ....+..
T Consensus 210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-----g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-----GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-----SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred EEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-----CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 9999998865 233333 23 5789999999 788877654 457888876420 22 3455555
Q ss_pred CCCCeEEEEEe--CCEEEE-EcCC----cEEEEEcCCCce--EEEecCCCCCCCCCCCCCceeec-CCCeEEEE-eCCeE
Q 004914 180 GEGPVHVVKWR--TSLIAW-ANDA----GVKVYDAANDQR--ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYI 248 (724)
Q Consensus 180 ~~~~V~~l~~~--~~~la~-~~d~----~i~i~d~~~~~~--~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i 248 (724)
+...+... |+ |..++. ++.+ .|.+||+.++.. ...+..+.. ...+..+.|. ++.+++++ .++..
T Consensus 285 ~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 285 NFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE----KDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS----SCEEEEEEEETTTEEEEEEEETTEE
T ss_pred CCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC----CCeEEEEEEEcCCEEEEEEEECCEE
Confidence 55555543 44 665544 4322 489999887641 122222211 0134457776 55666666 67765
Q ss_pred EEEEEe
Q 004914 249 KIASIK 254 (724)
Q Consensus 249 ~vw~~~ 254 (724)
++|.+.
T Consensus 360 ~l~~~~ 365 (710)
T 2xdw_A 360 TLQLHD 365 (710)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555444
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.86 E-value=4.7e-08 Score=111.86 Aligned_cols=185 Identities=10% Similarity=0.001 Sum_probs=120.3
Q ss_pred EEEEecCCEEEEEeCC----------CeEEEEecCC------CeeEEEc-CCccceeEEEEcCCCCEEEEEeCCC-----
Q 004914 58 SCVAVAERMIALGTHA----------GTVHILDFLG------NQVKEFP-AHTAAVNDLSFDVDGEYVGSCSDDG----- 115 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d----------g~I~i~d~~~------~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~~Dg----- 115 (724)
.+|+|+|+.|++++.+ ..|++||..+ .....+. .+...+.+++|+|||++|+.++.++
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 4599999999988876 5899999976 5566666 6667888999999999999887553
Q ss_pred ---CEEEEecc-CC---ceEEEe-CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC-CC--
Q 004914 116 ---SVVINSLF-TD---EKMKFD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE-GP-- 183 (724)
Q Consensus 116 ---~v~iwd~~-~~---~~~~~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~-~~-- 183 (724)
.|.+||+. ++ ....+. .+. .+.+++|+|+ |+.+++++.+|...+|.....+.....+..+. ..
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd-----g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD-----GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT-----SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC-----CeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 79999998 46 444443 334 8999999999 77888888888555554332232222232222 11
Q ss_pred ------eEEEEEe--CCEEEEEcCCcEEEE--EcCCCceEEEecCCCCCCCCCCCCCce-eecCCCeEEEE--eCCeEEE
Q 004914 184 ------VHVVKWR--TSLIAWANDAGVKVY--DAANDQRITFIERPRGSPRPELLLPHL-VWQDDTLLVIG--WGTYIKI 250 (724)
Q Consensus 184 ------V~~l~~~--~~~la~~~d~~i~i~--d~~~~~~~~~i~~~~~~~~~~~~~~~l-~~~~~~~l~~g--~d~~i~v 250 (724)
+.+++|+ +.++++++.+.+++| |..+++ +..+..+.. .+..+ ++..+..++++ .+....+
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~------~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWT------EWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCC------EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCC------eEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 4567786 577777744888888 555554 444433321 22334 44444444444 3334555
Q ss_pred EEEe
Q 004914 251 ASIK 254 (724)
Q Consensus 251 w~~~ 254 (724)
|.+.
T Consensus 363 ~~~d 366 (662)
T 3azo_A 363 VELD 366 (662)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.84 E-value=2.8e-08 Score=104.08 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=118.8
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-C-----------CeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-G-----------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~-----------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~ 124 (724)
..++++..+++++|+.+| +.+|+.. . ..... ..+.+ |+.++| +++.|+++ .+|.|++||+.+
T Consensus 42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 456888889999999986 4459862 1 11122 23556 999999 89999988 889999999987
Q ss_pred C-ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCC-EEEEEcCCc
Q 004914 125 D-EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTS-LIAWANDAG 201 (724)
Q Consensus 125 ~-~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~-~la~~~d~~ 201 (724)
. .......++ ++.++.+.+. + +++++.||.+.+|+.. .+.... ....|++++|+++ +++++.||.
T Consensus 116 l~~~~~~~~~~~~v~~i~~~~p------~-~av~~~dG~L~v~dl~-~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~ 183 (388)
T 1xip_A 116 LSEFRTVTSFEKPVFQLKNVNN------T-LVILNSVNDLSALDLR-TKSTKQ----LAQNVTSFDVTNSQLAVLLKDRS 183 (388)
T ss_dssp TTCEEEEEECSSCEEEEEECSS------E-EEEEETTSEEEEEETT-TCCEEE----EEESEEEEEECSSEEEEEETTSC
T ss_pred hhccCccceeecceeeEEecCC------C-EEEEECCCCEEEEEcc-CCcccc----ccCCceEEEEcCCceEEEEcCCc
Confidence 3 333444555 8888887765 2 8888999999999875 233222 3457999999943 444558999
Q ss_pred EEEEEcCCCce--EEEecCCCCC---CCCCCCCCceee-cCCCeEEE
Q 004914 202 VKVYDAANDQR--ITFIERPRGS---PRPELLLPHLVW-QDDTLLVI 242 (724)
Q Consensus 202 i~i~d~~~~~~--~~~i~~~~~~---~~~~~~~~~l~~-~~~~~l~~ 242 (724)
+++|+..+++. ...++.|... ..+...+.+++| .++.++++
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999988775 6677665422 124567888999 55555554
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.82 E-value=2.6e-07 Score=106.23 Aligned_cols=184 Identities=12% Similarity=0.051 Sum_probs=119.9
Q ss_pred EEEecCCEEEEE-----eCCCeEEEEecCCCeeEEEcCCccce--eEEEEcCCCCEEEEEeCCCC-------------EE
Q 004914 59 CVAVAERMIALG-----THAGTVHILDFLGNQVKEFPAHTAAV--NDLSFDVDGEYVGSCSDDGS-------------VV 118 (724)
Q Consensus 59 ~~s~~~~~la~g-----~~dg~I~i~d~~~~~~~~~~~h~~~V--~~l~~s~~g~~l~s~~~Dg~-------------v~ 118 (724)
+|||+|++||.+ +.+..|++||+.+..... ..+...+ .+++|+|||+.|+.++.|+. |+
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 589999999854 334689999995544320 1122222 67899999999999998876 99
Q ss_pred EEeccCCc---eEEEe--CCC-CeeEEEeCCCCCCCCCCEEEEecCCC----eEEEEecccCCccceEeccCCCCeEEEE
Q 004914 119 INSLFTDE---KMKFD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAG----HLYLNSKKWLGYRDQVLHSGEGPVHVVK 188 (724)
Q Consensus 119 iwd~~~~~---~~~~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg----~v~l~~~~~~~~~~~~l~~~~~~V~~l~ 188 (724)
+|++.++. ...+. .+. .+.+++|+|+ |+++++++.++ .+.+++. .+.....+..+...+....
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD-----GKYLFVYILRGWSENDVYWKRP--GEKDFRLLVKGVGAKYEVH 278 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTT-----SCCEEEEEEETTTEEEEEEECT--TCSSCEEEEECSSCCEEEE
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCC-----CCEEEEEEeCCCCceEEEEEcC--CCCceEEeecCCCceEEEE
Confidence 99998865 23332 333 7889999999 78887776555 4555432 2334455555555566666
Q ss_pred Ee-CCEEEEEc----CCcEEEEEcCCCce---EEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 189 WR-TSLIAWAN----DAGVKVYDAANDQR---ITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 189 ~~-~~~la~~~----d~~i~i~d~~~~~~---~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
|. |.+++.++ ++.|.+||+.++.. ...+.... ...+..++|.++.+++++ .++..++|.+..
T Consensus 279 ~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 279 AWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-----SASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp EETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-----SCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC-----CCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 66 56444443 36799999877642 22322211 122445677777777777 888889988763
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.80 E-value=3.2e-07 Score=96.33 Aligned_cols=187 Identities=17% Similarity=0.093 Sum_probs=118.3
Q ss_pred EEEEecCCEEEEEe----------CCCeEEEEec-CCCeeEEEcCC------ccceeEEEEcCCCCEEEEEeC--CCCEE
Q 004914 58 SCVAVAERMIALGT----------HAGTVHILDF-LGNQVKEFPAH------TAAVNDLSFDVDGEYVGSCSD--DGSVV 118 (724)
Q Consensus 58 ~~~s~~~~~la~g~----------~dg~I~i~d~-~~~~~~~~~~h------~~~V~~l~~s~~g~~l~s~~~--Dg~v~ 118 (724)
.+++|+|+++.+++ .++.|.+||. +++.+..+... ......++++|+|++++++.. ++.|.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~ 134 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG 134 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence 47899999988876 3678999999 45666665432 245678999999999988764 68999
Q ss_pred EEeccCCceEEE-eCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc------eEec-------------
Q 004914 119 INSLFTDEKMKF-DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD------QVLH------------- 178 (724)
Q Consensus 119 iwd~~~~~~~~~-~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~------~~l~------------- 178 (724)
+||+.+++.... -.......+.+.|+ +...+++.+.||.+.++.....+... ..+.
T Consensus 135 v~d~~~~~~~~~~i~~~~~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (361)
T 2oiz_A 135 IVDVAKGDYVEDVTAAAGCWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD 210 (361)
T ss_dssp EEETTTTEEEEEEGGGTTEEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC
T ss_pred EEECCCCcEEEEEecCCCcceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc
Confidence 999998765432 22222333455565 22455566666666555432111110 0000
Q ss_pred -------cCCCCe---------------------------------EEEEEe--CCEEEEE-c-----------CCcEEE
Q 004914 179 -------SGEGPV---------------------------------HVVKWR--TSLIAWA-N-----------DAGVKV 204 (724)
Q Consensus 179 -------~~~~~V---------------------------------~~l~~~--~~~la~~-~-----------d~~i~i 204 (724)
...+.| ..++++ +..+.++ . ++.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 000000 114555 3444433 2 236999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
||+.+++.+..++.+. +..+.| ++++.|+++.++.|.+||..++
T Consensus 291 iD~~t~~~v~~i~~~~--------p~~ia~spdg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD--------ALSMTIDQQRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEECTT--------CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred EECCCCcEEEEEecCC--------eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence 9999999998876543 456777 6888888885599999998876
No 184
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.80 E-value=1.3e-07 Score=100.21 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=120.5
Q ss_pred EEEecCCEEEEEeC-CC--eEEEEecCCCeeEE-EcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEE-EeCC
Q 004914 59 CVAVAERMIALGTH-AG--TVHILDFLGNQVKE-FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYH 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~-dg--~I~i~d~~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~ 133 (724)
+|+|+|+.|++++. +| .|.+||..+..... ..++...+.++.|+|+|+.|+.++.++.+++||+.+++... ...+
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence 68999999998887 67 48888986555444 44555555578899999999999999999999999977654 3333
Q ss_pred C-CeeEE--EeCCCCCCCCCCEEEEe----------------------cCCCeEEEEecccCCccceEeccCCCCeEEEE
Q 004914 134 R-PMKAI--SLDPDYTRKMSRRFVAG----------------------GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK 188 (724)
Q Consensus 134 ~-~v~~v--~~~p~~~~~~~~~l~~g----------------------~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~ 188 (724)
. .+... .++|+ +..++.. +.++.+.+|+.. ......+..+...+..+.
T Consensus 122 ~~~~~~~~~~~~~d-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~~~~~~~~~ 194 (388)
T 3pe7_A 122 AEWVGYGTWVANSD-----CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK--TGESTVILQENQWLGHPI 194 (388)
T ss_dssp TTEEEEEEEEECTT-----SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT--TCCEEEEEEESSCEEEEE
T ss_pred hhcccccceeECCC-----CCeeccccccCcccccccccchhhhhhccCCcceEEEEECC--CCceEEeecCCccccccE
Confidence 3 34333 34787 6776632 233567777664 334445555667788999
Q ss_pred EeC---CEEEEE-cC------CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCC----eEEEE
Q 004914 189 WRT---SLIAWA-ND------AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGT----YIKIA 251 (724)
Q Consensus 189 ~~~---~~la~~-~d------~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~----~i~vw 251 (724)
|++ +.|+.. .+ ..|.++|..++..... .... ....+....| ++++.|+.. .++ .|++|
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV-KTHA----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES-CCCC----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe-eeCC----CCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 985 556555 32 2677778766544332 1111 0012345678 677766543 222 38899
Q ss_pred EEeeCC
Q 004914 252 SIKTNQ 257 (724)
Q Consensus 252 ~~~~~~ 257 (724)
|+.++.
T Consensus 270 d~~~g~ 275 (388)
T 3pe7_A 270 DPETLE 275 (388)
T ss_dssp CTTTCC
T ss_pred ecCCCc
Confidence 886543
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.78 E-value=4.3e-07 Score=90.70 Aligned_cols=186 Identities=11% Similarity=0.001 Sum_probs=125.2
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe-CC-C
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD-YH-R 134 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~-~~-~ 134 (724)
.+++++|+++++.. ++.|.+||..+.....+.. ....+.+++++++|+.+++...++.|.+|+..+....... .. .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN 150 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCC
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCC
Confidence 35667778665555 8899999997766554432 3357899999999998888888899999986654433222 22 2
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~ 210 (724)
.+.+++++|+ ++.+++...++.|.+|+.. +...... ..+...+.+++++ |.+.++. .++.|.+|+..+.
T Consensus 151 ~p~~i~~~~~-----g~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 151 DPDGVAVDNS-----GNVYVTDTDNNRVVKLEAE--SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp SCCCEEECTT-----CCEEEEEGGGTEEEEECTT--TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred CceeEEEeCC-----CCEEEEECCCCEEEEEecC--CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 6789999998 7777777777889988764 2222221 2223567889998 5666665 4788999998765
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
..... ... ....+..+++ +++.++++. .++.|+++++...+
T Consensus 224 ~~~~~-~~~-----~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 224 TSTVL-PFT-----GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCEEC-CCC-----SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred cceee-ccC-----CCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 43321 111 1123556777 567766666 78899999876543
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.76 E-value=2.2e-07 Score=106.90 Aligned_cols=195 Identities=11% Similarity=-0.011 Sum_probs=119.8
Q ss_pred ccccCCCceEEEEecCCEEEEEeCCC-----eEEEEecCCCeeEEE-------cCCccceeEEEEcCCCCEEE-----EE
Q 004914 49 PSLLANDAASCVAVAERMIALGTHAG-----TVHILDFLGNQVKEF-------PAHTAAVNDLSFDVDGEYVG-----SC 111 (724)
Q Consensus 49 ~~~~~~~~i~~~s~~~~~la~g~~dg-----~I~i~d~~~~~~~~~-------~~h~~~V~~l~~s~~g~~l~-----s~ 111 (724)
......+.+++.+++|++++....++ .+.+.+..+.....+ .+|...+.+++|||||++|+ +|
T Consensus 64 ~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G 143 (695)
T 2bkl_A 64 KELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA 143 (695)
T ss_dssp HHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT
T ss_pred HHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC
Confidence 33444455667779999888776543 345555434333333 23556799999999999988 34
Q ss_pred eCCCCEEEEeccCCceE-EEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe-------------EEEEecccCCcc-ce
Q 004914 112 SDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-------------LYLNSKKWLGYR-DQ 175 (724)
Q Consensus 112 ~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-------------v~l~~~~~~~~~-~~ 175 (724)
+.+.+|++||+.+++.. .-.... ...+++|+|+ ++.|+.++.++. |++|+.. .+.. ..
T Consensus 144 ~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspD-----g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~ 217 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPD-----SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG-TEPSKDT 217 (695)
T ss_dssp CSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTT-----SSEEEEEECCCCTTSCGGGGGGGCEEEEEETT-SCGGGCE
T ss_pred CceEEEEEEECCCCCCcCCcccCcccccceEEecC-----CCEEEEEEecCCCCCccccCCCCCEEEEEECC-CCchhce
Confidence 44568999999998764 211111 2378999999 888998887665 8888775 2321 22
Q ss_pred Ee-cc--CCCCeEEEEEe--CCEEEEE-cCC----cEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEe-
Q 004914 176 VL-HS--GEGPVHVVKWR--TSLIAWA-NDA----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGW- 244 (724)
Q Consensus 176 ~l-~~--~~~~V~~l~~~--~~~la~~-~d~----~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~- 244 (724)
.+ .. +...+.++.|+ |++|+.+ .++ .|.+|+..+++......... ......|+++.+++.+.
T Consensus 218 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-------~~~~~~~~~g~l~~~s~~ 290 (695)
T 2bkl_A 218 VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-------AKYEVHAWKDRFYVLTDE 290 (695)
T ss_dssp EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-------CCEEEEEETTEEEEEECT
T ss_pred EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-------ceEEEEecCCcEEEEECC
Confidence 22 22 34578899999 6666554 444 56666665554433322221 12234456666434442
Q ss_pred ---CCeEEEEEEeeC
Q 004914 245 ---GTYIKIASIKTN 256 (724)
Q Consensus 245 ---d~~i~vw~~~~~ 256 (724)
++.|.+|++.++
T Consensus 291 ~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 291 GAPRQRVFEVDPAKP 305 (695)
T ss_dssp TCTTCEEEEEBTTBC
T ss_pred CCCCCEEEEEeCCCC
Confidence 367888887553
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.73 E-value=1.3e-06 Score=88.84 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=120.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEec-CCCeeEEEcC----CccceeEEEEcCCCCEEEEEeC-----------------CCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPA----HTAAVNDLSFDVDGEYVGSCSD-----------------DGS 116 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~----h~~~V~~l~~s~~g~~l~s~~~-----------------Dg~ 116 (724)
+++++|+++++...++.|.+||. ++........ ....+++++++|+|+++++.+. .+.
T Consensus 75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 45667888777767789999999 6654322221 1235678999999998887321 245
Q ss_pred EEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc---ceEeccCCCCeEEEEEe--
Q 004914 117 VVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR---DQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~---~~~l~~~~~~V~~l~~~-- 190 (724)
|..++.. +....+..+. .+.+++|+|+ ++.+++.+.++.|.+|+..-.+.. ...+..+.+.+.+++++
T Consensus 155 l~~~~~~-g~~~~~~~~~~~~~gi~~s~d-----g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 155 VFRLAPD-GTLSAPIRDRVKPNGLAFLPS-----GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG 228 (296)
T ss_dssp EEEECTT-SCEEEEECCCSSEEEEEECTT-----SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred EEEECCC-CCEEEeecCCCCCccEEECCC-----CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence 5555555 5555554444 7899999999 777788888889999886422322 22332344556788888
Q ss_pred CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEEeCCeEEEEEEee
Q 004914 191 TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 191 ~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~~~~ 255 (724)
|++.++. ++.|.+|+.. ++.+..+..+.. +.+++| +++..|.++..+.+.-++..+
T Consensus 229 G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-------~~~~~f~~~d~~~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 229 GLIWASA-GDGVHVLTPD-GDELGRVLTPQT-------TSNLCFGGPEGRTLYMTVSTEFWSIETNV 286 (296)
T ss_dssp SCEEEEE-TTEEEEECTT-SCEEEEEECSSC-------CCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred CCEEEEc-CCeEEEECCC-CCEEEEEECCCC-------ceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence 6766666 8899999986 667666655432 456677 366778888666544444433
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.73 E-value=7.9e-07 Score=91.95 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=120.2
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCCEEEEEeCC----CCEEEEeccCCceEEE-e-
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFTDEKMKF-D- 131 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~~~~~~~-~- 131 (724)
+|+++|+++++++.++.|.+||..+.....+ ..+...+.+++++++|++++++..+ +.|.+||..++....+ .
T Consensus 51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 5778888888888999999999965544443 3566789999999999988887776 6899999988766532 2
Q ss_pred -CCC-CeeEEEeCCCCCCCCCCEEEEecC------CCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cC
Q 004914 132 -YHR-PMKAISLDPDYTRKMSRRFVAGGL------AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--ND 199 (724)
Q Consensus 132 -~~~-~v~~v~~~p~~~~~~~~~l~~g~~------dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d 199 (724)
... .+.+++++|+ ++.+++... .+.+..++. .+.....+......+.+++|+ |+.+.++ .+
T Consensus 131 ~~~~~~~~~i~~d~~-----g~l~v~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSK-----GGFYFTDFRGYSTNPLGGVYYVSP--DFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp SSSCCCEEEEEECTT-----SCEEEEECCCBTTBCCEEEEEECT--TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred CccCCcccceEECCC-----CCEEEEeccccccCCCceEEEEeC--CCCEEEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 223 7899999999 777766553 234444433 233333333333457889998 5555444 46
Q ss_pred CcEEEEEcCC-CceEEEecCC--CCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 200 AGVKVYDAAN-DQRITFIERP--RGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 200 ~~i~i~d~~~-~~~~~~i~~~--~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
+.|.+|+..+ +..+..+... .....+ ..+..+++ .++.++++. .++.|.+|+.
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 8899999964 3322211000 000001 13445667 466665555 4678999975
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.73 E-value=4.3e-07 Score=95.00 Aligned_cols=174 Identities=10% Similarity=0.063 Sum_probs=123.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc------------eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeE
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------------KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHL 162 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------------~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v 162 (724)
+++.+++++.+..+++|+.+| +++|++.... ........ |+.++| + +..++++ .+|.|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d-----~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H-----GDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E-----TTEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C-----CCEEEEE-cCCcE
Confidence 689999999999999999985 5559865311 12334344 999999 6 6888888 88999
Q ss_pred EEEecccCCccceEeccCCCCeEEEEEe-CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEE
Q 004914 163 YLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLV 241 (724)
Q Consensus 163 ~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~ 241 (724)
.+|+..-. ........++.++.++.+. ++++++.+||.+.+||+.++...... ..+.+++|+... ++
T Consensus 109 ~v~dv~sl-~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 109 YSLDLEEL-SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp EEEESSST-TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE----------ESEEEEEECSSE-EE
T ss_pred EEEEchhh-hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccccc----------CCceEEEEcCCc-eE
Confidence 99987522 2344456667778888887 45555568999999999977765321 137789995444 45
Q ss_pred EE-eCCeEEEEEEeeCCCCCCCCccccCCCeEEEEEEEe------e----eceEEEeeeecCCceEEEEeecCCC
Q 004914 242 IG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASF------Q----TSYYISGIAPFGDCLVVLAYIPGEE 305 (724)
Q Consensus 242 ~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~i~gi~~~~~~l~~l~~~~~~~ 305 (724)
+| .||.+++|+....... ....+ . -++.+.+|.|..+...++.|.+.+.
T Consensus 177 vg~~dg~i~~~~~~~~~~~---------------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~ 236 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEME---------------KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVIS 236 (388)
T ss_dssp EEETTSCEEEEEEETTEEE---------------EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCC
T ss_pred EEEcCCcEEEEcCCCcccc---------------ccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCC
Confidence 55 9999999977653310 01111 1 2578999999997777788877553
No 190
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.68 E-value=1.4e-09 Score=112.00 Aligned_cols=291 Identities=11% Similarity=0.090 Sum_probs=216.2
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCccccc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPY 480 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~ 480 (724)
..|+.-|.|..|.+.|++.... .++++....++..+.|.-| +.|.--+--.+++-+++|..+.+.+.++.|+..
T Consensus 178 stLV~L~~yq~AVdaArKAns~-----ktWKeV~~ACvd~~EfrLA-qicGLniIvhadeL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 178 STLVHLGEYQAAVDGARKANST-----RTWKEVCFACVDGKEFRLA-QMCGLHIVVHADELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSSSCSGGGSSTTTTTTCCSS-----CSHHHHTHHHHHSCTTTTT-THHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCh-----hHHHHHHHHHhCchHHHHH-HHhcchhcccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3355556666666665544431 3556667778888887655 333332222245566777777777777777777
Q ss_pred CcCC--CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCH
Q 004914 481 MPTE--NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHY 558 (724)
Q Consensus 481 l~~~--~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 558 (724)
+..+ ..+..-.++|-+=..|.+- .++++++-++..- .--++..++.+|++.- +...+.+||.+..+|
T Consensus 252 lEaglglErAHmGmFTELaILYsKY--~PeKlmEHlklf~-sriNipKviracE~ah--------LW~ElvfLY~~ydE~ 320 (624)
T 3lvg_A 252 LEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFW-SRVNIPKVLRAAEQAH--------LWAELVFLYDKYEEY 320 (624)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHSS--CTTHHHHHHTTSS-SSSCCTTTHHHHTTTT--------CHHHHHHHHHHHTCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHhc--CHHHHHHHHHHHH-HhccHHHHHHHHHHHh--------hHHHHHHHHhcchhH
Confidence 7664 4556667777665566665 4578888888643 3557889999998877 999999999999999
Q ss_pred HHHHHHHHHcC-----CchhhHHHHhcCChHHHHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhcccccCCchhH
Q 004914 559 EKAFSLYADLM-----KPYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYF 633 (724)
Q Consensus 559 ~~al~~~~~~~-----~~~~~~~i~~~~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~ 633 (724)
+.|...++... +....+.|.+-.-.+.+++.+.=-++..|....+||.--..++++.+||..|.+. ++-.+
T Consensus 321 DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~----~~LpL 396 (624)
T 3lvg_A 321 DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV----KQLPL 396 (624)
T ss_dssp HHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTT----TCGGG
T ss_pred HHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhc----CCchh
Confidence 99999988752 3446677888888899999999999999999999988766789999999999965 44555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhcCC---CchhHHHHHhccCChHHH
Q 004914 634 LHLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVKRD---LLREQVFILGRMGNTKHA 709 (724)
Q Consensus 634 l~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~~~---~~~e~v~Ll~k~g~~~~A 709 (724)
...||+.+ .+...+.+-+.+-+||. +.+.+.|..=+...++||--..-+.+++|. |.+=.+|||.|.++|++|
T Consensus 397 IkpYL~~V---q~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 397 VKPYLRSV---QNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp GTGGGTSC---CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHH---HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHH
Confidence 55677654 44456778888888887 457778888888888999777778888887 567789999999999999
Q ss_pred HHHHHH
Q 004914 710 LAVIIN 715 (724)
Q Consensus 710 l~l~~~ 715 (724)
+.|.-.
T Consensus 474 i~l~Kk 479 (624)
T 3lvg_A 474 VELCKK 479 (624)
T ss_dssp SSCSST
T ss_pred HHHHHh
Confidence 887544
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.67 E-value=1.4e-06 Score=100.55 Aligned_cols=194 Identities=11% Similarity=0.060 Sum_probs=119.7
Q ss_pred cccCCCceEEEEecCCEEEEEeCC-----CeEEEEecCCCeeEEE-------cCCccceeEEEEcCCCCEEEEEeCCC--
Q 004914 50 SLLANDAASCVAVAERMIALGTHA-----GTVHILDFLGNQVKEF-------PAHTAAVNDLSFDVDGEYVGSCSDDG-- 115 (724)
Q Consensus 50 ~~~~~~~i~~~s~~~~~la~g~~d-----g~I~i~d~~~~~~~~~-------~~h~~~V~~l~~s~~g~~l~s~~~Dg-- 115 (724)
.++..+.+++.+++|++++....+ +.+.+.+..+.....+ .+|...+.+++|||||++|+.++.++
T Consensus 69 ~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~ 148 (710)
T 2xdw_A 69 ELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS 148 (710)
T ss_dssp HHHCSCEECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred HhhccccCCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC
Confidence 334445556666999988766543 2445555533322222 23445788999999999998776543
Q ss_pred ---CEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe----------------EEEEecccCCcc-c
Q 004914 116 ---SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH----------------LYLNSKKWLGYR-D 174 (724)
Q Consensus 116 ---~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~----------------v~l~~~~~~~~~-~ 174 (724)
.|++||+.+++........ .+.+++|+|+ ++.|+.++.++. |.+|+.. .+.. .
T Consensus 149 ~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspD-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~-t~~~~~ 222 (710)
T 2xdw_A 149 DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHD-----GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-TDQSED 222 (710)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCCEEECTT-----SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-SCGGGC
T ss_pred ceEEEEEEECCCCCCCcccccCcccceEEEEeC-----CCEEEEEEECCccccccccccccCCCCEEEEEECC-CCcccc
Confidence 8999999998876543333 5778999999 888888877655 8888775 2222 1
Q ss_pred eEe-cc--CCCCeEEEEEe--CCEEEEE-c-----CCcEEEEEcCC------Cc-eEEEecCCCCCCCCCCCCCceeecC
Q 004914 175 QVL-HS--GEGPVHVVKWR--TSLIAWA-N-----DAGVKVYDAAN------DQ-RITFIERPRGSPRPELLLPHLVWQD 236 (724)
Q Consensus 175 ~~l-~~--~~~~V~~l~~~--~~~la~~-~-----d~~i~i~d~~~------~~-~~~~i~~~~~~~~~~~~~~~l~~~~ 236 (724)
..+ .. +...+.++.|+ |++|+.+ . +..|.+||+.+ +. ....+..+... .....+++
T Consensus 223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~------~~~~~s~d 296 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG------EYDYVTNE 296 (710)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS------CEEEEEEE
T ss_pred eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc------EEEEEecc
Confidence 222 32 34557889998 6766655 3 45799999976 42 23333322211 11222256
Q ss_pred CCeEEEE-eC----CeEEEEEEee
Q 004914 237 DTLLVIG-WG----TYIKIASIKT 255 (724)
Q Consensus 237 ~~~l~~g-~d----~~i~vw~~~~ 255 (724)
+..|+.. .. ..|.+|++.+
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTS
T ss_pred CCEEEEEECCCCCCCEEEEEeCCC
Confidence 6655544 32 2578887654
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.66 E-value=4.2e-06 Score=96.88 Aligned_cols=184 Identities=11% Similarity=0.028 Sum_probs=117.3
Q ss_pred EEEEecCCEEEEEeCC-----CeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCC--------------EE
Q 004914 58 SCVAVAERMIALGTHA-----GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS--------------VV 118 (724)
Q Consensus 58 ~~~s~~~~~la~g~~d-----g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~--------------v~ 118 (724)
.+|||||++||.++.+ ..|++||+.+........+...+.+++|+|| +.|+.++.|+. |+
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 3589999999987654 4699999965443333223333467899999 99988887654 88
Q ss_pred EEeccCCc---eEEEeC--CC-CeeEEEeCCCCCCCCCCEEEEecCCC-----eEEEEecccCC-cc-ceEeccCCCCeE
Q 004914 119 INSLFTDE---KMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAG-----HLYLNSKKWLG-YR-DQVLHSGEGPVH 185 (724)
Q Consensus 119 iwd~~~~~---~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v~l~~~~~~~-~~-~~~l~~~~~~V~ 185 (724)
+|++.++. ...+.. +. .+.++.|+|+ |++++..+.++ .+.+|+.. .+ .. ...+..+...+.
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSD-----GRWVVITSSEGTDPVNTVHVARVT-NGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTT-----SCEEEEEEECTTCSCCEEEEEEEE-TTEECCCEEEECSSSSCE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCC-----CCEEEEEEEccCCCcceEEEEECC-CCCCcccEEecCCCCceE
Confidence 99987754 233332 22 4889999999 88887776543 67777664 22 13 445555444444
Q ss_pred EEEEe-CCEEEEE-cC----CcEEEEEcCCC--ceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEe
Q 004914 186 VVKWR-TSLIAWA-ND----AGVKVYDAAND--QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 186 ~l~~~-~~~la~~-~d----~~i~i~d~~~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~ 254 (724)
...+. |..++.. ++ +.|.+||+.++ .....++... ..+..+.|.++.++++. .++..++|.+.
T Consensus 321 ~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~------~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 321 DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK------DNLESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS------SEEEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC------CeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 44344 6655544 43 34899998874 3333332221 12345667666666766 78888888776
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.66 E-value=1.2e-06 Score=87.41 Aligned_cols=184 Identities=10% Similarity=0.000 Sum_probs=118.6
Q ss_pred EEEecCCEEE-EEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC--C
Q 004914 59 CVAVAERMIA-LGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH--R 134 (724)
Q Consensus 59 ~~s~~~~~la-~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~--~ 134 (724)
+++++|++.+ +.+.++.|.+|+..+.....+ ..+...+.+++++++|+.+++.. ++.|.+||..++....+... .
T Consensus 30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~ 108 (270)
T 1rwi_B 30 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLN 108 (270)
T ss_dssp EECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCS
T ss_pred EECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcC
Confidence 4667788776 447789999999855443332 23335678899999999777666 88999999887665544332 3
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
.+.+++++|+ ++.+++...++.|.+|+.. ..............+.+++++ |++.++. .++.|.+|+..++.
T Consensus 109 ~p~~i~~~~~-----g~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 109 YPEGLAVDTQ-----GAVYVADRGNNRVVKLAAG-SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp SEEEEEECTT-----CCEEEEEGGGTEEEEECTT-CCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred CCcceEECCC-----CCEEEEECCCCEEEEEECC-CceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 7899999998 7888877778889888543 111111111222356788887 6766665 46789999988765
Q ss_pred eEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 212 RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
....... ....+..+++ .++.++++. .++.|.+|+...
T Consensus 183 ~~~~~~~------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 183 QVVLPFT------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEECCCS------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred eEeeccc------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 4432111 1123456777 456555555 577899987643
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.64 E-value=1.3e-06 Score=87.72 Aligned_cols=177 Identities=7% Similarity=0.066 Sum_probs=123.2
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCc-cceeEEEEcCCCCEEEEEeC-CCCEEEEeccCCceEEEeC---
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDEKMKFDY--- 132 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~~~~~~~--- 132 (724)
..++|+|++++ +.++.|..||.+|+.+..+..+. ..+.++.+.++|+.+++.+. ++.|..+|.....+..+..
T Consensus 42 ~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~ 119 (276)
T 3no2_A 42 VAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG 119 (276)
T ss_dssp EEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS
T ss_pred eEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC
Confidence 35778999888 45788999999998888887653 57888999999999999887 7888888875444444431
Q ss_pred ---C-CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc-CCcEEEE
Q 004914 133 ---H-RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVY 205 (724)
Q Consensus 133 ---~-~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-d~~i~i~ 205 (724)
+ .....+++.++ ++++++.+.++.|..|+.. |+....+.... ...++... |++++++. ++.|..+
T Consensus 120 ~~~~~~~~~~v~~~~~-----G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~ 191 (276)
T 3no2_A 120 IERPHAQFRQINKNKK-----GNYLVPLFATSEVREIAPN--GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQL 191 (276)
T ss_dssp CSSGGGSCSCCEECTT-----SCEEEEETTTTEEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEE
T ss_pred CCcccccccCceECCC-----CCEEEEecCCCEEEEECCC--CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEE
Confidence 1 14556778888 8999999999999999874 66655555433 34445555 67777764 5579999
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEe
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGW 244 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~ 244 (724)
|..+|+.+..+.........-.++..+.. .++.++++.+
T Consensus 192 d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 192 NLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999998887643211111112333333 5667766664
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.63 E-value=7e-07 Score=92.35 Aligned_cols=181 Identities=13% Similarity=0.094 Sum_probs=122.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe-CCC-Ce
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD-YHR-PM 136 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~-~~~-~v 136 (724)
++++++..++..+.++.++.| .+.....+..+...+.+++|+++|+.++++..++.|.+||..++....+. .+. .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 89 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP 89 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred eecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence 355556566666777888888 34555666677777899999999998888889999999999988776543 344 89
Q ss_pred eEEEeCCCCCCCCCCEEEEecCC----CeEEEEecccCCccce-Eec--cCCCCeEEEEEe--CCEEEEEcC-------C
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLA----GHLYLNSKKWLGYRDQ-VLH--SGEGPVHVVKWR--TSLIAWAND-------A 200 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~d----g~v~l~~~~~~~~~~~-~l~--~~~~~V~~l~~~--~~~la~~~d-------~ 200 (724)
.+++++|+ ++.++++..+ +.|.+|+.. +.... .+. .....+.++.++ |.+++++.. +
T Consensus 90 ~~i~~~~d-----g~l~v~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 90 AAIKIHKD-----GRLFVCYLGDFKSTGGIFAATEN--GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp EEEEECTT-----SCEEEEECTTSSSCCEEEEECTT--SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred ceEEECCC-----CcEEEEeCCCCCCCceEEEEeCC--CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 99999999 7777777665 678887654 32222 222 234568889998 677666642 4
Q ss_pred cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 201 ~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
.|..|+..+++........ ..+..++| +++..+.++ .++.|++|++.+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQNI-------SVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEEECTTSCCEEEEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eEEEEeCCCCEEEEeecCC-------CcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 4666665554443322110 12446778 566655554 578899999864
No 196
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.63 E-value=1.2e-07 Score=100.55 Aligned_cols=183 Identities=9% Similarity=0.030 Sum_probs=117.1
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeE-------------------EEEcCCCCEEEEE-----e
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVND-------------------LSFDVDGEYVGSC-----S 112 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~-------------------l~~s~~g~~l~s~-----~ 112 (724)
..|+|+|+.|++++.++.|++||..+... .....+...... +.|+|+|+.++.+ .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 46899999999999999999999955443 333334332222 3567777766554 3
Q ss_pred CCCCEEEEeccCCceEEEeCCC-CeeEEEeCC-CCCCCCCCEEEEecCCC------eEEEEecccCCccceEeccC--CC
Q 004914 113 DDGSVVINSLFTDEKMKFDYHR-PMKAISLDP-DYTRKMSRRFVAGGLAG------HLYLNSKKWLGYRDQVLHSG--EG 182 (724)
Q Consensus 113 ~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p-~~~~~~~~~l~~g~~dg------~v~l~~~~~~~~~~~~l~~~--~~ 182 (724)
.++.|.+||+.+++...+..+. .+..++|+| + ++.++..+.++ .+.+++. .+.....+..+ ..
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~d-----g~~l~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~ 238 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFD-----DSTVGFCHEGPHDLVDARMWLVNE--DGSNVRKIKEHAEGE 238 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE-----EEEEEEEECSCSSSCSCCCEEEET--TSCCCEESSCCCTTE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCC-----CCEEEEEecCCCCCCCceEEEEEC--CCCceeEeeccCCCc
Confidence 5668999999988776554444 889999999 6 56666654433 4555554 34433444333 23
Q ss_pred CeEEEEEe--CCEEEEE-cC-----CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-c-CCCeEEEEe--------
Q 004914 183 PVHVVKWR--TSLIAWA-ND-----AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-Q-DDTLLVIGW-------- 244 (724)
Q Consensus 183 ~V~~l~~~--~~~la~~-~d-----~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~-~~~~l~~g~-------- 244 (724)
.+..+.|+ |+.|+.+ .+ +.|++||+.+++.......+. .. ..| + ++..++++.
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--------~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--------CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--------EE-EEEECSSSSEEEEEECCC-----
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--------CC-CCccCCCCceEEEecCCcceeec
Confidence 57788998 5654444 32 339999998887554322221 11 667 5 777777642
Q ss_pred ---------CCeEEEEEEeeC
Q 004914 245 ---------GTYIKIASIKTN 256 (724)
Q Consensus 245 ---------d~~i~vw~~~~~ 256 (724)
+..|++||+.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp -----CCCCCCEEEEEETTTT
T ss_pred cccccccCCCCcEEEEecccC
Confidence 356888887553
No 197
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=2.8e-07 Score=97.69 Aligned_cols=186 Identities=11% Similarity=0.027 Sum_probs=115.6
Q ss_pred EEEecCCEEEEEeCC---CeEEEEecCCCeeEEEcCCcccee-EEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC-C
Q 004914 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY-H 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~d---g~I~i~d~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~-~ 133 (724)
+|+|+|+.|+++... ..|.+||..+.....+..+...+. .+.|+|+|++|+.++.++.+++||+.+++...+.. +
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 689999998877543 478888987666555554444433 47899999999999999999999999877654322 2
Q ss_pred C-CeeE-------------------EEeCCCCCCCCCCEEEEe-----cCCCeEEEEecccCCccceEeccCCCCeEEEE
Q 004914 134 R-PMKA-------------------ISLDPDYTRKMSRRFVAG-----GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK 188 (724)
Q Consensus 134 ~-~v~~-------------------v~~~p~~~~~~~~~l~~g-----~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~ 188 (724)
. .... ++|+|+ ++.++.+ ..++.+.+|+.. +.....+..+...+..+.
T Consensus 122 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-----g~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 122 EEWKGYGTWVANSDCTKLVGIEILKRDWQPL-----TSWEKFAEFYHTNPTCRLIKVDIE--TGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-----CSHHHHHHHHHTCCCEEEEEEETT--TCCEEEEEEESSCEEEEE
T ss_pred cccCCCCCEEEeccCCccccccccccccCCC-----CcceeeeeeccCCCcceEEEEECC--CCcEEeeccCCcccccce
Confidence 2 2212 345666 5555543 344567777654 233333445566788899
Q ss_pred EeC---CEEEEE-cC------CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC-----CeEEEE
Q 004914 189 WRT---SLIAWA-ND------AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG-----TYIKIA 251 (724)
Q Consensus 189 ~~~---~~la~~-~d------~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d-----~~i~vw 251 (724)
|++ ..++.. .+ ..|.+|++.+++...... +. ....+..+.| ++++.|+.+ .+ +.|++|
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HA----EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CC----TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cC----CCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 974 445444 32 358888887655332211 10 0112445678 577766555 32 348999
Q ss_pred EEeeC
Q 004914 252 SIKTN 256 (724)
Q Consensus 252 ~~~~~ 256 (724)
|+.++
T Consensus 270 d~~~g 274 (396)
T 3c5m_A 270 NPETL 274 (396)
T ss_dssp CTTTC
T ss_pred ECCCC
Confidence 87553
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.54 E-value=4.8e-06 Score=92.40 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=123.6
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEecc--CCce-EEEeCCCCee
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF--TDEK-MKFDYHRPMK 137 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~--~~~~-~~~~~~~~v~ 137 (724)
+.+.++++...+++|.++|. +++.+..+... ..+.++.|+|+|+++.+++.||.|.+||+. +.+. ..+.......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 44556777788999999999 45556666543 356789999999999999999999999995 5444 4555555668
Q ss_pred EEEeC----CCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccC-----------CCCeEEEEEe---CCEEEEE-
Q 004914 138 AISLD----PDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSG-----------EGPVHVVKWR---TSLIAWA- 197 (724)
Q Consensus 138 ~v~~~----p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~-----------~~~V~~l~~~---~~~la~~- 197 (724)
.++|+ |+ |+++++++ .++.+.+++.. .......+... ...+.++..+ +.+++..
T Consensus 244 ~ia~s~~~~pD-----Gk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 244 SIETSKMEGWE-----DKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp EEEECCSTTCT-----TTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred eeEEccccCCC-----CCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 99999 68 77666654 55889998754 33333333311 1256677766 2344444
Q ss_pred cCCcEEEEEcCCCceEE--EecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 198 NDAGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~--~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
.++.|.++|..+.+... .+... .+...+.| +++++++++ .++.|.++|+.++.
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~-------~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAE-------RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECC-------SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCCeEEEEecCCCccceeeeeecc-------ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 56889999987654332 22211 13445667 677777666 67899999987764
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.52 E-value=9e-06 Score=94.10 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=113.1
Q ss_pred ccCCCceEEEEecCCEEEEEeCCCe---EEEE--ecC---CCeeEEE-------cCCccceeEEEEcCCCCEEEEEeCC-
Q 004914 51 LLANDAASCVAVAERMIALGTHAGT---VHIL--DFL---GNQVKEF-------PAHTAAVNDLSFDVDGEYVGSCSDD- 114 (724)
Q Consensus 51 ~~~~~~i~~~s~~~~~la~g~~dg~---I~i~--d~~---~~~~~~~-------~~h~~~V~~l~~s~~g~~l~s~~~D- 114 (724)
....+.+++.+++|++++....++. -.+| +.. +.....+ .+|...+.+++|||||++|+.++.+
T Consensus 105 ~~~~~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~ 184 (741)
T 1yr2_A 105 LIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG 184 (741)
T ss_dssp HSCCCEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET
T ss_pred hhcccccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC
Confidence 3344556667799998887765432 3444 443 4333332 2244478899999999999877654
Q ss_pred C----CEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCCCe--------------EEEEecccCCc-cc
Q 004914 115 G----SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH--------------LYLNSKKWLGY-RD 174 (724)
Q Consensus 115 g----~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~--------------v~l~~~~~~~~-~~ 174 (724)
| .|++||+.+++......+. .+.+++|+|+ +.|+.++.++. |.+|+.. .+. ..
T Consensus 185 G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD------~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~ 257 (741)
T 1yr2_A 185 GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN------DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG-TPQSAD 257 (741)
T ss_dssp TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT------SEEEEEECCCC--------CCCCCEEEEEETT-SCGGGC
T ss_pred CCceEEEEEEECCCCCCCCccCCCceeccEEEECC------CEEEEEEecCcccccccccCCCCCEEEEEECC-CCchhC
Confidence 3 5999999998876543333 3467899998 45555554433 7777664 222 12
Q ss_pred eEe-ccC--CCCeEEEEEe--CCEEEEE-cCC-----cEEEEEcCCC--ceEEEecCCCCCCCCCCCCCceeecCCCeEE
Q 004914 175 QVL-HSG--EGPVHVVKWR--TSLIAWA-NDA-----GVKVYDAAND--QRITFIERPRGSPRPELLLPHLVWQDDTLLV 241 (724)
Q Consensus 175 ~~l-~~~--~~~V~~l~~~--~~~la~~-~d~-----~i~i~d~~~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~ 241 (724)
..+ ... ...+.++.|+ |++|+.+ .++ .|++||+.++ +....+..+... .....++++..|+
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------~~~~~~~dg~~l~ 331 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA------QWDFVDGVGDQLW 331 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS------CEEEEEEETTEEE
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc------eEEEEeccCCEEE
Confidence 223 222 2358889999 6666655 433 6999999876 312333222211 1222346677666
Q ss_pred EE-e----CCeEEEEEEee
Q 004914 242 IG-W----GTYIKIASIKT 255 (724)
Q Consensus 242 ~g-~----d~~i~vw~~~~ 255 (724)
.. . +..|.+|++.+
T Consensus 332 ~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEECTTCTTCEEEEEECSS
T ss_pred EEECCCCCCCEEEEEeCCC
Confidence 65 3 23488887654
No 200
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.49 E-value=3.6e-06 Score=87.44 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=109.3
Q ss_pred EEEecCCEEEEEeC---------------------------CCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEE
Q 004914 59 CVAVAERMIALGTH---------------------------AGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGS 110 (724)
Q Consensus 59 ~~s~~~~~la~g~~---------------------------dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s 110 (724)
+|+|+|+.|++++. .+.|++||+.+... ..+.. . .+.+++|+|+| .+++
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEE
Confidence 58899998888764 25789999965544 55554 3 78899999999 7777
Q ss_pred EeCCC-------CEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCC--------CeEEEEecccCCccce
Q 004914 111 CSDDG-------SVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLA--------GHLYLNSKKWLGYRDQ 175 (724)
Q Consensus 111 ~~~Dg-------~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~d--------g~v~l~~~~~~~~~~~ 175 (724)
++.++ ...+|.+.+++...+..+..+.++ +|+ |+.++.++.+ +.+.+|+ .+....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~--spd-----g~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~ 256 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAV--DSD-----GERILLYGKPEKKYMSEHNKLYIYD---GKEVMG 256 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEEEEEEESEEEE--EEC-----SSCEEEEECCSSSCCCSSCEEEEEC---SSCEEE
T ss_pred EecccccccccccccEEEeCCCceEEeccCcceeeE--CCC-----CCEEEEEEccccCCccccceEEEEC---CCceEe
Confidence 76542 445555546555444322333333 888 7777776643 3566655 343333
Q ss_pred EeccCCCCeEE-EEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeE-EEE
Q 004914 176 VLHSGEGPVHV-VKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYI-KIA 251 (724)
Q Consensus 176 ~l~~~~~~V~~-l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i-~vw 251 (724)
....+...+.. +.|++.+++++ .++.+++| +.+++....... ...+..+.|+. ..++++ .++.. .+|
T Consensus 257 l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~~~~~~~~-------~~~v~~~~~s~-~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGEIKPIAKG-------RHWIMGFDVDE-IVVYLKETATRLRELF 327 (347)
T ss_dssp SSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSSEEEEECS-------SSEEEEEEESS-SEEEEEECSSSCCEEE
T ss_pred ccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCceEEEecC-------CCeEEeeeeeC-cEEEEEcCCCChHHhe
Confidence 34455677886 88883366665 68889999 876655433221 12355677755 666665 45543 777
Q ss_pred EEe
Q 004914 252 SIK 254 (724)
Q Consensus 252 ~~~ 254 (724)
.+.
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 765
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.47 E-value=6.9e-06 Score=84.81 Aligned_cols=184 Identities=9% Similarity=-0.042 Sum_probs=122.9
Q ss_pred EEEecCC-EEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC-
Q 004914 59 CVAVAER-MIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR- 134 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~- 134 (724)
.+..+++ ..++...++.|.+||. +++.+..+. .......++++++|+.+++...++.|.+||..++++. .+....
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~ 126 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM 126 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc
Confidence 3444444 5555556799999999 566667774 3456788999999965556558999999999987765 444333
Q ss_pred -----CeeEEEeCCCCCCCCCCEEEEec-CCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEc-C------
Q 004914 135 -----PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-D------ 199 (724)
Q Consensus 135 -----~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~-d------ 199 (724)
....+++ .+ +..+++.. .++.|.+++.. .+.....+..... ..++.++ |++++++. +
T Consensus 127 ~~~~~~p~~i~~-~~-----~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 127 DMESGSTEQMVQ-YG-----KYVYVNCWSYQNRILKIDTE-TDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp CTTTCBCCCEEE-ET-----TEEEEEECTTCCEEEEEETT-TTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred cccCCCcceEEE-EC-----CEEEEEcCCCCCEEEEEECC-CCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCcc
Confidence 5667777 33 45555554 47899998865 3443444443332 3567776 56666553 3
Q ss_pred ----CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 200 ----AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ----~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+.|.+||..+++....+..+.+ ..+..+++ +++..+.++.. .|.+||..++.
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~ 255 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADR 255 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSS
T ss_pred ccCCceEEEEECCCCeEEEEEecCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCc
Confidence 6799999999988877655432 13556788 46777777744 88888876654
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.44 E-value=6.5e-05 Score=75.69 Aligned_cols=183 Identities=7% Similarity=-0.011 Sum_probs=120.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEE-EcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe--CCC-C
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKE-FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD--YHR-P 135 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~--~~~-~ 135 (724)
+.++|++.++...++.|..||.++..... ...+...+.+++++++|+.+++...++.|..||. ++....+. ... .
T Consensus 106 ~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 106 EGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASG 184 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred ECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCc
Confidence 44567777777778899999996554322 2234557899999999998888877889999999 66665442 223 7
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCc
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~ 211 (724)
+.+++++++ +..+++...++.+..++. .+..... .......+.+++++ |.+.++. .++.|..||. ++.
T Consensus 185 ~~~i~~~~~-----g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 185 PVGITKGND-----DALWFVEIIGNKIGRITT--SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp EEEEEECTT-----SSEEEEETTTTEEEEECT--TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred ceeEEECCC-----CCEEEEccCCceEEEECC--CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence 889999998 777777777788888876 2332221 22344568889987 6766666 5788999998 444
Q ss_pred eEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeC
Q 004914 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
+..+..+.. ...+.++.+.++.++++...+.+..++..++
T Consensus 257 -~~~~~~~~~----~~~~~~i~~~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 257 -IEEYPIQIK----SAEPHGICFDGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp -EEEEECSSS----SCCEEEEEECSSCEEEEETTTEEEEEEEC--
T ss_pred -eEEEeCCCC----CCccceEEecCCCEEEEecCCcEEEEEcCcc
Confidence 333322211 1234455664555555446777877777653
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.42 E-value=6.2e-05 Score=75.80 Aligned_cols=179 Identities=8% Similarity=0.001 Sum_probs=120.8
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEc--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--CC-
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~- 134 (724)
++++|++.++...++.|..|+.++.. ..+. .....+.+++++++|..+++...++.|.+||. ++....+.. ..
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~ 141 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKKGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGS 141 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred ECCCCCEEEeCCCCCeEEEECCCCcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCC
Confidence 44567777776668899999987553 3332 24557899999999998888878899999999 655554432 23
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~ 210 (724)
.+.+++++|+ ++.+++...++.+..++. .+..... .......+.++++. |.+.++. .++.|.+|+. ++
T Consensus 142 ~~~~i~~~~~-----g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 142 YPSFITLGSD-----NALWFTENQNNAIGRITE--SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp CEEEEEECTT-----SCEEEEETTTTEEEEECT--TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCceEEEcCC-----CCEEEEeCCCCEEEEEcC--CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence 7899999998 777777777788888766 3332222 22334567888887 6766665 4778999998 66
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
.... +..+. ....+..+.+ .++.++++. .++.|.+|+.
T Consensus 214 ~~~~-~~~~~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 214 EITE-FKIPT----PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CEEE-EECSS----TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred cEEE-EECCC----CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 5433 32221 1123445666 456655555 5678988875
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.39 E-value=2.6e-05 Score=79.48 Aligned_cols=183 Identities=12% Similarity=0.098 Sum_probs=115.7
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEE-cC-----CccceeEEEEcCCCCEEEEEeCC---------------CCEE
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEF-PA-----HTAAVNDLSFDVDGEYVGSCSDD---------------GSVV 118 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~-~~-----h~~~V~~l~~s~~g~~l~s~~~D---------------g~v~ 118 (724)
+++++..+.+++..+.|.+||..+. ...+ .. +...+.+++++++|+.+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 4456234444554557889998844 3333 21 12458899999999988877665 5677
Q ss_pred EEeccCCceEEEeCC-CCeeEEEeC----CCCCCCCCCE-EEEecCCCeEEEEecccCCc-----cceEeccCC-CCeEE
Q 004914 119 INSLFTDEKMKFDYH-RPMKAISLD----PDYTRKMSRR-FVAGGLAGHLYLNSKKWLGY-----RDQVLHSGE-GPVHV 186 (724)
Q Consensus 119 iwd~~~~~~~~~~~~-~~v~~v~~~----p~~~~~~~~~-l~~g~~dg~v~l~~~~~~~~-----~~~~l~~~~-~~V~~ 186 (724)
.|+.. +....+..+ ....+++|+ |+ ++. +++...++.|.+|+..-.+. ....+..+. +.+.+
T Consensus 157 ~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~d-----g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 157 CFTTD-GQMIQVDTAFQFPNGIAVRHMNDGR-----PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EECTT-SCEEEEEEEESSEEEEEEEECTTSC-----EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred EECCC-CCEEEeccCCCCcceEEEecccCCC-----CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 77765 554443222 266889999 88 654 45556678899887531121 111222232 55788
Q ss_pred EEEe--CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 187 VKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 187 l~~~--~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
++++ |.+.++. .++.|.+||..+++.+..+..+. ..+.++++ +++..|.++ .++.|..|++..
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~------~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF------EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS------SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC------CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8888 6766665 67899999998777665554332 23566777 567756555 456899888764
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.36 E-value=5e-05 Score=84.18 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=125.3
Q ss_pred EEEEecCCEEEEEeCCCeEEEEec---CCCeeEEEcCCccceeEEEEc----CCCCEEEEEeC-CCCEEEEeccCCceEE
Q 004914 58 SCVAVAERMIALGTHAGTVHILDF---LGNQVKEFPAHTAAVNDLSFD----VDGEYVGSCSD-DGSVVINSLFTDEKMK 129 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~---~~~~~~~~~~h~~~V~~l~~s----~~g~~l~s~~~-Dg~v~iwd~~~~~~~~ 129 (724)
..++|+|+++.+++.+|.|.+||+ +++.+..+..... ...++|+ |+|+++++++. +++|.++|..+.+...
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 458899999999999999999999 4555666665443 5689999 69998776654 6999999988866542
Q ss_pred -EeC----------C-C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc-cceEeccCCCCeEEEEEe--CCE
Q 004914 130 -FDY----------H-R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY-RDQVLHSGEGPVHVVKWR--TSL 193 (724)
Q Consensus 130 -~~~----------~-~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~-~~~~l~~~~~~V~~l~~~--~~~ 193 (724)
+.. + . .+.++..+++ +...++....+|.|.+++..-... ....+ ........+.|+ |++
T Consensus 281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~----~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 281 IQSTRGMTYDEQEYHPEPRVAAILASHY----RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRY 355 (567)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCE
T ss_pred EEeccccccccccccCCCceEEEEEcCC----CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCE
Confidence 221 1 2 5678888887 245566667778888876531111 11122 123346677888 676
Q ss_pred EEEE--cCCcEEEEEcCCCceEEEecC-CCCCCCCCCCCCceee--cC-CCeEEEE--eCCeEEEEEEeeC
Q 004914 194 IAWA--NDAGVKVYDAANDQRITFIER-PRGSPRPELLLPHLVW--QD-DTLLVIG--WGTYIKIASIKTN 256 (724)
Q Consensus 194 la~~--~d~~i~i~d~~~~~~~~~i~~-~~~~~~~~~~~~~l~~--~~-~~~l~~g--~d~~i~vw~~~~~ 256 (724)
+.++ .++.|.++|+.+++.+..++. .. .+... ....| ++ +..++++ .++.|.+++..+.
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-~Phpg---~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQ-TPHPG---RGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSS-SBCCT---TCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCc-CCCCc---cceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 6555 478899999999998887764 22 11111 12223 33 4455566 4589999998763
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.31 E-value=1.7e-05 Score=80.94 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=113.5
Q ss_pred EEEEecCCEEEE-------EeCCCeEEEEecCCCeeEEEcC-----CccceeEEEEcCC-CCEEEEEeCCCCEEEEeccC
Q 004914 58 SCVAVAERMIAL-------GTHAGTVHILDFLGNQVKEFPA-----HTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFT 124 (724)
Q Consensus 58 ~~~s~~~~~la~-------g~~dg~I~i~d~~~~~~~~~~~-----h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~ 124 (724)
.+|+++++++++ ++.++.|.+||........+.. +...+.+++++++ |+.+++.. .+.|.+||..
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~- 100 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD- 100 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-
Confidence 357778887777 6778999999974433334332 5567899999999 76555554 4478899988
Q ss_pred CceEEE-eC----C-C-CeeEEEeCCCCCCCCCCEEEEecCC---------------CeEEEEecccCCccceEeccCCC
Q 004914 125 DEKMKF-DY----H-R-PMKAISLDPDYTRKMSRRFVAGGLA---------------GHLYLNSKKWLGYRDQVLHSGEG 182 (724)
Q Consensus 125 ~~~~~~-~~----~-~-~v~~v~~~p~~~~~~~~~l~~g~~d---------------g~v~l~~~~~~~~~~~~l~~~~~ 182 (724)
++...+ .. . . .+.+++++|+ ++.+++...+ +.+..++.. +. ...+..+..
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~i~~d~~-----g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~ 172 (314)
T 1pjx_A 101 GTFEEIAKKDSEGRRMQGCNDCAFDYE-----GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDTAFQ 172 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTT-----SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEEEES
T ss_pred CCEEEEEeccCCCccccCCcCEEECCC-----CCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEeccCCC
Confidence 666544 21 1 1 5889999998 7777776554 456555442 32 222222333
Q ss_pred CeEEEEEe----C--CEEEEE--cCCcEEEEEcC-CCceEE--Ee-cCCCCCCCCC-CCCCceee-cCCCeEEEE-eCCe
Q 004914 183 PVHVVKWR----T--SLIAWA--NDAGVKVYDAA-NDQRIT--FI-ERPRGSPRPE-LLLPHLVW-QDDTLLVIG-WGTY 247 (724)
Q Consensus 183 ~V~~l~~~----~--~~la~~--~d~~i~i~d~~-~~~~~~--~i-~~~~~~~~~~-~~~~~l~~-~~~~~l~~g-~d~~ 247 (724)
...+++|+ + +.+.++ .++.|.+|+.. +++... .+ ..+. +. ..+..+++ .++.++++. .++.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG----THEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC----CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC----CCCCCCCceEECCCCCEEEEEcCCCE
Confidence 45778887 4 344444 46889999986 443211 11 1111 11 12445667 466666665 5778
Q ss_pred EEEEEEee
Q 004914 248 IKIASIKT 255 (724)
Q Consensus 248 i~vw~~~~ 255 (724)
|.+|+..+
T Consensus 249 i~~~d~~~ 256 (314)
T 1pjx_A 249 IEVFGPDG 256 (314)
T ss_dssp EEEECTTC
T ss_pred EEEEcCCC
Confidence 99997653
No 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.26 E-value=4.5e-05 Score=78.66 Aligned_cols=184 Identities=8% Similarity=-0.017 Sum_probs=114.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCc-----cceeEEEEcCCCCEEEEEe-CCCCEEEEeccCCceE-EE
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHT-----AAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDEKM-KF 130 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~-----~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~~~-~~ 130 (724)
+++++++..++...++.|.+||..... ...+.... .....+++ .++..+++.. .++.|.++|..++++. .+
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 466777554444478999999995444 44554332 14566777 3444444444 4889999999987764 44
Q ss_pred eCCCCeeEEEeCCCCCCCCCCEEEEecCC----------CeEEEEecccCCccceEeccC-CCCeEEEEEe--CCEEEEE
Q 004914 131 DYHRPMKAISLDPDYTRKMSRRFVAGGLA----------GHLYLNSKKWLGYRDQVLHSG-EGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g~~d----------g~v~l~~~~~~~~~~~~l~~~-~~~V~~l~~~--~~~la~~ 197 (724)
.......+++++|+ ++.++++..+ +.|.+++.. .+.....+... .....+++++ ++.+.++
T Consensus 169 ~~g~~p~~i~~~~d-----G~l~v~~~~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 169 TIGIQPTSLVMDKY-----NKMWTITDGGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp ECSSCBCCCEECTT-----SEEEEEBCCBCTTCSSCBCCCEEEEEETT-TTEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred EcCCCccceEEcCC-----CCEEEEECCCccCCccccCCceEEEEECC-CCeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence 44446678999998 7777666554 688888764 23333333322 2357889999 5777776
Q ss_pred cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec--CCCeEEEE-----eCCeEEEEEEe
Q 004914 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-----WGTYIKIASIK 254 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-----~d~~i~vw~~~ 254 (724)
+. .|.+||..+++.......+ .....+..+++. ++.++++. .++.|.+|+..
T Consensus 243 ~~-~v~~~d~~t~~~~~~~~~~----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 NN-DIWRMPVEADRVPVRPFLE----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SS-SEEEEETTCSSCCSSCSBC----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred cc-EEEEEECCCCceeeeeeec----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 44 9999999887753210000 012235567773 44555554 25678888765
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.23 E-value=0.00023 Score=71.57 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=119.7
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEE--cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--CC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR 134 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~ 134 (724)
+++++|++.++...++.|.+||..+. ...+ ..+...+.+++++++|+.+++...++.|..+|.. +....+.. ..
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~ 103 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQSGR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD 103 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred eECCCCCEEEEcCCCCeEEEECCCCc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC
Confidence 35567777777667899999998844 3333 2334678999999999988887778899999988 65554432 23
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce-EeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ-VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~-~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
.+.+++++++ ++.+++...++.+..++.. +.... .+......+.++++. |++.++. .++.|..|+. +
T Consensus 104 ~~~~~i~~~~~-----g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 104 SGPYGITEGLN-----GDIWFTQLNGDRIGKLTAD--GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp CCEEEEEECST-----TCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCccceECCC-----CCEEEEccCCCeEEEECCC--CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 7899999988 7888877777888887654 32221 122234567888887 6766555 3678999998 5
Q ss_pred CceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 210 DQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
++... +..+.. ...+..+.+ .++.++++. .++.|.+|+.
T Consensus 176 g~~~~-~~~~~~----~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 176 GKLEE-YPLPTN----AAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CCEEE-EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CcEEE-eeCCCC----CCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 55443 322211 123445666 456655555 4567888875
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.20 E-value=4.6e-07 Score=95.38 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=95.5
Q ss_pred EecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC--Ce
Q 004914 61 AVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR--PM 136 (724)
Q Consensus 61 s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~--~v 136 (724)
..+++.+++|+.+|.|+.||. +|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. ..+..+. .+
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 347889999999999999998 7887777665 4565555667787888888999999999988664 3343322 11
Q ss_pred eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCC-EEEEEcCCcEEEEEcCCCceEEE
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTS-LIAWANDAGVKVYDAANDQRITF 215 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~-~la~~~d~~i~i~d~~~~~~~~~ 215 (724)
. .+|-.. .+..+++|+.+|.++.|+.. +|.....+..+.. +.. +-.+. +++++.++.++.||..+|+.+..
T Consensus 84 ~---~sp~~~--~~~~v~~g~~dg~v~a~D~~-tG~~~w~~~~~~~-~~~-~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 84 Q---ASPCRS--SDGILYMGKKQDIWYVIDLL-TGEKQQTLSSAFA-DSL-SPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp T---TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred c---cCceEe--cCCEEEEEeCCCEEEEEECC-CCcEEEEecCCCc-ccc-cccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 1 112100 13567788888999998764 4544433333221 111 11344 44445789999999999887654
Q ss_pred ecCCCCCCCCCCCCCceee---cCCCeEEEEeCCeEEEEEEeeCC
Q 004914 216 IERPRGSPRPELLLPHLVW---QDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~---~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
+..... ..+.+.- .++..++.+.++.|+.||..++.
T Consensus 156 ~~~~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 156 ATYFDY------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEEEE------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred Eecccc------cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 432110 0111110 11444444488999999987643
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.19 E-value=7.7e-05 Score=75.62 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=113.2
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCC----
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH---- 133 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~---- 133 (724)
.|+++ +.++++...++.|+.||..+.....+. ....+.+++++++|+++++. ++.|.+||..++....+...
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDK 95 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTC
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCC
Confidence 57775 456677778899999999665554443 44679999999999965554 56899999988776543211
Q ss_pred -C-CeeEEEeCCCCCCCCCCEEEEecCC---------CeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--c
Q 004914 134 -R-PMKAISLDPDYTRKMSRRFVAGGLA---------GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--N 198 (724)
Q Consensus 134 -~-~v~~v~~~p~~~~~~~~~l~~g~~d---------g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~ 198 (724)
. .++.++++|+ ++.+++.... +.-.+|...-.+. ...+........+++|+ ++.+.++ .
T Consensus 96 ~~~~~~di~~d~d-----G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 96 KNNRFNDGKVDPA-----GRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp SSEEEEEEEECTT-----SCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCEEECCC-----CCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEecCC
Confidence 2 5788999999 7766554221 2234444332232 22223333446789998 5656554 3
Q ss_pred CCcEEEEEc--CCCceEE--Ee-cCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 199 DAGVKVYDA--ANDQRIT--FI-ERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 199 d~~i~i~d~--~~~~~~~--~i-~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
++.|.+|++ .++.... .+ .... ....+..+++ .++.+.++. .++.|.+|+..+
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~----~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEK----EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCG----GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCC----CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 678999987 4554321 11 1111 1113445666 566666665 456788887654
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.18 E-value=0.00018 Score=74.03 Aligned_cols=181 Identities=8% Similarity=-0.034 Sum_probs=110.8
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC----C
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY----H 133 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~----~ 133 (724)
+|+++ +..+.++..++.|..||..+.....+. ....+.++.|+++|++++++ .+ .|.+||..++....+.. .
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence 58886 456677778899999999766655443 34579999999999877765 44 49999998877654422 1
Q ss_pred -C-CeeEEEeCCCCCCCCCCEEEEecCC----CeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEE
Q 004914 134 -R-PMKAISLDPDYTRKMSRRFVAGGLA----GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVK 203 (724)
Q Consensus 134 -~-~v~~v~~~p~~~~~~~~~l~~g~~d----g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~ 203 (724)
. .+++++++|+ ++.+++...+ +...+|... .+. ...+........+++|+ ++.+.++ .++.|.
T Consensus 132 ~~~~~~~i~~d~~-----G~l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 132 PGNRSNDGRMHPS-----GALWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp TTEEEEEEEECTT-----SCEEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCEEECCC-----CCEEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 2 5889999999 6766554321 223344333 332 22222233456788998 5555554 367899
Q ss_pred EEEcC--CC-ceE--EEe-cCCCCCCCCCCCCCceee-cCCCeEEEEe-CCeEEEEEE
Q 004914 204 VYDAA--ND-QRI--TFI-ERPRGSPRPELLLPHLVW-QDDTLLVIGW-GTYIKIASI 253 (724)
Q Consensus 204 i~d~~--~~-~~~--~~i-~~~~~~~~~~~~~~~l~~-~~~~~l~~g~-d~~i~vw~~ 253 (724)
+|++. ++ ... ..+ .... ....+..+++ .++.+.++.+ ++.|.+|+.
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~----~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTG----IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTT----SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEcccccCCcccCceEEEECCC----CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 99986 55 311 111 1110 1112345666 4565555554 577888865
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.16 E-value=0.00018 Score=82.42 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=91.1
Q ss_pred EEEecCCEEEEEe-----CCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCC-------------EEEE
Q 004914 59 CVAVAERMIALGT-----HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS-------------VVIN 120 (724)
Q Consensus 59 ~~s~~~~~la~g~-----~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~-------------v~iw 120 (724)
+|||+|++||.+. ....|++||+.+........+.....+++|+ ||+.|+.++.++. |++|
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 5899999998653 2357999999544322221121123567899 9999999888744 9999
Q ss_pred eccCCc---eEEE--eC-CC-CeeEEEeCCCCCCCCCCEEEEecC----CCeEEEEecccCCccceEeccCCCCeEEE-E
Q 004914 121 SLFTDE---KMKF--DY-HR-PMKAISLDPDYTRKMSRRFVAGGL----AGHLYLNSKKWLGYRDQVLHSGEGPVHVV-K 188 (724)
Q Consensus 121 d~~~~~---~~~~--~~-~~-~v~~v~~~p~~~~~~~~~l~~g~~----dg~v~l~~~~~~~~~~~~l~~~~~~V~~l-~ 188 (724)
++.++. ...+ .. +. .+.++.|+|+ +++++.... .+.+.+++..-.......+..+....... .
T Consensus 214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-----g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~ 288 (693)
T 3iuj_A 214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTED-----DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVD 288 (693)
T ss_dssp ETTSCGGGCEEEESCSGGGCCSEEEEEECTT-----SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEE
T ss_pred ECCCCcccceEEEecCCCCCeEEEEEEEcCC-----CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEe
Confidence 998744 2222 22 23 5788999999 777654332 24677776542122445555555555443 2
Q ss_pred EeC-CEEEEEc-C---CcEEEEEcCCCce
Q 004914 189 WRT-SLIAWAN-D---AGVKVYDAANDQR 212 (724)
Q Consensus 189 ~~~-~~la~~~-d---~~i~i~d~~~~~~ 212 (724)
..| .+++.++ + +.|..+++.++..
T Consensus 289 ~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 289 NKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp EETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 235 4555553 2 4688889887643
No 213
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.16 E-value=0.01 Score=61.31 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=168.9
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCCC--
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-- 134 (724)
++|..+.||.-. ..++.|||+..+. ++.+.-. ..|.--.|-.+. .|+-.+ +..|..|++.+ .....+..|.
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhc
Confidence 778888888775 7899999996554 4554433 456666665443 344443 45899999965 3444454432
Q ss_pred ---CeeEEEeCCCCCCCCCCEEEEec-------CCCeEEEEecccCCccceEeccCCCCeEEEEEeC-----CEEEEEc-
Q 004914 135 ---PMKAISLDPDYTRKMSRRFVAGG-------LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-----SLIAWAN- 198 (724)
Q Consensus 135 ---~v~~v~~~p~~~~~~~~~l~~g~-------~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-----~~la~~~- 198 (724)
.|..-..+++ .++++..+ ..|.+.+|+.. ....+.+.+|.+.-..+...| .+++.+.
T Consensus 149 ~~~QIInY~~d~~-----~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 149 AGCQIINYRTDAK-----QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp TTCEEEEEEECTT-----SSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ccceEEEEEECCC-----CCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 6667777787 67776443 23567777764 455666677655444444333 3444442
Q ss_pred ---CCcEEEEEcCCC--------ceEEEecCCCCCCCCCCCCCceeec--CCCeEEEEeCCeEEEEEEeeCCCCCCCCcc
Q 004914 199 ---DAGVKVYDAAND--------QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIGWGTYIKIASIKTNQSNVANGTY 265 (724)
Q Consensus 199 ---d~~i~i~d~~~~--------~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~ 265 (724)
.+.+.|.++... +....+..|. .....++-++..+ -+-.+++...|.|+++|+.++....
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp--e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~----- 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY----- 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCT--TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCc--ccccCceeEEEecccCCEEEEEecCceEEEEecccceeee-----
Confidence 256777777432 1111111111 1112223333332 2334445577777777776643110
Q ss_pred ccCCCeEEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccCC
Q 004914 266 RHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVL 345 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~gi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv~~~~~~~~~~~~~~~ 345 (724)
. ..|+. +.+.+.+..
T Consensus 295 ----------~---------nrIs~--~~iF~t~~~-------------------------------------------- 309 (494)
T 1bpo_A 295 ----------M---------NRISG--ETIFVTAPH-------------------------------------------- 309 (494)
T ss_dssp ----------E---------EECCS--SCEEEEEEE--------------------------------------------
T ss_pred ----------e---------ecccC--CceEEeccc--------------------------------------------
Confidence 0 00000 111111111
Q ss_pred ccccccccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEeeCCchhhHHHHHh-cccHHHHHHHHHhcCCCch
Q 004914 346 GFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLE-HGWHEKALAAVEAGQGRSE 424 (724)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i~~ll~-~~~~~~Al~~~~~~~~~~~ 424 (724)
...+-++.+..+..+.....+.+..|.++.+ .++-+.|+.+|.+...++.
T Consensus 310 -----------------------------~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~lA~~lA~R~~LpGA 360 (494)
T 1bpo_A 310 -----------------------------EATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA 360 (494)
T ss_dssp -----------------------------TTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTTCSSC
T ss_pred -----------------------------CCCCcEEEEccCceEEEEEEccccchhhhhhccCCHHHHHHHHHhcCCccH
Confidence 1122355556666666777777778877664 5778999999988776432
Q ss_pred hHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcC
Q 004914 425 LLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLR 472 (724)
Q Consensus 425 ~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~ 472 (724)
+.+..+..+.||..|+|++||.+...-=++ .+.=-+.|.||-...
T Consensus 361 --d~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 361 --EELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVP 405 (494)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCC
Confidence 356788899999999999999864432111 111135678886643
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.16 E-value=0.00047 Score=72.25 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=51.9
Q ss_pred eEEEEecCCEEEEEe----------CCCeEEEEec-CCCeeEEEcCC-------ccceeEEEEcCCCCEEEEEeC--CCC
Q 004914 57 ASCVAVAERMIALGT----------HAGTVHILDF-LGNQVKEFPAH-------TAAVNDLSFDVDGEYVGSCSD--DGS 116 (724)
Q Consensus 57 i~~~s~~~~~la~g~----------~dg~I~i~d~-~~~~~~~~~~h-------~~~V~~l~~s~~g~~l~s~~~--Dg~ 116 (724)
-..++|+|+++.++. .++.|.+||. +.+.+..+... ...-..+.|+|+|++++.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 447999999888875 3678999999 45555444321 122357899999999988874 578
Q ss_pred EEEEeccCCceE
Q 004914 117 VVINSLFTDEKM 128 (724)
Q Consensus 117 v~iwd~~~~~~~ 128 (724)
|.++| .++++.
T Consensus 150 v~viD-~t~~~~ 160 (373)
T 2mad_H 150 VGLVV-QGGSSD 160 (373)
T ss_pred EEEEE-CCCCEE
Confidence 99999 887654
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.15 E-value=0.00055 Score=68.77 Aligned_cols=179 Identities=9% Similarity=0.053 Sum_probs=116.8
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEc--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC--CC-
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~- 134 (724)
+.+++++.++...++.|..+|..+.. ..+. .....+.+++++++|+.+++...++.|..+|.. +....+.. ..
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKKGGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCeEEEECCCCCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 44567777666668899999988554 3332 234678999999999988888778899999987 65554432 23
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE-eccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~ 210 (724)
.+.+++++++ ++.+++...++.+..++. .+..... .......+.++.+. |.+.++. ..+.|.+|+. ++
T Consensus 147 ~~~~i~~d~~-----g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 218 (300)
T 2qc5_A 147 YPAFITLGSD-----NALWFTENQNNSIGRITN--TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG 218 (300)
T ss_dssp CEEEEEECTT-----SSEEEEETTTTEEEEECT--TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CceeEEECCC-----CCEEEEecCCCeEEEECC--CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence 7899999998 777777766778888765 2332221 12234567888887 6666666 4567999998 45
Q ss_pred ceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 211 QRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
..... ..+. ....+..+++ .++.++++. .++.|..|+.
T Consensus 219 ~~~~~-~~~~----~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 219 EISEY-DIPT----PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEE-ECSS----TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred cEEEE-ECCC----CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 44332 2221 1122445666 455555554 4577887764
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.15 E-value=0.00027 Score=75.11 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=112.1
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceE-EE---e
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKM-KF---D 131 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~-~~---~ 131 (724)
.+++++++++++...++.|++||..+..+..+........ ++|+++|+.++++..++ .|.+|+..++... .+ .
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~ 214 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLG 214 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeecc
Confidence 3566778888787888999999997666544433333334 89999999998888866 7888888765432 22 1
Q ss_pred C-CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-----ccCCCC--eEEEEEeC--CEEEEE--c
Q 004914 132 Y-HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-----HSGEGP--VHVVKWRT--SLIAWA--N 198 (724)
Q Consensus 132 ~-~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-----~~~~~~--V~~l~~~~--~~la~~--~ 198 (724)
. .. .+++++++|+ +..++++..++.|..|+.. +.....+ .+..+. ...++|++ ..+.++ .
T Consensus 215 ~~~~~~p~~iav~p~-----~g~lyv~d~~~~I~~~d~~--~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 215 STFSGKIGAVALDET-----EEWLYFVDSNKNFGRFNVK--TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp TTSCSCCCBCEECTT-----SSEEEEECTTCEEEEEETT--TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred chhcCCcEEEEEeCC-----CCeEEEEECCCcEEEEECC--CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 2 23 7889999995 3455557778888888764 2222232 112222 23899983 444444 4
Q ss_pred CCcEEEEEcCCCceEEEecCCCCCCCC--------CCCCCceee-cCCCeEEEEe--CCeEEEEEE
Q 004914 199 DAGVKVYDAANDQRITFIERPRGSPRP--------ELLLPHLVW-QDDTLLVIGW--GTYIKIASI 253 (724)
Q Consensus 199 d~~i~i~d~~~~~~~~~i~~~~~~~~~--------~~~~~~l~~-~~~~~l~~g~--d~~i~vw~~ 253 (724)
++.|+.|+.... .............. -..+..+++ +++.++++-. +++|+.|++
T Consensus 288 ~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 288 LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 678999987644 22222211000000 112445666 4555444433 456777764
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.12 E-value=0.00043 Score=73.55 Aligned_cols=189 Identities=8% Similarity=0.013 Sum_probs=114.8
Q ss_pred EEEEecCCEEEEEeCCC--eEEEEecCCCe-eEEE---cC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEE
Q 004914 58 SCVAVAERMIALGTHAG--TVHILDFLGNQ-VKEF---PA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg--~I~i~d~~~~~-~~~~---~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (724)
.+++++++.++++..++ .|.+|+..+.. ...+ .. ....+.+++++|++..|..+..++.|+.||..++....+
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 57888888888887765 89999884332 2333 12 456778899999555555577788999999988765443
Q ss_pred ----e-CCC-C--eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCC---------------CCeEEE
Q 004914 131 ----D-YHR-P--MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE---------------GPVHVV 187 (724)
Q Consensus 131 ----~-~~~-~--v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~---------------~~V~~l 187 (724)
. ... . ...++|+|+ ++..+++...++.|..|+.. +. ...+.++. ....++
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~----~g~lyv~d~~~~~I~~~~~~--g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gi 328 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFV----DSNFYMSDQNLSSVYKITPD--GE-CEWFCGSATQKTVQDGLREEALFAQPNGM 328 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETT----TTEEEEEETTTTEEEEECTT--CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEE
T ss_pred ecccccCCCCCCccccEEEeCC----CCEEEEEeCCCCEEEEEecC--CC-EEEEEeCCCCCCcCCCcccccEeCCCeEE
Confidence 1 122 1 239999995 25667777777888887653 32 22222221 336788
Q ss_pred EEe--CCEEEEEc--CCcEEEEEcCCCceEEEecCCCCCCC--------CCCCCCceee-cCCCeEEEE-eCCeEEEEEE
Q 004914 188 KWR--TSLIAWAN--DAGVKVYDAANDQRITFIERPRGSPR--------PELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 188 ~~~--~~~la~~~--d~~i~i~d~~~~~~~~~i~~~~~~~~--------~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (724)
+++ |.+.++-. ++.|+.|+..++........+..... .-..+..+++ +++.++++- .+++|+.+.+
T Consensus 329 a~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 329 TVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 998 66554443 56899999877765444332111000 0122445666 344444444 5566776654
No 218
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.12 E-value=0.00011 Score=76.90 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=106.8
Q ss_pred CCCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEeC----------CCCEEEEeccCCceE-EEeCC------
Q 004914 72 HAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD----------DGSVVINSLFTDEKM-KFDYH------ 133 (724)
Q Consensus 72 ~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~----------Dg~v~iwd~~~~~~~-~~~~~------ 133 (724)
.++.|.+||. +++.+..+..+..+ .++|+|+|+++.+++. ++.|.+||..+.+.. .+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4679999998 66767777777665 8999999999888763 677999999886553 34321
Q ss_pred -CCeeEEEeCCCCCCCCCCEEEEecC--CCeEEEEecccCCccceE-eccCCCCeEEEEEe--C--CEEEEEcCCcEEEE
Q 004914 134 -RPMKAISLDPDYTRKMSRRFVAGGL--AGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--T--SLIAWANDAGVKVY 205 (724)
Q Consensus 134 -~~v~~v~~~p~~~~~~~~~l~~g~~--dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~--~--~~la~~~d~~i~i~ 205 (724)
.....++++|+ +++++++.. ++.|.+|+.. .+..... +... ....+.+. + .+++.+.|+.+.+|
T Consensus 107 g~~p~~i~~spd-----g~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 107 LNYDGLFRQTTD-----GKFIVLQNASPATSIGIVDVA-KGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp CCCGGGEEECTT-----SSEEEEEEESSSEEEEEEETT-TTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred CCCcceEEECCC-----CCEEEEECCCCCCeEEEEECC-CCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEE
Confidence 25778999999 888887753 5789999875 3333333 3321 12223333 2 34555578999999
Q ss_pred EcCC-CceEEEecCCCCCCCCCCCCCceee-cCCCeEE-EEeCCeEEEEEEee
Q 004914 206 DAAN-DQRITFIERPRGSPRPELLLPHLVW-QDDTLLV-IGWGTYIKIASIKT 255 (724)
Q Consensus 206 d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~-~g~d~~i~vw~~~~ 255 (724)
+... ++................ ...+.. .++..++ ++.++.|.++|+..
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred EECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence 8865 554422211000000000 011111 3344444 44778899998854
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.11 E-value=0.00021 Score=72.59 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=112.5
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeC----C
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY----H 133 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~----~ 133 (724)
.|+++++ +++++..++.|..|+.++. ...+..+...+.+++++++|+.+++...++.|.+|+.. +....+.. .
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK 128 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence 5888888 6677888899999998665 45555666788999999999977766667889999986 55443321 1
Q ss_pred --CCeeEEEeCCCCCCCCCCEEEE----ecC-------------CCeEEEEecccCCccceEeccCCCCeEEEEEe--CC
Q 004914 134 --RPMKAISLDPDYTRKMSRRFVA----GGL-------------AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS 192 (724)
Q Consensus 134 --~~v~~v~~~p~~~~~~~~~l~~----g~~-------------dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~ 192 (724)
..++.++++|+ |+.+++ |.. .+.|..++.. ......+. ......+++|+ ++
T Consensus 129 ~~~~~~~i~~d~d-----G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~--~g~~~~~~-~~~~p~gl~~spdg~ 200 (305)
T 3dr2_A 129 RLNSPNDLIVARD-----GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD--GSPLQRMA-DLDHPNGLAFSPDEQ 200 (305)
T ss_dssp ECSCCCCEEECTT-----SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS--SCCCEEEE-EESSEEEEEECTTSS
T ss_pred ccCCCCCEEECCC-----CCEEEeCcCCCccccccccccccccCCCeEEEEcCC--CCcEEEEe-cCCCCcceEEcCCCC
Confidence 15778999999 777776 432 2345554432 22222222 33456788998 56
Q ss_pred EEEEE-cC------CcEEEEEcCCCceEE--EecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEE
Q 004914 193 LIAWA-ND------AGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASI 253 (724)
Q Consensus 193 ~la~~-~d------~~i~i~d~~~~~~~~--~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~ 253 (724)
.+.++ +. +.|.+|++..+.... .+... ....+..+.+ .++. |.++..+.|.+|+.
T Consensus 201 ~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-----~~~~pdgi~~d~~G~-lwv~~~~gv~~~~~ 265 (305)
T 3dr2_A 201 TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-----PDGLPDGFCVDRGGW-LWSSSGTGVCVFDS 265 (305)
T ss_dssp EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-----SSSCCCSEEECTTSC-EEECCSSEEEEECT
T ss_pred EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-----CCCCCCeEEECCCCC-EEEecCCcEEEECC
Confidence 66555 43 679999987654111 11111 1112345666 4555 55553445777764
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.11 E-value=0.00012 Score=74.60 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=111.1
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCC-----ccceeEEEEcCCCCEEEE----EeC-------------CCC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAH-----TAAVNDLSFDVDGEYVGS----CSD-------------DGS 116 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h-----~~~V~~l~~s~~g~~l~s----~~~-------------Dg~ 116 (724)
+++++|+++++...++.|.+|+.++... .+..+ ...++++.++++|+.++| |.. .+.
T Consensus 92 ~~d~dG~l~v~~~~~~~v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~ 170 (305)
T 3dr2_A 92 AVDAQQRLVHCEHGRRAITRSDADGQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS 170 (305)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTSCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred eECCCCCEEEEECCCCEEEEECCCCCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence 4666788666555668899999876542 22211 235778999999998886 332 256
Q ss_pred EEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC------CeEEEEecccCC-ccceEe-ccCCCCeEEE
Q 004914 117 VVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA------GHLYLNSKKWLG-YRDQVL-HSGEGPVHVV 187 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d------g~v~l~~~~~~~-~~~~~l-~~~~~~V~~l 187 (724)
|..+|..+++...+. .. ..+.++|+|+ ++.++++... +.|..|+..-.+ .....+ ....+...++
T Consensus 171 v~~~d~~~g~~~~~~-~~~~p~gl~~spd-----g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi 244 (305)
T 3dr2_A 171 VYRLPPDGSPLQRMA-DLDHPNGLAFSPD-----EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF 244 (305)
T ss_dssp EEEECSSSCCCEEEE-EESSEEEEEECTT-----SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSE
T ss_pred EEEEcCCCCcEEEEe-cCCCCcceEEcCC-----CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeE
Confidence 777887777665544 33 6789999999 7766666554 678887654111 111111 1123445567
Q ss_pred EEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEE
Q 004914 188 KWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 188 ~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~ 252 (724)
.+. |++.+++ .++|.+|+. .++.+..+..+. .+..++| .+++.|.++..+.+..++
T Consensus 245 ~~d~~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~~-------~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 245 CVDRGGWLWSSS-GTGVCVFDS-DGQLLGHIPTPG-------TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp EECTTSCEEECC-SSEEEEECT-TSCEEEEEECSS-------CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred EECCCCCEEEec-CCcEEEECC-CCCEEEEEECCC-------ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 777 6754444 456999998 566776665543 1445677 566777777556554443
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.09 E-value=0.0002 Score=72.51 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=105.6
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-----CccceeEEEEcCCCCEEEEEeCC---------CCEEEEeccC
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-----HTAAVNDLSFDVDGEYVGSCSDD---------GSVVINSLFT 124 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-----h~~~V~~l~~s~~g~~l~s~~~D---------g~v~iwd~~~ 124 (724)
+++++|+++ +++ ++.|.+||..+.....+.. ....+++++++|+|+++++...+ +.-.+|.+..
T Consensus 60 ~~~~dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 60 ALRQSGGYV-ATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEBTTSSEE-EEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred EECCCCCEE-EEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 456678854 444 5679999986554433322 12458899999999977765332 3345555543
Q ss_pred -CceEEEeCC-CCeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecc-cCCcc--ceEe---ccCCCCeEEEEEe--CCE
Q 004914 125 -DEKMKFDYH-RPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKK-WLGYR--DQVL---HSGEGPVHVVKWR--TSL 193 (724)
Q Consensus 125 -~~~~~~~~~-~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~-~~~~~--~~~l---~~~~~~V~~l~~~--~~~ 193 (724)
+....+... ...+.++|+|+ ++.+ ++.+.++.|..|+.. -.+.. ...+ ....+...++++. |++
T Consensus 138 ~g~~~~~~~~~~~pngi~~spd-----g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 138 DHHVKKYFDQVDISNGLDWSLD-----HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp TSCEEEEEEEESBEEEEEECTT-----SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CCCEEEEeeccccccceEEcCC-----CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 344333222 26789999999 6654 566677889888753 12321 1122 2233567788887 676
Q ss_pred EEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEE
Q 004914 194 IAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG 243 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g 243 (724)
.++. ..+.|..||..+++.+..+..+.. .+.+++| ++++.|.++
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~~p~~------~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVKLPVD------KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEECSSS------BEEEEEEESGGGCEEEEE
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEECCCC------CceEEEEeCCCCCEEEEE
Confidence 6665 567799999998998888765531 2456666 344444433
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.01 E-value=0.00037 Score=72.49 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=116.2
Q ss_pred EecCCEEEEEeC-----CCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEe----------CCCCEEEEeccC
Q 004914 61 AVAERMIALGTH-----AGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS----------DDGSVVINSLFT 124 (724)
Q Consensus 61 s~~~~~la~g~~-----dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~----------~Dg~v~iwd~~~ 124 (724)
.|+++.+.+... ++.|.++|. +++.+..+.....+ .+.++|+|+++..++ .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 467777766654 689999999 45556667654445 399999999876665 367899999999
Q ss_pred CceE-EEeCC--------CCeeEEEeCCCCCCCCCCEEEEecC--CCeEEEEecccCCccceEeccCCCCeEEEEEe-C-
Q 004914 125 DEKM-KFDYH--------RPMKAISLDPDYTRKMSRRFVAGGL--AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-T- 191 (724)
Q Consensus 125 ~~~~-~~~~~--------~~v~~v~~~p~~~~~~~~~l~~g~~--dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~- 191 (724)
.++. .+... .....++|+|+ |++++++.. ++.|.+++.. .++....+... + +..+.-. .
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spD-----Gk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~-g-~~~~~P~g~~ 190 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPD-----GKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVP-D-CYHIFPTAPD 190 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTT-----SSEEEEEECSSSCEEEEEETT-TTEEEEEEECC-S-EEEEEEEETT
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCC-----CCEEEEEEcCCCCeEEEEECC-CCcEEEEEECC-C-cceeecCCCc
Confidence 7754 33221 15678999999 787777653 6789998875 34444444322 1 1122111 2
Q ss_pred CEEEEEcCCcEEEEEcCC-CceEEEecCCCCCCCCCCCCCceee--cCCCeEEEEeCCeEEEEEEeeC
Q 004914 192 SLIAWANDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 192 ~~la~~~d~~i~i~d~~~-~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
.+++.+.||.+.+.++.+ ++......... .+..........| .+++.+.++.++.|++.|+.+.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~-~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVF-HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCC-SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeeccee-ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 455666899999999876 55533221110 1111111112345 4666667778889999988654
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.92 E-value=0.0013 Score=67.53 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=100.3
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEcCC-----ccceeEEEEcCCCCEEEEEeC------CCCEEEEeccCCceE
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAH-----TAAVNDLSFDVDGEYVGSCSD------DGSVVINSLFTDEKM 128 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h-----~~~V~~l~~s~~g~~l~s~~~------Dg~v~iwd~~~~~~~ 128 (724)
++++|+++++ +.+| |.+||..+..+..+... ...++++.++|+|+++++... .+.|..++ ++...
T Consensus 97 ~~~dg~l~v~-~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~ 172 (326)
T 2ghs_A 97 KISDSKQLIA-SDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT 172 (326)
T ss_dssp EEETTEEEEE-ETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE
T ss_pred EeCCCeEEEE-ECCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE
Confidence 5677876654 4444 99999854444333221 246889999999997776542 23455555 55554
Q ss_pred EEeCCC-CeeEEEeCCCCCCCCCCEE-EEecCCCeEEEEecc-cCC-cc--ceEe---ccCCCCeEEEEEe--CCEEEEE
Q 004914 129 KFDYHR-PMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKK-WLG-YR--DQVL---HSGEGPVHVVKWR--TSLIAWA 197 (724)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~-~~~-~~--~~~l---~~~~~~V~~l~~~--~~~la~~ 197 (724)
.+.... ...+++|+|+ ++.+ ++.+.++.|.+|+.. -.+ .. ...+ ....+...++.+. |.+.++.
T Consensus 173 ~~~~~~~~~~~i~~s~d-----g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 173 KLFADISIPNSICFSPD-----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp EEEEEESSEEEEEECTT-----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred EeeCCCcccCCeEEcCC-----CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 443222 6789999999 6655 455667889888753 122 11 1122 2234556778887 6666555
Q ss_pred -cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec--CCCeEEEE
Q 004914 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG 243 (724)
Q Consensus 198 -~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g 243 (724)
.++.|..|+. +++.+..+..+. ..+.+++|. ++..|.++
T Consensus 248 ~~~~~v~~~d~-~g~~~~~i~~~~------~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 248 WGEGAVDRYDT-DGNHIARYEVPG------KQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp ETTTEEEEECT-TCCEEEEEECSC------SBEEEEEEESTTSCEEEEE
T ss_pred eCCCEEEEECC-CCCEEEEEECCC------CCcEEEEEecCCCCEEEEE
Confidence 5678999998 566666655442 124556663 33444433
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.80 E-value=0.0027 Score=66.36 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=108.3
Q ss_pred ecCCEEEEEeC--CC---eEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEe----------CCCCEEEEeccCC
Q 004914 62 VAERMIALGTH--AG---TVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS----------DDGSVVINSLFTD 125 (724)
Q Consensus 62 ~~~~~la~g~~--dg---~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~----------~Dg~v~iwd~~~~ 125 (724)
++++++.+... .+ +|.++|. +++.+..+.....+ .+.++|||+++..+. .++.|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 56665555443 22 8899999 56666666654444 899999999988875 3678999999875
Q ss_pred ceE-EEeCC--------CCeeEEEeCCCCCCCCCCEEEEecC--CCeEEEEecccCCccceE-eccCCCCeEEEEEeC-C
Q 004914 126 EKM-KFDYH--------RPMKAISLDPDYTRKMSRRFVAGGL--AGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWRT-S 192 (724)
Q Consensus 126 ~~~-~~~~~--------~~v~~v~~~p~~~~~~~~~l~~g~~--dg~v~l~~~~~~~~~~~~-l~~~~~~V~~l~~~~-~ 192 (724)
+.. .+... .....++|+|+ +++++++.. ++.|.+++ . .+..... +... +.+.-..+.+ .
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spD-----G~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~-~~~~~~~~~~~~ 179 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPN-----NADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP-TCYHIHPGAPST 179 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCC-----CCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC-ceEEEEeCCCce
Confidence 543 33222 23568999999 888887764 46788887 4 4444444 3322 2222112222 3
Q ss_pred EEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee--cCCCeEEEEeCCeEEEEEEee
Q 004914 193 LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 193 ~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~~~~ 255 (724)
+++.+.|+.+.+++. +++......................+ .++..++++..+.+.++|+..
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 444447899999999 88776433211000000000011112 234455555677888888864
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.75 E-value=0.0052 Score=60.72 Aligned_cols=184 Identities=9% Similarity=0.082 Sum_probs=109.8
Q ss_pred EEEecCCE-EEEEeCCCeEEEEecCCCeeEEEc-CCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceEEE-eCC-
Q 004914 59 CVAVAERM-IALGTHAGTVHILDFLGNQVKEFP-AHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKMKF-DYH- 133 (724)
Q Consensus 59 ~~s~~~~~-la~g~~dg~I~i~d~~~~~~~~~~-~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~~~-~~~- 133 (724)
+++++++. .++...++.|..++.++.....+. .......++++++++..+ ++-...+.|.++++.+.....+ ...
T Consensus 42 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 121 (267)
T 1npe_A 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC
Confidence 46665554 445556789999999776543332 223467899999976554 4555678899999876543333 222
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecC--CCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEEEEE
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGL--AGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVKVYD 206 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~--dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~i~d 206 (724)
.....++++|+ ++..+++... .+.|..++. ++.....+. ..-....+++++ +..+.++ ..+.|.+++
T Consensus 122 ~~P~~i~vd~~----~g~lyv~~~~~~~~~I~~~~~--dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 122 VNPRGIVTDPV----RGNLYWTDWNRDNPKIETSHM--DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp SSEEEEEEETT----TTEEEEEECCSSSCEEEEEET--TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCccEEEEeeC----CCEEEEEECCCCCcEEEEEec--CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 36789999996 1344444433 356766554 344433332 233456789998 4566665 467899999
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
..++.....+... ..+..++..++.++++. .++.|.+++..+
T Consensus 196 ~~g~~~~~~~~~~-------~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 196 PAQPGRRKVLEGL-------QYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp TTEEEEEEEEECC-------CSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCceEEEecCC-------CCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 8765444333211 11234444444444444 457787777654
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.71 E-value=0.0046 Score=60.71 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=112.0
Q ss_pred EEEecCCEEEEEeC--CCeEEEEec-CCCeeEEEcCCc-cceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE-EEeC
Q 004914 59 CVAVAERMIALGTH--AGTVHILDF-LGNQVKEFPAHT-AAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDY 132 (724)
Q Consensus 59 ~~s~~~~~la~g~~--dg~I~i~d~-~~~~~~~~~~h~-~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (724)
.+++++.+.++.+. ++.|+++|. +++.+..+.-.. .....++++ |+.+ ++.-.++.+.++|..+.++. ++..
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~ 104 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH 104 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC
Confidence 45666544433332 589999999 666666654221 122345554 5444 45556889999999986654 4544
Q ss_pred C-CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CCC---CeEEEEEe-CCEEEEE-cCCcEEE
Q 004914 133 H-RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEG---PVHVVKWR-TSLIAWA-NDAGVKV 204 (724)
Q Consensus 133 ~-~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~~---~V~~l~~~-~~~la~~-~d~~i~i 204 (724)
. ..-.. ++++ ++.++++..++.+.+.+.. .......+.- ... ....+.|. |.+.+.. .++.|.+
T Consensus 105 g~~~g~g--lt~D-----g~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 105 QMKDGWG--LATD-----GKILYGSDGTSILYEIDPH-TFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIAR 176 (266)
T ss_dssp CSSSCCE--EEEC-----SSSEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEE
T ss_pred CCCCeEE--EEEC-----CCEEEEECCCCeEEEEECC-CCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEE
Confidence 3 32233 4445 3444445567888887764 2232333332 111 35677777 5444444 4789999
Q ss_pred EEcCCCceEEEecCCCC-------CCCCCCCCCceee-cCCC-eEEEE-eCCeEEEEEEeeCC
Q 004914 205 YDAANDQRITFIERPRG-------SPRPELLLPHLVW-QDDT-LLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~-------~~~~~~~~~~l~~-~~~~-~l~~g-~d~~i~vw~~~~~~ 257 (724)
.|..+++.+..+..+.. ..........++| ++++ .+++| ..+.+.+.++....
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999999998876410 0111123457888 4554 55556 67889999998764
No 227
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.70 E-value=0.0051 Score=63.89 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=91.0
Q ss_pred EEEEecCCEEEEEe----------CCCeEEEEec-CCCeeEEEcCC-------ccceeEEEEcCCCCEEEEEeC--CCCE
Q 004914 58 SCVAVAERMIALGT----------HAGTVHILDF-LGNQVKEFPAH-------TAAVNDLSFDVDGEYVGSCSD--DGSV 117 (724)
Q Consensus 58 ~~~s~~~~~la~g~----------~dg~I~i~d~-~~~~~~~~~~h-------~~~V~~l~~s~~g~~l~s~~~--Dg~v 117 (724)
..++|+|+.+.+++ .++.|.+||. +++.+..+.-. ...-..+.|+|||+++..+.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 57899999776665 3678999999 55555555321 113456899999998887764 6899
Q ss_pred EEEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccce----EeccCCCCeE-EEEEe-
Q 004914 118 VINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ----VLHSGEGPVH-VVKWR- 190 (724)
Q Consensus 118 ~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~----~l~~~~~~V~-~l~~~- 190 (724)
.++|+.++++. ++.... |..+.|. +.+.+++.+.||.+.+.+..-.+.... .+.....++. ...|.
T Consensus 163 sVID~~t~~vv~tI~v~g---~~~~~P~----g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD---CYHIFPT----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp EEEETTTTEEEEEEECCS---EEEEEEE----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred EEEECCCCcEEEEEECCC---cceeecC----CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence 99999998764 343322 1122243 245666777778777665542222211 1111223332 24564
Q ss_pred --CCEEEEEcCCcEEEEEcCCCc
Q 004914 191 --TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 191 --~~~la~~~d~~i~i~d~~~~~ 211 (724)
|+++..+.++.+.+.|..++.
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGD 258 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSS
T ss_pred CCCcEEEEeCCCEEEEEECCCCc
Confidence 555566667889999997654
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.69 E-value=0.001 Score=68.01 Aligned_cols=173 Identities=13% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-eEEEeCCC-CeeEEEe
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAISL 141 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v~~ 141 (724)
+..+.+|+.++.|..+|..|.....+......+.++.++++|..++++ +.+..+| .++. ........ .+.++..
T Consensus 147 ~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~ 222 (330)
T 3hxj_A 147 DGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAI 222 (330)
T ss_dssp TSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEE
T ss_pred CCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEE
Confidence 334667888888999998866666665556677778888888855444 8899999 5544 34444444 6788888
Q ss_pred CCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCC
Q 004914 142 DPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 142 ~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~ 219 (724)
+++ + .+.+++.+|.+..++. .+.....+......+.++... +.+.+++.++.+..+|. +++.+.....+
T Consensus 223 ~~~-----g-~l~v~t~~~gl~~~~~--~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~ 293 (330)
T 3hxj_A 223 SED-----G-TIYVTSLDGHLYAINP--DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETG 293 (330)
T ss_dssp CTT-----S-CEEEEETTTEEEEECT--TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECS
T ss_pred CCC-----C-eEEEEcCCCeEEEECC--CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcC
Confidence 877 4 5556666677777653 344443333333333444555 55555556779999996 66666655433
Q ss_pred CCCCCCCCCCCceee-cCCCeEEEEeCCeEEEEEEee
Q 004914 220 RGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 220 ~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw~~~~ 255 (724)
. ..+.++.. .++.+.+.+.+|.+++.....
T Consensus 294 ~------~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 294 S------WIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp S------CCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred C------ccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 2 12334444 455555544888888765543
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.68 E-value=0.0006 Score=72.19 Aligned_cols=187 Identities=13% Similarity=-0.020 Sum_probs=109.3
Q ss_pred eEEEEecCCEEEEEe----------CCCeEEEEec-CCCeeEEEcCC-------ccceeEEEEcCCCCEEEEEeC--CCC
Q 004914 57 ASCVAVAERMIALGT----------HAGTVHILDF-LGNQVKEFPAH-------TAAVNDLSFDVDGEYVGSCSD--DGS 116 (724)
Q Consensus 57 i~~~s~~~~~la~g~----------~dg~I~i~d~-~~~~~~~~~~h-------~~~V~~l~~s~~g~~l~s~~~--Dg~ 116 (724)
-..++|+|+.+.++. .++.|.++|. +++.+..+.-. ...-..+.|+|+|+++..+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 346889999777765 4678999999 55555555321 123456899999999888764 578
Q ss_pred EEEEeccCCceE-EEeCCCC--------eeEEEeCCCCCCCCCCEEEEecCCCeEE------------------------
Q 004914 117 VVINSLFTDEKM-KFDYHRP--------MKAISLDPDYTRKMSRRFVAGGLAGHLY------------------------ 163 (724)
Q Consensus 117 v~iwd~~~~~~~-~~~~~~~--------v~~v~~~p~~~~~~~~~l~~g~~dg~v~------------------------ 163 (724)
|.+.|+.++++. ++..... -..++++++ ++.+++...++++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~d-----G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRD-----GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT-----SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCC-----CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 999999987654 3332210 111344444 34333333333222
Q ss_pred -------------EEecccCCccceEecc-------------CCCCeEEEEEe--CCEEEEE-c----------CCcEEE
Q 004914 164 -------------LNSKKWLGYRDQVLHS-------------GEGPVHVVKWR--TSLIAWA-N----------DAGVKV 204 (724)
Q Consensus 164 -------------l~~~~~~~~~~~~l~~-------------~~~~V~~l~~~--~~~la~~-~----------d~~i~i 204 (724)
+.+.. +.....+.. .......++++ +..+.++ . ++.|.+
T Consensus 277 ~~~~~~s~~g~V~ViD~~--~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLT--AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp CEEEEEBTTSEEEEEEEC--SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCcEEEEecc--CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence 21110 000000000 00111124566 3444333 2 246999
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceee-cCCC-eEEEE--eCCeEEEEEEeeCC
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVW-QDDT-LLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~-~l~~g--~d~~i~vw~~~~~~ 257 (724)
+|..+.+.+..++.+. .+..+.| .+++ .++++ .++.|.|+|..+.+
T Consensus 355 ID~~T~kvv~~I~vg~-------~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 355 LNAETGERINKIELGH-------EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EETTTCCEEEEEEEEE-------EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCeEEEEEECCC-------CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999876543 2456777 5677 77777 37999999987755
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.67 E-value=0.0026 Score=72.68 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=107.1
Q ss_pred EEEEecCCEEEEEeCCC-------------eEEEEecCCCe---eEEE--cC-CccceeEEEEcCCCCEEEEEeC----C
Q 004914 58 SCVAVAERMIALGTHAG-------------TVHILDFLGNQ---VKEF--PA-HTAAVNDLSFDVDGEYVGSCSD----D 114 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg-------------~I~i~d~~~~~---~~~~--~~-h~~~V~~l~~s~~g~~l~s~~~----D 114 (724)
.+|+ ||+.|+.++.++ .|++|++.... ...+ .. |...+.++.|+|+|++|+.... +
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 4699 999999988774 38999984322 2223 23 4445788999999998754432 2
Q ss_pred CCEEEEeccCC--ceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC---CeEEEEecccCCcc--ceEeccCCCCeEE
Q 004914 115 GSVVINSLFTD--EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA---GHLYLNSKKWLGYR--DQVLHSGEGPVHV 186 (724)
Q Consensus 115 g~v~iwd~~~~--~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d---g~v~l~~~~~~~~~--~~~l~~~~~~V~~ 186 (724)
..|.++|+.++ ....+..+. ..... |+++ ++..++++..+ +.|..++.. .+.. .+.+..+...+.+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~----g~~l~~~t~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~~ 332 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNK----GSTLYLLTNRDAPNRRLVTVDAA-NPGPAHWRDLIPERQQVLT 332 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEE----TTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEECCCSSCEE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-Eecc----CCEEEEEECCCCCCCEEEEEeCC-CCCccccEEEecCCCCEEE
Confidence 47899999875 455665555 44444 5555 23444454443 457666654 2222 2344444433335
Q ss_pred EEEeCCEEEEE-c-CC--cEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eC----CeEEEEEEeeC
Q 004914 187 VKWRTSLIAWA-N-DA--GVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WG----TYIKIASIKTN 256 (724)
Q Consensus 187 l~~~~~~la~~-~-d~--~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d----~~i~vw~~~~~ 256 (724)
++..++.++.+ . ++ .|++|++.++ ....+..+.. ..+..+.+ .++..++.. .+ +.++.||+.++
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~-----~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGL-----GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSS-----SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCC-----ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 55557666554 3 44 5888888754 3444443321 12333444 355555544 44 67888876544
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.67 E-value=0.0019 Score=65.87 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=110.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-EEEeCCC-CeeEEEe
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKAISL 141 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v~~ 141 (724)
+..+.+|+.+|.+..+|..|........+...+.++..+++|. +..++.++.+..+|.. +.. ..+.... .+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 6677889999999999998766656655666677778888887 5557778999999998 554 4454444 6777777
Q ss_pred CCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCC
Q 004914 142 DPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERP 219 (724)
Q Consensus 142 ~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~ 219 (724)
+++ +. +.+|+ +.+..++. .+............+.++... |.+.+++.++.+..++. ++..+..+...
T Consensus 185 d~~-----g~-l~v~t--~~l~~~d~--~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 185 GKD-----GT-IYFGS--DKVYAINP--DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp CTT-----CC-EEEES--SSEEEECT--TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS
T ss_pred cCC-----CE-EEEEe--CEEEEECC--CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC
Confidence 776 44 45555 66777662 344443444444557777776 46666667788999974 55555554433
Q ss_pred CCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEE
Q 004914 220 RGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~ 252 (724)
... ...+....+..+.+| .++.|..+|
T Consensus 254 ~~~------~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 254 KRI------ESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp SCC------CSCCEECTTSCEEEECTTCEEEEEC
T ss_pred CCc------cccceEcCCCeEEEecCCCCEEEEC
Confidence 211 222334334445555 666888776
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.61 E-value=0.0026 Score=65.65 Aligned_cols=150 Identities=13% Similarity=0.020 Sum_probs=92.4
Q ss_pred EEEecCCEEEEEeC-----CCeEEEEecC-CCeeEEEcC------CccceeEEEEcCCCCE-EEEEe---CCCCEEEEec
Q 004914 59 CVAVAERMIALGTH-----AGTVHILDFL-GNQVKEFPA------HTAAVNDLSFDVDGEY-VGSCS---DDGSVVINSL 122 (724)
Q Consensus 59 ~~s~~~~~la~g~~-----dg~I~i~d~~-~~~~~~~~~------h~~~V~~l~~s~~g~~-l~s~~---~Dg~v~iwd~ 122 (724)
++++++++.++.+. ++.|.+||+. ++.+..+.. +...+.++++++++.. +++.+ .++.|.+||+
T Consensus 73 ~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 73 KSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp EECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred EEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 35556666665543 5789999995 554555543 2235689999986544 45555 6789999999
Q ss_pred cCCceEEEe-CC------------------------------CCeeEEEeCCCCCCCCCCEEEEecCCC-eEEEEeccc-
Q 004914 123 FTDEKMKFD-YH------------------------------RPMKAISLDPDYTRKMSRRFVAGGLAG-HLYLNSKKW- 169 (724)
Q Consensus 123 ~~~~~~~~~-~~------------------------------~~v~~v~~~p~~~~~~~~~l~~g~~dg-~v~l~~~~~- 169 (724)
.+++...+. .| ..+..++|+|+ ++.++++..++ .+..++...
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-----g~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-----NEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT-----SCEEEEEESSCSEEEEEEHHHH
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccC-----CCEEEEEeCCCCeEEEEEHHHh
Confidence 876654422 10 13578999999 77777776665 444443221
Q ss_pred -CCc--c---c--eEeccCCCCeEEEEEe--CCEEEEE-cCCcEEEEEcCCCceE
Q 004914 170 -LGY--R---D--QVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRI 213 (724)
Q Consensus 170 -~~~--~---~--~~l~~~~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~~~~~ 213 (724)
.+. . . ....++.+...+++++ |.+.++. .++.|.+||..+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 110 0 0 0111233455678887 6766666 5788999998556543
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.53 E-value=0.0096 Score=58.44 Aligned_cols=155 Identities=10% Similarity=-0.040 Sum_probs=101.7
Q ss_pred ceeEEEEcCCCCEEEEEeC--CCCEEEEeccCCceEE-EeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 95 AVNDLSFDVDGEYVGSCSD--DGSVVINSLFTDEKMK-FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~--Dg~v~iwd~~~~~~~~-~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
....+.|+++|...++.+. ++.|.+.|+.++++.. +.... ....++++.+ ..+++.-.++.+.+++..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~------~lyv~t~~~~~v~viD~~- 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE------KLYQVVWLKNIGFIYDRR- 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT------EEEEEETTCSEEEEEETT-
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC------EEEEEEecCCEEEEEECC-
Confidence 3578999998866666654 5799999999988754 33323 3445666544 666777778899998875
Q ss_pred CCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCe
Q 004914 170 LGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY 247 (724)
Q Consensus 170 ~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~ 247 (724)
.......+....+.-.++++.|..+..+ .++.+.++|..+.+.+..+.-... ..+...+..+.|.++..++.. .++.
T Consensus 95 t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 95 TLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp TTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEETTEEEEEETTSSE
T ss_pred CCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEECCEEEEecCCCCe
Confidence 4444444543212235577777655556 577899999999988887764421 111112345667666555555 5788
Q ss_pred EEEEEEeeCC
Q 004914 248 IKIASIKTNQ 257 (724)
Q Consensus 248 i~vw~~~~~~ 257 (724)
|.+.|..++.
T Consensus 174 V~vID~~tg~ 183 (266)
T 2iwa_A 174 IARISAKDGT 183 (266)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999887654
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.52 E-value=0.0052 Score=63.41 Aligned_cols=105 Identities=8% Similarity=-0.007 Sum_probs=67.7
Q ss_pred EEEecCCEEEEEeC--CCeEEEEec-CCCeeEEE-------cCCccceeEEEEcCCCCEEEEEeC-----CCCEEEEecc
Q 004914 59 CVAVAERMIALGTH--AGTVHILDF-LGNQVKEF-------PAHTAAVNDLSFDVDGEYVGSCSD-----DGSVVINSLF 123 (724)
Q Consensus 59 ~~s~~~~~la~g~~--dg~I~i~d~-~~~~~~~~-------~~h~~~V~~l~~s~~g~~l~s~~~-----Dg~v~iwd~~ 123 (724)
+++++|+.+++... +|.+++|.+ ++. +..+ ..|...+.+++++++|+.+++-.. ++.|.+||+.
T Consensus 23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 23 TLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp EECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred EECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 46678888877542 342344443 443 3322 124568999999999986665543 5789999999
Q ss_pred CCce-EEEeCC------C-CeeEEEeCCCCCCCCCCEEEEec---CCCeEEEEecc
Q 004914 124 TDEK-MKFDYH------R-PMKAISLDPDYTRKMSRRFVAGG---LAGHLYLNSKK 168 (724)
Q Consensus 124 ~~~~-~~~~~~------~-~v~~v~~~p~~~~~~~~~l~~g~---~dg~v~l~~~~ 168 (724)
++++ ..+... . .+..++++|+ ++..+++.. .++.|.+|+..
T Consensus 102 tg~~~~~~~~~~~~~~~~~~~~~v~vd~~----~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 102 NNQLSRVIYLPPPITLSNSFVNDLAVDLI----HNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp TTEEEEEEECCTTTSCTTCCCCEEEEETT----TTEEEEEECCSGGGCEEEEEETT
T ss_pred CCeEEEEEECChhhcccccccceEEEecC----CCEEEEEcCccCCCCeEEEEECC
Confidence 8774 344332 1 4689999986 244555555 56788888753
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.48 E-value=0.016 Score=60.28 Aligned_cols=176 Identities=10% Similarity=0.007 Sum_probs=103.3
Q ss_pred CCEEEEEeCCCeEEEEec-CCCeeEEEcCCcc-------ceeEEEEcC--CCCEEEEEeCCCCEEEEeccCCceEEEeCC
Q 004914 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTA-------AVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~-------~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (724)
+..+.+|+.+|.+..+|. +|+.+........ .+..+...| .+..+..++.+|.+..+|..+++..-....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 556778888999999998 6776554432210 000011111 256677888899999999998776522222
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-CCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCc
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQ 211 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~ 211 (724)
....++... +..+++++.+|.+..++.. ++........ ....+.+....+..+..+ .++.+..+|..+++
T Consensus 268 ~~~~~~~~~-------~~~l~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 GSVNDFIVD-------GNRIYLVDQNDRVMALTID-GGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEEEE-------TTEEEEEETTCCEEEEETT-TCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCceEE-------CCEEEEEcCCCeEEEEECC-CCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCc
Confidence 234444443 3567777788888888764 4443333321 122233334455555555 68889999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEE
Q 004914 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIAS 252 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~ 252 (724)
.+......... ........++.+++.+.+|.|+.|+
T Consensus 340 ~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 340 FVAQQKVDSSG-----FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEECCTTC-----BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEEEecCCCc-----ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 88776543211 1111222344444444888888876
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.48 E-value=0.011 Score=62.59 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=108.4
Q ss_pred cCCEEEEEeC-C----CeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEEEe----------CCCCEEEEeccCCc
Q 004914 63 AERMIALGTH-A----GTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS----------DDGSVVINSLFTDE 126 (724)
Q Consensus 63 ~~~~la~g~~-d----g~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~----------~Dg~v~iwd~~~~~ 126 (724)
+++.+.+... + +.|.++|. +++.+..+..-..+ .+.++|+|+++..+. .++.|.++|..+.+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 5554444433 2 79999999 55556666654455 799999999877665 46789999999976
Q ss_pred eE-EEeCC--------CCeeEEEeCCCCCCCCCCEEEEecC--CCeEEEEecccCCccceEeccCCCCeEEEEEe--CCE
Q 004914 127 KM-KFDYH--------RPMKAISLDPDYTRKMSRRFVAGGL--AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSL 193 (724)
Q Consensus 127 ~~-~~~~~--------~~v~~v~~~p~~~~~~~~~l~~g~~--dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~ 193 (724)
+. .+... .....++|+|+ +++++++.. ++.|.+.+.. .++....+.... ...+.-. ..+
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spD-----Gk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v~g--~~~~~p~g~~~~ 232 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPD-----NKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDVPD--CYHIFPASPTVF 232 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTT-----SSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS--EEEEEEEETTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCC-----CCEEEEEecCCCCeEEEEECC-CCeEEEEEEcCC--ceeeccCCCcEE
Confidence 64 34322 24568899999 788877753 5778887764 333333343221 1122222 234
Q ss_pred EEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCe-EEEEeCCeEEEEEEeeC
Q 004914 194 IAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTL-LVIGWGTYIKIASIKTN 256 (724)
Q Consensus 194 la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~-l~~g~d~~i~vw~~~~~ 256 (724)
++.+.|+.+.+.+..+++...... ..-............+ .++.. +++...+.+.+.|...+
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EEEcCCCCEEEEECCCCcEEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 555678888888886666553221 1000000001112223 34444 44447788999988643
No 237
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.46 E-value=0.014 Score=59.48 Aligned_cols=188 Identities=11% Similarity=0.008 Sum_probs=109.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeEEEcC-----CccceeEEEEcC-CCCEEEEEeC-----------------CCC
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPA-----HTAAVNDLSFDV-DGEYVGSCSD-----------------DGS 116 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~-----h~~~V~~l~~s~-~g~~l~s~~~-----------------Dg~ 116 (724)
+.+++..|.+++..+.|..+|..+..+..+.. .....+++++++ +|+..++-.. +|.
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 44423455566555568888886544433321 113468899999 9987776532 367
Q ss_pred EEEEeccCCceEEEeCC-CCeeEEEeCCCCCCCCCCEEE-EecCCCeEEEEecccCC-ccceEeccCCCCeEEEEEe--C
Q 004914 117 VVINSLFTDEKMKFDYH-RPMKAISLDPDYTRKMSRRFV-AGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWR--T 191 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~~-~~v~~v~~~p~~~~~~~~~l~-~g~~dg~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~~--~ 191 (724)
|..||..++....+... .....++++|+ ++.+. +-+..+.|..++..-.. .....+....+ ..++++. |
T Consensus 167 v~~~d~~~~~~~~~~~~~~~p~gia~~~d-----g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G 240 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKELHVPGGAEVSAD-----SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG 240 (322)
T ss_dssp EEEEETTTTEEEEEEEEESCCCEEEECTT-----SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS
T ss_pred EEEEeCCCCEEEEeccCCccCcceEECCC-----CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC
Confidence 88888877765443222 25678999999 66554 44566788877653100 11222222234 6778887 6
Q ss_pred CEEEEE-c----------CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 192 SLIAWA-N----------DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 192 ~~la~~-~----------d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+.++. . .+.|..+|. .++.+..+..+.+.. ...+..+.+.++.+++++ .++.|.++++...
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~--~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA--GEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT--TSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred CEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc--cccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 665554 3 245778876 467777666554321 122444555555555554 6788988887643
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.45 E-value=0.01 Score=57.62 Aligned_cols=175 Identities=10% Similarity=0.145 Sum_probs=101.9
Q ss_pred cCCEEEEEeCCC--eEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEEEE-EeCCCCEEEEeccCCceE-EEeCCCCee
Q 004914 63 AERMIALGTHAG--TVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGSVVINSLFTDEKM-KFDYHRPMK 137 (724)
Q Consensus 63 ~~~~la~g~~dg--~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~v~iwd~~~~~~~-~~~~~~~v~ 137 (724)
++.+..+++.+| .|+++|+ +|+.+..+.... ......+.++++.|.. ...++.+.++|..+.+.. ++.....-+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce
Confidence 454455555555 8999999 666666654432 2333223334555544 445889999999986654 455433223
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CC---CCeEEEEEe-CCEEEEE-cCCcEEEEEcCCC
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GE---GPVHVVKWR-TSLIAWA-NDAGVKVYDAAND 210 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~---~~V~~l~~~-~~~la~~-~d~~i~i~d~~~~ 210 (724)
.++ ++ +..++.+..++.+.+++.. .......+.. .. ..+..+.|. |.+.+.. .++.|.+.|..++
T Consensus 131 glt--~d-----g~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 131 GLT--HN-----DQYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp CEE--EC-----SSCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTC
T ss_pred EEe--cC-----CCEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCC
Confidence 444 34 3455555556788887764 2232322222 22 234457777 6655555 5789999999999
Q ss_pred ceEEEecCCCCCC------CCCCCCCceee-cC-CCeEEEE--eCC
Q 004914 211 QRITFIERPRGSP------RPELLLPHLVW-QD-DTLLVIG--WGT 246 (724)
Q Consensus 211 ~~~~~i~~~~~~~------~~~~~~~~l~~-~~-~~~l~~g--~d~ 246 (724)
+.+..+......+ ........++| ++ +.++++| |..
T Consensus 203 ~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 203 KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 9999888753211 11234566888 33 4555666 543
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.43 E-value=0.0051 Score=64.24 Aligned_cols=187 Identities=11% Similarity=0.049 Sum_probs=107.2
Q ss_pred ecCCEEEEEeCCCeEEEEec-CCCeeEEEcCC---------ccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EE
Q 004914 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPAH---------TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h---------~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (724)
..+..+.+++.+|.|..+|. +|+.+..+... ...+.+ ....++..+..++.+|.|..+|..+++.. ..
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 35777888899999999999 67776555432 122322 12224667888889999999999987754 44
Q ss_pred eCCCCe-eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCC-----eEEEEEeCCEEEEE-cCCcEE
Q 004914 131 DYHRPM-KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP-----VHVVKWRTSLIAWA-NDAGVK 203 (724)
Q Consensus 131 ~~~~~v-~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~-----V~~l~~~~~~la~~-~d~~i~ 203 (724)
.....+ ...... +..+++++.+|.+..++.. ++............ .......+..+..+ .++.+.
T Consensus 130 ~~~~~~~~~p~~~-------~~~v~v~~~~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 130 KVAGEALSRPVVS-------DGLVLIHTSNGQLQALNEA-DGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVS 201 (376)
T ss_dssp ECSSCCCSCCEEE-------TTEEEEECTTSEEEEEETT-TCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEE
T ss_pred eCCCceEcCCEEE-------CCEEEEEcCCCeEEEEECC-CCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEE
Confidence 433322 111221 2577888888988888764 44433333221111 01222334444444 688899
Q ss_pred EEEcCCCceEEEecCCCCCCCC--C---CCCCceeecCCCeEEEEeCCeEEEEEEeeCC
Q 004914 204 VYDAANDQRITFIERPRGSPRP--E---LLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~--~---~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (724)
.+|..+++.+............ . .........++..++.+.++.+..+|..++.
T Consensus 202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp EEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred EEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence 9999999988765543211000 0 0011111234444444478889888876654
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.40 E-value=0.023 Score=55.96 Aligned_cols=154 Identities=7% Similarity=-0.042 Sum_probs=96.1
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEeC---CCCEEEEeccCCceEEEe-C
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFD-Y 132 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~-~ 132 (724)
+++++++ ..++....+.|.+++.++.....+.. .......++++|++..|..+.. .+.|..+++.......+. .
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence 3555444 44455567899999997765433322 2245688999997665544443 467888888764433332 2
Q ss_pred CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE--cCCcEEEEEcCC
Q 004914 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA--NDAGVKVYDAAN 209 (724)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~--~d~~i~i~d~~~ 209 (724)
.- ...+++++|+ ++..+++....+.|..++.. +.....+........+++..+..+.++ ..+.|..+|..+
T Consensus 165 ~~~~P~gia~d~~----~~~lyv~d~~~~~I~~~~~~--g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 165 NLGLPNGLTFDAF----SSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp TCSCEEEEEEETT----TTEEEEEETTTTEEEEEETT--EEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCcEEEEcCC----CCEEEEEECCCCEEEEEecC--CCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 22 6789999997 23455566666788887663 322222222223345777776555555 467899999999
Q ss_pred CceEEEecC
Q 004914 210 DQRITFIER 218 (724)
Q Consensus 210 ~~~~~~i~~ 218 (724)
++.+..+..
T Consensus 239 g~~~~~i~~ 247 (267)
T 1npe_A 239 SKEMDTFHP 247 (267)
T ss_dssp TEEEEEECC
T ss_pred CCceEEEcc
Confidence 988887754
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.40 E-value=0.0061 Score=59.21 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=106.1
Q ss_pred EEecCC-EEEEEeCCCeEEEEec-CCCeeEEEcCCccce--eEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCC
Q 004914 60 VAVAER-MIALGTHAGTVHILDF-LGNQVKEFPAHTAAV--NDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (724)
Q Consensus 60 ~s~~~~-~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~V--~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (724)
+..+++ +..+.+.+|.|+++|+ +|+.+..+ -. ... ..+++.. ++..+....++.+.++|..+.+.. ++....
T Consensus 60 L~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 60 LVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 444445 5556666789999999 56665555 22 222 2345542 344455557899999999986654 455433
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CC---CCeEEEEEe-CCEEEEE-cCCcEEEEEc
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GE---GPVHVVKWR-TSLIAWA-NDAGVKVYDA 207 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~---~~V~~l~~~-~~~la~~-~d~~i~i~d~ 207 (724)
.-++++ ++ ++.++.+..++.+.+++.. .......+.- +. ..+..+.|. |.+.+.. .++.|.+.|.
T Consensus 137 eGwGLt--~D-----g~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 137 EGWGLC--YW-----NGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp CCCCEE--EE-----TTEEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECT
T ss_pred ceeEEe--cC-----CCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeC
Confidence 224444 34 4556665667888887764 2333333322 22 234667787 6655555 4778999999
Q ss_pred CCCceEEEecCCCC-------CCCCCCCCCceeec--CCCeEEEE--eCC
Q 004914 208 ANDQRITFIERPRG-------SPRPELLLPHLVWQ--DDTLLVIG--WGT 246 (724)
Q Consensus 208 ~~~~~~~~i~~~~~-------~~~~~~~~~~l~~~--~~~~l~~g--~d~ 246 (724)
.+++.+..+..... ..........++|. .+.++++| |..
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~ 258 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR 258 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence 99999998876421 11122345678883 45667777 654
No 242
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.37 E-value=0.067 Score=52.06 Aligned_cols=187 Identities=8% Similarity=0.077 Sum_probs=115.0
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc-e---EEEeC
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-K---MKFDY 132 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~---~~~~~ 132 (724)
+++++++ +.++...++.|..+|.++..++.+.- -.....+|++.++|.++++.-.++.+.++++.... + .....
T Consensus 33 a~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~ 112 (255)
T 3qqz_A 33 TWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI 112 (255)
T ss_dssp EEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC
T ss_pred EEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc
Confidence 4556555 56668889999999999887766632 22457788999988877776667889998876532 1 11211
Q ss_pred ------CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc--cCCccceEecc-------CCCCeEEEEEe---CCE
Q 004914 133 ------HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK--WLGYRDQVLHS-------GEGPVHVVKWR---TSL 193 (724)
Q Consensus 133 ------~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~--~~~~~~~~l~~-------~~~~V~~l~~~---~~~ 193 (724)
.. ...+++|+|. ++.|.++...+...+|... ..+.....+.. .-..+.+++++ +++
T Consensus 113 ~~~~~~~N~g~EGLA~d~~-----~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l 187 (255)
T 3qqz_A 113 PLQESPTNCGFEGLAYSRQ-----DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL 187 (255)
T ss_dssp CCSSCCCSSCCEEEEEETT-----TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred ccccccccCCcceEEEeCC-----CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence 12 6689999998 5555555544444444332 11112222211 22346789998 577
Q ss_pred EEEE-cCCcEEEEEcCCCceEEEecCCCCCCC---CCCCCCceee-cCCCeEEEEeCCeEEEE
Q 004914 194 IAWA-NDAGVKVYDAANDQRITFIERPRGSPR---PELLLPHLVW-QDDTLLVIGWGTYIKIA 251 (724)
Q Consensus 194 la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~---~~~~~~~l~~-~~~~~l~~g~d~~i~vw 251 (724)
++.+ .+..+.++|.. ++.+..+....+... .-...-.+++ .++++++++..+.++++
T Consensus 188 liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f 249 (255)
T 3qqz_A 188 LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRF 249 (255)
T ss_dssp EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEE
T ss_pred EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEE
Confidence 7777 56788899965 557766655532111 0112345777 67777777766755555
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.069 Score=56.06 Aligned_cols=179 Identities=11% Similarity=0.066 Sum_probs=107.4
Q ss_pred EEEecCCEEEEEeCC------CeEEEEecC-CCeeEEEcCCcc---ceeEEEEcCCCCEEEEEe----------------
Q 004914 59 CVAVAERMIALGTHA------GTVHILDFL-GNQVKEFPAHTA---AVNDLSFDVDGEYVGSCS---------------- 112 (724)
Q Consensus 59 ~~s~~~~~la~g~~d------g~I~i~d~~-~~~~~~~~~h~~---~V~~l~~s~~g~~l~s~~---------------- 112 (724)
.++|+| ++++...+ |.|.++|.. ++.+.++....+ --.++.|+|+++.+++..
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 355777 66555444 789999985 666666653222 123578899999888874
Q ss_pred ---CCCCEEEEeccCCceE-EEeCC---CCeeEEEe--CCCCCCCCCCEEEEec------CCCeEEEEecccCC--ccce
Q 004914 113 ---DDGSVVINSLFTDEKM-KFDYH---RPMKAISL--DPDYTRKMSRRFVAGG------LAGHLYLNSKKWLG--YRDQ 175 (724)
Q Consensus 113 ---~Dg~v~iwd~~~~~~~-~~~~~---~~v~~v~~--~p~~~~~~~~~l~~g~------~dg~v~l~~~~~~~--~~~~ 175 (724)
.+.+|.+||+.++++. ++... .....+.| +|+ ++++.+++ .+++|.+|... .+ ...+
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pd-----g~~aYV~~e~~~~~Lss~V~v~~~d-~g~~~~~~ 296 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPT-----KLMGFINMVVSLKDLSSSIWLWFYE-DGKWNAEK 296 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTT-----CCEEEEEEEEETTTCCEEEEEEEEE-TTEEEEEE
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCC-----CCEEEEEEeeeccCCCceEEEEEec-CCceeEEE
Confidence 3689999999987643 45443 24455555 998 66666655 56677766443 12 0011
Q ss_pred Ee--cc----------------CCCCeEEEEEe--CCEEEEE--cCCcEEEEEcC---CCceEEEecCCCCC--------
Q 004914 176 VL--HS----------------GEGPVHVVKWR--TSLIAWA--NDAGVKVYDAA---NDQRITFIERPRGS-------- 222 (724)
Q Consensus 176 ~l--~~----------------~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~---~~~~~~~i~~~~~~-------- 222 (724)
++ .. ..+....|.++ |+++.++ ..+.|.+||+. +.+.+..+......
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 11 00 01345677787 7888887 37789999986 23555555443210
Q ss_pred CCCCCCCCceee-cCCCeEEEEe
Q 004914 223 PRPELLLPHLVW-QDDTLLVIGW 244 (724)
Q Consensus 223 ~~~~~~~~~l~~-~~~~~l~~g~ 244 (724)
......+..+.+ .+++.|.++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 000112344555 5777777775
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.26 E-value=0.0024 Score=66.36 Aligned_cols=68 Identities=7% Similarity=-0.050 Sum_probs=50.9
Q ss_pred eEEEEecCCEEEEEe----------CCCeEEEEec-CCCeeEEEcCC-------ccceeEEEEcCCCCEEEEEeC--CCC
Q 004914 57 ASCVAVAERMIALGT----------HAGTVHILDF-LGNQVKEFPAH-------TAAVNDLSFDVDGEYVGSCSD--DGS 116 (724)
Q Consensus 57 i~~~s~~~~~la~g~----------~dg~I~i~d~-~~~~~~~~~~h-------~~~V~~l~~s~~g~~l~s~~~--Dg~ 116 (724)
-..++|+++.+.++. .++.|.+||. +++.+.++..+ ......+.++|||++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 357899999887775 3689999999 66666776433 123467899999999888864 456
Q ss_pred EEE--EeccC
Q 004914 117 VVI--NSLFT 124 (724)
Q Consensus 117 v~i--wd~~~ 124 (724)
|.+ +|..+
T Consensus 149 v~V~~iD~~t 158 (368)
T 1mda_H 149 AGLSVPGASD 158 (368)
T ss_dssp EEEEETTTEE
T ss_pred EEEEEEchhh
Confidence 888 89866
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.26 E-value=0.0038 Score=60.66 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=103.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCe--eEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPM--KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY 172 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v--~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~ 172 (724)
....+.|+ ++.+.++.+.+|.|+++|+.++++..-...... .++++..+ +.+++.-.++.+.+++.. +.+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~------~Ly~ltw~~~~v~V~D~~-Tl~ 127 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE------RLYQLTWTEGLLFTWSGM-PPQ 127 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS------CEEEEESSSCEEEEEETT-TTE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC------EEEEEEccCCEEEEEECC-cCc
Confidence 45788887 467788899999999999999876432133333 44666554 677777778899998875 444
Q ss_pred cceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEE
Q 004914 173 RDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKI 250 (724)
Q Consensus 173 ~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~v 250 (724)
....+... +.-.++++.+..+..+ .++.|.++|..+.+.+..+.-... ...-.....+.|.++..++.. .++.|.+
T Consensus 128 ~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 128 RERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEeCCEEEEEECCCCeEEE
Confidence 44444432 2235777888777777 577899999999998887765431 111123345677777666555 4778888
Q ss_pred EEEeeCC
Q 004914 251 ASIKTNQ 257 (724)
Q Consensus 251 w~~~~~~ 257 (724)
.|..++.
T Consensus 206 IDp~TG~ 212 (268)
T 3nok_A 206 IDPATGT 212 (268)
T ss_dssp ECTTTCB
T ss_pred EeCCCCc
Confidence 8876654
No 246
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.23 E-value=0.018 Score=65.26 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=104.6
Q ss_pred EEEEecCCEEEEEeCCC-------------------eEEEEec-CCCeeEEEcC--Cc-------cceeEEEEcCCC---
Q 004914 58 SCVAVAERMIALGTHAG-------------------TVHILDF-LGNQVKEFPA--HT-------AAVNDLSFDVDG--- 105 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg-------------------~I~i~d~-~~~~~~~~~~--h~-------~~V~~l~~s~~g--- 105 (724)
.+++++++.+.+++.++ .|..+|. +|+.+..++. |. ....-+....+|
T Consensus 248 ~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~ 327 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR 327 (677)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE
T ss_pred eeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe
Confidence 35677888888888765 5899998 6777655543 21 112222333467
Q ss_pred CEEEEEeCCCCEEEEeccCCceE-EEeCCC------------Ce------------------------eEEEeCCCCCCC
Q 004914 106 EYVGSCSDDGSVVINSLFTDEKM-KFDYHR------------PM------------------------KAISLDPDYTRK 148 (724)
Q Consensus 106 ~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~------------~v------------------------~~v~~~p~~~~~ 148 (724)
..++.++.+|.+.++|..++++. .+.... ++ ..++++|+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~---- 403 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ---- 403 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT----
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC----
Confidence 67899999999999999998764 232211 11 14677777
Q ss_pred CCCEEEEecCC-------------------------------------------CeEEEEecccCCccceEeccCCCCeE
Q 004914 149 MSRRFVAGGLA-------------------------------------------GHLYLNSKKWLGYRDQVLHSGEGPVH 185 (724)
Q Consensus 149 ~~~~l~~g~~d-------------------------------------------g~v~l~~~~~~~~~~~~l~~~~~~V~ 185 (724)
+..+++...+ |.+..|+.. +++....+.. ..++.
T Consensus 404 -~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~~-~~~~~ 480 (677)
T 1kb0_A 404 -TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSVEH-VSPWN 480 (677)
T ss_dssp -TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEEEE-SSSCC
T ss_pred -CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeecCC-CCCCc
Confidence 5666664321 566666653 3333332222 22222
Q ss_pred EEEE--eCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEE
Q 004914 186 VVKW--RTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI 242 (724)
Q Consensus 186 ~l~~--~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~ 242 (724)
+..+ .+.+++.+ .|+.+++||..+++.+..+..+.+. ....+.| .+++.+++
T Consensus 481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-----~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV-----VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-----CSCCEEEEETTEEEEE
T ss_pred CcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc-----ccCCEEEEeCCEEEEE
Confidence 2222 25666666 6999999999999999988766432 2233555 45554433
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.22 E-value=0.028 Score=63.88 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=50.0
Q ss_pred EEEEecCCEEEEEeCCCe-------------------EEEEec-CCCeeEEEcC--Cc-------cceeEEEEcCCCC--
Q 004914 58 SCVAVAERMIALGTHAGT-------------------VHILDF-LGNQVKEFPA--HT-------AAVNDLSFDVDGE-- 106 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~-------------------I~i~d~-~~~~~~~~~~--h~-------~~V~~l~~s~~g~-- 106 (724)
.+++++++.+.+++.+|. |..+|. +|+.+..++. |. .++.......+|+
T Consensus 240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~ 319 (689)
T 1yiq_A 240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR 319 (689)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence 356777889999988874 999999 6777766643 21 1121122223565
Q ss_pred -EEEEEeCCCCEEEEeccCCceE
Q 004914 107 -YVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 107 -~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.++.++.+|.++++|..++++.
T Consensus 320 ~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 320 KVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEEECCCCeEEEEECCCCCEe
Confidence 7889999999999999998764
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.22 E-value=0.074 Score=51.07 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=103.5
Q ss_pred EEecCCEEEEE-eCC--CeEEEEec-CCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceE-EEeCC
Q 004914 60 VAVAERMIALG-THA--GTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKM-KFDYH 133 (724)
Q Consensus 60 ~s~~~~~la~g-~~d--g~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~-~~~~~ 133 (724)
+..+++.|..+ +.. ..|+.+|+ +|+.+..+..... .....+.+.++.| +....++.+.++|..+.+.. ++...
T Consensus 26 L~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~ 104 (243)
T 3mbr_X 26 LFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP 104 (243)
T ss_dssp EEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC
Confidence 44445554444 443 48999999 6666665543322 2222223334444 44556899999999986654 45544
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc--CC---CCeEEEEEe-CCEEEEE-cCCcEEEEE
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GE---GPVHVVKWR-TSLIAWA-NDAGVKVYD 206 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~--~~---~~V~~l~~~-~~~la~~-~d~~i~i~d 206 (724)
..-++++. + +..++++..++.+.+++.. .......+.- +. ..+..+.|. |.+.+.. .+..|.+.|
T Consensus 105 ~~Gwglt~--d-----g~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 105 GEGWALTS--D-----DSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARID 176 (243)
T ss_dssp SCCCEEEE--C-----SSCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEEC
T ss_pred CCceEEee--C-----CCEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEE
Confidence 43345553 4 3444444557788887764 2233333322 21 345667777 6655555 477999999
Q ss_pred cCCCceEEEecCCCCCC-------CCCCCCCceee-c-CCCeEEEE--eCC
Q 004914 207 AANDQRITFIERPRGSP-------RPELLLPHLVW-Q-DDTLLVIG--WGT 246 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~-------~~~~~~~~l~~-~-~~~~l~~g--~d~ 246 (724)
..+++.+..+......+ ........++| + .+.++++| |..
T Consensus 177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~ 227 (243)
T 3mbr_X 177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM 227 (243)
T ss_dssp TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 99999999887653211 12234566888 3 34566666 553
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.16 E-value=0.0073 Score=58.12 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=104.7
Q ss_pred EEEcCCc--cceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEE-EeCCCCe--eEEEeCCCCCCCCCCEEEEecCC
Q 004914 87 KEFPAHT--AAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMK-FDYHRPM--KAISLDPDYTRKMSRRFVAGGLA 159 (724)
Q Consensus 87 ~~~~~h~--~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~-~~~~~~v--~~v~~~p~~~~~~~~~l~~g~~d 159 (724)
.++ .|. .....+.|+. +..+.|.+.+| .|+.+|+.++++.. ....... .++++..+ +.++..-.+
T Consensus 13 ~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~------~ly~ltw~~ 84 (243)
T 3mbr_X 13 KRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRD------RLIQLTWRN 84 (243)
T ss_dssp EEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT------EEEEEESSS
T ss_pred EEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCC------EEEEEEeeC
Confidence 344 454 4567899986 67777888765 89999999988754 4444333 34555443 666777778
Q ss_pred CeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCC
Q 004914 160 GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDT 238 (724)
Q Consensus 160 g~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 238 (724)
+.+.+++.. +......+.... .-.++++.+..+..+ .++.|.++|..+.+.+..+.-... ...-.....+.|.++.
T Consensus 85 ~~v~v~D~~-tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLA-TLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWVNGE 161 (243)
T ss_dssp SEEEEEETT-TTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEETTE
T ss_pred CEEEEEECC-cCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEeCCE
Confidence 899998875 344444444322 225777777666656 577899999999988887765421 1111123456677777
Q ss_pred eEEEE-eCCeEEEEEEeeCC
Q 004914 239 LLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 239 ~l~~g-~d~~i~vw~~~~~~ 257 (724)
.++.. ..+.|.+.|..++.
T Consensus 162 lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp EEEEETTTTEEEEECTTTCB
T ss_pred EEEEECCCCeEEEEECCCCC
Confidence 66665 47788888877654
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.16 E-value=0.1 Score=52.55 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=103.4
Q ss_pred EEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEEEeC---C
Q 004914 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMKFDY---H 133 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~~~~---~ 133 (724)
+++++++++++...++.|..||..+.....+.. .....+++++++|+.+++..... .|..++..++++..+.. .
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~ 116 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA 116 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc
Confidence 577788877777788999999998765443332 34688999999999766654432 46667777776654321 1
Q ss_pred CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCc-cceE---------eccCCCCeEEEEEeCCEEEEE--cCCc
Q 004914 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY-RDQV---------LHSGEGPVHVVKWRTSLIAWA--NDAG 201 (724)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~-~~~~---------l~~~~~~V~~l~~~~~~la~~--~d~~ 201 (724)
.....++..+. +..+++...+|.+..++... +. .... ....-....++...+..+.++ ..+.
T Consensus 117 ~~~~g~~~~~~-----~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 117 IFLNGITPLSD-----TQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190 (306)
T ss_dssp SCEEEEEESSS-----SEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred cccCcccccCC-----CcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence 24456665554 44555555678877766531 10 1100 001112345565556666555 3678
Q ss_pred EEEEEcCC-Cce--EEEecCCCCCCCCCCCCCceee-cCCCeEEEE-eCCeEEEEE
Q 004914 202 VKVYDAAN-DQR--ITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 202 i~i~d~~~-~~~--~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (724)
|..|++.. ++. ...+... ..+..+++ .++.++++. .++.|.+++
T Consensus 191 I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 191 LLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp EEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred EEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 99999864 321 1111100 12345666 456554444 467788876
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.11 E-value=0.0047 Score=59.99 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=99.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEE-EeCCCCe--eEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc
Q 004914 95 AVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMK-FDYHRPM--KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~-~~~~~~v--~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (724)
....+.|+ ++..+.|++.+| .|+++|+.++++.. +...... .++++..+ +.+++.-.++.+.+++..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~------~ly~ltw~~~~v~v~D~~- 115 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD------KIVGLTWKNGLGFVWNIR- 115 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT------EEEEEESSSSEEEEEETT-
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC------EEEEEEeeCCEEEEEECc-
Confidence 35788898 677788888877 89999999988753 4444433 34555443 566666678889998875
Q ss_pred CCccceEeccCCCCeEEEEEeCCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCe
Q 004914 170 LGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY 247 (724)
Q Consensus 170 ~~~~~~~l~~~~~~V~~l~~~~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~ 247 (724)
+......+.-.. .-.++++.+..+..+ .++.|.++|..+.+.+..+.-.... ..-.....+.|.++...+.. .++.
T Consensus 116 t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g-~~~~~lNELe~~~G~lyan~w~~~~ 193 (262)
T 3nol_A 116 NLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG-EELPELNELEWVDGEIFANVWQTNK 193 (262)
T ss_dssp TCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT-EECCCEEEEEEETTEEEEEETTSSE
T ss_pred cCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC-ccccccceeEEECCEEEEEEccCCe
Confidence 444444444322 224667777666655 4667999999999988887654210 01112234677777666555 5778
Q ss_pred EEEEEEeeCC
Q 004914 248 IKIASIKTNQ 257 (724)
Q Consensus 248 i~vw~~~~~~ 257 (724)
|.+.|..++.
T Consensus 194 I~vIDp~tG~ 203 (262)
T 3nol_A 194 IVRIDPETGK 203 (262)
T ss_dssp EEEECTTTCB
T ss_pred EEEEECCCCc
Confidence 8888876654
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.05 E-value=0.022 Score=65.55 Aligned_cols=183 Identities=12% Similarity=0.173 Sum_probs=101.5
Q ss_pred EEEE-ecCCEEEEEeC-CC----eEEEEecCCC-e-e-EEEcCCccceeEEEEcCCCCEEEEEeCC-----CCEEEEecc
Q 004914 58 SCVA-VAERMIALGTH-AG----TVHILDFLGN-Q-V-KEFPAHTAAVNDLSFDVDGEYVGSCSDD-----GSVVINSLF 123 (724)
Q Consensus 58 ~~~s-~~~~~la~g~~-dg----~I~i~d~~~~-~-~-~~~~~h~~~V~~l~~s~~g~~l~s~~~D-----g~v~iwd~~ 123 (724)
.+|| |+|++||.+.. +| +|+++|+.+. . + ..+. ....+++|+|||+.|+....| ..|..+++.
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 4689 99999887654 23 5999999554 3 1 1111 124567899999988877665 257778887
Q ss_pred CCc---eEEEeCC-C-CeeEEEeCCCCCCCCCCEEEEecCC-C--eEEEEecccCC-ccc--eEe-ccCCCCeEEEEEe-
Q 004914 124 TDE---KMKFDYH-R-PMKAISLDPDYTRKMSRRFVAGGLA-G--HLYLNSKKWLG-YRD--QVL-HSGEGPVHVVKWR- 190 (724)
Q Consensus 124 ~~~---~~~~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~~d-g--~v~l~~~~~~~-~~~--~~l-~~~~~~V~~l~~~- 190 (724)
++. ...+... . ...++.|+|+ +++|+..+.+ + .+.+++.. .+ ... ..+ ....++..++.|+
T Consensus 256 t~~~~~~lv~~~~~~~~~~~~~~SpD-----g~~l~~~~~~~~~~~l~~~d~~-~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 256 KLQSEDVCLYEEHNPLFSAFMYKAAD-----TNTLCIGSQSPETAEVHLLDLR-KGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp SCGGGCEEEEECCCTTCEEEEEECTT-----SSEEEEEEECSSCEEEEEEESS-SCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred CCchhcEEEEecCCCceEEEEEECCC-----CCEEEEEecCCCCceEEEEECC-CCCCCceeEEeecCCCCceEEEeeee
Confidence 753 2333322 2 5678899999 7777665432 2 34444443 12 122 333 3345667778766
Q ss_pred CCEE-EEEc-C--C--cEEEEEcCCC-ceEE-EecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEe
Q 004914 191 TSLI-AWAN-D--A--GVKVYDAAND-QRIT-FIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 191 ~~~l-a~~~-d--~--~i~i~d~~~~-~~~~-~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~ 254 (724)
|..+ +.++ + + .|..+++.++ .... .+... ....+..+.|.++.++++. .++..++|-+.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-----~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-----EDVFMESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-----SSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-----CCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 5544 4443 3 2 3555665542 2111 12111 1112334555555555555 77776665554
No 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.98 E-value=0.18 Score=51.82 Aligned_cols=187 Identities=11% Similarity=0.070 Sum_probs=112.1
Q ss_pred CceEEEEecC-CEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEE-EEeCCCCEEEEeccCCceEEEeC
Q 004914 55 DAASCVAVAE-RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINSLFTDEKMKFDY 132 (724)
Q Consensus 55 ~~i~~~s~~~-~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd~~~~~~~~~~~ 132 (724)
+..+|...++ .+|..+ ....|+.+++.+.....+......+..++|++.+..|. +-...+.|..+++.++....+..
T Consensus 34 d~~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 3455655443 345444 34568888887766544434444578899997666554 44567889999998766544322
Q ss_pred -C-CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEEc--C-CcEEE
Q 004914 133 -H-RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWAN--D-AGVKV 204 (724)
Q Consensus 133 -~-~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~~--d-~~i~i 204 (724)
. ....++++++. ++..+++-...+.|.+.+.. +.....+. ..-....+++++ +..+.++. . +.|..
T Consensus 113 ~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 113 TGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLD--GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETT--SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCC--CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 2 26688999876 24566666667778777653 44333333 333456788888 46666663 3 56777
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE--eCCeEEEEEEe
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (724)
+++........+.. ....+..+++. ++..|..+ ..+.|..+++.
T Consensus 187 ~~~dG~~~~~~~~~------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 187 SSMDGSGRRIIADT------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EETTSCSCEESCCS------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCcEEEEEC------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 77764333222111 11234567774 56666666 45667777754
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.98 E-value=0.15 Score=58.97 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=117.8
Q ss_pred CceEEEEecC-CEEEEEeCCCeEEEEecCCCeeEEEcC-------CccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCc
Q 004914 55 DAASCVAVAE-RMIALGTHAGTVHILDFLGNQVKEFPA-------HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (724)
Q Consensus 55 ~~i~~~s~~~-~~la~g~~dg~I~i~d~~~~~~~~~~~-------h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (724)
..|.++..+. ..|-+|+.+|-|..++........+.. ....|.++..+++|... .|+.+|-+..|+..++.
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCc
Confidence 4577766542 356678887888899874443333321 23569999999998855 46677779999988877
Q ss_pred eEEEeC---------CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-----CCCCeEEEEEe-
Q 004914 127 KMKFDY---------HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-----GEGPVHVVKWR- 190 (724)
Q Consensus 127 ~~~~~~---------~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-----~~~~V~~l~~~- 190 (724)
...+.. .. .|.++..+++ ++.+.+|+.++-+..++.. ......+.. ....|.++...
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~-----g~~lWigt~~~Gl~~~d~~--~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEK-----KSLVYIGTHAGGLSILHRN--SGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETT-----TTEEEEEETTTEEEEEETT--TCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCC-----CCEEEEEeCcCceeEEeCC--CCcEEEeecCCCCcCCCeeEEEEECC
Confidence 655421 12 7889988877 5636667776677777654 122222221 24568888876
Q ss_pred -CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeC
Q 004914 191 -TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 191 -~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
|.+.+++. +++.+|+..+++.................+.++.......+.+|..+-+..|+..++
T Consensus 462 ~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~ 527 (795)
T 4a2l_A 462 EGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGL 527 (795)
T ss_dssp SSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETT
T ss_pred CCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCC
Confidence 66666655 789999988775543221100001112334555554344455553366888887654
No 255
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.97 E-value=9.1e-05 Score=77.68 Aligned_cols=146 Identities=13% Similarity=0.031 Sum_probs=73.6
Q ss_pred EEecCCEEEEEeCCCeEEEEec-CCCeeEEEcCCccc-ee-EEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEeCCCC
Q 004914 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAA-VN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRP 135 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~-~~~~~~~~~~h~~~-V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~ 135 (724)
+..++..+++++.+|.|+.||. +|+.+..+..+... +. +..+. .+..+++|+.||.++.||..+|+.. .+..+..
T Consensus 45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~ 123 (369)
T 2hz6_A 45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA 123 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------
T ss_pred eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc
Confidence 4456777888899999999999 67766555443221 11 01111 3556788888999999999987653 3333322
Q ss_pred eeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe------CCEEEEEcCCcEEEEEcCC
Q 004914 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR------TSLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~------~~~la~~~d~~i~i~d~~~ 209 (724)
..++|+ +..+++++.+|.+..|+.. ++.....+..+. .....+. +.+++++.++.+..||..+
T Consensus 124 ---~~~~p~-----~~~v~~~~~dg~v~a~d~~-tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 124 ---DSLSPS-----TSLLYLGRTEYTITMYDTK-TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSS-SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ---cccccc-----CCEEEEEecCCEEEEEECC-CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 344565 6788889999999998764 344332222110 1111122 3455555789999999999
Q ss_pred CceEEEec
Q 004914 210 DQRITFIE 217 (724)
Q Consensus 210 ~~~~~~i~ 217 (724)
|+.+....
T Consensus 193 G~~~W~~~ 200 (369)
T 2hz6_A 193 GDVLWIQN 200 (369)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEec
Confidence 98877654
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.93 E-value=0.19 Score=50.77 Aligned_cols=187 Identities=13% Similarity=0.020 Sum_probs=105.7
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCC----CeeEE-EcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEEE-
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLG----NQVKE-FPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKF- 130 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~----~~~~~-~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~- 130 (724)
.+.+.++ ...+-..++.|..++..+ ..... +...-....++++++.+. ..++-...+.|.+.++.+.....+
T Consensus 36 ~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 115 (316)
T 1ijq_A 36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 115 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE
T ss_pred EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE
Confidence 4555454 444555678999999866 33222 322334568899997555 445556778999999887554443
Q ss_pred eCC-CCeeEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEE
Q 004914 131 DYH-RPMKAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVK 203 (724)
Q Consensus 131 ~~~-~~v~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~ 203 (724)
... ....+++++|. ++..+++.... +.|...+. ++.....+. ..-....+++++ +..+.++ ..+.|.
T Consensus 116 ~~~~~~P~~iavdp~----~g~ly~~d~~~~~~I~~~~~--dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~ 189 (316)
T 1ijq_A 116 RENGSKPRAIVVDPV----HGFMYWTDWGTPAKIKKGGL--NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189 (316)
T ss_dssp ECTTCCEEEEEEETT----TTEEEEEECSSSCEEEEEET--TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ECCCCCcceEEeCCC----CCEEEEEccCCCCeEEEEcC--CCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence 322 27789999996 24444444333 56666554 354444332 233456789998 5667666 356799
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
.+|................ ..+..++...+.++++- ..+.|..++..+
T Consensus 190 ~~d~dg~~~~~~~~~~~~~----~~P~giav~~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 190 SIDVNGGNRKTILEDEKRL----AHPFSLAVFEDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEETTSCSCEEEEECTTTT----SSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEecCCCceEEEeecCCcc----CCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence 9998754333222221111 12334555444444444 455666665433
No 257
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.87 E-value=0.03 Score=63.41 Aligned_cols=183 Identities=13% Similarity=0.169 Sum_probs=110.3
Q ss_pred CCEEEEEeC------CCeEEEEec-CCCeeEEEcCCcc--------------------------------ceeEEEEcCC
Q 004914 64 ERMIALGTH------AGTVHILDF-LGNQVKEFPAHTA--------------------------------AVNDLSFDVD 104 (724)
Q Consensus 64 ~~~la~g~~------dg~I~i~d~-~~~~~~~~~~h~~--------------------------------~V~~l~~s~~ 104 (724)
+..+++++. +|.|+.||. +|+.+..+..... ....++++|+
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 455556654 799999998 7877765543211 1135788999
Q ss_pred CCEEEEEeCCC-------------------CEEEEeccCCceE-EEeC--C--------CCeeEEEeCCCCCCCCC---C
Q 004914 105 GEYVGSCSDDG-------------------SVVINSLFTDEKM-KFDY--H--------RPMKAISLDPDYTRKMS---R 151 (724)
Q Consensus 105 g~~l~s~~~Dg-------------------~v~iwd~~~~~~~-~~~~--~--------~~v~~v~~~p~~~~~~~---~ 151 (724)
+..+..++.++ .|..+|..+++.. .+.. + .....+....+ | .
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d-----G~~~~ 328 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA-----GKPRK 328 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET-----TEEEE
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC-----CcEee
Confidence 99888877664 4999999987754 3332 1 11112222223 4 6
Q ss_pred EEEEecCCCeEEEEecccCCccceEeccCC----------C-Ce------------------------EEEEEe--CCEE
Q 004914 152 RFVAGGLAGHLYLNSKKWLGYRDQVLHSGE----------G-PV------------------------HVVKWR--TSLI 194 (724)
Q Consensus 152 ~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~----------~-~V------------------------~~l~~~--~~~l 194 (724)
.+++++.+|.+++++.. +|+....+.... + ++ ..++++ +.++
T Consensus 329 ~l~~~~~~G~l~~lD~~-tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRT-NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETT-TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECC-CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 78889999999998864 443322221100 0 00 145666 2444
Q ss_pred EEE-cC-------------------------------------------CcEEEEEcCCCceEEEecCCCCCCCCCCCCC
Q 004914 195 AWA-ND-------------------------------------------AGVKVYDAANDQRITFIERPRGSPRPELLLP 230 (724)
Q Consensus 195 a~~-~d-------------------------------------------~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~ 230 (724)
.+. ++ +.|..||+.+++.+..++..... ...
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-----~~g 482 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW-----NGG 482 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC-----CCC
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC-----cCc
Confidence 432 21 67999999999988776543211 111
Q ss_pred ceeecCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 231 HLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 231 ~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
.+. ..+..+++| .++.+++||..+++.
T Consensus 483 ~~~-~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 483 TLT-TAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEE-ETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceE-eCCCEEEEECCCCcEEEEECCCCce
Confidence 121 355666667 899999999988653
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.85 E-value=0.17 Score=53.08 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=104.8
Q ss_pred EEecCCEE-EEEeCCCeEEEEecCCC----e-eEEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEeccCCceEEEeC
Q 004914 60 VAVAERMI-ALGTHAGTVHILDFLGN----Q-VKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKMKFDY 132 (724)
Q Consensus 60 ~s~~~~~l-a~g~~dg~I~i~d~~~~----~-~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 132 (724)
|.+.++.| .+-...+.|+.+++++. . ...+.........+++++. ++..++-...+.|.+.++.++....+..
T Consensus 119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~ 198 (400)
T 3p5b_L 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 198 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE
T ss_pred eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe
Confidence 44434444 44445678888888652 1 2223334456788999984 4455555667889999998765544432
Q ss_pred -CC-CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEE--cCCcEEE
Q 004914 133 -HR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWA--NDAGVKV 204 (724)
Q Consensus 133 -~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~--~d~~i~i 204 (724)
.- ...+++++|. ++.++.+-.. .+.|...+. +|.....+ ...-....+|+++ +..|.++ ..+.|..
T Consensus 199 ~~~~~P~~iavdp~----~g~ly~td~~~~~~I~~~~~--dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 199 ENGSKPRAIVVDPV----HGFMYWTDWGTPAKIKKGGL--NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp CSSCCEEEEEEETT----TTEEEEEECSSSCCEEEEET--TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEecc----cCeEEEEeCCCCCEEEEEeC--CCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 22 6899999997 2344444322 355655544 45444443 3333567889998 5677777 3567889
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+|+........+..+... ..+..++...+.++++- ..+.|..++..+
T Consensus 273 ~d~dG~~~~~~~~~~~~l----~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 273 IDVNGGNRKTILEDEKRL----AHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EETTSCCCEEEEECSSTT----SSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred EeCCCCccEEEEeCCCCC----CCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 998755443333322111 11234444444455555 445566666433
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.85 E-value=0.14 Score=53.49 Aligned_cols=185 Identities=10% Similarity=0.057 Sum_probs=109.3
Q ss_pred eEEEEecC-CEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceEEEeCC-
Q 004914 57 ASCVAVAE-RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKMKFDYH- 133 (724)
Q Consensus 57 i~~~s~~~-~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~~~~~~- 133 (724)
.+|-..+. .+|+.+ ....|+.+++.+.....+.........++|++.+..| ++-...+.|..+++.++....+...
T Consensus 79 ~~C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 79 RSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp SCEEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred CeECCccccceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 34544433 344444 4467888898766554444444567889999766554 4545678899999988765544322
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEEc--C-CcEEEEE
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWAN--D-AGVKVYD 206 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~~--d-~~i~i~d 206 (724)
. ...++++++. ++..+++-...+.|.+.+. .+.....+ ...-....+++++ +..+.++. . +.|..++
T Consensus 158 ~~~p~glavd~~----~g~lY~~d~~~~~I~~~~~--dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 158 LESPGGLAVDWV----HDKLYWTDSGTSRIEVANL--DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CSCCCCEEEETT----TTEEEEEETTTTEEEECBT--TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeC----CCeEEEEcCCCCeEEEEeC--CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 2 6678899876 2455566666677776554 34433333 3333556788888 46666663 3 5677777
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE--eCCeEEEEEEe
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (724)
+........+... ...+..++|. ++..|..+ ..+.|..+++.
T Consensus 232 ~dG~~~~~~~~~~------~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 232 MDGSGRRIIADTH------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp TTSCSCEEEECSS------CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCCCcEEEEECC------CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 7644333222111 1134567773 55556555 45667777654
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.79 E-value=0.036 Score=60.37 Aligned_cols=173 Identities=10% Similarity=0.002 Sum_probs=106.5
Q ss_pred ecCCEEEEEe------------------CCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCC-------
Q 004914 62 VAERMIALGT------------------HAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDG------- 115 (724)
Q Consensus 62 ~~~~~la~g~------------------~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg------- 115 (724)
|+++++.+++ .++.+.++|..... +.++.--. .-..++++|+|+++++++.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 7888887773 35688899985444 34443211 335678999999988887543
Q ss_pred -------------------------------CEEEEeccC--Cce--EEEeCCCCeeEEEeCCCCCCCCCCEEEE-ecCC
Q 004914 116 -------------------------------SVVINSLFT--DEK--MKFDYHRPMKAISLDPDYTRKMSRRFVA-GGLA 159 (724)
Q Consensus 116 -------------------------------~v~iwd~~~--~~~--~~~~~~~~v~~v~~~p~~~~~~~~~l~~-g~~d 159 (724)
.|.|.|..+ +.. ..+.......++.++|+ |+++++ +..+
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPD-----Gk~v~V~~~~s 298 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPD-----KKHLCVAGKLS 298 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTT-----SSEEEEECTTS
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCC-----CCEEEEeCCCC
Confidence 366666665 333 23444446788999999 675554 5567
Q ss_pred CeEEEEecccC-----C------ccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCC----------CceEE
Q 004914 160 GHLYLNSKKWL-----G------YRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAN----------DQRIT 214 (724)
Q Consensus 160 g~v~l~~~~~~-----~------~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~----------~~~~~ 214 (724)
.+|.+++..-. + .....+..+. ....++|+ | .+.++ -|+.|.+||+.+ .+.+.
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ 376 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKD 376 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEE
T ss_pred CeEEEEECcccccccccccCcccceEEEcCCCC-CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEE
Confidence 78999876511 0 0111222233 35678898 6 44444 589999999987 55666
Q ss_pred EecCCCCCCCCCCCCCceee-cCCCeEEEE
Q 004914 215 FIERPRGSPRPELLLPHLVW-QDDTLLVIG 243 (724)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g 243 (724)
.++.+. .++|.......+. .+|+.|+++
T Consensus 377 kidV~y-qpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 377 KLDVHY-QPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp EEECSS-CEEEEEETTTTSTTCCSSEEEEE
T ss_pred Eeeccc-ccccceeccceEeCCCCCEEEEc
Confidence 666543 2222222233333 578888877
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.78 E-value=0.24 Score=57.30 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=114.4
Q ss_pred CCceEEEEecC-CEEEEEeCCCeEEEEecCCCeeEEEcC---------CccceeEEEEcCCCCEEEEEeCCCCEEEEecc
Q 004914 54 NDAASCVAVAE-RMIALGTHAGTVHILDFLGNQVKEFPA---------HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (724)
Q Consensus 54 ~~~i~~~s~~~-~~la~g~~dg~I~i~d~~~~~~~~~~~---------h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (724)
...|.++..+. ..|-+|+.+|-|..|+........+.. ....|.++..+++|+.|..|+.++-+..+|..
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 34577777653 356678888789999986544444321 23579999999999855566776779999998
Q ss_pred CCceEEEeC-----CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-------CCCCeEEEEEe
Q 004914 124 TDEKMKFDY-----HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-------GEGPVHVVKWR 190 (724)
Q Consensus 124 ~~~~~~~~~-----~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-------~~~~V~~l~~~ 190 (724)
++....+.. .. .|.++..+++ +...+. +.+| +..++.. ......+.. ....|.++...
T Consensus 436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~-----g~lwig-t~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 436 SGQVENFNQRNSQLVNENVYAILPDGE-----GNLWLG-TLSA-LVRFNPE--QRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp TCCEEEECTTTSCCSCSCEEEEEECSS-----SCEEEE-ESSC-EEEEETT--TTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred CCcEEEeecCCCCcCCCeeEEEEECCC-----CCEEEE-ecCc-eeEEeCC--CCeEEEccccccccccCCceEEEEEEC
Confidence 887766542 23 7889988887 554444 4444 5566543 122222211 23568888877
Q ss_pred --CCEEEEEcCCcEEEEEcCCCceEEEecCC-CCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEe
Q 004914 191 --TSLIAWANDAGVKVYDAANDQRITFIERP-RGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIK 254 (724)
Q Consensus 191 --~~~la~~~d~~i~i~d~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~ 254 (724)
|.+.+++. +++..|+..+++. .+... .....+...+.++.......+.+|..+-+..|+..
T Consensus 507 ~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~ 570 (795)
T 4a2l_A 507 SHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEK 570 (795)
T ss_dssp TTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEEEETT
T ss_pred CCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCceeECCC
Confidence 66666555 7899999887765 22211 11111222344555533344555533467777653
No 262
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.77 E-value=0.053 Score=61.59 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (724)
+.+..||+.+++.+..++.+... ....+. ..+.++++| .|+.++.||.++++.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~-----~~g~~~-tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIF-----NGGTLS-TAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSC-----CCCEEE-ETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeEEEEECCCCCeEeEccCCCCc-----cCccce-ECCCEEEEECCCCcEEEEECCCCcc
Confidence 66999999999988776544211 011111 356677777 899999999988763
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.74 E-value=0.22 Score=51.95 Aligned_cols=182 Identities=11% Similarity=0.017 Sum_probs=104.2
Q ss_pred EEEecCC-EEEEEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCCE-EEEEeCCCCEEEEeccCCceEEE-eCCC
Q 004914 59 CVAVAER-MIALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKF-DYHR 134 (724)
Q Consensus 59 ~~s~~~~-~la~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~-~~~~ 134 (724)
+|.+.++ ++.+-...+.|+.++.++.....+ .........+++++.+.. .++-...+.|.+.++.+.....+ ...-
T Consensus 122 ~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l 201 (386)
T 3v65_B 122 DFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 201 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC
T ss_pred EEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC
Confidence 3454444 444555678899999877654443 223335577899976554 45555677888888876544433 2222
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEc
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDA 207 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~ 207 (724)
....++++|. ++.++++-... +.|...+. ++.....+. ..-....+++|+ +..|.++ ..+.|..+++
T Consensus 202 ~~P~giavdp~----~g~ly~td~~~~~~I~r~~~--dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 202 EKPRAIALHPM----EGTIYWTDWGNTPRIEASSM--DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp SCEEEEEEETT----TTEEEEEECSSSCEEEEEET--TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred CCCcEEEEEcC----CCeEEEeccCCCCEEEEEeC--CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 7899999997 24444444444 56665544 354444333 333456789998 5666666 3567888887
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEE
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIAS 252 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~ 252 (724)
........+... ...+..++...+.++++. ..+.|..++
T Consensus 276 dG~~~~~~~~~~------~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 276 DGSHRKAVISQG------LPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TSCSCEEEECSS------CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CCCeeEEEEECC------CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 654433332211 112334555444444444 445565554
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.73 E-value=0.09 Score=53.28 Aligned_cols=144 Identities=9% Similarity=0.024 Sum_probs=87.7
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcC--------------------CccceeEEEEcC-CCCEEEEEeCCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA--------------------HTAAVNDLSFDV-DGEYVGSCSDDGS 116 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~--------------------h~~~V~~l~~s~-~g~~l~s~~~Dg~ 116 (724)
.+++++++++.++..+|.|..|+..+..+..+.. ....+.++++++ +|+.+ .+...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEECCCC
Confidence 3677788877789999999999987654444321 013578899998 66544 4444455
Q ss_pred EEEEeccCCceEEEeC----C--CCeeEEEeCC-CCCCCCCCEEEEecC-----------------CCeEEEEecccCCc
Q 004914 117 VVINSLFTDEKMKFDY----H--RPMKAISLDP-DYTRKMSRRFVAGGL-----------------AGHLYLNSKKWLGY 172 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~----~--~~v~~v~~~p-~~~~~~~~~l~~g~~-----------------dg~v~l~~~~~~~~ 172 (724)
+..+|..++....+.. . .....++++| + ++.+++... +|.+..++.. +.
T Consensus 103 i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-----G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~ 175 (322)
T 2fp8_A 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-----GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS--TK 175 (322)
T ss_dssp EEEECTTCEECEEEESEETTEECSCEEEEEECTTT-----CCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT--TT
T ss_pred EEEEeCCCCEEEEecccCCCCcccccceEEEecCC-----CEEEEECCcccccccccceehcccCCCceEEEEeCC--CC
Confidence 8888887654433311 1 1568899999 7 666665432 2556665542 12
Q ss_pred cceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCC
Q 004914 173 RDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAN 209 (724)
Q Consensus 173 ~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~ 209 (724)
....+...-....+++|+ ++.+.++ ..+.|..|++..
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 222222111234568888 5655555 357899999874
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.66 E-value=0.45 Score=48.78 Aligned_cols=148 Identities=10% Similarity=0.033 Sum_probs=91.6
Q ss_pred EEEecCCE-EEEEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEEEe-CCC
Q 004914 59 CVAVAERM-IALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKFD-YHR 134 (724)
Q Consensus 59 ~~s~~~~~-la~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~~-~~~ 134 (724)
+|.+.++. ..+-...+.|+.++.++.....+ ........++++++.+. ..++-...+.|.+.++.+.....+. ..-
T Consensus 79 ~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l 158 (349)
T 3v64_C 79 DFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 158 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC
T ss_pred EEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC
Confidence 34544444 44545678899999876654333 22334567899997555 4455566788999998875544433 222
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEc
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDA 207 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~ 207 (724)
....++++|. ++..+.+-... +.|...+. ++.....+. ..-....+++++ +..|.++ ..+.|..+++
T Consensus 159 ~~P~~iavdp~----~g~ly~td~~~~~~I~r~~~--dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 159 EKPRAIALHPM----EGTIYWTDWGNTPRIEASSM--DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp SCEEEEEEETT----TTEEEEEECSSSCEEEEEET--TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCcceEEEecC----cCeEEEeccCCCCEEEEEeC--CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 7799999997 24455554444 56666554 354444443 233456789998 5667766 3567888888
Q ss_pred CCCce
Q 004914 208 ANDQR 212 (724)
Q Consensus 208 ~~~~~ 212 (724)
.....
T Consensus 233 dG~~~ 237 (349)
T 3v64_C 233 DGSHR 237 (349)
T ss_dssp TSCSC
T ss_pred CCCce
Confidence 75433
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.53 E-value=0.34 Score=48.96 Aligned_cols=153 Identities=7% Similarity=0.073 Sum_probs=96.9
Q ss_pred EEEe-cCCEEEEEeCCCeEEEEecCCCeeEEEc-CCccceeEEEEcCCCCEEEEEe--CCCCEEEEeccCCceEEEeCC-
Q 004914 59 CVAV-AERMIALGTHAGTVHILDFLGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCS--DDGSVVINSLFTDEKMKFDYH- 133 (724)
Q Consensus 59 ~~s~-~~~~la~g~~dg~I~i~d~~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~--~Dg~v~iwd~~~~~~~~~~~~- 133 (724)
++.+ ++++..+-...+.|.+++.+|.....+. .......+++++|.+..|..+. ..+.|...++.......+...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 4554 3445555566789999999876544442 3344668899998766555544 357788888876544443222
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEeCCEEEEE--cCCcEEEEEcCC
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWRTSLIAWA--NDAGVKVYDAAN 209 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~~~~la~~--~d~~i~i~d~~~ 209 (724)
- ..++++++|+ +++.+++-+..+.|..++. ++....++. ...+...++++.+..+.++ ..+.|..++..+
T Consensus 165 l~~Pnglavd~~----~~~lY~aD~~~~~I~~~d~--dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 IYWPNGLTLDYE----EQKLYWADAKLNFIHKSNL--DGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCEEEEEEETT----TTEEEEEETTTTEEEEEET--TSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCCccEEEEecc----CCEEEEEECCCCEEEEEcC--CCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 2 6789999997 2445555556677777665 354443333 2344567788776666666 466788888877
Q ss_pred CceEEEec
Q 004914 210 DQRITFIE 217 (724)
Q Consensus 210 ~~~~~~i~ 217 (724)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76655544
No 267
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.52 E-value=0.25 Score=56.65 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=88.7
Q ss_pred CEEEEEeCCCeEEEEecCCC-----eeEEEcCCccceeEEEEcCCCCE-EEEEeCCCCEEEEeccCCceEEEeCCC--Ce
Q 004914 65 RMIALGTHAGTVHILDFLGN-----QVKEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKFDYHR--PM 136 (724)
Q Consensus 65 ~~la~g~~dg~I~i~d~~~~-----~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~~~~~--~v 136 (724)
.++.+-...+.|+.+++.+. ....+........+|++++.+.. +++-...+.|.+.++.++....+.... ..
T Consensus 437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P 516 (791)
T 3m0c_C 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 516 (791)
T ss_dssp EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence 34445555678888887652 12233334456778999987754 445556789999999876655543322 78
Q ss_pred eEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccceEecc-CCCCeEEEEEe--CCEEEEE--cCCcEEEEEcCCC
Q 004914 137 KAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWR--TSLIAWA--NDAGVKVYDAAND 210 (724)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~ 210 (724)
.+|+++|. .+.++++-... +.|...+. +|....++.. .-....+|+++ +..|.|+ ..+.|..+++...
T Consensus 517 ~gIaVDp~----~g~LYwtD~g~~~~I~~~~~--dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 517 RAIVVDPV----HGFMYWTDWGTPAKIKKGGL--NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEEETT----TTEEEEEECSSSCEEEEEET--TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEecC----CCCEEEecCCCCCeEEEEec--CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 99999997 23444443222 45655443 4655444433 33567889888 5677777 3567888888755
Q ss_pred ceEEEe
Q 004914 211 QRITFI 216 (724)
Q Consensus 211 ~~~~~i 216 (724)
.....+
T Consensus 591 ~~~~v~ 596 (791)
T 3m0c_C 591 NRKTIL 596 (791)
T ss_dssp SCEEEE
T ss_pred ceEEEe
Confidence 444443
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.48 E-value=0.42 Score=48.30 Aligned_cols=184 Identities=13% Similarity=0.016 Sum_probs=105.7
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCee--EEEcCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEEEe-CC
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQV--KEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKFD-YH 133 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~--~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~~-~~ 133 (724)
.|.+. +.+..+-...+.|..++.++... ..+...-....++++++.+. ..++-...+.|.++++.+.....+. ..
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~ 120 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 120 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence 35553 44555556678899998866531 22222234567889997544 5555566788999999875544432 22
Q ss_pred C-CeeEEEeCCCCCCCCCCEEEEec--CCCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEE--cCCcEEEE
Q 004914 134 R-PMKAISLDPDYTRKMSRRFVAGG--LAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWA--NDAGVKVY 205 (724)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~--~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~--~d~~i~i~ 205 (724)
. ....++++|. +..+.... ..+.|...+. +|.....+ ...-..-.+++++ +..|.++ ..+.|..+
T Consensus 121 ~~~P~giavdp~-----~g~ly~td~~~~~~I~r~~~--dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 121 LDQPRAIALDPS-----SGFMYWTDWGEVPKIERAGM--DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp CSSEEEEEEEGG-----GTEEEEEECSSSCEEEEEET--TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCccEEEEeCC-----CCEEEEEecCCCCEEEEEEc--CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 2 7899999997 34444444 2456665544 35444333 2233446789998 5677777 35678888
Q ss_pred EcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 206 DAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
++........+... ...+..++...+..+++- ..+.|..++..+
T Consensus 194 d~dG~~~~~~~~~~------~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 194 NLDGTNRQAVVKGS------LPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp ETTSCSCEEEECSC------CSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCceEEEecCC------CCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 88754333332211 112334444444444444 456677666544
No 269
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.43 E-value=0.14 Score=53.89 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=110.3
Q ss_pred ecCCEE-EEEeCCCeEEEEecCCC-----eeEEEc-------CCccceeEEEEcCCCCEEEEEeCC------CCEEEEec
Q 004914 62 VAERMI-ALGTHAGTVHILDFLGN-----QVKEFP-------AHTAAVNDLSFDVDGEYVGSCSDD------GSVVINSL 122 (724)
Q Consensus 62 ~~~~~l-a~g~~dg~I~i~d~~~~-----~~~~~~-------~h~~~V~~l~~s~~g~~l~s~~~D------g~v~iwd~ 122 (724)
.+++++ +.|..+++|+++|.... ..+.+. .....-..+.++|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 556654 55677899999998432 234442 011134557789999 77776665 78999999
Q ss_pred cCCceE-EEeCCC----CeeEEEeCCCCCCCCCCEEEEec-------------------CCCeEEEEecccCCccceEec
Q 004914 123 FTDEKM-KFDYHR----PMKAISLDPDYTRKMSRRFVAGG-------------------LAGHLYLNSKKWLGYRDQVLH 178 (724)
Q Consensus 123 ~~~~~~-~~~~~~----~v~~v~~~p~~~~~~~~~l~~g~-------------------~dg~v~l~~~~~~~~~~~~l~ 178 (724)
.+.++. ++.... --..+.|+|+ ++.+++.. .+.+|.+|+.. .++....+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~-----~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLP-----NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLT 245 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETT-----TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCC-----CCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEe
Confidence 987765 343222 2345788999 67888874 35789999875 344444444
Q ss_pred cC-C-CCeEEEEE--e--CCEEEEE-------cCCcEEEEEcCCCce--EEEecCCCCCCC---C---------CCCCCc
Q 004914 179 SG-E-GPVHVVKW--R--TSLIAWA-------NDAGVKVYDAANDQR--ITFIERPRGSPR---P---------ELLLPH 231 (724)
Q Consensus 179 ~~-~-~~V~~l~~--~--~~~la~~-------~d~~i~i~d~~~~~~--~~~i~~~~~~~~---~---------~~~~~~ 231 (724)
.. . .....+.| + ++++.++ -+++|.+|....+.. ...+..+..... . ...+..
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 43 2 23345666 4 4444333 345677666554421 112211110000 0 123445
Q ss_pred eee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 232 LVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 232 l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
+.. .+++.|.++ ..+.|.++++..
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 555 578888777 568899999863
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.39 E-value=0.58 Score=47.14 Aligned_cols=152 Identities=10% Similarity=0.042 Sum_probs=94.9
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCCEEEEEeC-C-CCEEEEeccCCceEEEeCCC
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGSCSD-D-GSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~-D-g~v~iwd~~~~~~~~~~~~~ 134 (724)
++.+. +++.++-...+.|.+++.+|.....+ ...-....+++++|.+..+..+.. . +.|...++.......+....
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 44543 44555556778999999987655443 223346789999997665544443 2 67888888765444442222
Q ss_pred --CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEE--cCCcEEEEEc
Q 004914 135 --PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWA--NDAGVKVYDA 207 (724)
Q Consensus 135 --~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~--~d~~i~i~d~ 207 (724)
..++++++|+ +++.+++-+..+.|..++.. +....++.. .-....++++.+..+.++ ..+.|..++.
T Consensus 163 ~~~P~gla~d~~----~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 163 IQWPNGITLDLL----SGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSCEEEEEEETT----TTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEecc----CCEEEEEECCCCeEEEEecC--CCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 7889999987 24455555566778777653 444433322 123456777776666666 3567888887
Q ss_pred CCCceEEEe
Q 004914 208 ANDQRITFI 216 (724)
Q Consensus 208 ~~~~~~~~i 216 (724)
.+++.+..+
T Consensus 237 ~~g~~~~~i 245 (316)
T 1ijq_A 237 LTGSDVNLL 245 (316)
T ss_dssp TTCCCCEEE
T ss_pred CCCcceEEE
Confidence 776655544
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.35 E-value=0.49 Score=49.58 Aligned_cols=185 Identities=11% Similarity=0.056 Sum_probs=108.9
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEE-eCCCCEEEEeccCC----ceEEEeC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSC-SDDGSVVINSLFTD----EKMKFDY 132 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-~~Dg~v~iwd~~~~----~~~~~~~ 132 (724)
+|...++.-++.-+....|+..++.+.....+......+..++|++.+..|..+ ...+.|..+++.+. ....+..
T Consensus 76 ~C~~~~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 76 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp SCCCSTTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred ceeeccccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 343333332333344578999999766554444555678899999866655444 45788888988762 2233322
Q ss_pred -CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe-ccCCCCeEEEEEe--CCEEEEEc---CCcEEE
Q 004914 133 -HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGEGPVHVVKWR--TSLIAWAN---DAGVKV 204 (724)
Q Consensus 133 -~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l-~~~~~~V~~l~~~--~~~la~~~---d~~i~i 204 (724)
.. ...++++++. +++.+++-...+.|.+.+.. +....++ ...-....+|+++ +..+.++. .+.|..
T Consensus 156 ~~~~~p~glavD~~----~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 156 RDIQAPDGLAVDWI----HSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp SSCSCEEEEEEETT----TTEEEEEETTTTEEEEECTT--TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred CCCCCcccEEEEec----CCceEEEECCCCeEEEEeCC--CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 22 7788999885 24566666667778776553 4433333 3333456788887 46677663 356888
Q ss_pred EEcCCCceEEEecCCCCCCCCCCCCCceeec-CCCeEEEE--eCCeEEEEEEe
Q 004914 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (724)
Q Consensus 205 ~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (724)
.++........+... -..+..+++. ++..|..+ ..+.|..+++.
T Consensus 230 ~~~dG~~~~~~~~~~------l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 230 GGLNGVDIYSLVTEN------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp EETTSCSCEEEECSS------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EeCCCCccEEEEECC------CCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 887654433332211 1235567774 56666666 45667777754
No 272
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.34 E-value=0.17 Score=55.97 Aligned_cols=66 Identities=12% Similarity=-0.062 Sum_probs=46.2
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCc----------------hhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhH
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRS----------------ELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAW 461 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~----------------~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~w 461 (724)
..+..+.+.|+|++|+.+.+...... ..-..+....+.-+...|++++|.+.+.+.+..++..|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 44577889999999999987432211 11234666777778889999999998888776554444
Q ss_pred HH
Q 004914 462 ER 463 (724)
Q Consensus 462 e~ 463 (724)
+.
T Consensus 235 ~~ 236 (597)
T 2xpi_A 235 EA 236 (597)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 273
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.28 E-value=0.31 Score=50.48 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=33.2
Q ss_pred HHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
...+++.|+|++|+..++.... .++ -.......+.-++..+++++|...+...+..
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~ 62 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3457788999999887754321 011 0123334455566778888887766655543
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.27 E-value=0.38 Score=55.47 Aligned_cols=189 Identities=11% Similarity=0.035 Sum_probs=111.9
Q ss_pred CCceEEEEecC-CEEEEEeCCCeEEEEecCCCeeEEE----cCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 54 NDAASCVAVAE-RMIALGTHAGTVHILDFLGNQVKEF----PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 54 ~~~i~~~s~~~-~~la~g~~dg~I~i~d~~~~~~~~~----~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
...|.++..+. ..|-+|+.++-+..|+........+ ......|.++..+++|...+ |+.++-+..++..++...
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 34577777754 4566888777788888754433222 12346799999998888655 566667888998887766
Q ss_pred EEeC---CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-C-----CCCeEEEEEe--CCEEEE
Q 004914 129 KFDY---HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-G-----EGPVHVVKWR--TSLIAW 196 (724)
Q Consensus 129 ~~~~---~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~-----~~~V~~l~~~--~~~la~ 196 (724)
.+.. .. .|.++..+++ +. +..|+.. -+..++.. .+ ....+.. . ...|.++... |.+.++
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~-----g~-lwigt~~-Gl~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKN-----KK-IWIGTHA-GVFVIDLA-SK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTT-----SE-EEEEETT-EEEEEESS-SS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred EeccCCCCCCeEEEEEECCC-----CC-EEEEECC-ceEEEeCC-CC-eEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 5542 23 8899988887 44 5555554 46666653 12 2222211 1 3568888777 677666
Q ss_pred EcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 197 ANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 197 ~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
+.++++..||..+++... +....+. ....+.++.......+.+| .+|-+..|+..+
T Consensus 512 t~~~Gl~~~~~~~~~~~~-~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 512 TFGGGVGIYTPDMQLVRK-FNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp ESSSCEEEECTTCCEEEE-ECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred EcCCCEEEEeCCCCeEEE-ccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 666778899987765443 3222211 1223445555333334444 444336666543
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.21 E-value=0.14 Score=58.69 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=66.3
Q ss_pred ceeEEEEc-CCCCEEEEEeC-CC----CEEEEeccCC-ceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCC-----eE
Q 004914 95 AVNDLSFD-VDGEYVGSCSD-DG----SVVINSLFTD-EKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAG-----HL 162 (724)
Q Consensus 95 ~V~~l~~s-~~g~~l~s~~~-Dg----~v~iwd~~~~-~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v 162 (724)
.+...+|| |||++|+-+.. +| +|+++|+.++ +...-.......+++|+|+ ++.|+....+. .|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspD-----g~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPD-----HTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSS-----TTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecC-----CCEEEEEEECCCCCCCEE
Confidence 67889999 99998875543 33 4999999988 6321000012456889999 77776665542 35
Q ss_pred EEEecccCCc-cceEe-cc-CCCCeEEEEEe--CCEEEEE-c---CCcEEEEEcCCC
Q 004914 163 YLNSKKWLGY-RDQVL-HS-GEGPVHVVKWR--TSLIAWA-N---DAGVKVYDAAND 210 (724)
Q Consensus 163 ~l~~~~~~~~-~~~~l-~~-~~~~V~~l~~~--~~~la~~-~---d~~i~i~d~~~~ 210 (724)
.+++.. .+. ....+ .. ......++.|+ |++|+.. . ...|.++|+.++
T Consensus 250 ~~~~lg-t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMG-KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETT-SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECC-CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 555443 121 12223 22 23445678888 6766655 2 235788888765
No 276
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.10 E-value=0.21 Score=55.28 Aligned_cols=79 Identities=14% Similarity=-0.095 Sum_probs=53.3
Q ss_pred chhhHHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhh--ccChhhHHHHHHHHhhcC
Q 004914 396 AEDHIAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLL--RGSASAWERWVFHFAHLR 472 (724)
Q Consensus 396 ~~d~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~--~~~~~~we~~i~~F~~~~ 472 (724)
+...+..+++.|+|++|+.+.+.... .++. ......+..++..|++++|.+.+.+.+ ..+...|...+..+...+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCc--hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 44566889999999999998765321 0111 233456777888999999999888763 445556666666666666
Q ss_pred CCCc
Q 004914 473 QLPV 476 (724)
Q Consensus 473 ~l~~ 476 (724)
+++.
T Consensus 165 ~~~~ 168 (597)
T 2xpi_A 165 DWQG 168 (597)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 5443
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.33 Score=51.47 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=88.8
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CC----CEEEEeccCCce--E
Q 004914 57 ASCVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DG----SVVINSLFTDEK--M 128 (724)
Q Consensus 57 i~~~s~-~~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg----~v~iwd~~~~~~--~ 128 (724)
-.+++| +++.|.+....+.|+.+|..+..+..+.........++|+++|++|..+.. ++ .+.+.+...+.. .
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~ 220 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT 220 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeee
Confidence 446776 345555555558899999987766665555556789999999995555543 22 233334333221 2
Q ss_pred EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccc-eEecc-CCCCeEEEEEe--CCEEEEE--cCCcE
Q 004914 129 KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-QVLHS-GEGPVHVVKWR--TSLIAWA--NDAGV 202 (724)
Q Consensus 129 ~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-~~l~~-~~~~V~~l~~~--~~~la~~--~d~~i 202 (724)
.+.......+++++|+ ++..+++-..++.|..++.. +... ..... ....-.+++|+ |+.+.++ ..+.|
T Consensus 221 ~l~~~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~--~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 221 ELTKGQNCNGAETHPI----NGELYFNSWNAGQVFRYDFT--TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp EEEECSSCCCEEECTT----TCCEEEEETTTTEEEEEETT--TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccCCCceEEEEeCC----CCEEEEEECCCCEEEEEECC--CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 3332336688999994 26777777677888887664 2222 22221 12345688998 6755554 46778
Q ss_pred EEEEcC
Q 004914 203 KVYDAA 208 (724)
Q Consensus 203 ~i~d~~ 208 (724)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 887765
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.98 E-value=0.86 Score=46.10 Aligned_cols=177 Identities=11% Similarity=0.055 Sum_probs=92.4
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCee-EEEcCCccceeEEEEcCCCCEEEEEeCCCCEEE-EeccCCceEEEe-CCC-Cee
Q 004914 62 VAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI-NSLFTDEKMKFD-YHR-PMK 137 (724)
Q Consensus 62 ~~~~~la~g~~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i-wd~~~~~~~~~~-~~~-~v~ 137 (724)
.++..++++ .+|.|..-.=.|..- .....+...+.++.+++++.+++.+. +|.+.. +|-....-..+. ... .+.
T Consensus 131 ~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~ 208 (327)
T 2xbg_A 131 GNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLH 208 (327)
T ss_dssp ETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEE
T ss_pred CCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccc
Confidence 345555555 455443321123332 22334556789999999988776664 455443 332111112222 222 788
Q ss_pred EEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc----CCCCeEEEEEe--CCEEEEEcCCcEEEEEcCCCc
Q 004914 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS----GEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~----~~~~V~~l~~~--~~~la~~~d~~i~i~d~~~~~ 211 (724)
.++++|+ +..+ .++.+|.+.+...+ .+.....+.. ....+.++.+. +.+++++.++.+ .+....++
T Consensus 209 ~~~~~~~-----g~~~-~~~~~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 209 NMGFTPD-----GRLW-MIVNGGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ 280 (327)
T ss_dssp EEEECTT-----SCEE-EEETTTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS
T ss_pred eeEECCC-----CCEE-EEeCCceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc
Confidence 9999888 5555 44556777765311 1222111111 12347888886 577777777766 44555554
Q ss_pred eEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeEEEE
Q 004914 212 RITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKIA 251 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~vw 251 (724)
.-..+..+... ......+.| .++..+++|.+|.|.-+
T Consensus 281 tW~~~~~~~~~---~~~~~~v~~~~~~~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 281 TWQQDVDVKKV---PSNFYKILFFSPDQGFILGQKGILLRY 318 (327)
T ss_dssp SCEECGGGTTS---SSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred ccEEcCccCCC---CCCeEEEEEECCCceEEEcCCceEEEE
Confidence 33333221100 112345666 45566677788876544
No 279
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.89 E-value=0.41 Score=54.03 Aligned_cols=70 Identities=10% Similarity=0.189 Sum_probs=49.0
Q ss_pred EEEecCCEEEEEeCCCe-------------------EEEEec-CCCeeEEEcC--Cc-------cceeEEEEcCCCC---
Q 004914 59 CVAVAERMIALGTHAGT-------------------VHILDF-LGNQVKEFPA--HT-------AAVNDLSFDVDGE--- 106 (724)
Q Consensus 59 ~~s~~~~~la~g~~dg~-------------------I~i~d~-~~~~~~~~~~--h~-------~~V~~l~~s~~g~--- 106 (724)
++.+.++.+.+++.+|. |..+|. +|+.+..++. |. .+.....+..+|+
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 56667788888887764 899998 6777665543 22 2222223334565
Q ss_pred EEEEEeCCCCEEEEeccCCceE
Q 004914 107 YVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.++.++.+|.+.++|..++++.
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCEEEEEECCCCCEe
Confidence 6888999999999999998765
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.83 E-value=0.94 Score=52.11 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=111.7
Q ss_pred CceEEEEec-CCEEEEEeCCCeEEEEecCCCeeEEEc---------------CCccceeEEEEcCCCCEEEEEeCCCCEE
Q 004914 55 DAASCVAVA-ERMIALGTHAGTVHILDFLGNQVKEFP---------------AHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (724)
Q Consensus 55 ~~i~~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~---------------~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (724)
..|.++..+ ...|-+|+..+-|.+++..+.....+. .....|.++..+++|... .|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEE
Confidence 446676664 346778888566888888544332221 134579999999998854 556667788
Q ss_pred EEeccCCceEEEeC----------CC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEe----ccCCCC
Q 004914 119 INSLFTDEKMKFDY----------HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL----HSGEGP 183 (724)
Q Consensus 119 iwd~~~~~~~~~~~----------~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l----~~~~~~ 183 (724)
.++..++....+.. .. .|.++..+++ +. +-+|+.++-+..++.. ......+ ......
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-----g~-lWigt~~~Gl~~~~~~--~~~~~~~~~~~~~~~~~ 408 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-----GK-LWIGTDGGGINVFENG--KRVAIYNKENRELLSNS 408 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-----SC-EEEEEBSSCEEEEETT--EEEEECC-----CCCSB
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-----CC-EEEEeCCCcEEEEECC--CCeEEEccCCCCCCCcc
Confidence 89887765544321 12 6889988887 44 5556655556666543 1111111 113456
Q ss_pred eEEEEEe--CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEeeC
Q 004914 184 VHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTN 256 (724)
Q Consensus 184 V~~l~~~--~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~ 256 (724)
|.++... |.+.+++.++++..|+..+++.... ... ......+.++.......+.+|..+-+..++..++
T Consensus 409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~-~~~---~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~ 479 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII-ELE---KNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASK 479 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC-CST---TTCCCCEEEEEECTTSEEEEEETTEEEEEESSSS
T ss_pred eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe-ccC---CCCCCeEEEEEECCCCCEEEEECCceEEEeCCCC
Confidence 8888876 6666666678899999877754332 211 1112234455554445566664467888876554
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.60 E-value=2.7 Score=44.35 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=29.2
Q ss_pred EEEEec--CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEE
Q 004914 58 SCVAVA--ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS 110 (724)
Q Consensus 58 ~~~s~~--~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 110 (724)
.+++++ +..|.++...+.|+.++..+..+..+........+++|+++|+.+++
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVa 198 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVV 198 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEE
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEE
Confidence 345552 34444544447888888754444444433344666677776664333
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.58 E-value=1.3 Score=50.57 Aligned_cols=173 Identities=10% Similarity=0.038 Sum_probs=100.9
Q ss_pred EeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCE-EEEEeCCCCEEEEeccCC----ceEE-EeCCC-CeeEEEeC
Q 004914 70 GTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTD----EKMK-FDYHR-PMKAISLD 142 (724)
Q Consensus 70 g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~----~~~~-~~~~~-~v~~v~~~ 142 (724)
-+....|+..++.+.....+......+..|+|++.+.. +++-...+.|+.+++.+. .... +.... .+.+++++
T Consensus 400 ~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp EECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 34445688888865554444444556788999986554 455556678988888753 2222 33222 67889998
Q ss_pred CCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEEc--C-CcEEEEEcCCCceEEEe
Q 004914 143 PDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWAN--D-AGVKVYDAANDQRITFI 216 (724)
Q Consensus 143 p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~~--d-~~i~i~d~~~~~~~~~i 216 (724)
+. +++++++-...+.|.+.+.. +....++. ..-....+|+++ +..|.|+. . +.|...++........+
T Consensus 480 ~~----~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 480 WI----HSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TT----TTEEEEEETTTTEEEEEETT--SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred ec----CCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 87 23566666677788777653 54444443 334457889888 35677763 2 56888887654443333
Q ss_pred cCCCCCCCCCCCCCceeec-CCCeEEEE--eCCeEEEEEEe
Q 004914 217 ERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (724)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (724)
... ..++..++.. .+..|..+ ..+.|..+++.
T Consensus 554 ~~~------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 554 TEN------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CSS------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eCC------CCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 211 1134456653 44555555 44566666653
No 283
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.57 E-value=0.25 Score=49.47 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=39.3
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.....++..|+|++|+.+++........-......++..++..|++++|...+.+.+.
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4557788999999999987653210000112344566677888999999998777665
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.57 E-value=1.4 Score=49.12 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=109.6
Q ss_pred EEEecCCE-EEEEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCCEE-EEEeCCCCEEEEeccCCceEEEe-CCC
Q 004914 59 CVAVAERM-IALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYV-GSCSDDGSVVINSLFTDEKMKFD-YHR 134 (724)
Q Consensus 59 ~~s~~~~~-la~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l-~s~~~Dg~v~iwd~~~~~~~~~~-~~~ 134 (724)
++.+.++. ..+-..++.|+.++++|.....+ ........++++++.+..| ++-...+.|.+.++.++....+. ..-
T Consensus 43 ~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l 122 (628)
T 4a0p_A 43 DFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 122 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSC
T ss_pred EEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC
Confidence 45554444 44556678999999977654333 2233457789999766554 55555788999999875544432 222
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEe-cCCCeEEEEecccCCccceEeccCCCCeEEEEEe--CCEEEEE--cCCcEEEEEcC
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAG-GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAA 208 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g-~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~ 208 (724)
...+++++|. .+..+.+- +..+.|...+. +|.....+...-....+++++ +..|.++ ..+.|..+++.
T Consensus 123 ~~P~~iavdp~----~G~lY~tD~g~~~~I~r~~~--dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 123 DSPRALALDPA----EGFMYWTEWGGKPKIDRAAM--DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp CCEEEEEEETT----TTEEEEEECSSSCEEEEEET--TSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcccEEEccC----CCeEEEeCCCCCCEEEEEeC--CCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 7799999996 24444443 22345554443 465555544444567789998 5777777 35678888887
Q ss_pred CCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeC
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (724)
.+.. ..+... . ..+..++...+.++++- ..+.|...|..++
T Consensus 197 G~~~-~v~~~~--l----~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 197 GLNR-EVIADD--L----PHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SCSC-EEEEEC--C----SCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCce-EEeecc--C----CCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 5443 222211 1 11234555445444444 4667777765444
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.54 E-value=1.1 Score=45.36 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcCCccceeEEEEcCC----CCE----EEEEeC--CCCEEEEec--cCCceEEEe
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVD----GEY----VGSCSD--DGSVVINSL--FTDEKMKFD 131 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~----g~~----l~s~~~--Dg~v~iwd~--~~~~~~~~~ 131 (724)
...++.....+-+.+||++|+.++.+.. +.++.+..-|. |+. ++|.-. +++|.+|++ .++++..+.
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 3455455566789999999999888754 56777766652 322 333334 578999976 445554442
Q ss_pred -------CC-CCeeEEEe--CCCCCCCCCC-EEEEecCCCeEEEEecccCC------ccceEeccCCCCeEEEEEe--CC
Q 004914 132 -------YH-RPMKAISL--DPDYTRKMSR-RFVAGGLAGHLYLNSKKWLG------YRDQVLHSGEGPVHVVKWR--TS 192 (724)
Q Consensus 132 -------~~-~~v~~v~~--~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~------~~~~~l~~~~~~V~~l~~~--~~ 192 (724)
.. ..+..+++ +|. ++. ++++...+|.+..|.....+ +....+.. .+.+.++... ..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~----~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQK----TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTT----TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred ccccCcCCCCCCeeEEEEEecCC----CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 22 35667777 775 233 57777888999888764322 22333333 3467777777 35
Q ss_pred EEEEE-cCCcEEEEEcC-----CCceEEEecCCCCCCCCCCCCCceee---cCC--CeEEEE-eCCeEEEEEEe
Q 004914 193 LIAWA-NDAGVKVYDAA-----NDQRITFIERPRGSPRPELLLPHLVW---QDD--TLLVIG-WGTYIKIASIK 254 (724)
Q Consensus 193 ~la~~-~d~~i~i~d~~-----~~~~~~~i~~~~~~~~~~~~~~~l~~---~~~--~~l~~g-~d~~i~vw~~~ 254 (724)
.|..+ .+..|..|+.. +++.+..+.... . . .-+..++. .++ .+++++ .++++.+|+..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-l-~--aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-L-T--RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-B-C--SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCc-c-c--cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 55555 66667777754 234554432221 1 0 01223333 222 355556 67789999875
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.50 E-value=1.1 Score=49.86 Aligned_cols=187 Identities=13% Similarity=0.050 Sum_probs=104.9
Q ss_pred EEEecCCEEEEE-eCCCeEEEEecCCCe--eEEEcCCccceeEEEEcCCCCE-EEEEeCCCCEEEEeccCCceEEEeCCC
Q 004914 59 CVAVAERMIALG-THAGTVHILDFLGNQ--VKEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 59 ~~s~~~~~la~g-~~dg~I~i~d~~~~~--~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (724)
.+++.++.|... ...+.|..++.+|.. ...+........++++++.+.. .++-...+.|.+.++.++....+....
T Consensus 46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~ 125 (619)
T 3s94_A 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 125 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCC
Confidence 456555555544 456888888887653 2233333356889999996554 455556789999999876554443222
Q ss_pred --CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEEEEEc
Q 004914 135 --PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDA 207 (724)
Q Consensus 135 --~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~i~d~ 207 (724)
...+++++|. +..+........-+++....+|.....+. ..-....+++++ +..|.++ ..+.|..+++
T Consensus 126 l~~P~~Iavdp~-----~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 126 LDQPRAIALDPS-----SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp CSCCCCEEEETT-----TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred CCCCceEEEecC-----CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 7889999997 34444443321223343444565544443 233456788988 5677777 3567888887
Q ss_pred CCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE--eCCeEEEEEEeeCC
Q 004914 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG--WGTYIKIASIKTNQ 257 (724)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g--~d~~i~vw~~~~~~ 257 (724)
........+... . ..+..+++..+ .+..+ ..+.|...|..++.
T Consensus 201 dG~~~~~~~~~~---~---~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 201 DGTNRQAVVKGS---L---PHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCCEEC---------------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCccEEEEeCC---C---CCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 654333222111 1 12334555444 44444 45668777766554
No 287
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.48 E-value=0.67 Score=50.44 Aligned_cols=181 Identities=10% Similarity=-0.009 Sum_probs=108.3
Q ss_pred cCCEEEEEeC-CCeEEEEecCCCe-eEEEcC-CccceeEEEE-c-CCCCEEEEEe------------------CCCCEEE
Q 004914 63 AERMIALGTH-AGTVHILDFLGNQ-VKEFPA-HTAAVNDLSF-D-VDGEYVGSCS------------------DDGSVVI 119 (724)
Q Consensus 63 ~~~~la~g~~-dg~I~i~d~~~~~-~~~~~~-h~~~V~~l~~-s-~~g~~l~s~~------------------~Dg~v~i 119 (724)
||+++.+... ++.|.+.|+.... .+.+.- .......+++ + |+++++..++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887766554 6689999996544 342322 2235778887 5 9999988885 2357888
Q ss_pred EeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCC---------------eEEEEeccc------CC-----c
Q 004914 120 NSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAG---------------HLYLNSKKW------LG-----Y 172 (724)
Q Consensus 120 wd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg---------------~v~l~~~~~------~~-----~ 172 (724)
.|..+.++. ++........++++|+ ++++++.+.+. .+.+.+..- .| .
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spd-----Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYE-----GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSS-----SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EECCCCeEEEEEEeCCCccceEECCC-----CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999886653 3443334567889998 77777776443 233332100 00 1
Q ss_pred cceEeccCC-------------CCeEEEEEe--CCEEEEE--cCCcEEEEEcCCCc------------eEEEecCCCCCC
Q 004914 173 RDQVLHSGE-------------GPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQ------------RITFIERPRGSP 223 (724)
Q Consensus 173 ~~~~l~~~~-------------~~V~~l~~~--~~~la~~--~d~~i~i~d~~~~~------------~~~~i~~~~~~~ 223 (724)
...++.... ....++.++ |+++.++ .+..|.++|+.+.+ ....++..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---- 330 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---- 330 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC----
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC----
Confidence 122222111 122356666 6777766 47889999998653 23332211
Q ss_pred CCCCCCCceee-cCCCeEEEE-eCCeEEEEEEee
Q 004914 224 RPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 224 ~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
..+..++| .++...++. -++.|.+|++.+
T Consensus 331 ---~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 ---LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ---SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ---CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 23456777 566434444 788999999876
No 288
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.47 E-value=0.96 Score=49.92 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=36.9
Q ss_pred CeEEEEec-CCCeeEEEcC--Cc--------cceeEEEEc-CCCC---EEEEEeCCCCEEEEeccCCceE
Q 004914 74 GTVHILDF-LGNQVKEFPA--HT--------AAVNDLSFD-VDGE---YVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 74 g~I~i~d~-~~~~~~~~~~--h~--------~~V~~l~~s-~~g~---~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
+.|.-+|. +|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 68999998 7777665543 32 1221 1221 4674 6888999999999999987754
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.43 E-value=0.18 Score=57.21 Aligned_cols=185 Identities=13% Similarity=0.016 Sum_probs=98.5
Q ss_pred EEEecCCEEEEE-eCCCeEEEEecCC----Cee-EEEcCCccceeEEEEcCCC-CEEEEEeCCCCEEEEeccCCceEEEe
Q 004914 59 CVAVAERMIALG-THAGTVHILDFLG----NQV-KEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKMKFD 131 (724)
Q Consensus 59 ~~s~~~~~la~g-~~dg~I~i~d~~~----~~~-~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~~~~ 131 (724)
+|.+.++.|... ...+.|+.+++.+ ... ..+.........|++++.+ +++++-...+.|.+.++.++....+.
T Consensus 412 a~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~ 491 (699)
T 1n7d_A 412 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 491 (699)
T ss_dssp EEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC
T ss_pred ccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE
Confidence 455555555444 4467888888865 222 1121122345678888544 44555556789999998876655443
Q ss_pred CC--CCeeEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEE--cCCcEE
Q 004914 132 YH--RPMKAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA--NDAGVK 203 (724)
Q Consensus 132 ~~--~~v~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~--~d~~i~ 203 (724)
.. .....++++|. ++.++++-... +.|..++. .+....++. ..-....+|+|+ +..|.++ ..+.|.
T Consensus 492 ~~~~~~P~giavDp~----~g~ly~td~~~~~~I~~~~~--dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 492 REQGSKPRAIVVDPV----HGFMYWTDWGTPAKIKKGGL--NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CCSSCCCCCEECCSS----SSCCEECCCSSSCCEEBCCS--SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eCCCCCcceEEEccC----CCcEEEcccCCCCeEEEEeC--CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 22 26788999997 23444443222 55655433 344333332 222345678888 4555555 356788
Q ss_pred EEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEE
Q 004914 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASI 253 (724)
Q Consensus 204 i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~ 253 (724)
.+++........+...... ..+..+++..+.++++. ..+.|..++.
T Consensus 566 ~~d~dG~~~~~~~~~~~~~----~~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRL----AHPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp EECSSSSCCEEECCCSSSC----SSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred EEccCCCceEEEEecCCcC----CCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 8888654333332211111 12334444344444444 4456776664
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.39 E-value=0.85 Score=51.29 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred EEEEe-cCCEEEEEeCCC-----------eEEEEecCCCe---eEEEc-CCccceeEEEEcCCCCEEEEEeC-CCCEEEE
Q 004914 58 SCVAV-AERMIALGTHAG-----------TVHILDFLGNQ---VKEFP-AHTAAVNDLSFDVDGEYVGSCSD-DGSVVIN 120 (724)
Q Consensus 58 ~~~s~-~~~~la~g~~dg-----------~I~i~d~~~~~---~~~~~-~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iw 120 (724)
.++.+ +++++++|+.++ .+.+||..... +.... .+.....++++..+|+.++.|+. ++.+.+|
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 270 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence 34566 788888887542 58889984433 22222 23333445678889999999884 5689999
Q ss_pred eccCCceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEec-CC-----CeEEEEec
Q 004914 121 SLFTDEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGG-LA-----GHLYLNSK 167 (724)
Q Consensus 121 d~~~~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~-~d-----g~v~l~~~ 167 (724)
|..++....+ ...+.-.+++..++ ++.++.|+ .+ ..+.+|+.
T Consensus 271 d~~t~~W~~~~~~~~~R~~~s~~~~~d-----g~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 271 DSSSDSWIPGPDMQVARGYQSSATMSD-----GRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp EGGGTEEEECCCCSSCCSSCEEEECTT-----SCEEEECCCCCSSSCCCCEEEEET
T ss_pred cCcCCceeECCCCCccccccceEEecC-----CeEEEEeCcccCCcccccceEeCC
Confidence 9988654433 22333345566666 68888888 34 35677764
No 291
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.36 E-value=0.86 Score=46.98 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCCCC
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQLP 475 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~l~ 475 (724)
..+++.|++++|....+................+..+...|+|++|...+.+.+..++ ..|-.....+...++.+
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHH
Confidence 4567899999999887543210001123455556667788999999998887765433 23444455555555543
No 292
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.31 E-value=0.76 Score=51.79 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEeeCC
Q 004914 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (724)
Q Consensus 200 ~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (724)
+.|..||..+++.+...+.+... ....+. ..+.++++| .++.++.||.++++
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~-----~~~~~~-t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHW-----NGGTLS-TAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSC-----CCCEEE-ETTTEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCcEEEEccCCCCC-----cCceeE-eCCCEEEEECCcccchhhhhhcCh
Confidence 67999999999988765543211 111122 345666677 88999999987765
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.30 E-value=1.4 Score=44.26 Aligned_cols=144 Identities=10% Similarity=0.076 Sum_probs=93.1
Q ss_pred EEEecCCEEEEEe-CCCeEEEEecCCCeeEEE-cCC-------ccceeEEEE---cCCCCEEEEEe-------------C
Q 004914 59 CVAVAERMIALGT-HAGTVHILDFLGNQVKEF-PAH-------TAAVNDLSF---DVDGEYVGSCS-------------D 113 (724)
Q Consensus 59 ~~s~~~~~la~g~-~dg~I~i~d~~~~~~~~~-~~h-------~~~V~~l~~---s~~g~~l~s~~-------------~ 113 (724)
.|...+..+.+++ ..|+|..|+..+.....+ ... ...+.+|.| +|+|+++++.. .
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 5666555555555 799999999964432222 111 114688999 68877777543 1
Q ss_pred CCCEEEEecc---CCce-EEEeC------------CC--CeeEEEeCCCCCCCCCCEEEEecCC-CeEEEEecccCCccc
Q 004914 114 DGSVVINSLF---TDEK-MKFDY------------HR--PMKAISLDPDYTRKMSRRFVAGGLA-GHLYLNSKKWLGYRD 174 (724)
Q Consensus 114 Dg~v~iwd~~---~~~~-~~~~~------------~~--~v~~v~~~p~~~~~~~~~l~~g~~d-g~v~l~~~~~~~~~~ 174 (724)
+..|..+|+. +++. ..... .. ....++.+++ |+..++++.. +.|...+. ++...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-----GnaYVt~s~~~~~I~rV~p--dG~~~ 171 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-----GNSYVAFALGMPAIARVSA--DGKTV 171 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-----SCEEEEEEESSCEEEEECT--TSCCE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-----CCEEEeCCCCCCeEEEEeC--CCCEE
Confidence 5678999998 5543 33321 12 5789999999 8999988887 77665544 34433
Q ss_pred eEeccC------CCCeEEEEEe--CCEEEEE-cCCcEEEEEcCC
Q 004914 175 QVLHSG------EGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (724)
Q Consensus 175 ~~l~~~------~~~V~~l~~~--~~~la~~-~d~~i~i~d~~~ 209 (724)
..+... ....++|++. |..+++. +.+.+..+|+..
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 322111 1225689998 6677666 778899999874
No 294
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.19 E-value=0.87 Score=45.85 Aligned_cols=299 Identities=14% Similarity=0.015 Sum_probs=134.6
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC---hhhHHHHHHHHhhcCCCCc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAHLRQLPV 476 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~---~~~we~~i~~F~~~~~l~~ 476 (724)
-..++..|+|++|+...+........-..+....+..++..|+|++|...+.+.+... ...|-.....+...++.+.
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 3567889999999998765422000112455666777888999999999888777533 2334444444444444322
Q ss_pred ccccCcCC---CCC--CCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHH
Q 004914 477 LVPYMPTE---NPR--LRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAEL 551 (724)
Q Consensus 477 L~~~l~~~---~~~--l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 551 (724)
=..++... .|. -....+..+ ..... .......-... ...=+.+..+..++..+.........+..++.+
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~----~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQL-VKADE----MQRLRSQALDA-FDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHH-HHHHH----HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccChHHHHHHH-HHHHH----HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 22211111 110 001111100 00000 00000000000 000112333344444444444555677788889
Q ss_pred HHhcCCHHHHHHHHHHcCC--c---hhhHHH----HhcCChHHHHHHHHHHHccChhHHH--HHhhhcCCCCC-hHHHHH
Q 004914 552 YVIDGHYEKAFSLYADLMK--P---YIFDFI----ENHNLHDAIREKVVQLMLLDCKRAV--SLLIQNKDLIT-PSEVVT 619 (724)
Q Consensus 552 y~~~~~~~~al~~~~~~~~--~---~~~~~i----~~~~l~~~~~~~~~~L~~~~~~~~~--~ll~~~~~~~~-~~~vi~ 619 (724)
|...|++++|+.++-+.-. + .+...+ ...+-++...+.....++.+|.... ..+..-. .+. .-....
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~a~ 242 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-KLNKLIESAE 242 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999988876421 1 111111 1223333333444444444333211 0000000 000 000011
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcCCCCChh---hHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhc-CCCch
Q 004914 620 QLLNARDKCDSRYFLHLYLHALFEVNPHAGKD---FHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVK-RDLLR 694 (724)
Q Consensus 620 ~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~---~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~-~~~~~ 694 (724)
.+... +.......+++.+....+..... .+..+...|. .-+.++-+.+++ +++++.+. ...+-
T Consensus 243 ~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 243 ELIRD----GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS--------EVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--------HHHHHCTTCHHHHH
T ss_pred HHHHc----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH--------HHHHhCcccHHHHH
Confidence 11111 22333345666666666542211 1222333343 223344444433 23333221 12556
Q ss_pred hHHHHHhccCChHHHHHHHHHHh
Q 004914 695 EQVFILGRMGNTKHALAVIINKL 717 (724)
Q Consensus 695 e~v~Ll~k~g~~~~Al~l~~~~l 717 (724)
.++.+|.++|++++|+..+-.-+
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888999999999998876544
No 295
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.14 E-value=1.1 Score=44.50 Aligned_cols=61 Identities=13% Similarity=-0.176 Sum_probs=41.9
Q ss_pred chhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 396 AEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 396 ~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
+-.....++..|+|++|+.+.+................+..++..|+|++|.+.+.+.+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455677899999999999876542200011234455677788899999999887776653
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=0.93 Score=47.94 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=87.6
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEE-EEecCCC----eEEEEec
Q 004914 95 AVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRF-VAGGLAG----HLYLNSK 167 (724)
Q Consensus 95 ~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l-~~g~~dg----~v~l~~~ 167 (724)
....++++| ++..|..+...+.|+.+|+.++.+..+.... ....++|+++ ++.+ ++...++ .+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~-----G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHE-----ADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTT-----SSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCC-----CCEEEEEeCCCCcccceEEEEeC
Confidence 346889998 3555555555588999999887776654444 7899999999 7744 4443222 2322222
Q ss_pred ccCCccc--eEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeE
Q 004914 168 KWLGYRD--QVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLL 240 (724)
Q Consensus 168 ~~~~~~~--~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l 240 (724)
.+... ..+... ....+++++ |.+.++. .++.|..|+..++........+. ..++..++| ++++.|
T Consensus 213 --~g~~~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-----~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 213 --ESGFKVITELTKG-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-----SGWEFHIQFHPSGNYA 284 (430)
T ss_dssp --GGTSCSEEEEEEC-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-----SSCCEEEEECTTSSEE
T ss_pred --CCceeeeeeeccC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-----CCcceeEEEcCCCCEE
Confidence 22111 222222 234566676 4555554 56789999987665433222221 123556888 577755
Q ss_pred EEE--eCCeEEEEEEee
Q 004914 241 VIG--WGTYIKIASIKT 255 (724)
Q Consensus 241 ~~g--~d~~i~vw~~~~ 255 (724)
.++ ..++|+.++...
T Consensus 285 yv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEEEEEEET
T ss_pred EEEECCCCEEEEEeCCc
Confidence 555 677898888764
No 297
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.00 E-value=1.2 Score=49.04 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=43.7
Q ss_pred EEEecCCEEEEEeCC----------------CeEEEEec-CCCeeEEEcC--Cc--------cceeEEEEcCCCC---EE
Q 004914 59 CVAVAERMIALGTHA----------------GTVHILDF-LGNQVKEFPA--HT--------AAVNDLSFDVDGE---YV 108 (724)
Q Consensus 59 ~~s~~~~~la~g~~d----------------g~I~i~d~-~~~~~~~~~~--h~--------~~V~~l~~s~~g~---~l 108 (724)
++.+....+.+++.+ +.|..+|. +|+.+..++. |. .++. +....+|+ .+
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLL 319 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEE
Confidence 445555666666642 36889998 6776655542 21 2221 22224674 57
Q ss_pred EEEeCCCCEEEEeccCCceE
Q 004914 109 GSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 109 ~s~~~Dg~v~iwd~~~~~~~ 128 (724)
+.++.+|.+.++|..+++..
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EEECTTSEEEEEETTTCCEE
T ss_pred EEeCCCcEEEEEECCCCCEE
Confidence 78889999999999987754
No 298
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.96 E-value=1.8 Score=47.91 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=45.9
Q ss_pred EEEecCCEEEEEeCC----------------CeEEEEec-CCCeeEEEcC--Cc--------cceeEEEEc-CCC---CE
Q 004914 59 CVAVAERMIALGTHA----------------GTVHILDF-LGNQVKEFPA--HT--------AAVNDLSFD-VDG---EY 107 (724)
Q Consensus 59 ~~s~~~~~la~g~~d----------------g~I~i~d~-~~~~~~~~~~--h~--------~~V~~l~~s-~~g---~~ 107 (724)
++.+..+.+.+|+.+ +.|.-+|. +|+.+..++. |. .++. +... .+| ..
T Consensus 247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~ 325 (599)
T 1w6s_A 247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKL 325 (599)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEE
T ss_pred eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEE
Confidence 455567777777765 37889998 6776655543 21 1221 2222 567 46
Q ss_pred EEEEeCCCCEEEEeccCCceE
Q 004914 108 VGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 108 l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
++.++.+|.+.+.|..+++..
T Consensus 326 v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 326 LTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEECCCcEEEEEECCCCCEe
Confidence 777889999999999987754
No 299
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.83 E-value=3.4 Score=40.75 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=37.3
Q ss_pred hHHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhh
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASL 449 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~ 449 (724)
.|.-++..|+|..|+..++.... .++...+.....+..++..|++++|...
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~ 56 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDE 56 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778899999999999986543 3333334445567788899999998874
No 300
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.81 E-value=0.38 Score=49.09 Aligned_cols=58 Identities=16% Similarity=-0.050 Sum_probs=40.6
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..-..++..|+|++|+...+...........+....+..++..|+|++|...+.+.+.
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4557788999999999987754321111123555666777889999999988777665
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.76 E-value=0.26 Score=55.90 Aligned_cols=149 Identities=9% Similarity=0.045 Sum_probs=92.9
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeEEEcC-CccceeEEEEcCCCCEEEEEe-C-CCCEEEEeccCCceEEEeCCC--CeeE
Q 004914 64 ERMIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCS-D-DGSVVINSLFTDEKMKFDYHR--PMKA 138 (724)
Q Consensus 64 ~~~la~g~~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~-~-Dg~v~iwd~~~~~~~~~~~~~--~v~~ 138 (724)
++++++-...+.|.+++..|.....+.. .......|+++|.+.+|..+. . .+.|.+.++.......+.... ..++
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence 4445555567889999998776554432 234567889999765444433 2 377888887664433332222 6788
Q ss_pred EEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEE--cCCcEEEEEcCCCceE
Q 004914 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWA--NDAGVKVYDAANDQRI 213 (724)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~--~d~~i~i~d~~~~~~~ 213 (724)
|+|+|+ +++++++-+..+.|..++.. +....++.. .-....+|++.+..+.|+ ..+.|..++..+++.+
T Consensus 545 lavd~~----~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 545 ITLDLL----SGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EEECTT----TCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred EEEecc----CCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 999997 34566666666778776653 433333332 122345667776677777 3678999998888877
Q ss_pred EEecC
Q 004914 214 TFIER 218 (724)
Q Consensus 214 ~~i~~ 218 (724)
..+..
T Consensus 619 ~~i~~ 623 (699)
T 1n7d_A 619 NLLAE 623 (699)
T ss_dssp ECCCT
T ss_pred EEeec
Confidence 76543
No 302
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.68 E-value=2.3 Score=40.87 Aligned_cols=123 Identities=9% Similarity=0.088 Sum_probs=70.5
Q ss_pred hHHHHHhcccHHHHHHHHHhcC----CCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCC
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQ----GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQL 474 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~----~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l 474 (724)
.-..++..|+|++|+...+... .... +....+..++..|+|++|...+.+.+... .
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--------------- 68 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELAKYDLAQKDIETYFSKV-N--------------- 68 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTTCHHHHHHHHHHHHTTS-C---------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-C---------------
Confidence 4467889999999999876532 2222 33444556778899999998776665521 0
Q ss_pred CcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHh
Q 004914 475 PVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVI 554 (724)
Q Consensus 475 ~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~ 554 (724)
.+......+..+=..+... .+.+ ..+...+..+.........+..++.+|..
T Consensus 69 ----------~~~~~~~~~~~lg~~~~~~-~~~~-----------------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 69 ----------ATKAKSADFEYYGKILMKK-GQDS-----------------LAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp ----------TTTCCHHHHHHHHHHHHHT-TCHH-----------------HHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHHHHHc-ccHH-----------------HHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 1122222232222222222 1221 11222222222223334577788999999
Q ss_pred cCCHHHHHHHHHHcC
Q 004914 555 DGHYEKAFSLYADLM 569 (724)
Q Consensus 555 ~~~~~~al~~~~~~~ 569 (724)
.|++++|+.++-+.-
T Consensus 121 ~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQI 135 (272)
T ss_dssp TTCHHHHHHHHGGGC
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999987743
No 303
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.64 E-value=3 Score=44.82 Aligned_cols=149 Identities=9% Similarity=-0.058 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcC--Cch--hhHHHH----hcCChHHHHHHHHHHHccChhHHHHHhhhcCCCCChH
Q 004914 544 LKEALAELYVIDGHYEKAFSLYADLM--KPY--IFDFIE----NHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPS 615 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~~~--~~~--~~~~i~----~~~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~ 615 (724)
.+..++.+|...|++++|+.++-+.- ++. ++-.+. +.+-++...+.....+..+|....- +.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~--------- 314 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT-YY--------- 314 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH-HH---------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH-HH---------
Confidence 34566678899999999999887642 122 211111 1223333444444444443321100 00
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhcC-CCc
Q 004914 616 EVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVKR-DLL 693 (724)
Q Consensus 616 ~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~~-~~~ 693 (724)
.+...+... +.......+++.++..++.... .+..+..+|. .-+.++-+.+++ +|+++.... ..+
T Consensus 315 ~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 315 HRGQMYFIL----QDYKNAKEDFQKAQSLNPENVY-PYIQLACLLYKQGKFTESEAFFN--------ETKLKFPTLPEVP 381 (537)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHHCTTCSH-HHHHHHHHHHHTTCHHHHHHHHH--------HHHHHCTTCTHHH
T ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCChHHH
Confidence 000111111 2233334666777766665443 4444455543 334444444443 233333222 245
Q ss_pred hhHHHHHhccCChHHHHHHHHH
Q 004914 694 REQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 694 ~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
...+.+|.++|++++|+..+-.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 5678888999999999987654
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.47 E-value=5.1 Score=44.40 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=88.8
Q ss_pred EEecCCEEE-EEeCCCeEEEEecCCCeeEEE-cCCccceeEEEEcCCCC-EEEEEeCCCCEEEEeccCCceEEEeCCC--
Q 004914 60 VAVAERMIA-LGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKFDYHR-- 134 (724)
Q Consensus 60 ~s~~~~~la-~g~~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-- 134 (724)
+.+.++.|. +-...+.|+.++.+|.....+ ........++++++.+. ...+-+..+.|.+.++.++....+....
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 333344444 445578899999876543333 33335678899997554 5555556788999998876544443323
Q ss_pred CeeEEEeCCCCCCCCCCEEEEecC-CCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEEc--CCcEEEEEcC
Q 004914 135 PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWAN--DAGVKVYDAA 208 (724)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~~--d~~i~i~d~~ 208 (724)
...+++++|. .|..+.+-.. .+.|.. ...+|.....+. ..-....+++++ ...|.++. .+.|..+++.
T Consensus 436 ~P~~iavdp~----~G~ly~tD~g~~~~I~r--~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 436 EPRAIVLDPM----VGYMYWTDWGEIPKIER--AALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SEEEEEEETT----TTEEEEEECSSSCEEEE--EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CeeeEEEEcC----CCcEEEecCCCCCEEEE--EccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 7899999997 2444444322 244443 333465444443 334556788888 56777773 4568888876
Q ss_pred CCc
Q 004914 209 NDQ 211 (724)
Q Consensus 209 ~~~ 211 (724)
...
T Consensus 510 G~~ 512 (619)
T 3s94_A 510 GTG 512 (619)
T ss_dssp SCC
T ss_pred CCc
Confidence 443
No 305
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.38 E-value=2.8 Score=41.66 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=83.4
Q ss_pred cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCC-C-eEEEEecccCC
Q 004914 94 AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLA-G-HLYLNSKKWLG 171 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~d-g-~v~l~~~~~~~ 171 (724)
....+++|+++|+.+++-..++.|..||..++....+.....+.+++++++ ++.+++.... + .+..++.. .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~d-----G~l~vad~~~~~~~v~~~d~~-~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSN-----GDLVATGWNADSIPVVSLVKS-DG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTT-----SCEEEEEECTTSCEEEEEECT-TS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCC-----CcEEEEeccCCcceEEEEcCC-CC
Confidence 356789999999977777788999999987654444444447889999998 6766555332 2 34444322 23
Q ss_pred ccceEecc-CCCCeEEEE-EeCC-EEEEE-cCCcEEEEEcCCCce-EEEecCC---CCCCCCCCCCCceeecCCCeEEEE
Q 004914 172 YRDQVLHS-GEGPVHVVK-WRTS-LIAWA-NDAGVKVYDAANDQR-ITFIERP---RGSPRPELLLPHLVWQDDTLLVIG 243 (724)
Q Consensus 172 ~~~~~l~~-~~~~V~~l~-~~~~-~la~~-~d~~i~i~d~~~~~~-~~~i~~~---~~~~~~~~~~~~l~~~~~~~l~~g 243 (724)
........ ......+++ |.+. ++++. .++.|..+|..++.. +...... ......-.....+ -.++..|.++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s~dg~~lyv~ 184 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFGNFLYVS 184 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEETTEEEEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-CcCCCEEEEE
Confidence 22221111 112223443 3343 34444 367788888765431 2111100 0000000112223 2345555555
Q ss_pred --eCCeEEEEEEee
Q 004914 244 --WGTYIKIASIKT 255 (724)
Q Consensus 244 --~d~~i~vw~~~~ 255 (724)
..+.|+++++..
T Consensus 185 d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 185 NTEKMLLLRIPVDS 198 (306)
T ss_dssp ETTTTEEEEEEBCT
T ss_pred eCCCCEEEEEEeCC
Confidence 567888888764
No 306
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.24 E-value=0.31 Score=51.55 Aligned_cols=299 Identities=13% Similarity=0.028 Sum_probs=132.9
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC---hhhHHHHHHHHhhcCCCCc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAHLRQLPV 476 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~---~~~we~~i~~F~~~~~l~~ 476 (724)
...++..|+|++|+.+.+........-.......+..++..|+|++|...+.+.+... ...|-.....+...++...
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3567899999999998775322000113355556677788999999999888777543 2334444444444444322
Q ss_pred ccccCcCC---CCCCCH---HHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHH
Q 004914 477 LVPYMPTE---NPRLRD---TAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAE 550 (724)
Q Consensus 477 L~~~l~~~---~~~l~~---~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 550 (724)
=..++... .|. .. ..+..+...+... .....-..... .=+.+..+...+..+.........+..++.
T Consensus 113 A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 113 AEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-RLRSQALNAFG-----SGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-HHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 22222110 111 11 1111111110000 00000000000 001123333333333333444556777888
Q ss_pred HHHhcCCHHHHHHHHHHcC-----CchhhHHH----HhcCChHHHHHHHHHHHccChhHHHH--HhhhcCCCCChHHHHH
Q 004914 551 LYVIDGHYEKAFSLYADLM-----KPYIFDFI----ENHNLHDAIREKVVQLMLLDCKRAVS--LLIQNKDLITPSEVVT 619 (724)
Q Consensus 551 ly~~~~~~~~al~~~~~~~-----~~~~~~~i----~~~~l~~~~~~~~~~L~~~~~~~~~~--ll~~~~~~~~~~~vi~ 619 (724)
+|...|++++|+.++-+.- +..++..+ .+.+.++.........+..+|....- .+..-......-....
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877642 11221111 12333444444444444444332110 0000000000000011
Q ss_pred HHhcccccCCchhHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHh-cchhhhHHHhhhcCCCCHHHHHHHHhc-CCCch
Q 004914 620 QLLNARDKCDSRYFLHLYLHALFEVNPHAGK---DFHDMQVELYAD-YDLKMLLPFLRSSQHYTLEKAYEICVK-RDLLR 694 (724)
Q Consensus 620 ~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~---~~~~~lv~Ly~~-~~~~~ll~fL~~~~~y~~~~al~~c~~-~~~~~ 694 (724)
.+... +.......+++.++...+.... ..+..+..+|.+ -+.++-+.+++. |+++.+. ...+-
T Consensus 266 ~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 266 ELIRD----GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE--------VLQMEPDNVNALK 333 (450)
T ss_dssp HHHHH----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH--------HHHHCTTCHHHHH
T ss_pred HHHHc----CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHhCcccHHHHH
Confidence 11111 2223333566666666554221 234444555543 223333333322 2222111 12455
Q ss_pred hHHHHHhccCChHHHHHHHHHHh
Q 004914 695 EQVFILGRMGNTKHALAVIINKL 717 (724)
Q Consensus 695 e~v~Ll~k~g~~~~Al~l~~~~l 717 (724)
.++.+|.++|++++|+..+-.-+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 67778889999999988775543
No 307
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.20 E-value=0.26 Score=44.70 Aligned_cols=54 Identities=11% Similarity=-0.106 Sum_probs=36.6
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+.++|+|++|+...+.... .+. -..+....+.-++..|++++|...+.+.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457789999999998765432 111 123445556667788999999887766554
No 308
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.14 E-value=2.1 Score=43.53 Aligned_cols=60 Identities=13% Similarity=-0.141 Sum_probs=42.6
Q ss_pred chhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 396 AEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 396 ~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
+-.....++..|+|++|+.+.+........-..+....+..++..|+|++|...+.+.+.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444567789999999999998754320001134566667778889999999998877765
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.01 E-value=3.7 Score=45.61 Aligned_cols=151 Identities=10% Similarity=0.096 Sum_probs=94.6
Q ss_pred EEEec-CCEEEEEeCCCeEEEEecCCCeeEEEc-CCccceeEEEEcCCCCEEEEEe--CCCCEEEEeccCCceEEEeCCC
Q 004914 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCS--DDGSVVINSLFTDEKMKFDYHR 134 (724)
Q Consensus 59 ~~s~~-~~~la~g~~dg~I~i~d~~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~--~Dg~v~iwd~~~~~~~~~~~~~ 134 (724)
++.+. +++..+-...+.|.+.+++|.....+. ..-....+|+++|....|..+. ..+.|...++.......+...-
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~ 165 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV 165 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC
Confidence 34433 445555566789999999776544432 3334568999998655554443 3567877888775554433333
Q ss_pred -CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEE--cCCcEEEEEcCCCc
Q 004914 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA--NDAGVKVYDAANDQ 211 (724)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~--~d~~i~i~d~~~~~ 211 (724)
...++++++. +++.+++-...+.|...+. .+....++...-....++++.+..+.++ ..+.|...|..+++
T Consensus 166 ~~P~GlalD~~----~~~LY~aD~~~~~I~~~d~--dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 166 GRANGLTIDYA----KRRLYWTDLDTNLIESSNM--LGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SSEEEEEEETT----TTEEEEEETTTTEEEEEET--TSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCcceEEEccc----cCEEEEEECCCCEEEEEcC--CCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 7899999997 2444455555667776655 3443445544444456888886677777 36778888876665
Q ss_pred eEEE
Q 004914 212 RITF 215 (724)
Q Consensus 212 ~~~~ 215 (724)
....
T Consensus 240 ~~~~ 243 (628)
T 4a0p_A 240 NRTI 243 (628)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 4433
No 310
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=94.00 E-value=0.28 Score=50.71 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=62.8
Q ss_pred EEEEecCCEEEEEeC---------CCeEEEEec-CCCeeEEEcCCccceeEEEEcCCCC-EEEEEe-CCCCEEEEeccCC
Q 004914 58 SCVAVAERMIALGTH---------AGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCS-DDGSVVINSLFTD 125 (724)
Q Consensus 58 ~~~s~~~~~la~g~~---------dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~-~Dg~v~iwd~~~~ 125 (724)
.+++++++.+.++.. ++.+.++|. +++.+..+.... ...+++|+|+|+ .+++.. .+++|.++|+.++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 578999887776543 235669999 555556554433 578899999998 566676 5999999999998
Q ss_pred ceE-EEeCCCCeeEEEeCCC
Q 004914 126 EKM-KFDYHRPMKAISLDPD 144 (724)
Q Consensus 126 ~~~-~~~~~~~v~~v~~~p~ 144 (724)
++. ++...+..+++++++.
T Consensus 348 kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 348 QDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp EEEEECCCCSCCCEEECCCC
T ss_pred cEEEEEECCCCCCEEEeecC
Confidence 765 4555567778887764
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.85 E-value=8.1 Score=41.20 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=88.5
Q ss_pred eEEEEe-c-CCEEEEEeCCCeEEEEecCCCeeEEEcCC----ccceeEEEE-------cCCCCEEEEEeCCC-C------
Q 004914 57 ASCVAV-A-ERMIALGTHAGTVHILDFLGNQVKEFPAH----TAAVNDLSF-------DVDGEYVGSCSDDG-S------ 116 (724)
Q Consensus 57 i~~~s~-~-~~~la~g~~dg~I~i~d~~~~~~~~~~~h----~~~V~~l~~-------s~~g~~l~s~~~Dg-~------ 116 (724)
-.+++| + ++++++-...+.|+++|..++.+..+..- ......++| +++|++++.+...+ .
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~ 222 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPS 222 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCce
Confidence 445666 2 44555555557899999977776555322 235788999 99999666665543 2
Q ss_pred EEEEeccC-Cce------EEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc------CCcc----------
Q 004914 117 VVINSLFT-DEK------MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW------LGYR---------- 173 (724)
Q Consensus 117 v~iwd~~~-~~~------~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~------~~~~---------- 173 (724)
|.+.+... +.. ..+.......+++++|+ ++.++++-..++.|..++... .+..
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~----~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI----NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT----TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred EEEEecCCCCceeecccceeeccCCCceEEEEcCC----CCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 55665333 222 12222225568899996 366777777888888887651 2221
Q ss_pred -c-eEecc-CCCCeEEEEEe--CCEEEEE--cCCcEEEEEcC
Q 004914 174 -D-QVLHS-GEGPVHVVKWR--TSLIAWA--NDAGVKVYDAA 208 (724)
Q Consensus 174 -~-~~l~~-~~~~V~~l~~~--~~~la~~--~d~~i~i~d~~ 208 (724)
. ..+.. ....-..++|+ |+.+..+ ..+.|+.++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0 11222 22345789998 6755554 46678886654
No 312
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.63 E-value=5.1 Score=38.65 Aligned_cols=141 Identities=6% Similarity=0.040 Sum_probs=85.0
Q ss_pred EEecCCEEEEEeCCCeEEEEecC--CC--eeEEEc------CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC----C
Q 004914 60 VAVAERMIALGTHAGTVHILDFL--GN--QVKEFP------AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT----D 125 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~--~~--~~~~~~------~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~----~ 125 (724)
+..++.++++.-.++.+.+++.. +. .+.... .++.....++|+|.++.|.++.+.+...+|.+.. .
T Consensus 77 ~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 77 YIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp ECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence 33456565665567889998873 32 122221 2345678999999998887777766666666642 1
Q ss_pred ceEEEe-------CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceE--eccC-------CCCeEEEE
Q 004914 126 EKMKFD-------YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV--LHSG-------EGPVHVVK 188 (724)
Q Consensus 126 ~~~~~~-------~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~--l~~~-------~~~V~~l~ 188 (724)
...... ... .+.+++++|. ++++++....+..+..++.. +..... +... -..-.+|+
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~----tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia 230 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQ----KNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVA 230 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETT----TTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEE
T ss_pred ceeeecchhhccccccCCceeEEEcCC----CCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeE
Confidence 122111 112 6789999998 46777777777778877664 332222 2211 12457888
Q ss_pred Ee--CCEEEEEcCCcEEEEE
Q 004914 189 WR--TSLIAWANDAGVKVYD 206 (724)
Q Consensus 189 ~~--~~~la~~~d~~i~i~d 206 (724)
+. |++.+++..+-++.|.
T Consensus 231 ~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 231 MDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp ECTTCCEEEEETTTEEEEEE
T ss_pred ECCCCCEEEEcCCceEEEEE
Confidence 88 7766666555455443
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.05 E-value=5.7 Score=39.45 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=87.8
Q ss_pred EEecCCEEEEEeC--CCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeCC--------------CCEEEEecc
Q 004914 60 VAVAERMIALGTH--AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD--------------GSVVINSLF 123 (724)
Q Consensus 60 ~s~~~~~la~g~~--dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D--------------g~v~iwd~~ 123 (724)
++.+++.|..... ++.|...+.+|.....+.... + -.++++|.+|.-+... +.|+..++.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--A--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--E--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--e--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 5567887777643 577888888887666665432 2 3568889988877543 356666777
Q ss_pred CCceEEEeCCCCeeEEEeCCCCCCCCCCEEEEec--CCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEEcC--
Q 004914 124 TDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGG--LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWAND-- 199 (724)
Q Consensus 124 ~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~--~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~~d-- 199 (724)
++....+... + +..|+|+ ++.++-.. .++.-.++....++.....+..+.. ..+.|.++.|.++++
T Consensus 97 g~~~~~l~~~-~--~~~~s~~-----g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTVLDPD-P--CIYASLI-----GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEEEECS-C--EEEEEEE-----TTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTT
T ss_pred CCcceEeecC-C--ccEEEEe-----CCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCC
Confidence 6654444322 2 2256666 56666654 4566666766656665555554433 345777888888854
Q ss_pred CcEEEEEcCCCceE
Q 004914 200 AGVKVYDAANDQRI 213 (724)
Q Consensus 200 ~~i~i~d~~~~~~~ 213 (724)
..|...++..+...
T Consensus 167 ~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 167 GQLYRYDTASQSEA 180 (302)
T ss_dssp CCEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEE
Confidence 56777787765544
No 314
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.96 E-value=4.8 Score=40.13 Aligned_cols=150 Identities=13% Similarity=0.042 Sum_probs=82.8
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHH-----------
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWV----------- 465 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i----------- 465 (724)
...+...|+|++|+..++...........+....+.-++..|+|++|...+.+.+...+ ...+.+.
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence 35678899999999998754320001124566677778889999999999988887555 3333322
Q ss_pred ----HHHhhcCCCCcccccCcCC---CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccC
Q 004914 466 ----FHFAHLRQLPVLVPYMPTE---NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSS 538 (724)
Q Consensus 466 ----~~F~~~~~l~~L~~~l~~~---~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 538 (724)
..+...++...-..++... .| -+...+..+-..+... =+.+..+..++..+...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKE------------------GEPRKAISDLKAASKLK 184 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhC
Confidence 2222233222111111110 01 1111222111112111 01123333344444444
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 539 SMTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 539 ~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
......+..++.+|...|++++|+.++-+.
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455667778999999999999999988763
No 315
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.93 E-value=2.3 Score=46.98 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=44.0
Q ss_pred CCEEEEEeC-CCeEEEEec--CCCeeEEEcCCccc-----------eeEEEEcCCCCE----EEEEeCCCCEEEEeccCC
Q 004914 64 ERMIALGTH-AGTVHILDF--LGNQVKEFPAHTAA-----------VNDLSFDVDGEY----VGSCSDDGSVVINSLFTD 125 (724)
Q Consensus 64 ~~~la~g~~-dg~I~i~d~--~~~~~~~~~~h~~~-----------V~~l~~s~~g~~----l~s~~~Dg~v~iwd~~~~ 125 (724)
+..+.+++. ++.|.-+|. +|+.+.++...... ...++++|.+.. |+.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556667777 889999998 67776555432210 123455444444 888889999999999987
Q ss_pred ceE
Q 004914 126 EKM 128 (724)
Q Consensus 126 ~~~ 128 (724)
+..
T Consensus 142 ~~~ 144 (599)
T 1w6s_A 142 ETV 144 (599)
T ss_dssp CEE
T ss_pred CEE
Confidence 764
No 316
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.69 E-value=1.3 Score=47.36 Aligned_cols=55 Identities=16% Similarity=-0.000 Sum_probs=30.5
Q ss_pred HHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+++.|+|++|+..++.... .+. -.......+.-++..|+|++|...+.+.+.
T Consensus 46 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (514)
T 2gw1_A 46 SACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSL 101 (514)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3556667777777766553321 000 113444455566667777777766665544
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.42 E-value=5.3 Score=39.29 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=75.3
Q ss_pred EEEecCCEEEEEeCC-----CeEEEEecCCCe---eEEEcC---CccceeEEEEcCCCCEEEEEeCCC-----CEEEEec
Q 004914 59 CVAVAERMIALGTHA-----GTVHILDFLGNQ---VKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSL 122 (724)
Q Consensus 59 ~~s~~~~~la~g~~d-----g~I~i~d~~~~~---~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~ 122 (724)
+...+++++++|+.+ ..+.+||..... -..+.. .......+.+ ++..++.|+.++ .+.+||+
T Consensus 58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcC
Confidence 445678888888765 468889984333 222211 1111122222 567777776543 4778888
Q ss_pred cCCceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecCCC-----eEEEEecccCCccceEecc---CCCCeEEEEEeC
Q 004914 123 FTDEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLAG-----HLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRT 191 (724)
Q Consensus 123 ~~~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~ 191 (724)
.++.-..+ ...+.-.+++.. + +..++.|+.++ .+..++.. ......+.. .......+.+.+
T Consensus 136 ~~~~W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~~~ 207 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAGLVVA-S-----GVIYCLGGYDGLNILNSVEKYDPH--TGHWTNVTPMATKRSGAGVALLND 207 (301)
T ss_dssp TTTEEEEEEECSSCCBSCEEEEE-T-----TEEEEECCBCSSCBCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETT
T ss_pred CCCeEEECCCCCCCcccceEEEE-C-----CEEEEECCCCCCcccceEEEEeCC--CCcEEeCCCCCcccccceEEEECC
Confidence 77654433 222222222222 3 46778877654 35555542 122222211 122223334446
Q ss_pred CEEEEE-cC-----CcEEEEEcCCCceEE
Q 004914 192 SLIAWA-ND-----AGVKVYDAANDQRIT 214 (724)
Q Consensus 192 ~~la~~-~d-----~~i~i~d~~~~~~~~ 214 (724)
.+++.+ .+ ..+.+||+.+.+-..
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 665555 32 468999998876544
No 318
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.38 E-value=1 Score=49.65 Aligned_cols=111 Identities=15% Similarity=0.026 Sum_probs=68.5
Q ss_pred ecCC---EEEEEeCCCeEEEEec-CCCeeEEEcCCc-------------cce--------------------------eE
Q 004914 62 VAER---MIALGTHAGTVHILDF-LGNQVKEFPAHT-------------AAV--------------------------ND 98 (724)
Q Consensus 62 ~~~~---~la~g~~dg~I~i~d~-~~~~~~~~~~h~-------------~~V--------------------------~~ 98 (724)
++|+ .++.++.+|.++++|. +|+.+..+.... .+| ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4664 5778999999999998 677654443211 111 23
Q ss_pred EEEcCCCCEEEEEe-------------------------------------CCCCEEEEeccCCceE-EEeCCCCeeEEE
Q 004914 99 LSFDVDGEYVGSCS-------------------------------------DDGSVVINSLFTDEKM-KFDYHRPMKAIS 140 (724)
Q Consensus 99 l~~s~~g~~l~s~~-------------------------------------~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~ 140 (724)
++++|+...+...+ .+|.+..||..+++.. ++....++.+..
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~ 470 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT 470 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcccee
Confidence 57788777665543 3478888998887653 443333332222
Q ss_pred eCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec
Q 004914 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH 178 (724)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~ 178 (724)
+... +..+++++.||.++.++.. +++....+.
T Consensus 471 ~~t~-----gg~v~~g~~dg~l~a~D~~-tG~~lw~~~ 502 (571)
T 2ad6_A 471 LYTK-----GGLVWYATLDGYLKALDNK-DGKELWNFK 502 (571)
T ss_dssp EEET-----TTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred EEEC-----CCEEEEEcCCCeEEEEECC-CCCEEEEEe
Confidence 2222 3567778899999998875 555554444
No 319
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.30 E-value=1.8 Score=45.50 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=42.8
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
.....+...|+|++|+...+...........+....+..+...|++++|.+.+.+.+...+
T Consensus 65 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3446688999999999987654220001134556667778889999999998888876544
No 320
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.22 E-value=1.4 Score=39.20 Aligned_cols=55 Identities=11% Similarity=-0.012 Sum_probs=40.6
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+...........+....+..++..|++++|...+.+.+.
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 70 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5577899999999998876542111234666677778889999999987776665
No 321
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.17 E-value=5.8 Score=41.76 Aligned_cols=149 Identities=11% Similarity=0.034 Sum_probs=83.6
Q ss_pred ceeEEEEcCC--CCEEEEEeCCCCEEEEeccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecCC---Ce-EEEEec
Q 004914 95 AVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA---GH-LYLNSK 167 (724)
Q Consensus 95 ~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d---g~-v~l~~~ 167 (724)
...+++|+|+ +..|..+...+.|+.+|..++.+..+.... ...+++++++ ++.+++.... .. +.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~d-----G~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLN-----GDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTT-----CCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCC-----CCEEEEcCCCCcccceEEEEEC
Confidence 3568999985 344444444489999999888877665444 7899999999 7755554321 12 222222
Q ss_pred ccCCcc-ceEeccCCCCeEEEEEe---CCEEEEE-cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEE
Q 004914 168 KWLGYR-DQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLV 241 (724)
Q Consensus 168 ~~~~~~-~~~l~~~~~~V~~l~~~---~~~la~~-~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~ 241 (724)
. .+.. ...+.. -....+++++ |.+.++. .++.|+.++..++.....+...... .....++| +++..|.
T Consensus 215 ~-~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~----~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 215 A-SGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK----GSNFHIVWHPTGDWAY 288 (433)
T ss_dssp G-GTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC----SSCEEEEECTTSSEEE
T ss_pred C-CCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC----CCcccEEEeCCCCEEE
Confidence 1 1111 112221 1223455665 4444444 4667888888777653322111111 12234777 5676566
Q ss_pred EE--eCCeEEEEEEe
Q 004914 242 IG--WGTYIKIASIK 254 (724)
Q Consensus 242 ~g--~d~~i~vw~~~ 254 (724)
++ ..++|+.++..
T Consensus 289 vad~~~~~I~~~~~d 303 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEETTTTEEEEEEBC
T ss_pred EEeCCCCEEEEEeCC
Confidence 65 56778887765
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.95 E-value=8.9 Score=37.68 Aligned_cols=145 Identities=18% Similarity=0.184 Sum_probs=74.5
Q ss_pred EEecCCEEEEEeCCC-----eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCC-----CEEEEeccCCc
Q 004914 60 VAVAERMIALGTHAG-----TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFTDE 126 (724)
Q Consensus 60 ~s~~~~~la~g~~dg-----~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~~~ 126 (724)
...++.++++|+.++ .+.+||.....-..+.. .......+. -++..++.|+.++ .+.+||+.++.
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 445788888887653 57888886554333321 111112222 2567777777654 46778887765
Q ss_pred eEEEe---CCCCeeEEEeCCCCCCCCCCEEEEecCCC-------eEEEEecccCCccceEec---cCCCCeEEEEEeCCE
Q 004914 127 KMKFD---YHRPMKAISLDPDYTRKMSRRFVAGGLAG-------HLYLNSKKWLGYRDQVLH---SGEGPVHVVKWRTSL 193 (724)
Q Consensus 127 ~~~~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~dg-------~v~l~~~~~~~~~~~~l~---~~~~~V~~l~~~~~~ 193 (724)
-..+. ..+.-.+++.. + +..++.|+.++ .+..|+.. ......+. ........+.+.+.+
T Consensus 136 W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~i 207 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV-G-----GLLYAVGGYDVASRQCLSTVECYNAT--TNEWTYIAEMSTRRSGAGVGVLNNLL 207 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE-T-----TEEEEECCEETTTTEECCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EeecCCCCCcccCceEEEE-C-----CEEEEEeCCCCCCCccccEEEEEeCC--CCcEEECCCCccccccccEEEECCEE
Confidence 44432 22222222322 2 46777776532 35555542 11112221 112222333444666
Q ss_pred EEEE-cC-----CcEEEEEcCCCceEE
Q 004914 194 IAWA-ND-----AGVKVYDAANDQRIT 214 (724)
Q Consensus 194 la~~-~d-----~~i~i~d~~~~~~~~ 214 (724)
++.+ .+ ..+.+||..+.+-..
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~ 234 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQ 234 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEee
Confidence 6655 32 368899998776543
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.88 E-value=7.8 Score=38.17 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=74.9
Q ss_pred EEEecCCEEEEEeCC----CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCC------CCEEEEeccCC
Q 004914 59 CVAVAERMIALGTHA----GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD------GSVVINSLFTD 125 (724)
Q Consensus 59 ~~s~~~~~la~g~~d----g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D------g~v~iwd~~~~ 125 (724)
+...++.++++|+.+ ..+.+||.....-..+.. .......+. -++..++.|+.+ ..+.+||..+.
T Consensus 51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 445678888888765 678889986554333221 111112222 256777777765 35888898876
Q ss_pred ceEEEe---CCCCeeEEEeCCCCCCCCCCEEEEecCC---------CeEEEEecccCCccceEecc---CCCCeEEEEEe
Q 004914 126 EKMKFD---YHRPMKAISLDPDYTRKMSRRFVAGGLA---------GHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWR 190 (724)
Q Consensus 126 ~~~~~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~d---------g~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~ 190 (724)
.-..+. ..+.-.+++.. + +..++.|+.+ ..+.+|+.. ......+.. ....-..+...
T Consensus 129 ~W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~ 200 (306)
T 3ii7_A 129 SWHTKPSMLTQRCSHGMVEA-N-----GLIYVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPMIEARKNHGLVFVK 200 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE-T-----TEEEEECCEESCTTTCEECCCEEEEETT--TTEEEEECCCSSCCBSCEEEEET
T ss_pred ceEeCCCCcCCcceeEEEEE-C-----CEEEEECCCCCCCCcccccceEEEeCCC--CCeEEECCCccchhhcceEEEEC
Confidence 644432 22212222222 3 4677777642 235555543 122222221 11222233334
Q ss_pred CCEEEEE-cC-----CcEEEEEcCCCceE
Q 004914 191 TSLIAWA-ND-----AGVKVYDAANDQRI 213 (724)
Q Consensus 191 ~~~la~~-~d-----~~i~i~d~~~~~~~ 213 (724)
+.+++.+ .+ ..+.+||..+.+-.
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 6655554 22 45889999877544
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.66 E-value=11 Score=37.24 Aligned_cols=145 Identities=12% Similarity=0.052 Sum_probs=88.0
Q ss_pred cCCCceEEEEecCCEEEEEe----CCCeEEEEecCCCeeEEEcCCccceeEEEEcCCCCEEEEEeC-CCCEEEEeccCCc
Q 004914 52 LANDAASCVAVAERMIALGT----HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDE 126 (724)
Q Consensus 52 ~~~~~i~~~s~~~~~la~g~----~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~ 126 (724)
+.......+++++++|+... .+..|...+++|.....+..+.. ..++++|+.|.-.+. .+.|.+-++.++.
T Consensus 103 l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 103 LDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp EECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred eecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 33444557899999988776 34567777777776666655533 356778888876665 5678888887765
Q ss_pred eEEEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeCCEEEEEcC---CcEE
Q 004914 127 KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWAND---AGVK 203 (724)
Q Consensus 127 ~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~~~la~~~d---~~i~ 203 (724)
...+... +.. ..++|+ ++.++-....+.-.++....++.....+.. ..+..+...+..|.++.+ ..|.
T Consensus 179 ~~~l~~~-~~~-~~~~P~-----g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~~~~~~~~~g~~Iy~~~~~~~~~i~ 249 (302)
T 3s25_A 179 EALFYDC-NCY-KPVVLD-----DTNVYYMDVNRDNAIVHVNINNPNPVVLTE--ANIEHYNVYGSLIFYQRGGDNPALC 249 (302)
T ss_dssp EEEEECS-CEE-EEEEEE-----TTEEEEEEGGGTTEEEEECSSSCCCEECSC--SCEEEEEEETTEEEEEECSSSCEEE
T ss_pred EEEEeCC-Ccc-ceeeec-----CCEEEEEEcCCCcEEEEEECCCCCeEEEeC--CCcceEEECCCEEEEEECCCCcEEE
Confidence 5544322 222 235587 566665544332444545445655555543 345556667888888733 3455
Q ss_pred EEEcCC
Q 004914 204 VYDAAN 209 (724)
Q Consensus 204 i~d~~~ 209 (724)
..++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 555543
No 325
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.64 E-value=1.3 Score=42.16 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=38.0
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+...........+....+..++..|+|++|.+.+.+.+.
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 99 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467899999999887654320001134556667777889999999998777665
No 326
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.40 E-value=1.2 Score=47.95 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=36.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..+++.|+|++|+...+.... .+. -.......+.-++..|+|++|.+.+.+.+..+
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 457788999999988765322 111 12355555666777899999999888877643
No 327
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.34 E-value=2.9 Score=42.27 Aligned_cols=118 Identities=14% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HhcccHHHHHH-HHHhcCC----CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCccc
Q 004914 404 LEHGWHEKALA-AVEAGQG----RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLV 478 (724)
Q Consensus 404 l~~~~~~~Al~-~~~~~~~----~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~ 478 (724)
.-.++|++|+. ..+.... ............+..++..|+|++|...+.+.+...+.
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------------- 96 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------------------- 96 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------
Confidence 34578999998 6664322 11111123345567778899999999987777653221
Q ss_pred ccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCH
Q 004914 479 PYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHY 558 (724)
Q Consensus 479 ~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 558 (724)
....+..+-..+... .+.+ ..+...+..+.........+..++.+|...|++
T Consensus 97 ----------~~~~~~~l~~~~~~~-g~~~-----------------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 97 ----------HMEAWQYLGTTQAEN-EQEL-----------------LAISALRRCLELKPDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp ----------CHHHHHHHHHHHHHT-TCHH-----------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ----------CHHHHHHHHHHHHHC-cCHH-----------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 112222222222221 1211 122222222222333455777888999999999
Q ss_pred HHHHHHHHHc
Q 004914 559 EKAFSLYADL 568 (724)
Q Consensus 559 ~~al~~~~~~ 568 (724)
++|+.++-+.
T Consensus 149 ~~A~~~~~~~ 158 (368)
T 1fch_A 149 RQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 328
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=90.82 E-value=2.9 Score=38.51 Aligned_cols=56 Identities=9% Similarity=-0.117 Sum_probs=38.6
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...++..|+|++|+...+...........+....+..++..|++++|...+.+.+.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35678899999999987653220001134555667777889999999988777665
No 329
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.26 E-value=3.8 Score=43.65 Aligned_cols=71 Identities=8% Similarity=-0.014 Sum_probs=46.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQ 473 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~ 473 (724)
..+++.|+|++|+...+.... .++ .......+..++..|+|++|.+.+.+.+..++ ..|-.....+...++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 567889999999998765422 111 34556667778889999999998887775432 334333444444443
No 330
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.18 E-value=22 Score=37.91 Aligned_cols=101 Identities=13% Similarity=0.040 Sum_probs=60.5
Q ss_pred EecCCEEEEEeCCC-------eEEEEecCC--Cee-----EEEcCCccceeEEEEcCC-CCEEEEEeCCCCEEEEecc--
Q 004914 61 AVAERMIALGTHAG-------TVHILDFLG--NQV-----KEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLF-- 123 (724)
Q Consensus 61 s~~~~~la~g~~dg-------~I~i~d~~~--~~~-----~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~-- 123 (724)
+++|+.+.+....+ .|.+++... ... ..+... .....++++|+ +.++++-..++.|..+|+.
T Consensus 201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 67888665655443 366665422 221 222211 23456788994 5566677778899999997
Q ss_pred -----CCce-------------EEEeC-CC-CeeEEEeCCCCCCCCCCE-EEEecCCCeEEEEec
Q 004914 124 -----TDEK-------------MKFDY-HR-PMKAISLDPDYTRKMSRR-FVAGGLAGHLYLNSK 167 (724)
Q Consensus 124 -----~~~~-------------~~~~~-~~-~v~~v~~~p~~~~~~~~~-l~~g~~dg~v~l~~~ 167 (724)
++.. ..+.. .. ....++|+|+ ++. +++-+..+.|+.++.
T Consensus 280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-----G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 280 FKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-----GKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT-----SSEEEEEETTTTEEEEEEE
T ss_pred cccccCceeecccccccccccceeEecCCCCCceEEEEcCC-----CCEEEEEeCCCCEEEEEec
Confidence 5443 11222 22 5689999999 774 455555667776544
No 331
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=89.79 E-value=18 Score=36.46 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=86.4
Q ss_pred CCeEEEEec--CCCeeEEEcC------Cc-cceeEEEE--cCC-CC-EEEEEeCCCCEEEEeccC---Cc-----eEEEe
Q 004914 73 AGTVHILDF--LGNQVKEFPA------HT-AAVNDLSF--DVD-GE-YVGSCSDDGSVVINSLFT---DE-----KMKFD 131 (724)
Q Consensus 73 dg~I~i~d~--~~~~~~~~~~------h~-~~V~~l~~--s~~-g~-~l~s~~~Dg~v~iwd~~~---~~-----~~~~~ 131 (724)
+++|.+|++ ....+..+.. .. ..+..+|+ +|. +. +++....+|.+..|.+.. +. +.++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 578999966 3334544421 11 45667787 774 44 677788889999998842 21 34566
Q ss_pred CCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCC-ccceEe---cc--CCCCeEEEEEe----C--CEEEEE-c
Q 004914 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVL---HS--GEGPVHVVKWR----T--SLIAWA-N 198 (724)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~l---~~--~~~~V~~l~~~----~--~~la~~-~ 198 (724)
....+..++.++. ...+..+-.+..|..++..-.+ .....+ .. -...+.+|+.- + .+++++ .
T Consensus 178 lgsq~EgcvvDd~-----~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 178 MNSQTEGMAADDE-----YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp CSSCEEEEEEETT-----TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CCCCcceEEEcCC-----CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 6668889999988 6788888887554333322111 111222 11 12357888774 2 345555 5
Q ss_pred CCcEEEEEcC-CCceEEEec
Q 004914 199 DAGVKVYDAA-NDQRITFIE 217 (724)
Q Consensus 199 d~~i~i~d~~-~~~~~~~i~ 217 (724)
+++..+||.. +.+.+..+.
T Consensus 253 ~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 253 NSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GTEEEEEESSTTCCEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEE
Confidence 7899999996 666666654
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.62 E-value=5.7 Score=41.19 Aligned_cols=102 Identities=7% Similarity=0.242 Sum_probs=68.8
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecC-CC------------eeEEEcC------CccceeEEEEcCC---CCEEEEEeCCC
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFL-GN------------QVKEFPA------HTAAVNDLSFDVD---GEYVGSCSDDG 115 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~-~~------------~~~~~~~------h~~~V~~l~~s~~---g~~l~s~~~Dg 115 (724)
..++|+|+++|+.+.. .|.|..+. +. ..+.++- ...+|..+-|+|- |..|++-..|+
T Consensus 71 lvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~ 149 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD 149 (452)
T ss_dssp EEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred EEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence 4689999999988665 67777663 21 0122322 2467999999995 56899999999
Q ss_pred CEEEEeccCCc--eEEE-------eC--C-CCeeEEEeCCCCCCCCCCEEEE--ecCCCeEEEE
Q 004914 116 SVVINSLFTDE--KMKF-------DY--H-RPMKAISLDPDYTRKMSRRFVA--GGLAGHLYLN 165 (724)
Q Consensus 116 ~v~iwd~~~~~--~~~~-------~~--~-~~v~~v~~~p~~~~~~~~~l~~--g~~dg~v~l~ 165 (724)
.|++||+.... ...+ .. . ..|.+++|.++ +-.+.+ .+.+|.|+-.
T Consensus 150 ~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~-----~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 150 TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD-----GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT-----SSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC-----CcEEEEEecCCCCCEEEE
Confidence 99999998611 1122 11 1 26788888886 566655 4477887654
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.40 E-value=4.6 Score=37.82 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=60.2
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCC-Ce------eEEEc--CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLG-NQ------VKEFP--AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK- 127 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~-~~------~~~~~--~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~- 127 (724)
.+++|+|.+.++ .+|.++-.+... .. -..+- +.+. ..++.|+|+|.+.++ .||.|.-++-.+...
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~ 120 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD 120 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC
Confidence 367788887777 778777777622 11 11221 1112 478899999998877 569998887644211
Q ss_pred ------EEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEE
Q 004914 128 ------MKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (724)
Q Consensus 128 ------~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (724)
..+.... .+..|.++|+ +.+.++. +|.+.
T Consensus 121 ~Wl~~a~~vg~~gw~~~~~lff~p~-----G~Lyav~--dg~ly 157 (236)
T 1tl2_A 121 NWIARATEVGSGGWSGFKFLFFHPN-----GYLYAVH--GQQFY 157 (236)
T ss_dssp CHHHHSEEEECSSGGGEEEEEECTT-----SCEEEEE--TTEEE
T ss_pred ceeccccEeccCCCCceEEEEECCC-----ceEEEEe--CCcEE
Confidence 1222222 7899999999 6766666 77754
No 334
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=89.34 E-value=6 Score=35.22 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCCCCcccccCcCC---CCCCCHHHHHHHHHHHH
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQLPVLVPYMPTE---NPRLRDTAYEVALVALA 501 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~l~~L~~~l~~~---~~~l~~~~~~~~L~~~l 501 (724)
.|...-+..++.+|+|++|.+.+.+.+..++ ..|-.....+...++.+.-..++... .+.. ...+...-..+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHHHHH
Confidence 3555667778889999999999988886443 34444444455544433322222111 1111 111111111111
Q ss_pred cCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 502 TNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 502 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.. -+.+..+...+...............++.+|...|+|++|+.++-+
T Consensus 85 ~~------------------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 85 MI------------------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HT------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hc------------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 11 1112222333333333444455777888999999999999998876
No 335
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.31 E-value=20 Score=36.26 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=55.0
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCee--EEEc---CCccceeEEEEcCC---CCE-EEEEeCC-----CCEEEEecc
Q 004914 58 SCVAVAERMIALGTHAGTVHILDFLGNQV--KEFP---AHTAAVNDLSFDVD---GEY-VGSCSDD-----GSVVINSLF 123 (724)
Q Consensus 58 ~~~s~~~~~la~g~~dg~I~i~d~~~~~~--~~~~---~h~~~V~~l~~s~~---g~~-l~s~~~D-----g~v~iwd~~ 123 (724)
.++.++|+++ ++...|.|++++ ++... ..+. ........|+|+|+ +.. .++-... +.|..++..
T Consensus 36 ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 36 LAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred EEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence 4577888855 556679999998 55421 1111 12346789999998 444 4444332 567778776
Q ss_pred CCce------EE-Ee--CC-C-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 124 TDEK------MK-FD--YH-R-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 124 ~~~~------~~-~~--~~-~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
.+.+ .. +. .. . ....++|.|+ +.++++.+
T Consensus 114 ~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-----G~Lyv~~G 153 (352)
T 2ism_A 114 GERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-----GMLYVTTG 153 (352)
T ss_dssp SSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-----SCEEEECC
T ss_pred CCCcCceEEEEEeCCCCCCCCcCCceEEECCC-----CCEEEEEC
Confidence 4321 11 22 11 1 4478999999 66666543
No 336
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=89.26 E-value=1.6 Score=38.07 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 403 LLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
+..+|++++|+...+.............-..+.-++..|+|++|.+.+.+.+..
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 60 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV 60 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346889999999887665422222334445566678899999999987777763
No 337
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.22 E-value=1.4 Score=41.49 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+..++...........+....+..++..|++++|.+.+.+.+.
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5567788888888876643220001123455556666778888888876666554
No 338
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=89.18 E-value=1.6 Score=40.93 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+++.|+|++|+...+.... .+. -.......+.-++..|++++|...+.+.+..++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP 70 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 568899999999999875432 111 123555666677889999999998888776443
No 339
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=88.98 E-value=2.3 Score=46.80 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred CCCEEEEeccCCceE-EEeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec
Q 004914 114 DGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH 178 (724)
Q Consensus 114 Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~ 178 (724)
+|.+..||+.+++.. +.....++.+-.+... +..+++|+.||.++.++.. +|+....+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ta-----gglvf~g~~dg~l~A~D~~-tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATA-----GNLVFTGTGDGYFKAFDAK-SGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEET-----TTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeC-----CCEEEEECCCCcEEEEECC-CCCEEEEec
Confidence 567888888876653 3332222221111112 3566778888888888765 455544443
No 340
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=88.97 E-value=1.9 Score=40.90 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=39.0
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+...|+|++|+...+...........+....+..++..|+|++|...+.+.+.
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35678899999999987654220001134556667778889999999987766655
No 341
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.73 E-value=2 Score=41.27 Aligned_cols=52 Identities=13% Similarity=-0.180 Sum_probs=37.8
Q ss_pred HhcccHHHHHHHHHhcCCC----chhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 404 LEHGWHEKALAAVEAGQGR----SELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 404 l~~~~~~~Al~~~~~~~~~----~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...++|++|+..++..... ......+....+..++..|+|++|...+.+.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3468899999988754331 223456667778888899999999997776665
No 342
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.49 E-value=20 Score=35.23 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=89.6
Q ss_pred EEEecCCEEEEEeCC----CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeC----C-----CCEEEEec
Q 004914 59 CVAVAERMIALGTHA----GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSD----D-----GSVVINSL 122 (724)
Q Consensus 59 ~~s~~~~~la~g~~d----g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~----D-----g~v~iwd~ 122 (724)
|...++.++++|+.+ ..+.+||.....-..+.. ...... ++ ..++..++.|+. + ..+.++|.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-EETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EE-EECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 455577788888743 367888886554333211 111111 11 225666777665 2 36788888
Q ss_pred cCCceEEE---eCCC-CeeEEEeCCCCCCCCCCEEEEecCCC-----eEEEEecccCCccceEe---ccCCCCeEEEEEe
Q 004914 123 FTDEKMKF---DYHR-PMKAISLDPDYTRKMSRRFVAGGLAG-----HLYLNSKKWLGYRDQVL---HSGEGPVHVVKWR 190 (724)
Q Consensus 123 ~~~~~~~~---~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~ 190 (724)
.++....+ ...+ ...++.+ + +..++.|+.++ .+.+|+.. ......+ ......-.++.+.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~-----~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~ 168 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--D-----GHIYAVGGSHGCIHHNSVERYEPE--RDEWHLVAPMLTRRIGVGVAVLN 168 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--T-----TEEEEECCEETTEECCCEEEEETT--TTEEEECCCCSSCCBSCEEEEET
T ss_pred CCCeEeECCCCCcCccccEEEEE--C-----CEEEEEcCCCCCcccccEEEECCC--CCeEeECCCCCccccceEEEEEC
Confidence 87654433 2222 2222322 3 46777777543 35555442 1111111 1112222333344
Q ss_pred CCEEEEE-cC-----CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eC-----CeEEEEEEeeC
Q 004914 191 TSLIAWA-ND-----AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG-----TYIKIASIKTN 256 (724)
Q Consensus 191 ~~~la~~-~d-----~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d-----~~i~vw~~~~~ 256 (724)
+.+++.+ .+ ..+.+||..+.+-...-..+ .. ....+++..++.+++.| .+ +.+.+||+.++
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN----TI-RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS----SC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC----Cc-cccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 6655554 22 45889998877544321111 11 11222333466777777 33 45777776554
No 343
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.45 E-value=4.2 Score=41.93 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++..|+|++|+...+.. +........+....+..++..|+|++|...+.+.+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467899999999987643 222233345667777888899999999987766554
No 344
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.42 E-value=19 Score=35.43 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=72.5
Q ss_pred EEEEecCCEEEEEeC-----C------CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCC--------C
Q 004914 58 SCVAVAERMIALGTH-----A------GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD--------G 115 (724)
Q Consensus 58 ~~~s~~~~~la~g~~-----d------g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D--------g 115 (724)
++...+++++++|+. . ..+..||.....-..+.. .......+.+ ++..++.|+.+ .
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 344557888888873 1 126778875544333211 1111111222 56666777632 3
Q ss_pred CEEEEeccCCceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecC-C-----CeEEEEecccCCccceEec---cCCCC
Q 004914 116 SVVINSLFTDEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGL-A-----GHLYLNSKKWLGYRDQVLH---SGEGP 183 (724)
Q Consensus 116 ~v~iwd~~~~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~-d-----g~v~l~~~~~~~~~~~~l~---~~~~~ 183 (724)
.+.+||..++.-..+ ...+.-.+++.. + ++.++.|+. + ..+.+++.. ......+. .....
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~ 189 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSH-M-----DLVYVIGGKGSDRKCLNKMCVYDPK--KFEWKELAPMQTARSL 189 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-----TEEEEECCBCTTSCBCCCEEEEETT--TTEEEECCCCSSCCBS
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEEE-C-----CEEEEEeCCCCCCcccceEEEEeCC--CCeEEECCCCCCchhc
Confidence 588889887654433 222222223332 2 467777776 2 245666543 11111221 12222
Q ss_pred eEEEEEeCCEEEEE-cCC-----cEEEEEcCCCceEE
Q 004914 184 VHVVKWRTSLIAWA-NDA-----GVKVYDAANDQRIT 214 (724)
Q Consensus 184 V~~l~~~~~~la~~-~d~-----~i~i~d~~~~~~~~ 214 (724)
-.++.+.+.+++.+ .++ .+.+||..+.+-..
T Consensus 190 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 190 FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 23334446655554 332 47889988775443
No 345
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.04 E-value=23 Score=35.33 Aligned_cols=180 Identities=10% Similarity=0.049 Sum_probs=89.6
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-CCeeEEEc---CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE-EEe
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFP---AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~~~~~~~~---~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (724)
+.++..+++.+.+++..|.|.. ..+ |..-.... .+.+.+..+.+.+++..++.+ .+|.|.. ..+.+... ...
T Consensus 82 ~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~ 158 (327)
T 2xbg_A 82 FNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV 158 (327)
T ss_dssp EEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE
T ss_pred EEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee
Confidence 4444444444434455665544 333 33322222 233457778877777666554 4665432 22234332 222
Q ss_pred -CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec-cCCCCeEEEEEe--CCEEEEEcCCcEEEEE
Q 004914 132 -YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWANDAGVKVYD 206 (724)
Q Consensus 132 -~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~-~~~~~V~~l~~~--~~~la~~~d~~i~i~d 206 (724)
... .+.++++.|+ +..++++.. |.+...... .+.....+. .....+..+.+. +.+++.+.++.+++.+
T Consensus 159 ~~~~~~~~~~~~~~~-----~~~~~~g~~-G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~ 231 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPS-----GEYVAVSSR-GSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD 231 (327)
T ss_dssp CSCCCCEEEEEECTT-----SCEEEEETT-SSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred cCCCcceEEEEEcCC-----CcEEEEECC-CcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEec
Confidence 223 7889999988 677766654 554432210 023322222 234567788876 5777777777766654
Q ss_pred cCCCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEEeCCeE
Q 004914 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYI 248 (724)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i 248 (724)
...++.-..+..+. .........+.+ +++..+++|.++.|
T Consensus 232 ~D~G~tW~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 232 PDNSENWGELLSPL--RRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp TTEEEEECCCBCTT--SSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred CCCCCeeEeccCCc--ccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 33233222222210 001112344556 45667777777766
No 346
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=88.03 E-value=8 Score=43.19 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=66.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------CEEEEeccCCceE---EEeCCC--CeeEEEeCCCCCCCCCCEEEEecC-C
Q 004914 98 DLSFDV-DGEYVGSCSDDG-----------SVVINSLFTDEKM---KFDYHR--PMKAISLDPDYTRKMSRRFVAGGL-A 159 (724)
Q Consensus 98 ~l~~s~-~g~~l~s~~~Dg-----------~v~iwd~~~~~~~---~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~-d 159 (724)
+.++.+ +|+.++.|+.++ .+.+||..++... .+...+ ...++++.++ ++.+++|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-----g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-----GQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-----SCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC-----CCEEEeCCCCC
Confidence 456667 788888887643 5789999886543 233333 3445777787 789999884 4
Q ss_pred CeEEEEecccCC-ccceEeccCCCCeEEEEE-eCCEEEEEc--C-----CcEEEEEcCCCceE
Q 004914 160 GHLYLNSKKWLG-YRDQVLHSGEGPVHVVKW-RTSLIAWAN--D-----AGVKVYDAANDQRI 213 (724)
Q Consensus 160 g~v~l~~~~~~~-~~~~~l~~~~~~V~~l~~-~~~~la~~~--d-----~~i~i~d~~~~~~~ 213 (724)
+.+.+|+..-.. .....+......-.++.. .|++++.+. + ..+.+||..+++..
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 568888754110 111111222222333444 467766653 3 46899999877643
No 347
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=87.87 E-value=19 Score=35.38 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=74.1
Q ss_pred EEecCCEEEEEeC----C-----CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCC-----CCEEEEec
Q 004914 60 VAVAERMIALGTH----A-----GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD-----GSVVINSL 122 (724)
Q Consensus 60 ~s~~~~~la~g~~----d-----g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D-----g~v~iwd~ 122 (724)
...++.++++|+. + ..+.+||.....-..+.. .......+.+ +++.++.|+.+ ..+.+||.
T Consensus 67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence 4457788888876 2 357788885554333221 1111122222 56777777644 35788888
Q ss_pred cCCceEEE---eCCC-CeeEEEeCCCCCCCCCCEEEEecCCC-----eEEEEecccCCccceEe---ccCCCCeEEEEEe
Q 004914 123 FTDEKMKF---DYHR-PMKAISLDPDYTRKMSRRFVAGGLAG-----HLYLNSKKWLGYRDQVL---HSGEGPVHVVKWR 190 (724)
Q Consensus 123 ~~~~~~~~---~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~ 190 (724)
.+..-..+ ...+ ...++.+ + +..++.|+.++ .+..++.. ......+ .........+.+.
T Consensus 145 ~~~~W~~~~~~p~~r~~~~~~~~--~-----~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~ 215 (308)
T 1zgk_A 145 ERDEWHLVAPMLTRRIGVGVAVL--N-----RLLYAVGGFDGTNRLNSAECYYPE--RNEWRMITAMNTIRSGAGVCVLH 215 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE--T-----TEEEEECCBCSSCBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEET
T ss_pred CCCeEeECCCCCccccceEEEEE--C-----CEEEEEeCCCCCCcCceEEEEeCC--CCeEeeCCCCCCccccceEEEEC
Confidence 87654433 2222 2222332 3 47778877653 35555542 1111111 1122222333444
Q ss_pred CCEEEEE-cC-----CcEEEEEcCCCceEE
Q 004914 191 TSLIAWA-ND-----AGVKVYDAANDQRIT 214 (724)
Q Consensus 191 ~~~la~~-~d-----~~i~i~d~~~~~~~~ 214 (724)
+.+++.+ .+ ..+.+||+.+.+-..
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 6665555 32 458999998775443
No 348
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.78 E-value=6.1 Score=32.30 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=36.1
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+...|+|++|+.+.+........-..+....+..++..|++++|...+.+.+.
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677899999999987653210001123444556667788999999887665544
No 349
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=87.76 E-value=1.4 Score=41.52 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=30.2
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.-..++..|+|++|+...+........-..+....+..++..|++++|...+.+.+.
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577889999999887754321111234666677778889999999998777665
No 350
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.69 E-value=21 Score=34.87 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred ecCCEEEEEe-CC-----CeEEEEecCCCeeEEEcCC-ccceeEEEEcCCCCEEEEEeCC-----CCEEEEeccCCc---
Q 004914 62 VAERMIALGT-HA-----GTVHILDFLGNQVKEFPAH-TAAVNDLSFDVDGEYVGSCSDD-----GSVVINSLFTDE--- 126 (724)
Q Consensus 62 ~~~~~la~g~-~d-----g~I~i~d~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~~~D-----g~v~iwd~~~~~--- 126 (724)
.++.++++|+ .+ ..+.+||.....-..+..- .......+...++..++.|+.+ ..+.+||..++.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 4556777777 33 3678888855543332211 1111111122356777777755 358899988766
Q ss_pred eEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecCCC-----eEEEEecccCCccceEe---ccCCCCeEEEEEeCCEEE
Q 004914 127 KMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLAG-----HLYLNSKKWLGYRDQVL---HSGEGPVHVVKWRTSLIA 195 (724)
Q Consensus 127 ~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg-----~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~~~~la 195 (724)
...+ ...+.-.+++.. + +..++.|+.++ .+.+++.. ......+ ......-.++.+.+.+++
T Consensus 93 W~~~~~~p~~r~~~~~~~~-~-----~~lyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL-G-----DMIYVSGGFDGSRRHTSMERYDPN--IDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE-T-----TEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred eEECCCCCCCccceeEEEE-C-----CEEEEEcccCCCcccceEEEEcCC--CCeEEECCCCCCCcccceEEEECCEEEE
Confidence 4433 222211222222 3 47778877544 35555532 1121212 112222223334466655
Q ss_pred EE-cC-----CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eC-----CeEEEEEEeeC
Q 004914 196 WA-ND-----AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG-----TYIKIASIKTN 256 (724)
Q Consensus 196 ~~-~d-----~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d-----~~i~vw~~~~~ 256 (724)
.+ .+ ..+.+||..+.+-...-..+. + .....+...++.++++| .+ +.+.+||+.++
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~---r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--K---RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS--C---CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc--c---cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 54 22 458899998776544311111 1 11222333466777777 32 35777776543
No 351
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=87.42 E-value=3.4 Score=38.68 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
-..+++.|+|++|+...+.... ............+..++..|+|++|...+.+++...
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3568899999999988765321 111123455566777889999999999888877643
No 352
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=87.41 E-value=25 Score=35.09 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCe-eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC--CceEEEeCCC--
Q 004914 60 VAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-- 134 (724)
Q Consensus 60 ~s~~~~~la~g~~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-- 134 (724)
++|..+.||.-. ..++.+||+..+. ++.+.- ...|.--.|-.+.. |+-.+ +..|..|++.+ .....+..|.
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L 149 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL 149 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGG
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhc
Confidence 788888888776 6889999996654 455443 34676667765443 44443 35799999975 3334444432
Q ss_pred ---CeeEEEeCCCCCCCCCCEEEEecC-------CCeEEEEecccCCccceEeccCCCCeEEEEEeC-----CEEEEEc-
Q 004914 135 ---PMKAISLDPDYTRKMSRRFVAGGL-------AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-----SLIAWAN- 198 (724)
Q Consensus 135 ---~v~~v~~~p~~~~~~~~~l~~g~~-------dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-----~~la~~~- 198 (724)
.|..-..+++ .++++..+- .|.+.+|+.. ....+.+.+|.+.-..+...| .+++.+.
T Consensus 150 ~~~QIInY~~d~~-----~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 150 AGCQIINYRTDAK-----QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp TTCEEEEEEECTT-----SCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ccceEEEEEECCC-----CCEEEEEeEeccCCccceeEEEEeec--ccccceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 6667777777 677665432 3567777664 445556666644333332222 2444432
Q ss_pred ---CCcEEEEEcC
Q 004914 199 ---DAGVKVYDAA 208 (724)
Q Consensus 199 ---d~~i~i~d~~ 208 (724)
.+.++|.++.
T Consensus 223 ~~~g~kLhIiEi~ 235 (365)
T 2xzh_A 223 GQAGGKLHIIEVG 235 (365)
T ss_dssp ETTEEEEEEEECS
T ss_pred cCCCcEEEEEEcC
Confidence 1467777764
No 353
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.37 E-value=5.3 Score=39.97 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCeEEEEecC----CCeeEEEc--CC-----------ccceeEEEEcCCCCEEEEEeCC-CCEEEEeccCCceEEEe---
Q 004914 73 AGTVHILDFL----GNQVKEFP--AH-----------TAAVNDLSFDVDGEYVGSCSDD-GSVVINSLFTDEKMKFD--- 131 (724)
Q Consensus 73 dg~I~i~d~~----~~~~~~~~--~h-----------~~~V~~l~~s~~g~~l~s~~~D-g~v~iwd~~~~~~~~~~--- 131 (724)
+..+..+|+. ++.+.... .. .....+++.+++|+..++++.. +.|...+........+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 5779999987 55543332 11 1247899999999999998888 88887777765443321
Q ss_pred ---CCC-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecc
Q 004914 132 ---YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (724)
Q Consensus 132 ---~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (724)
... ..+.++++|+ +..+++...+|.+.-++..
T Consensus 179 ~~~~~~~G~nGIv~~pd-----g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPH-----SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCSSSCCSCSEEEEETT-----TTEEEEESSSSSEEEEECS
T ss_pred CCcccccCcceEEEeCC-----CCEEEEEcCCCeEEEEcCC
Confidence 112 4789999999 7777777669999888765
No 354
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=87.16 E-value=6.2 Score=37.70 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=41.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC--C-chhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG--R-SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~--~-~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+++.|+|++|+...+.... + ......+....+.-++..|+|++|...+.+.+..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 568899999999999876432 1 1122456666777788999999999988887764
No 355
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=86.88 E-value=28 Score=35.18 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCC-eeEEEc---CCccceeEEEEcCC----CCEEEEEeC---C----CCEEEEe
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGN-QVKEFP---AHTAAVNDLSFDVD----GEYVGSCSD---D----GSVVINS 121 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~-~~~~~~---~h~~~V~~l~~s~~----g~~l~s~~~---D----g~v~iwd 121 (724)
-.++.++|+++ ++..+|.|++++.+|. .+..+. ........|+++|+ +...++-+. + ..|..|+
T Consensus 33 ~ia~~pdG~l~-V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 33 SIAPLGGGRYL-VTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEEETTEEE-EEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEEcCCCeEE-EEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 34678888755 5566699999986664 122111 12346789999997 444444432 3 5677777
Q ss_pred ccCC--ce------EE-EeCCC--CeeEEEeCCCCCCCCCCEEEEec
Q 004914 122 LFTD--EK------MK-FDYHR--PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 122 ~~~~--~~------~~-~~~~~--~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
...+ .. .. +.... ....++|.|+ +.++++.+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD-----G~Lyvt~G 153 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD-----GMLYITTG 153 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT-----SCEEEECC
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC-----CcEEEEEC
Confidence 6543 11 11 22111 4567999999 67666643
No 356
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.55 E-value=25 Score=34.32 Aligned_cols=177 Identities=12% Similarity=0.056 Sum_probs=87.9
Q ss_pred CCEEEEEeCC--CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCC----CCEEEEeccCCceEEEe---
Q 004914 64 ERMIALGTHA--GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFTDEKMKFD--- 131 (724)
Q Consensus 64 ~~~la~g~~d--g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~~~~~~~~--- 131 (724)
+.++++|+.+ ..+.+||.....-..+.. .......+. -++..++.|+.+ ..+.++|..++....+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 4466677653 578888885544322211 111112222 356677777755 56788888876654432
Q ss_pred CCC-CeeEEEeCCCCCCCCCCEEEEecCC------CeEEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEE-c--
Q 004914 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLA------GHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWA-N-- 198 (724)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~d------g~v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~-~-- 198 (724)
..+ ...++.+ + +..++.|+.+ ..+.+|+.. ......+.. ....-..+...+.+.+.+ .
T Consensus 90 ~~r~~~~~~~~--~-----~~iyv~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 90 TPRDSLAACAA--E-----GKIYTSGGSEVGNSALYLFECYDTR--TESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLG 160 (306)
T ss_dssp SCCBSCEEEEE--T-----TEEEEECCBBTTBSCCCCEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEEEEECCEES
T ss_pred ccccceeEEEE--C-----CEEEEECCCCCCCcEeeeEEEEeCC--CCceEeCCCCcCCcceeEEEEECCEEEEECCCCC
Confidence 222 2222222 3 4677887765 235566543 111222211 122222333446655544 2
Q ss_pred -------CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eC-----CeEEEEEEeeC
Q 004914 199 -------DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG-----TYIKIASIKTN 256 (724)
Q Consensus 199 -------d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d-----~~i~vw~~~~~ 256 (724)
-..+.+||..+.+-...-..+. ......+...++.+++.| .+ +.+.+||+.++
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-----ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-----hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 2448899998875443311111 111222333466777776 32 34677776554
No 357
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=86.24 E-value=1.5 Score=49.66 Aligned_cols=56 Identities=21% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..+.++|+|++|+...++... .++ ........+.-+...|+|++|.+.+.+.+..+
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457889999999999775432 111 12344455666778999999999888777643
No 358
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.12 E-value=31 Score=34.92 Aligned_cols=153 Identities=13% Similarity=-0.028 Sum_probs=81.6
Q ss_pred ceeEEEEcCCCCEEEEEe------------CCCCEEEEeccC--CceE--EEeC-----CC-CeeEEEeCCCCCCCCCCE
Q 004914 95 AVNDLSFDVDGEYVGSCS------------DDGSVVINSLFT--DEKM--KFDY-----HR-PMKAISLDPDYTRKMSRR 152 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~------------~Dg~v~iwd~~~--~~~~--~~~~-----~~-~v~~v~~~p~~~~~~~~~ 152 (724)
...++.+.|+|..+++++ .+|.|.++|..+ .+.. .+.. .. ....+.+.++ .....+.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d-~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID-DDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC-TTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC-CCCcEEE
Confidence 446677788876666652 689999999874 3333 2332 12 6677777553 1111235
Q ss_pred EEEecC--CCeEEEEecccCCccceEecc---C-CCCeEEEEEe--CCEEEEEc----C------------CcEEEEEcC
Q 004914 153 FVAGGL--AGHLYLNSKKWLGYRDQVLHS---G-EGPVHVVKWR--TSLIAWAN----D------------AGVKVYDAA 208 (724)
Q Consensus 153 l~~g~~--dg~v~l~~~~~~~~~~~~l~~---~-~~~V~~l~~~--~~~la~~~----d------------~~i~i~d~~ 208 (724)
+++-.. ++.+.+|.....+.....+.. . -.....+.+. |.+.++.. | ..-++|.+.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 555443 456778766533333222222 1 1335566666 56655542 1 122344333
Q ss_pred CCceEEEecCCCCCCCCCCCCCceee-cCCCeEEEE--eCCeEEEEEEee
Q 004914 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG--WGTYIKIASIKT 255 (724)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g--~d~~i~vw~~~~ 255 (724)
.++....... -.....++| ++++.+.++ ..+.|+.|++..
T Consensus 210 ~~~~~~~~~~-------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 PNDVRVVAEG-------FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTCCEEEEEE-------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCeEEEeecC-------CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3322111100 113557888 577777777 677899999864
No 359
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.82 E-value=3.8 Score=40.21 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=28.9
Q ss_pred HHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 530 AIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
.++..+.........+-.++.+|...|++++|+..|.+.
T Consensus 207 ~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 207 QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 334444444455667888999999999999999988763
No 360
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=85.74 E-value=20 Score=36.32 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=40.1
Q ss_pred HHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++..|+|++|+...+.. +........+....+..++..|+|++|...+.+.+.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5678899999999987643 223333445677778888899999999987666543
No 361
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=85.44 E-value=5.8 Score=35.27 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=40.3
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
....+++.|+|++|+..++......-.-..+....+.-++..|++++|...+.+.+.
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 446788999999999998865531111134556667777889999999987665544
No 362
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=85.43 E-value=6.4 Score=43.55 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=79.0
Q ss_pred HHHhcCCHHHHHHHHHHcCCchhhHHH---HhcCChHHHHHHHHHHHccChhHHHHHhhhcCCCCChHHHHHHHhccccc
Q 004914 551 LYVIDGHYEKAFSLYADLMKPYIFDFI---ENHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDK 627 (724)
Q Consensus 551 ly~~~~~~~~al~~~~~~~~~~~~~~i---~~~~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~ 627 (724)
+....||||.|+.++-+....+|.-+. ..++++.. ...|+..++. ...++...+|-++-+.-..
T Consensus 303 vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~---------~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 303 TLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKI----DSSTRLTKKP---------KRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccC----CCcccccCCC---------cccccHHHHHHHHHHHhhc
Confidence 446689999999988766333332221 23444432 2222222211 1245666666665543211
Q ss_pred CCchhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhc----------------chhhhHHHhhhcC-------CCC-HHH
Q 004914 628 CDSRYFLHLYLHALFEVN-PHAGKDFHDMQVELYADY----------------DLKMLLPFLRSSQ-------HYT-LEK 682 (724)
Q Consensus 628 ~~~~~~l~~yL~~l~~~~-~~~~~~~~~~lv~Ly~~~----------------~~~~ll~fL~~~~-------~y~-~~~ 682 (724)
..+.....|+-.+-..+ +....-+|..+-+|-.+- .|.-+-+|..--. ... .+.
T Consensus 370 -td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~ 448 (661)
T 2qx5_A 370 -SDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ 448 (661)
T ss_dssp -TCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHH
Confidence 22443345665542222 111124566666665421 1222222221000 001 256
Q ss_pred HHHHHhcCCCchhHHHHHhccCChHHHHHHHHHHhCC
Q 004914 683 AYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGD 719 (724)
Q Consensus 683 al~~c~~~~~~~e~v~Ll~k~g~~~~Al~l~~~~l~d 719 (724)
|-+.|+..+.++..|.||-..|+++.|++|+-..|.+
T Consensus 449 aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~ 485 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSD 485 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999776643
No 363
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=85.41 E-value=28 Score=33.80 Aligned_cols=58 Identities=12% Similarity=-0.149 Sum_probs=39.8
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccc-hHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVER-KYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~Aa~~~~~~~~ 455 (724)
.....+.+.|+|++|+.+++........-..+....+..++..| ++++|.+.+.+.+.
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 119 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35577889999999999876532200011235555667778888 89999998777665
No 364
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.16 E-value=29 Score=33.77 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=87.2
Q ss_pred ecCCEEEEEeCC----CeEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCCC-----CEEEEeccCCceEE
Q 004914 62 VAERMIALGTHA----GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFTDEKMK 129 (724)
Q Consensus 62 ~~~~~la~g~~d----g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~~~~~~ 129 (724)
.++.++++|+.+ ..+..||.....-..+.. ....-..+. -++..++.|+.++ .+.+||..++.-..
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 345677777754 357788885554333311 111111122 2566777777553 57888888766544
Q ss_pred Ee---CCCCeeEEEeCCCCCCCCCCEEEEecCCCe-----EEEEecccCCccceEecc---CCCCeEEEEEeCCEEEEE-
Q 004914 130 FD---YHRPMKAISLDPDYTRKMSRRFVAGGLAGH-----LYLNSKKWLGYRDQVLHS---GEGPVHVVKWRTSLIAWA- 197 (724)
Q Consensus 130 ~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~-----v~l~~~~~~~~~~~~l~~---~~~~V~~l~~~~~~la~~- 197 (724)
+. ..+.-.+++.. + +..++.|+.++. +.+|+.. ......+.. .......+.+.+.+.+.+
T Consensus 92 ~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 163 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL-N-----GLLYAVGGFDGSTGLSSVEAYNIK--SNEWFHVAPMNTRRSSVGVGVVGGLLYAVGG 163 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T-----TEEEEEEEECSSCEEEEEEEEETT--TTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCCccccceEEEEE-C-----CEEEEEcCCCCCccCceEEEEeCC--CCeEeecCCCCCcccCceEEEECCEEEEEeC
Confidence 32 22212222222 3 467777775542 4444432 122222221 122222333446655554
Q ss_pred c-------CCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eC-----CeEEEEEEeeC
Q 004914 198 N-------DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG-----TYIKIASIKTN 256 (724)
Q Consensus 198 ~-------d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d-----~~i~vw~~~~~ 256 (724)
. -..+.+||..+.+-...-..+. + ....+++..++.+++.| .+ +.+.+||+.++
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMST--R---RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSS--C---CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCcc--c---cccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 2 2348899998776544311111 1 11222333466777777 33 34777776543
No 365
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=84.86 E-value=4.1 Score=38.98 Aligned_cols=75 Identities=11% Similarity=-0.156 Sum_probs=47.4
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc---ChhhHHHHHHHHhhcCCC
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG---SASAWERWVFHFAHLRQL 474 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~---~~~~we~~i~~F~~~~~l 474 (724)
...+...|+|++|+...+...........+....+..++..|+|++|...+.+.+.. +...|-.....+...++.
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence 356778999999999876542200011235555667778899999999988877753 233444444555555543
No 366
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=84.07 E-value=1.2 Score=41.77 Aligned_cols=53 Identities=13% Similarity=-0.049 Sum_probs=35.6
Q ss_pred HHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhcc-----------chHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVE-----------RKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~-----------~~~~~Aa~~~~~~~~~~ 457 (724)
..+.+.|+|++|+..++.. +........++ .-+... |++++|...+.+.+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS----EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH----HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 5578899999999987653 32333333344 344445 99999998877777643
No 367
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=83.43 E-value=82 Score=37.57 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=101.0
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEecCCCeeEEE--cCCccceeEEEEcCC------CCEEEEEeC-CCCEEEEeccCCc
Q 004914 56 AASCVAVAERMIALGTHAGTVHILDFLGNQVKEF--PAHTAAVNDLSFDVD------GEYVGSCSD-DGSVVINSLFTDE 126 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~--~~h~~~V~~l~~s~~------g~~l~s~~~-Dg~v~iwd~~~~~ 126 (724)
.|++.+.++..+++++ +|.+.++.++...+... ..-...|.|+++.|. +++++.|.. |++|+|+++.+-+
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 4666666677777775 67888887742222221 123457999999864 468889986 9999999998744
Q ss_pred eEE---EeCCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEeccc-CCcc--ceEeccCCCCeEEEEEe--C-CEEEEE
Q 004914 127 KMK---FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW-LGYR--DQVLHSGEGPVHVVKWR--T-SLIAWA 197 (724)
Q Consensus 127 ~~~---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~-~~~~--~~~l~~~~~~V~~l~~~--~-~~la~~ 197 (724)
... +.....+.++.+..- .+..++.+|-.||.+..+..+- .|.. .+...-+..|+.=..+. | .-+.+.
T Consensus 594 ~~~~~~L~~~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 594 LLHKEMLGGEIIPRSILMTTF---ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp EEEEEECCSSCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred eEEEEECCCCCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 332 221124455544321 0136788999999976664321 1211 11122234455444444 2 234444
Q ss_pred cCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeec---CCCeEEEEeCCeEEEEEEee
Q 004914 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 198 ~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~ 255 (724)
+++...+|.....-....+... . ......|+ -..-++...++.++|..+..
T Consensus 671 s~rp~liy~~~~~l~~s~l~~~--~-----v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~ 724 (1158)
T 3ei3_A 671 SDRPTVIYSSNHKLVFSNVNLK--E-----VNYMCPLNSDGYPDSLALANNSTLTIGTIDE 724 (1158)
T ss_dssp SSSCEEEEESSSSEEEEEBSSS--C-----CCEEEEECCSSSTTEEEEECSSCEEEEEECC
T ss_pred CCCCEEEEEcCCceEEeccChH--H-----hceEeccCcccCCCcEEEEcCCceEEEEecc
Confidence 5666666654422111111111 0 11112232 13345555677799998854
No 368
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.30 E-value=12 Score=36.73 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=83.8
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCccccc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPY 480 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~ 480 (724)
..+.+.|+|++|+..++. +... ++....+.-+...|++++|.+.+.+.+..++..-.
T Consensus 109 ~~~~~~g~~~~Al~~l~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~------------------ 165 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-GDSL----ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL------------------ 165 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-CCSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------
T ss_pred HHHHHCCCHHHHHHHHhC-CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH------------------
Confidence 567899999999999987 2222 34445566678899999999988887763322100
Q ss_pred CcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHH
Q 004914 481 MPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEK 560 (724)
Q Consensus 481 l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 560 (724)
......+..++... .++.+.+. ..+..+.........+..++.+|...|++++
T Consensus 166 ----------~~l~~a~~~l~~~~---~~~~eA~~--------------~~~~~l~~~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 166 ----------TQLATAWVSLAAGG---EKLQDAYY--------------IFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp ----------HHHHHHHHHHHHCT---THHHHHHH--------------HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------HHHHHHHHHHHhCc---hHHHHHHH--------------HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 00000111111110 11111111 1111111122344577778888899999999
Q ss_pred HHHHHHHc-----CCchhhHHH----HhcC-ChHHHHHHHHHHHccChhH
Q 004914 561 AFSLYADL-----MKPYIFDFI----ENHN-LHDAIREKVVQLMLLDCKR 600 (724)
Q Consensus 561 al~~~~~~-----~~~~~~~~i----~~~~-l~~~~~~~~~~L~~~~~~~ 600 (724)
|..++-+. .+++++..+ ...+ ..+.+..+...+++++|..
T Consensus 219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 98888773 123332211 2333 3345677777888888764
No 369
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=82.91 E-value=9.4 Score=35.77 Aligned_cols=47 Identities=11% Similarity=-0.076 Sum_probs=27.3
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+...|+|++|+...+.... ... .+.+...+++++|...+.+.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHc
Confidence 557788889999888764432 000 22344456666666665555543
No 370
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=82.82 E-value=87 Score=37.38 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=70.5
Q ss_pred EEEEeccCCceE-EEeCCC--CeeEEEeCCCCCCCCCCEEEEec----------CCCeEEEEecccCCccceEecc--CC
Q 004914 117 VVINSLFTDEKM-KFDYHR--PMKAISLDPDYTRKMSRRFVAGG----------LAGHLYLNSKKWLGYRDQVLHS--GE 181 (724)
Q Consensus 117 v~iwd~~~~~~~-~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~----------~dg~v~l~~~~~~~~~~~~l~~--~~ 181 (724)
|++.|..+.+.. .+.... .+.|++.-. +......++++|+ ..|.+.+++.. +.+...++. .+
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~-~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~--~~kL~lv~~~~v~ 885 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCK-LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS--DGKLQTVAEKEVK 885 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEEC-CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE--TTEEEEEEEEEES
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEE-EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE--CCEEEEEEEEEcC
Confidence 555565554332 333332 555554322 1111247888886 35778888764 334444433 47
Q ss_pred CCeEEEEEeCCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCCeEEEEEEee
Q 004914 182 GPVHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKT 255 (724)
Q Consensus 182 ~~V~~l~~~~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~ 255 (724)
++|++++--+..++++-...+++|++...+.+. ..... .+ ......+.. .+..+++| --..|.++..+.
T Consensus 886 g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~--~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 886 GAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNH-YN--NIMALYLKT-KGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp SCEEEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEE-CC--CSCEEEEEE-ETTEEEEEESSBCEEEEEEET
T ss_pred CcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeec-cc--cEEEEEEec-cCCEEEEEEhhheEEEEEEEc
Confidence 889998755335555666889999998665433 11100 00 001112222 46678888 556677776654
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.64 E-value=36 Score=33.09 Aligned_cols=177 Identities=11% Similarity=-0.017 Sum_probs=93.5
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC--CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceE-EEeC
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKM-KFDY 132 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~-~~~~ 132 (724)
|..++......+.-+ +|.++.|-.+ ++.-.. ......|..++.... +.+... ||.|..|-... +++- ....
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCCccc
Confidence 456666655444446 8999999763 322111 112236777776543 333334 89999997665 3321 1111
Q ss_pred CCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEeC-CEEEEEcCCcEEEEEcCCCc
Q 004914 133 HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWANDAGVKVYDAANDQ 211 (724)
Q Consensus 133 ~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~~-~~la~~~d~~i~i~d~~~~~ 211 (724)
...|..|+.... ..++.. +|.+..|-....+.... .......|..++... ..++.. |+.+..|-.....
T Consensus 101 ~~~v~~ia~G~~------hs~al~--~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 101 RSGVDAIAAGAW------ASYALK--DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp SSSEEEEEEETT------EEEEEE--TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred CCCeEEEECcCC------EEEEEe--CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCC
Confidence 236777776655 334443 89999985543332211 111234576666553 333443 7888888765422
Q ss_pred eEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEee
Q 004914 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~ 255 (724)
.+. .|.. ....+..++......++. .++.|+.|-...
T Consensus 171 qlg---~p~~---~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 171 QTT---VPAE---AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp TTS---CCGG---GGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred CCC---Ccee---cCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence 211 1100 001123333344556666 899999996544
No 372
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=82.51 E-value=30 Score=34.02 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=70.9
Q ss_pred EEEEecCCEEEEEeC----CC-------eEEEEecCCCeeEEEcC---CccceeEEEEcCCCCEEEEEeCC-------CC
Q 004914 58 SCVAVAERMIALGTH----AG-------TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD-------GS 116 (724)
Q Consensus 58 ~~~s~~~~~la~g~~----dg-------~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D-------g~ 116 (724)
++...++.++++|+. ++ .+..||.....-..+.. .........+ ++..++.|+.+ ..
T Consensus 51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccce
Confidence 345567888888873 12 26778875544333211 1111111222 56777777754 24
Q ss_pred EEEEeccCCceEEEeC---CCCeeEEEeCCCCCCCCCCEEEEecCC------CeEEEEecccCCccceEecc---CCCCe
Q 004914 117 VVINSLFTDEKMKFDY---HRPMKAISLDPDYTRKMSRRFVAGGLA------GHLYLNSKKWLGYRDQVLHS---GEGPV 184 (724)
Q Consensus 117 v~iwd~~~~~~~~~~~---~~~v~~v~~~p~~~~~~~~~l~~g~~d------g~v~l~~~~~~~~~~~~l~~---~~~~V 184 (724)
+.++|..+..-..+.. .+.-.+++. .+ +..++.|+.+ ..+.+++.. ......+.. .....
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~-----~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~~~ 200 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN-----GMIYCLGGKTDDKKCTNRVFIYNPK--KGDWKDLAPMKTPRSMF 200 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE-ET-----TEEEEECCEESSSCBCCCEEEEETT--TTEEEEECCCSSCCBSC
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE-EC-----CEEEEEcCCCCCCCccceEEEEcCC--CCEEEECCCCCCCcccc
Confidence 6778887765444321 121122222 23 4677777642 236666543 122222211 12222
Q ss_pred EEEEEeCCEEEEE-c-C----CcEEEEEcCCCceEE
Q 004914 185 HVVKWRTSLIAWA-N-D----AGVKVYDAANDQRIT 214 (724)
Q Consensus 185 ~~l~~~~~~la~~-~-d----~~i~i~d~~~~~~~~ 214 (724)
.++.+.+.+++.+ . + ..+.+||..+.+-..
T Consensus 201 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 201 GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred eEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 3334446655544 2 2 246788988775443
No 373
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=82.45 E-value=2.5 Score=39.93 Aligned_cols=55 Identities=7% Similarity=-0.121 Sum_probs=39.1
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
-..++..|+|++|+...+...... .-..+....+.-++..|+|++|...+.+.+.
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356788999999998876432211 1234666677778889999999988777665
No 374
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=82.42 E-value=1.3 Score=39.55 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=30.4
Q ss_pred HHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 403 LLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
++..|+|++|+..++........-..+....+..++..|+|++|...+.+.+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 72 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678888888776543210001124556677778889999999987766655
No 375
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.40 E-value=33 Score=38.46 Aligned_cols=145 Identities=9% Similarity=0.041 Sum_probs=76.4
Q ss_pred EEecCCEEEEEeCC----CeEEEEecCCCeeEEEc-C------Cc--cceeEEEEcCCCCEEEEEeCCC------CEEEE
Q 004914 60 VAVAERMIALGTHA----GTVHILDFLGNQVKEFP-A------HT--AAVNDLSFDVDGEYVGSCSDDG------SVVIN 120 (724)
Q Consensus 60 ~s~~~~~la~g~~d----g~I~i~d~~~~~~~~~~-~------h~--~~V~~l~~s~~g~~l~s~~~Dg------~v~iw 120 (724)
...++.++++|+.+ ..+.+||.....-..+. . .. .....+.+..++..++.||.++ .+.+|
T Consensus 394 ~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 394 DVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp EECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred EEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 33677888888754 46788888544332322 1 11 1122223322677777877543 47788
Q ss_pred eccCCceEEE---eCCCCeeEEEeCCCCCCCCCCEEEEecCCC--eEEEEecccCCccceEe------ccCCCCeEEEEE
Q 004914 121 SLFTDEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLAG--HLYLNSKKWLGYRDQVL------HSGEGPVHVVKW 189 (724)
Q Consensus 121 d~~~~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg--~v~l~~~~~~~~~~~~l------~~~~~~V~~l~~ 189 (724)
|..+..-..+ ...+.-.+.+...+ +..++.|+.++ .+.+|+.. ......+ ........++.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~-----~~iyv~GG~~~~~~v~~yd~~--t~~W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPD-----GNVLILGGVTEGPAMLLYNVT--EEIFKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTT-----SCEEEECCBCSSCSEEEEETT--TTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcC-----CEEEEECCCCCCCCEEEEECC--CCceEEccCCCCCCCcccceeEEEE
Confidence 8877654433 22222223333224 58888888665 46666543 1111111 112222234555
Q ss_pred e---CCEEEEE-c--C-----CcEEEEEcCCCc
Q 004914 190 R---TSLIAWA-N--D-----AGVKVYDAANDQ 211 (724)
Q Consensus 190 ~---~~~la~~-~--d-----~~i~i~d~~~~~ 211 (724)
. +.+++.| . + +.+.+||+.+..
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 6 4455554 3 2 248889998776
No 376
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=81.87 E-value=24 Score=34.25 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++..|+|++|+...+.. +........+....+..++..|+|++|...+.+.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5578899999999987653 223333346677778888899999999987666544
No 377
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=81.44 E-value=48 Score=33.44 Aligned_cols=55 Identities=5% Similarity=-0.069 Sum_probs=37.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+..+|+|++|+...+.... .......+....+..++..|+|++|...+.+.+.
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346678999999999876532 1222345666667778889999999886655443
No 378
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=80.57 E-value=81 Score=35.52 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=82.8
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEEc-----CCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFP-----AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD 131 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~~-----~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~ 131 (724)
|.++..+...|-+|+.+ -+..++........+. .....|.++..+.+|...+. +.+| +..++..++....+.
T Consensus 105 i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~ 181 (758)
T 3ott_A 105 VRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TYNG-LCRYIPSNGKFEGIP 181 (758)
T ss_dssp EEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEEEC
T ss_pred EEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eCCC-HhhCccCCCceEEec
Confidence 55544444566677776 4777887554444441 12346888888888886654 3444 777887766554332
Q ss_pred CC------C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEecc-CCCCeEEEEEe--CCEEEEEcCCc
Q 004914 132 YH------R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWR--TSLIAWANDAG 201 (724)
Q Consensus 132 ~~------~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~-~~~~V~~l~~~--~~~la~~~d~~ 201 (724)
.. . .|.++..+++ +..+-.|+.. -+..++.. ......+.. ....|.++... |.+.+++ +++
T Consensus 182 ~~~~~~~~~~~i~~i~~d~~-----~~~lWigt~~-Gl~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G 252 (758)
T 3ott_A 182 LPVHSSQSNLFVNSLLEDTT-----RQCVWIGTEG-YLFQYFPS--TGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNG 252 (758)
T ss_dssp CCCCTTCSSCCEEEEEEETT-----TTEEEEEEEE-EEEEEETT--TTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTE
T ss_pred CCCccccccceeEEEEEECC-----CCEEEEEECC-CCeEEcCC--CCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCc
Confidence 11 1 4788877765 4555555543 45555543 111111111 12346777665 5665555 568
Q ss_pred EEEEEcCCCce
Q 004914 202 VKVYDAANDQR 212 (724)
Q Consensus 202 i~i~d~~~~~~ 212 (724)
+.+++..+++.
T Consensus 253 l~~~~~~~~~~ 263 (758)
T 3ott_A 253 LYVYHNDTTPL 263 (758)
T ss_dssp EEEECCTTSCC
T ss_pred eeEEecCCCcE
Confidence 89999876654
No 379
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=80.52 E-value=19 Score=32.53 Aligned_cols=52 Identities=13% Similarity=0.019 Sum_probs=40.1
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+....+ -..+....+..++..|+|++|...+.+.+.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567899999999999877543 124666677778889999999997777665
No 380
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.44 E-value=9.9 Score=35.22 Aligned_cols=54 Identities=13% Similarity=-0.083 Sum_probs=38.0
Q ss_pred HHHHhcccHHHHHHHHHhcCC--C-chhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG--R-SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~--~-~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+++.|+|++|+...+.... + .+. .+....+..++..|+|++|...+.+.+..
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 568899999999998764322 1 111 24444677788899999999987777653
No 381
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=80.34 E-value=5.9 Score=42.23 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
.....+..++.+|...|+|++|+.+|-+.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55678888999999999999999998773
No 382
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=80.15 E-value=6.8 Score=38.12 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=40.2
Q ss_pred HHHHHhcccHHHHHHHHHhcCC--------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG--------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~--------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+...|+|++|+.+++.... .......+....+..++..|+|++|...+.+.+.
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3667889999999988765432 1223445666777788889999999987666554
No 383
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=79.66 E-value=49 Score=34.28 Aligned_cols=100 Identities=9% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCCCEEEEEeCCCCEEEEeccCCc-eEEEeCC----C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc---
Q 004914 103 VDGEYVGSCSDDGSVVINSLFTDE-KMKFDYH----R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR--- 173 (724)
Q Consensus 103 ~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~----~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~--- 173 (724)
.+|+.++.+- ++.||.-++..+. -..+... - .|..+..+|+ |+++|..+.. .|.+...-|....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-----G~lLAl~g~~-~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-----GDLLCLFNDN-EIFVMEVPWGYSNVED 102 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-----SSEEEEECSS-EEEEEECCTTCSCCCC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-----CCEEEEecCC-eEEEEEecCccccCcc
Confidence 3444444433 2456655555322 2223222 2 5788999999 8888887654 6666665543211
Q ss_pred ------c--eEecc------CCCCeEEEEEeC------CEEEEEcCCcEEEEEcCC
Q 004914 174 ------D--QVLHS------GEGPVHVVKWRT------SLIAWANDAGVKVYDAAN 209 (724)
Q Consensus 174 ------~--~~l~~------~~~~V~~l~~~~------~~la~~~d~~i~i~d~~~ 209 (724)
. +.+.- ...+|..+.|++ .+++..+|+.|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1 12221 257899999992 456666899999999985
No 384
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=79.64 E-value=7.7 Score=36.96 Aligned_cols=58 Identities=10% Similarity=-0.057 Sum_probs=41.8
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.....+...|+|++|+..++.... ............+..+...|+|++|...+.+.+.
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 344678899999999999875432 2222334456677778889999999998777665
No 385
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=79.61 E-value=55 Score=33.04 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=73.6
Q ss_pred CCCeEEEEecCC--CeeEE--EcC-----CccceeEEEEcC--CCC-EEEEE-eC--CCCEEEEeccCC-ce-E---EEe
Q 004914 72 HAGTVHILDFLG--NQVKE--FPA-----HTAAVNDLSFDV--DGE-YVGSC-SD--DGSVVINSLFTD-EK-M---KFD 131 (724)
Q Consensus 72 ~dg~I~i~d~~~--~~~~~--~~~-----h~~~V~~l~~s~--~g~-~l~s~-~~--Dg~v~iwd~~~~-~~-~---~~~ 131 (724)
.+|.|.++|.+. ..... +.+ ..-....+++.+ +|+ +|..+ .. +.+|-+|++..+ .. . .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999852 22222 222 223566777755 454 34444 22 467888877652 22 1 334
Q ss_pred CCC--CeeEEEeCCCCCCCCCCEEEEecC-----------------CCeEEEEecccCCccceEeccCCCCeEEEEEe--
Q 004914 132 YHR--PMKAISLDPDYTRKMSRRFVAGGL-----------------AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-- 190 (724)
Q Consensus 132 ~~~--~v~~v~~~p~~~~~~~~~l~~g~~-----------------dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-- 190 (724)
... ..+.+++.++ |+.+++... .|.+..++. .....+...-..-++++|+
T Consensus 161 g~~~~~pND~~v~~~-----G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~----~~~~~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 161 HKLLPSVNDIVAVGP-----EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP----NDVRVVAEGFDFANGINISPD 231 (355)
T ss_dssp CTTCSSEEEEEEEET-----TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----TCCEEEEEEESSEEEEEECTT
T ss_pred cCCCCCCceEEEeCC-----CCEEecCCcEeCCcccccchhhccCCccEEEEEEC----CeEEEeecCCcccCcceECCC
Confidence 433 7889999998 666665431 233443332 2233333333456789999
Q ss_pred CCEEEEE--cCCcEEEEEcCC
Q 004914 191 TSLIAWA--NDAGVKVYDAAN 209 (724)
Q Consensus 191 ~~~la~~--~d~~i~i~d~~~ 209 (724)
++.+.++ ..+.|..|++..
T Consensus 232 g~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECT
T ss_pred CCEEEEEeCCCCeEEEEEECC
Confidence 5666665 367899999863
No 386
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=79.57 E-value=55 Score=32.97 Aligned_cols=53 Identities=6% Similarity=-0.092 Sum_probs=35.7
Q ss_pred HHhcccHHHHHHHHHhcCC------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 403 LLEHGWHEKALAAVEAGQG------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
+..+|+|++|+...+.... .......+....+..++..|+++.|...+.+.+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4678999999998775432 1122345556666777888999999886555443
No 387
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=79.38 E-value=48 Score=32.19 Aligned_cols=177 Identities=11% Similarity=0.018 Sum_probs=94.4
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEecC--CCeeEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccC-CceE-EEe
Q 004914 56 AASCVAVAERMIALGTHAGTVHILDFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKM-KFD 131 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~~dg~I~i~d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~-~~~ 131 (724)
.|..++......+.-+ +|.|+.|-.+ ++.-.. ..-...|..++.... +.+... ||.|..|-... +++- ...
T Consensus 64 ~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~ 138 (282)
T 3qhy_B 64 GVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAE 138 (282)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGG
T ss_pred CEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCcc
Confidence 3556666555433335 8999999763 322100 011236777766543 444445 99999997665 3321 111
Q ss_pred CCCCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEeccCCCCeEEEEEe-CCEEEEEcCCcEEEEEcCCC
Q 004914 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWANDAGVKVYDAAND 210 (724)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~~~~~~V~~l~~~-~~~la~~~d~~i~i~d~~~~ 210 (724)
....|..++.... ..++.. +|.+..|-....+.... .......|..++.. ...++. .|+.+..|-....
T Consensus 139 ~~~~i~~i~~G~~------~~~~l~--~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 139 AQSGVTALDGGVY------TALAVK--NGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp GGSSEEEEEECSS------EEEEEE--TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTT
T ss_pred CCCCeEEEEcccC------EEEEEE--CCEEEEecCCCCCCCCC-ceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCC
Confidence 2226777776554 334433 68999885543332211 11113457777655 344555 7899999976543
Q ss_pred ceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEe
Q 004914 211 QRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIK 254 (724)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~ 254 (724)
..+. .+.. ....+..++-.....++.. ++.|+.|--.
T Consensus 209 gqlg---~p~~---~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 209 KQTT---VPTE---ALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp STTC---CCGG---GGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred CCCC---CCcc---cCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 2221 1100 0012334444455667777 9999999443
No 388
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.31 E-value=40 Score=38.80 Aligned_cols=38 Identities=5% Similarity=0.062 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHcCCch-hhHHHHh
Q 004914 542 DALKEALAELYVIDG--HYEKAFSLYADLMKPY-IFDFIEN 579 (724)
Q Consensus 542 ~~~~~~l~~ly~~~~--~~~~al~~~~~~~~~~-~~~~i~~ 579 (724)
..+.+.+..+|.+.. +|-.|++|++++.+++ +-+.+.+
T Consensus 215 ~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~ 255 (963)
T 4ady_A 215 SSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKK 255 (963)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 347778888888887 9999999999999866 4444444
No 389
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=79.17 E-value=4.9 Score=37.64 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCce-------EEEeCCC--CeeEEEeCCCCCCCCCCEEEEecCCCeEEE
Q 004914 94 AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-------MKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-------~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (724)
..+.+++|+|+|.+.+. .+|.+.-.+..+... ..+.... ...++.|+|+ +.+.++ .||.|.-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~-----G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN-----GYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT-----SCEEEE--ETTEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC-----CCEEEe--CCCEEEE
Confidence 37789999999986666 677776666644221 1221111 3588999999 666666 5588876
Q ss_pred Eecc------cCCccceEeccCCCCeEEEEEe--CCEEEEEcCCcE
Q 004914 165 NSKK------WLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGV 202 (724)
Q Consensus 165 ~~~~------~~~~~~~~l~~~~~~V~~l~~~--~~~la~~~d~~i 202 (724)
++.- |.+....+-...=..+..|.+. |.+.+.. |+.+
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 6431 1111111111122456677776 5565555 6653
No 390
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=79.15 E-value=11 Score=37.22 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHc-C----Cch----h----hHHHHhcCChHHHHHHHHHHHccChh
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYADL-M----KPY----I----FDFIENHNLHDAIREKVVQLMLLDCK 599 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~~-~----~~~----~----~~~i~~~~l~~~~~~~~~~L~~~~~~ 599 (724)
....+...++.++...|++++|..++-+. . .++ + ..+..+++..+.+.......++..|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 34557777788888889999988887763 1 221 2 22334556666666666666666654
No 391
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.10 E-value=65 Score=33.55 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=95.3
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEecCC--CeeEEEcCCc----cceeEEEEcCCCCEEEEEe-------CCCCEEEEec
Q 004914 57 ASCVAV-AERMIALGTHAGTVHILDFLG--NQVKEFPAHT----AAVNDLSFDVDGEYVGSCS-------DDGSVVINSL 122 (724)
Q Consensus 57 i~~~s~-~~~~la~g~~dg~I~i~d~~~--~~~~~~~~h~----~~V~~l~~s~~g~~l~s~~-------~Dg~v~iwd~ 122 (724)
|.-|.+ +.+.|+.-+. ..|+-|+..| .+.+.|.-|. ..|.....+++.++++-.| ..|.+.+|+.
T Consensus 108 VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp CCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred ceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 444544 4566666554 4799999954 4566666553 4777888899999876443 2467889999
Q ss_pred cCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC---CCeEEEEecccC--Cc-----c-ceEeccC---CCCeEEE
Q 004914 123 FTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWL--GY-----R-DQVLHSG---EGPVHVV 187 (724)
Q Consensus 123 ~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~--~~-----~-~~~l~~~---~~~V~~l 187 (724)
+.+....+.+|. ....+.+..+.. ....|+.+.. .+.+.+-+.+-. +. + ..+.... .+--.++
T Consensus 187 er~~sQ~ieGhaa~F~~~~~~g~~~--~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 187 DRKVSQPIEGHAASFAQFKMEGNAE--ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp TTCCEEEECCSEEEEEEEECTTCSS--EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred cccccchheeeeeeeEEEecCCCCC--CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 888878888877 554555443311 1234554443 267777665422 11 1 1111111 2233456
Q ss_pred EEe---CCEEEEEcCCcEEEEEcCCCceEEE
Q 004914 188 KWR---TSLIAWANDAGVKVYDAANDQRITF 215 (724)
Q Consensus 188 ~~~---~~~la~~~d~~i~i~d~~~~~~~~~ 215 (724)
..+ |-+...+.-|.+.+||+.++.++..
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EecccCCEEEEEecCceEEEEecccceeeee
Confidence 666 3444555678899999999999875
No 392
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=79.06 E-value=55 Score=32.68 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=108.9
Q ss_pred CceEEEEe-cCCEEEEEeCCCeEEEEecCC--CeeEEEcCCc----cceeEEEEcCCCCEEEEEe-------CCCCEEEE
Q 004914 55 DAASCVAV-AERMIALGTHAGTVHILDFLG--NQVKEFPAHT----AAVNDLSFDVDGEYVGSCS-------DDGSVVIN 120 (724)
Q Consensus 55 ~~i~~~s~-~~~~la~g~~dg~I~i~d~~~--~~~~~~~~h~----~~V~~l~~s~~g~~l~s~~-------~Dg~v~iw 120 (724)
+.+.-|.+ +.+.|+.-+. ..|+-|+..+ .+.+.|..|. ..|.....+++.++++-.| ..|.+.+|
T Consensus 107 e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 107 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp SCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEE
Confidence 44555655 5566666654 4699999954 4466665553 4777788899999866543 23677899
Q ss_pred eccCCceEEEeCCC-CeeEEEeCCCCCCCCCCEEEEecC---CCeEEEEecccC--Ccc------ceEeccC---CCCeE
Q 004914 121 SLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWL--GYR------DQVLHSG---EGPVH 185 (724)
Q Consensus 121 d~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~--~~~------~~~l~~~---~~~V~ 185 (724)
+.+.+....+.+|. ....+.+..+. .....|+.+.. .+.+.+-+.+-. +.. ...+... .+--.
T Consensus 186 S~er~~sQ~ieGhaa~F~~~~~~g~~--~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 186 SVDRKVSQPIEGHAASFAQFKMEGNA--EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp ETTTTEEEEECCSEEEEEEECCTTCS--SCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred eecccccceeeeeeeeeEEEecCCCC--CCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 99887777787776 44344333221 11234444433 256777665322 111 1111111 23334
Q ss_pred EEEEe---CCEEEEEcCCcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEEeCCeEEEEEEee
Q 004914 186 VVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKT 255 (724)
Q Consensus 186 ~l~~~---~~~la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~ 255 (724)
++..+ |-+...+.-|-+.+||+.++.++..-.-.... .++.+..-..+..+.+...|.|.-..++.
T Consensus 264 amqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~----iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 264 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET----IFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCc----eEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 66666 34444556789999999999998753322211 11221111344555555666655554543
No 393
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=78.62 E-value=12 Score=38.18 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=37.7
Q ss_pred HHHHhcccHHHHHHHHHhcC------CCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQ------GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~------~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+... ........+....+.-++..|+|++|...+.+.+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56899999999887754321 22333445555566666778999999888777665
No 394
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=78.33 E-value=59 Score=32.66 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred CeEEEEecCCCe-------eEEEc---CCccceeEEEEcCCCCEEEEEeCC-------------CCEEEEeccCC-----
Q 004914 74 GTVHILDFLGNQ-------VKEFP---AHTAAVNDLSFDVDGEYVGSCSDD-------------GSVVINSLFTD----- 125 (724)
Q Consensus 74 g~I~i~d~~~~~-------~~~~~---~h~~~V~~l~~s~~g~~l~s~~~D-------------g~v~iwd~~~~----- 125 (724)
+.|..++.++.. +..+. ........+.|+|+|.+.++.+.. |.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 678888875431 11232 111123679999999877765432 45555555431
Q ss_pred --------ce-EEEeCCCCeeEEEeCCCCCCCCCCEEEEe
Q 004914 126 --------EK-MKFDYHRPMKAISLDPDYTRKMSRRFVAG 156 (724)
Q Consensus 126 --------~~-~~~~~~~~v~~v~~~p~~~~~~~~~l~~g 156 (724)
.. ....+++....++|+|+ ++..+++-
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~----~g~l~v~d 220 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPK----TGELFSSE 220 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTT----TCCEEEEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECC----CCCEEEEE
Confidence 11 11233445678999994 15555553
No 395
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=78.22 E-value=10 Score=34.61 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=38.7
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcc-chHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVE-RKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~Aa~~~~~~~~ 455 (724)
...+...|+|++|+...+...........+....+..++.. |++++|...+.+.+.
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 35678899999999987654320001123556677778889 999999987666555
No 396
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=78.13 E-value=20 Score=29.65 Aligned_cols=33 Identities=21% Similarity=0.026 Sum_probs=24.9
Q ss_pred hccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
+.........+-.++.+|...|++++|+.++-+
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333344455677788899999999999998865
No 397
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=77.73 E-value=73 Score=33.40 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=54.3
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecC-CCee--EEEcC------CccceeEEEEcCC----CCEEEEEeC----------
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQV--KEFPA------HTAAVNDLSFDVD----GEYVGSCSD---------- 113 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~-~~~~--~~~~~------h~~~V~~l~~s~~----g~~l~s~~~---------- 113 (724)
-.++.++|+++++-...|.|++++.. +... ..+.. ..+....|+|+|+ +.+.++-+.
T Consensus 31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~ 110 (454)
T 1cru_A 31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL 110 (454)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence 34677888877665544579988863 4432 22221 2346779999995 444444432
Q ss_pred --CCCEEEEeccCC--c------eEE-EeCC-C-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 114 --DGSVVINSLFTD--E------KMK-FDYH-R-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 114 --Dg~v~iwd~~~~--~------~~~-~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
...|.-++...+ . +.. +... . ....++|.|+ +.++++.+
T Consensus 111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-----G~Lyv~~G 162 (454)
T 1cru_A 111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-----QKIYYTIG 162 (454)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-----SCEEEEEC
T ss_pred ccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-----CeEEEEEC
Confidence 124555555331 1 111 2221 1 5788999999 77666644
No 398
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=77.50 E-value=10 Score=38.13 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=17.3
Q ss_pred CchhHHHHHhccCChHHHHHHHHH
Q 004914 692 LLREQVFILGRMGNTKHALAVIIN 715 (724)
Q Consensus 692 ~~~e~v~Ll~k~g~~~~Al~l~~~ 715 (724)
.+..++.+|.++|++++|+..+-.
T Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 283 SRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345567778888888888877654
No 399
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.49 E-value=2.4 Score=41.83 Aligned_cols=57 Identities=12% Similarity=-0.137 Sum_probs=39.5
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
...+...|+|++|+...+...........+....+..+...|++++|.+.+.+.+..
T Consensus 62 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788999999999876542200011235556677778899999999987777654
No 400
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=77.48 E-value=22 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
..+...-.++.+|...|+|++|+.++-+
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~ 56 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICT 56 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333445788899999999999998876
No 401
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=76.92 E-value=15 Score=39.88 Aligned_cols=55 Identities=22% Similarity=0.030 Sum_probs=34.7
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+.+.|+|++|+..++........-.......+.-++..|+|++|.+.+.+.+.
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4567788888888887654331111123455566667777888888876666555
No 402
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=76.06 E-value=65 Score=36.02 Aligned_cols=147 Identities=7% Similarity=0.027 Sum_probs=78.5
Q ss_pred cCCEEEEEeCCC------eEEEEecCCCeeEEEcC-Cccce-eEEEEcCCCCEEEEEeCCC--CEEEEeccCCceEEEeC
Q 004914 63 AERMIALGTHAG------TVHILDFLGNQVKEFPA-HTAAV-NDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMKFDY 132 (724)
Q Consensus 63 ~~~~la~g~~dg------~I~i~d~~~~~~~~~~~-h~~~V-~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (724)
+++++++|+.++ .+.+||.....-..+.. ..... .+.+...++..++.||.++ .+.+||..++.-..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 777888887543 57788875544322211 11111 1222224788888887655 68899998866544332
Q ss_pred ------CC-CeeEEEeCCCCCCCCCCEEEEecC--C-----CeEEEEecccCCc----cceEec----cCCCCeEEEEEe
Q 004914 133 ------HR-PMKAISLDPDYTRKMSRRFVAGGL--A-----GHLYLNSKKWLGY----RDQVLH----SGEGPVHVVKWR 190 (724)
Q Consensus 133 ------~~-~v~~v~~~p~~~~~~~~~l~~g~~--d-----g~v~l~~~~~~~~----~~~~l~----~~~~~V~~l~~~ 190 (724)
.+ ...++.+... .+..++.|+. + +.+..|+..-... ....+. .......++.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~----~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPV----SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp SSGGGGSCCBSCEEEEETT----TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred CCCCCCcccceeEEEEeCC----CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 22 2333555443 2467778875 2 2466666431110 011111 122233455666
Q ss_pred -CCEEEEE-c--------CCcEEEEEcCCCceE
Q 004914 191 -TSLIAWA-N--------DAGVKVYDAANDQRI 213 (724)
Q Consensus 191 -~~~la~~-~--------d~~i~i~d~~~~~~~ 213 (724)
+.+++.| . ...+.+||..+.+..
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6666655 2 235899999887654
No 403
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.71 E-value=6.7 Score=34.68 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=49.9
Q ss_pred eeCCchhhHHHHHhcccHHHHHHHHHh-------cCC--CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 392 KPRDAEDHIAWLLEHGWHEKALAAVEA-------GQG--RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 392 ~~~~~~d~i~~ll~~~~~~~Al~~~~~-------~~~--~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..-..-|+++-|+++++|+.|.-++.. .++ ..+..-++..-+++.+|.+++|..|...|...+.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444567899999999999999977542 232 3455677889999999999999999998777655
No 404
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=75.66 E-value=30 Score=33.88 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCC-chhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 409 HEKALAAVEAGQGR-SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 409 ~~~Al~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
+++|+...+..... ...-..+...|+..+...|++++|.+.+.+.+..
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 38899887755431 1112357888999999999999999988777763
No 405
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.28 E-value=45 Score=29.77 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCchhhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHh
Q 004914 394 RDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAAS 448 (724)
Q Consensus 394 ~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~ 448 (724)
.|.+.+.+..++-|+++.|+++|+.... ....++-++.-+.+|+++-|..
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~ 55 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEM 55 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHH
Confidence 4667788999999999999999986542 2355666666677888877776
No 406
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=75.17 E-value=2.6 Score=35.36 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=38.3
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..++++|+|++|+...+........-..+....+.-++..|+|++|...|.+.+..
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 45889999999998876542200011235555666777889999999987777763
No 407
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=75.01 E-value=6.9 Score=43.96 Aligned_cols=149 Identities=10% Similarity=-0.050 Sum_probs=79.2
Q ss_pred HHHHHhcccHHHHHHHHHhcC--------CCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHH---HHHH
Q 004914 400 IAWLLEHGWHEKALAAVEAGQ--------GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERW---VFHF 468 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~--------~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~---i~~F 468 (724)
....+..++|++|++.++... .....-..+....+..++..|+|++|.+.+.+.+..++..|+-+ -..+
T Consensus 398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 398 VLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 333468999999998877543 11111224555667778888999999998888776433333332 2333
Q ss_pred hhcCCCCcccccCcCC---CCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHH
Q 004914 469 AHLRQLPVLVPYMPTE---NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALK 545 (724)
Q Consensus 469 ~~~~~l~~L~~~l~~~---~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 545 (724)
...++.+.=..++... .|.-....+.....+ .....+. . +...+..+.........+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~------------~~~g~~~-------~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATA------------ELAGNTD-------E-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH------------HHHTCCC-------T-TCHHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH------------HHcCChH-------H-HHHHHHHHHhCCchHHHH
Confidence 3333322211111110 111122222211111 1112221 1 222233333344455577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc
Q 004914 546 EALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 546 ~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
..++.+|...|++++|+.+|-+.
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888999999999999998774
No 408
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=74.56 E-value=63 Score=32.97 Aligned_cols=43 Identities=2% Similarity=-0.091 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 004914 525 LPVISAIEPQLNSSSMTDALKEALAELYVIDGH-YEKAFSLYAD 567 (724)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~-~~~al~~~~~ 567 (724)
+.++...+..+.........+..++.+|...|+ +++|+.++-+
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 344555555555556666677788888888886 9999988776
No 409
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=73.72 E-value=8.9 Score=35.25 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHH----------------HHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSR----------------YLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~----------------~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+++.|+|++|+...+.... .++ -...... .+..++..|+|++|...+.+.+..++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 567899999999998765432 111 1112222 67778889999999998888776443
No 410
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=73.02 E-value=17 Score=33.56 Aligned_cols=56 Identities=5% Similarity=-0.156 Sum_probs=40.9
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+...|+|++|+..++...........+....+.-++..|+|++|.+.+.+.+..
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45778999999999987653211113356666777788899999999987777763
No 411
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=72.43 E-value=14 Score=39.40 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 543 ALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
..+..|+.+|...|+|++|+.+|-+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3556778889999999999888765
No 412
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=72.33 E-value=15 Score=38.36 Aligned_cols=57 Identities=21% Similarity=0.016 Sum_probs=32.8
Q ss_pred hHHHHHhcccHHHHHHHHHhcCC------Cch--hHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQG------RSE--LLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~------~~~--~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.++-+..+|+|++|+.+++.... ..+ ....+...-+.-+..+|+|++|..++.+.+.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44556678888888888764421 111 1222333333444567888888886665554
No 413
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=71.54 E-value=8.8 Score=40.84 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchH-HHHHhhhhhhhccC---hhhHHHHHHHHhhcCCCCcccccCc
Q 004914 407 GWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKY-AEAASLCPKLLRGS---ASAWERWVFHFAHLRQLPVLVPYMP 482 (724)
Q Consensus 407 ~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~Aa~~~~~~~~~~---~~~we~~i~~F~~~~~l~~L~~~l~ 482 (724)
+.+++|+...+...........+....+..++..|+| ++|.+.+.+.+..+ ...|-.....+...+++..=..++.
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466666665543221112334566667777888888 88888877766543 3344444444444444322222221
Q ss_pred CC---CCCCCHHHHHHHHHHHHcCC--ccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhc--
Q 004914 483 TE---NPRLRDTAYEVALVALATNP--SFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVID-- 555 (724)
Q Consensus 483 ~~---~~~l~~~~~~~~L~~~l~~~--~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~-- 555 (724)
.. .|. ...+.. |...+... ... .+... +.+.++...+..+.........+..++.+|...
T Consensus 162 ~al~~~p~--~~~~~~-lg~~~~~~~~~~~---~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN--KVSLQN-LSMVLRQLQTDSG---DEHSR-------HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC--HHHHHH-HHHHHTTCCCSCH---HHHHH-------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC--HHHHHH-HHHHHHHhccCCh---hhhhh-------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 11 122 112221 11222211 000 00000 112333444444444455556777788888888
Q ss_pred ------CCHHHHHHHHHHcC--Cc---h---hhHHH----HhcCChHHHHHHHHHHHccChh
Q 004914 556 ------GHYEKAFSLYADLM--KP---Y---IFDFI----ENHNLHDAIREKVVQLMLLDCK 599 (724)
Q Consensus 556 ------~~~~~al~~~~~~~--~~---~---~~~~i----~~~~l~~~~~~~~~~L~~~~~~ 599 (724)
|++++|+.+|-+.- ++ . ++..+ .+.+-++.........++++|.
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999988731 23 2 22211 2334555555555555555554
No 414
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=71.18 E-value=4.7 Score=30.65 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+...|+|++|+...+........-..+....+..++..|+|++|...+.+.+..
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55778999999999876542200011245566677788899999999987777664
No 415
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=71.06 E-value=10 Score=39.06 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=37.2
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccch-HHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERK-YAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~-~~~Aa~~~~~~~~~~~ 458 (724)
..+...|+|++|+..++.... .+. -..+...-+.-+...|+ |++|...+.+.+..++
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 446778999999998765422 111 11234444555667786 9999998888877543
No 416
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=71.04 E-value=23 Score=34.16 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC--------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG--------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~--------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+..++.... .......+....+..++..|+|++|...+.+.+.
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 557789999999988764421 1122345666677778899999999887766554
No 417
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.96 E-value=16 Score=34.52 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 407 GWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 407 ~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..|++|+++++.... .......+....+..++..|+|++|...+.+.+.
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA 71 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 347777777765432 2223455677778888899999999987666554
No 418
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=70.63 E-value=13 Score=37.79 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHhcccHHHHHHHHHhcC------CCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQ------GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~------~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+... ........+....+.-++..|+|++|...+.+.+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888888888887754321 23334445555666667778999998887776665
No 419
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=70.56 E-value=53 Score=33.04 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=53.4
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEecCCCeeEEE-------cCCccceeEEEEcCC----CCEEEEEeC-------CCCEE
Q 004914 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEF-------PAHTAAVNDLSFDVD----GEYVGSCSD-------DGSVV 118 (724)
Q Consensus 57 i~~~s~~~~~la~g~~dg~I~i~d~~~~~~~~~-------~~h~~~V~~l~~s~~----g~~l~s~~~-------Dg~v~ 118 (724)
-.++.++|+.+.++...|.|++++.++.....+ .........|+++|+ +...++-+. ...|.
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~ 101 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG 101 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence 346778888344566789999998755421111 112345688999995 544444332 22466
Q ss_pred EEeccCC--ce---EE-E---eC---CC-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 119 INSLFTD--EK---MK-F---DY---HR-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 119 iwd~~~~--~~---~~-~---~~---~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
.|++..+ .+ .. + .. .. ....++|.|+ +.++++.+
T Consensus 102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-----G~Lyv~~G 148 (353)
T 2g8s_A 102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK-----GYLFIALG 148 (353)
T ss_dssp EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS-----SEEEEEEC
T ss_pred EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC-----CcEEEEEC
Confidence 6665432 11 11 1 11 11 3467999999 65555543
No 420
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.26 E-value=17 Score=34.31 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=38.6
Q ss_pred HHHHhcccHHHHHHHHHhcCC--------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG--------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~--------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+..++.... .......+....+.-++..|+|++|...+.+.+.
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 557789999999988764321 1222345666677778889999999987666554
No 421
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=70.26 E-value=42 Score=37.76 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHc---C--CchhhHH----HHhcCChHHHHHHHHHHHccChhHHHHHhhhcCCC
Q 004914 541 TDALKEALAELYVIDGHYEKAFSLYADL---M--KPYIFDF----IENHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDL 611 (724)
Q Consensus 541 ~~~~~~~l~~ly~~~~~~~~al~~~~~~---~--~~~~~~~----i~~~~l~~~~~~~~~~L~~~~~~~~~~ll~~~~~~ 611 (724)
++..+..|+.+|...|++++|+.+|-+. . +..+... ..+.+-++.........++++|..+--. .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~-~----- 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-S----- 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-H-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-H-----
Confidence 3445667778888888888888887662 1 1112211 1233344444444444455554421111 0
Q ss_pred CChHHHHHHHhcccccCCchhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhcC
Q 004914 612 ITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVKR 690 (724)
Q Consensus 612 ~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~~ 690 (724)
....+...+. + ......+++..+..++.. ...+..+-.+|. .-+.++-+..+ ++||++-..+
T Consensus 82 -nLg~~l~~~g------~-~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~--------~~Al~l~P~~ 144 (723)
T 4gyw_A 82 -NMGNTLKEMQ------D-VQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASY--------RTALKLKPDF 144 (723)
T ss_dssp -HHHHHHHHTT------C-HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH--------HHHHHHCSCC
T ss_pred -HHHHHHHHcC------C-HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH--------HHHHHhCCCC
Confidence 0111111111 1 222235556666666643 334444555553 33333333333 3444444322
Q ss_pred -CCchhHHHHHhccCChHHHHHHH
Q 004914 691 -DLLREQVFILGRMGNTKHALAVI 713 (724)
Q Consensus 691 -~~~~e~v~Ll~k~g~~~~Al~l~ 713 (724)
..+-.++.+|.++|++++|...+
T Consensus 145 ~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 145 PDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred hHHHhhhhhHHHhcccHHHHHHHH
Confidence 24456677888888888776543
No 422
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=70.17 E-value=90 Score=31.01 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=30.8
Q ss_pred EEEecCCEEEEEeC-C---------CeEEEEecCCCeeEEEcCC--ccceeEEEEcCCCCEEEEEeCC
Q 004914 59 CVAVAERMIALGTH-A---------GTVHILDFLGNQVKEFPAH--TAAVNDLSFDVDGEYVGSCSDD 114 (724)
Q Consensus 59 ~~s~~~~~la~g~~-d---------g~I~i~d~~~~~~~~~~~h--~~~V~~l~~s~~g~~l~s~~~D 114 (724)
+...+++++++|+. + ..+.+||.....-..+... .......+...+++.++.|+.+
T Consensus 61 ~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 34457888888876 2 3678888865543332221 1111111222567777888765
No 423
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=70.10 E-value=52 Score=28.22 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHH-hcchhhhHHHhhhcCCCCHHHHHHHHhcC-CCchhHHHHHhccCChHHHHHH
Q 004914 635 HLYLHALFEVNPHAGKDFHDMQVELYA-DYDLKMLLPFLRSSQHYTLEKAYEICVKR-DLLREQVFILGRMGNTKHALAV 712 (724)
Q Consensus 635 ~~yL~~l~~~~~~~~~~~~~~lv~Ly~-~~~~~~ll~fL~~~~~y~~~~al~~c~~~-~~~~e~v~Ll~k~g~~~~Al~l 712 (724)
..+++.+....+. ....+..+..+|. .-+.++-+.+++. ++++.... ..+..++.++.++|++++|+..
T Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~--------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 96 VPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKI--------ALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH--------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHH--------HHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3566666665553 3344455555553 3344444444332 33333221 2445677788999999999987
Q ss_pred HHH
Q 004914 713 IIN 715 (724)
Q Consensus 713 ~~~ 715 (724)
+-.
T Consensus 167 ~~~ 169 (186)
T 3as5_A 167 FKK 169 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 424
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=70.03 E-value=5.2 Score=31.21 Aligned_cols=58 Identities=16% Similarity=-0.004 Sum_probs=41.5
Q ss_pred hHHHHHhcccHHHHHHHHHhcCC-CchhHhH-HHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQG-RSELLDE-VGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~-i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
+...++..|+|++|+..++.... .+.. .. +....+..++..|+|++|.+.+.+.+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44678899999999999875432 1111 23 55666777888999999999888877643
No 425
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=70.01 E-value=22 Score=30.32 Aligned_cols=55 Identities=7% Similarity=-0.144 Sum_probs=31.5
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++..|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4466777888888776543210000123444555666677778777776655554
No 426
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=69.50 E-value=19 Score=39.09 Aligned_cols=52 Identities=8% Similarity=-0.179 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 406 HGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 406 ~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
.|++++|+..++........-.......+..++..|+|++|.+.+.+.+..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4678888888765443111122455666777788899999999888877643
No 427
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=68.58 E-value=41 Score=32.45 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=37.3
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCC----CchhH--hHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQG----RSELL--DEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~----~~~~~--~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
+.+..++.+++|++|+.+++.... ..+.. .......+...+..++|++|...+.+.+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 456778899999999999876432 11111 11222344556677889999887666554
No 428
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=68.42 E-value=78 Score=33.18 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=40.2
Q ss_pred cceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe----------CCCCeeEEEeCCCCCCCCCCEEEEe
Q 004914 94 AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD----------YHRPMKAISLDPDYTRKMSRRFVAG 156 (724)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~----------~~~~v~~v~~~p~~~~~~~~~l~~g 156 (724)
..-++|+|.|+|+++++-...+.|++++..++....+. ....+..++|+|+|..+ +...++-
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEE
Confidence 34578999999997776554457888876555443221 11266799999988654 3444443
No 429
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=68.31 E-value=3.4 Score=36.12 Aligned_cols=54 Identities=11% Similarity=-0.085 Sum_probs=33.8
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+.+.|+|++|+...+.... .+. -.......+.-++..|+|++|...|.+.+.
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 346778888888888664321 000 122444455666778888888887777665
No 430
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=68.02 E-value=59 Score=32.72 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceEEEe-------CCC-CeeEEEeCCCCCCCCCCEEEEec
Q 004914 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD-------YHR-PMKAISLDPDYTRKMSRRFVAGG 157 (724)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~-------~~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (724)
+..+...-..-+.|+|.|+|+.+++--..|.|++++..++....+. ... ....++++|+|..+ +..+++-+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt 102 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASD-HMVYAYFT 102 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHH-CEEEEEEE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccC-CEEEEEEe
Q ss_pred CCCeEEEEecccCC---------ccceEec----cCCCCeEEEEEe--CCEEEEEcCCc
Q 004914 158 LAGHLYLNSKKWLG---------YRDQVLH----SGEGPVHVVKWR--TSLIAWANDAG 201 (724)
Q Consensus 158 ~dg~v~l~~~~~~~---------~~~~~l~----~~~~~V~~l~~~--~~~la~~~d~~ 201 (724)
....-++......+ ....++. ........|.|. |.+.++..|++
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
No 431
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.60 E-value=47 Score=26.78 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=23.3
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 538 SSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 538 ~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.......+-.++.+|...|++++|+.++-+
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 334455677788899999999999988765
No 432
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=67.50 E-value=6.5 Score=30.98 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=39.6
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.-..+...|+|++|+...+...........+....+..++..|+|++|.+.+.+.+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 446688999999999987654220001123556677778889999999987766665
No 433
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.45 E-value=6.5 Score=32.38 Aligned_cols=57 Identities=16% Similarity=-0.022 Sum_probs=39.7
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
-..+++.|+|++|+...+........-..+....+.-++..|+|++|...+.+.+..
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356789999999999876543200011245566677778899999999988777763
No 434
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=67.34 E-value=41 Score=29.77 Aligned_cols=50 Identities=14% Similarity=-0.078 Sum_probs=29.9
Q ss_pred HHhcccHHHHHH---HHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 403 LLEHGWHEKALA---AVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 403 ll~~~~~~~Al~---~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
++..|+|++|.. ++...+ .....+....+..++..|+|++|...+.+.+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHP---ATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp -----CHHHHHHHHHHHHTST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 467899999999 554322 12334555666667788999999886665544
No 435
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=66.96 E-value=7.4 Score=30.83 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..++..|+|++|+...+........-..+....+.-++..|+|++|...+.+.+..++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 5678899999999987654220001124556677778889999999998888776543
No 436
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=66.67 E-value=29 Score=35.29 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=30.2
Q ss_pred HHHHhcccHHHHHHHHHhcCC----------------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG----------------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~----------------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++++|+|++|+...+.... .......+....+.-++..++|++|...|.+.+.
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 446678888888877654331 0111223444445555566666666665555544
No 437
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=66.58 E-value=28 Score=30.03 Aligned_cols=93 Identities=8% Similarity=-0.153 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccH
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFH 507 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~ 507 (724)
+.....+..++..|+|++|...|.+.+..++...+.| +..-. .|... .+.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~----------------------------~~lg~-~~~~~-g~~ 86 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI----------------------------MGLAA-IYQIK-EQF 86 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH----------------------------HHHHH-HHHHT-TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------------------------HHHHH-HHHHH-ccH
Confidence 4556667788999999999998888777433211111 11111 11111 111
Q ss_pred HHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 508 KYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 508 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
+..+...+..+.........+-.++..|...|++++|+.+|-+
T Consensus 87 -----------------~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 87 -----------------QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp -----------------HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1222222233333333444666888899999999999998865
No 438
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=66.49 E-value=5.2 Score=34.06 Aligned_cols=55 Identities=9% Similarity=-0.274 Sum_probs=38.1
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+++.|+|++|+...+.... .+. -..+....+.-++..|+|++|...+.+.+..
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 557889999999988765321 011 1234455666678899999999987777663
No 439
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.96 E-value=9.4 Score=31.23 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=41.3
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.....+.+.|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3446688999999999998765331111234666677778899999999987766655
No 440
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=65.22 E-value=19 Score=40.28 Aligned_cols=81 Identities=11% Similarity=-0.062 Sum_probs=53.4
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh---hhHHHHHHHHhhcCCCCcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA---SAWERWVFHFAHLRQLPVL 477 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~---~~we~~i~~F~~~~~l~~L 477 (724)
..+++.|+|++|+..++......-.-.......+.-++..|+|++|.+.+.+.+..++ ..|-..-..+...++.+.
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 5688999999999987654320000123555566667889999999999888886443 445555556666676666
Q ss_pred cccCc
Q 004914 478 VPYMP 482 (724)
Q Consensus 478 ~~~l~ 482 (724)
..++.
T Consensus 520 ~~~~~ 524 (681)
T 2pzi_A 520 HKFYQ 524 (681)
T ss_dssp TCHHH
T ss_pred HHHHH
Confidence 55443
No 441
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=65.09 E-value=5.6 Score=34.36 Aligned_cols=55 Identities=11% Similarity=-0.228 Sum_probs=37.5
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+++.|+|++|+...+.... .+ .-.......+.-++..|+|++|...|.+.+..
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 457889999999988764321 00 01234455666778889999999987777663
No 442
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=65.02 E-value=17 Score=38.08 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 544 LKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.+..|+.+|...|+|++|+.+|-+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHH
Confidence 555778889999999999988764
No 443
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=64.91 E-value=1.1e+02 Score=29.86 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=84.0
Q ss_pred EEEEEeCCCeEEEEecCCCeeE--EEcCCccceeEEEEcCCCCEEEEEeC----CC-------CEEEEeccCCceEEE--
Q 004914 66 MIALGTHAGTVHILDFLGNQVK--EFPAHTAAVNDLSFDVDGEYVGSCSD----DG-------SVVINSLFTDEKMKF-- 130 (724)
Q Consensus 66 ~la~g~~dg~I~i~d~~~~~~~--~~~~h~~~V~~l~~s~~g~~l~s~~~----Dg-------~v~iwd~~~~~~~~~-- 130 (724)
++++|+ ..+..||.....-. .+..............++..++.|+. ++ .+.+||..++.-..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 455666 57889998655422 22112122233334457787777773 11 266788877654433
Q ss_pred -eCCCCeeEEEeCCCCCCCCCCEEEEecCC--------CeEEEEecccCCccceEe---ccCCCCeEEEEEeCCEEEEE-
Q 004914 131 -DYHRPMKAISLDPDYTRKMSRRFVAGGLA--------GHLYLNSKKWLGYRDQVL---HSGEGPVHVVKWRTSLIAWA- 197 (724)
Q Consensus 131 -~~~~~v~~v~~~p~~~~~~~~~l~~g~~d--------g~v~l~~~~~~~~~~~~l---~~~~~~V~~l~~~~~~la~~- 197 (724)
...+.-.+++.. + +..++.|+.+ ..+.+++.. ......+ ......-..+...+.+++.+
T Consensus 85 ~p~~r~~~~~~~~-~-----~~lyv~GG~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 85 LPSPRCLFGLGEA-L-----NSIYVVGGREIKDGERCLDSVMCYDRL--SFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp BSSCEESCEEEEE-T-----TEEEEECCEESSTTCCBCCCEEEEETT--TTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCcchhceeEEEE-C-----CEEEEEeCCcCCCCCcccceEEEECCC--CCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 112211222222 2 4677777742 235555543 1111122 11222223333446665555
Q ss_pred c-C-----CcEEEEEcCCCceEEEecCCCCCCCCCCCCCceeecCCCeEEEE-eCC-----eEEEEEEeeC
Q 004914 198 N-D-----AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT-----YIKIASIKTN 256 (724)
Q Consensus 198 ~-d-----~~i~i~d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~-----~i~vw~~~~~ 256 (724)
. + ..+.+||..+.+-...-..+ .. ....+.+..++.+++.| .++ .+.+||+.++
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQ----TA-RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCS----SC-CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCC----Cc-hhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 3 2 35889998877544321111 11 11222333466777777 333 3666665443
No 444
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=64.78 E-value=41 Score=27.67 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 544 LKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.+..+...|...|++++|+.+|-+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455677889999999999998865
No 445
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=63.95 E-value=60 Score=31.23 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=35.9
Q ss_pred hhhHHHHHhcccHHHHHHHHHhcC----CCchh--HhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 397 EDHIAWLLEHGWHEKALAAVEAGQ----GRSEL--LDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 397 ~d~i~~ll~~~~~~~Al~~~~~~~----~~~~~--~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
...+..++..|+|++|++.++... ..... ........+..+...|+|++|...+.+.+.
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345677889999999999876432 11111 111222234445677889999887665554
No 446
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.72 E-value=1.3e+02 Score=35.08 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=42.2
Q ss_pred CeEEEEEeC--CE-EEEEcCCcEEEEEcCCCceEEEecCCCCCCCCC-CCCCceeecCCCeEEEE----eCCeEEEEEEe
Q 004914 183 PVHVVKWRT--SL-IAWANDAGVKVYDAANDQRITFIERPRGSPRPE-LLLPHLVWQDDTLLVIG----WGTYIKIASIK 254 (724)
Q Consensus 183 ~V~~l~~~~--~~-la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~~~~~l~~g----~d~~i~vw~~~ 254 (724)
.+.++...+ .+ ++.+-|+.+|+|++.+++++.+........... .....+.-..+..+.+- .++..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 345555552 34 455689999999999999998765543221111 11111111234444433 56778888876
Q ss_pred eCC
Q 004914 255 TNQ 257 (724)
Q Consensus 255 ~~~ 257 (724)
.+.
T Consensus 317 ~~~ 319 (950)
T 4gq2_M 317 ANA 319 (950)
T ss_dssp EC-
T ss_pred cCC
Confidence 543
No 447
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=63.62 E-value=5.5 Score=31.55 Aligned_cols=54 Identities=13% Similarity=-0.045 Sum_probs=38.1
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+++.|+|++|+...+.... .+. ...+....+.-+...|+|++|.+.+.+.+.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557889999999998765432 111 123555666777889999999988777664
No 448
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=63.58 E-value=7.9 Score=33.79 Aligned_cols=56 Identities=9% Similarity=-0.185 Sum_probs=39.5
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+++.|+|++|+...+........-..+....+.-++..|+|++|...+.+.+..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 56788999999999876543200011345566677788899999999987777763
No 449
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=63.29 E-value=54 Score=28.06 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCcc
Q 004914 427 DEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSF 506 (724)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~ 506 (724)
.......+..++..|+|++|...+.+.+..++. ....+..+=..|+... +
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----------------------------~~~~~~~l~~~~~~~g-~ 60 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-----------------------------NPIYLSNRAAAYSASG-Q 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------------CHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----------------------------CHHHHHHHHHHHHHcc-C
Confidence 345666777888999999999987777663221 1112222212222211 1
Q ss_pred HHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 507 HKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 507 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
. +..+..++..+.........+..++.+|...|++++|+.+|-+
T Consensus 61 ~-----------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 61 H-----------------EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp H-----------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 1222222233333334455777889999999999999998875
No 450
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=61.88 E-value=29 Score=34.67 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHhcccHHHHHHHHHhcC----CCc-----------hhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQ----GRS-----------ELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~----~~~-----------~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+++.|+|++|+...+... ... .....+....+.-++..|+|++|...|.+.+.
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44778999999998876432 110 00124555666677788899999887777666
No 451
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.60 E-value=43 Score=28.48 Aligned_cols=28 Identities=18% Similarity=-0.058 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.....+-.++.+|...|++++|+.+|-+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344667788899999999999998765
No 452
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=61.47 E-value=53 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=21.6
Q ss_pred eCCchhhHHHHHhcccHHHHHHHHHhcC
Q 004914 393 PRDAEDHIAWLLEHGWHEKALAAVEAGQ 420 (724)
Q Consensus 393 ~~~~~d~i~~ll~~~~~~~Al~~~~~~~ 420 (724)
..+.++.|.-.|=.|+|+.|+.+|-...
T Consensus 143 ~~~~d~~I~~aLl~Gd~e~AV~~cl~~~ 170 (399)
T 2pm7_A 143 SGNIEQTISKNLVSGNIKSAVKNSLEND 170 (399)
T ss_dssp CSHHHHHHHHHHHTTCHHHHHHHHHTTT
T ss_pred ChhHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3455677888888999999999976544
No 453
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=61.42 E-value=11 Score=31.15 Aligned_cols=59 Identities=15% Similarity=-0.129 Sum_probs=40.8
Q ss_pred hhHHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..-..+++.|+|++|+..++.... .+. -.......+.-++..|++++|...+.+.+..+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344678999999999998765432 111 12344556666778899999999877777643
No 454
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=61.26 E-value=1.5e+02 Score=30.40 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=99.7
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEec--C--CCe---------eEEEcCCccceeEEEEcCCCCEEEEEeCCCCEEEEec
Q 004914 56 AASCVAVAERMIALGTHAGTVHILDF--L--GNQ---------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122 (724)
Q Consensus 56 ~i~~~s~~~~~la~g~~dg~I~i~d~--~--~~~---------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~ 122 (724)
.+..++......+.-+.+|.|+.|-. + |+. ..........|..|+.. ..+.+....||.|..|-.
T Consensus 128 ~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~ 205 (423)
T 3mvd_K 128 KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGC 205 (423)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeC
Confidence 46677777777777788999999964 2 221 11111122356666543 456677778999999964
Q ss_pred cC-Cce----------------------EEEeCC--CCeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCcc----
Q 004914 123 FT-DEK----------------------MKFDYH--RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR---- 173 (724)
Q Consensus 123 ~~-~~~----------------------~~~~~~--~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~---- 173 (724)
.. +++ ..+... .+|..|+-... ..++.-..+|.+..|-....+..
T Consensus 206 n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~------~~~~~~~~~g~v~~wG~n~~gqlg~~~ 279 (423)
T 3mvd_K 206 AEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY------CTFMRESQTQVIWATGLNNFKQLAHET 279 (423)
T ss_dssp CTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT------EEEEEETTTCCEEEEEECTTCTTSSCC
T ss_pred CcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc------EEEEEECCCCeEEEEeCCCCCcCCCCC
Confidence 43 111 111111 15555554433 34444468889988843322210
Q ss_pred ------ceEeccCCCCeEEEEEeC-CEEEEEcCCcEEEEEcCCCceEE------EecCCCCCCCCCCCCCceeecCCCeE
Q 004914 174 ------DQVLHSGEGPVHVVKWRT-SLIAWANDAGVKVYDAANDQRIT------FIERPRGSPRPELLLPHLVWQDDTLL 240 (724)
Q Consensus 174 ------~~~l~~~~~~V~~l~~~~-~~la~~~d~~i~i~d~~~~~~~~------~i~~~~~~~~~~~~~~~l~~~~~~~l 240 (724)
..........|..|+... ..++...++.|..|-......+. ....|.........+..++......+
T Consensus 280 ~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~ 359 (423)
T 3mvd_K 280 KGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSY 359 (423)
T ss_dssp TTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEE
T ss_pred CCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEE
Confidence 001111134566665553 45566678999999754211100 00000000000002333444455667
Q ss_pred EEEeCCeEEEEEEee
Q 004914 241 VIGWGTYIKIASIKT 255 (724)
Q Consensus 241 ~~g~d~~i~vw~~~~ 255 (724)
+...++.|+.|-...
T Consensus 360 alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 360 AVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEETTSCEEEEECCT
T ss_pred EEcCCCCEEEECCCC
Confidence 777899999997544
No 455
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=61.08 E-value=34 Score=28.61 Aligned_cols=55 Identities=16% Similarity=-0.029 Sum_probs=36.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+..++.... .......+....+..++..|+|++|...+.+.+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678999999988764332 1122234556667778889999999987665543
No 456
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.90 E-value=8.6 Score=31.94 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=39.8
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
-..++..|+|++|+...+........-..+....+.-++..|+|++|...+.+.+..
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356789999999999876542200011346666777788899999999877776653
No 457
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=60.44 E-value=6.5 Score=32.03 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+.... .++ -..+....+.-++..|+|++|...+.+.+.
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457788999999988765422 111 134566677778888999999887777665
No 458
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=60.13 E-value=83 Score=33.43 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=89.4
Q ss_pred cccHH-------HHHHHHHhcCC--CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChh----hHHHHHHHHhhcC
Q 004914 406 HGWHE-------KALAAVEAGQG--RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS----AWERWVFHFAHLR 472 (724)
Q Consensus 406 ~~~~~-------~Al~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~----~we~~i~~F~~~~ 472 (724)
.|+++ +|+.+.+.... .+. -..+...|+..+...|++++|.+.|.+.+...+. .|-.+..-....+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence 68876 88988876653 122 2468889999999999999999998888764332 3433332222222
Q ss_pred CCCcccccCcCC--CCCCCHHH-HHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcchHHHHHHHH
Q 004914 473 QLPVLVPYMPTE--NPRLRDTA-YEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALA 549 (724)
Q Consensus 473 ~l~~L~~~l~~~--~~~l~~~~-~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 549 (724)
.++.-...+... .+...... ....+..|... .+ .+......+..+........+...++
T Consensus 371 ~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~-~~-----------------~~~A~~~~e~al~~~p~~~~~~~~~~ 432 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KD-----------------KSVAFKIFELGLKKYGDIPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT-CC-----------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc-CC-----------------hhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 111111111110 01111111 11111111111 01 12233333333333334455677788
Q ss_pred HHHHhcCCHHHHHHHHHHcC-----Cch----hh----HHHHhcCChHHHHHHHHHHHccCh
Q 004914 550 ELYVIDGHYEKAFSLYADLM-----KPY----IF----DFIENHNLHDAIREKVVQLMLLDC 598 (724)
Q Consensus 550 ~ly~~~~~~~~al~~~~~~~-----~~~----~~----~~i~~~~l~~~~~~~~~~L~~~~~ 598 (724)
.++...|++++|..++-+.- +++ ++ ++-.+++..+.+.+.....++..|
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888899998888877631 122 22 233445555655555555555555
No 459
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=59.95 E-value=58 Score=27.14 Aligned_cols=28 Identities=18% Similarity=-0.017 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 540 MTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 540 ~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.....+-.++..|...|++++|+.++-+
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344667788899999999999998765
No 460
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=59.94 E-value=11 Score=29.95 Aligned_cols=57 Identities=14% Similarity=-0.061 Sum_probs=38.6
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
....++..|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345678899999999987654220001123555666677788999999987776665
No 461
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.50 E-value=16 Score=30.56 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=41.9
Q ss_pred hHHHHHhcccHHHHHHHHHhcCC--Cc-hhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQG--RS-ELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~--~~-~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.-..+++.|+|++|+...+.... +. .....+....+..++..++|++|...+.+.+.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34668899999999999876533 11 11345667777788899999999987776665
No 462
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=59.16 E-value=1.6e+02 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHHhhhhccCcchHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 004914 526 PVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (724)
..+..++..+.........+..++.+|...|++++|+.++-+.
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3444445555555566667788999999999999999998763
No 463
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.89 E-value=43 Score=34.34 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=35.2
Q ss_pred hHHHHHhcccHHHHHHHHHhc----CCCc-------------hhHhHHHHHHHHHHhccchHHHHHhhhhhhh
Q 004914 399 HIAWLLEHGWHEKALAAVEAG----QGRS-------------ELLDEVGSRYLDHLIVERKYAEAASLCPKLL 454 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~----~~~~-------------~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~ 454 (724)
..+-+++.|+|++|++..... +... .........-+.-++..|+|++|.+.+...+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346689999999999987532 1100 0112233444556678899999988665544
No 464
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=57.06 E-value=7.4 Score=32.46 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+.++|+|++|+...+.... .+. -..+....+.-++..|+|++|.+.|.+.+.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 347889999999998765322 111 112334445567788999999998777665
No 465
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=57.06 E-value=17 Score=29.24 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=28.4
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 4455667777777665532210000123444455555666677776666555544
No 466
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=56.17 E-value=15 Score=29.06 Aligned_cols=58 Identities=17% Similarity=-0.021 Sum_probs=40.7
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
...+...|+|++|+..++........-..+....+..++..|++++|...+.+.+...
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 3567889999999998765432000112455666777888999999999888777644
No 467
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=56.17 E-value=1.7e+02 Score=29.30 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=34.5
Q ss_pred eeEEEEcCCCCEEEEEeCC-------------CCEEEEeccCC--------c-eEEEeCCCCeeEEEeCCCCCCCCCCEE
Q 004914 96 VNDLSFDVDGEYVGSCSDD-------------GSVVINSLFTD--------E-KMKFDYHRPMKAISLDPDYTRKMSRRF 153 (724)
Q Consensus 96 V~~l~~s~~g~~l~s~~~D-------------g~v~iwd~~~~--------~-~~~~~~~~~v~~v~~~p~~~~~~~~~l 153 (724)
-..|.|.|+|.+.++.+.. |.|.-.+.... . .....+++....++|+|+ .+..+
T Consensus 137 ~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~----~g~l~ 212 (354)
T 3a9g_A 137 GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRA----SGVMV 212 (354)
T ss_dssp CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTT----TCCEE
T ss_pred CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCC----CCCEE
Confidence 4678999999977775432 44555555432 1 112234456778999994 15555
Q ss_pred EEe
Q 004914 154 VAG 156 (724)
Q Consensus 154 ~~g 156 (724)
++-
T Consensus 213 v~d 215 (354)
T 3a9g_A 213 ATE 215 (354)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
No 468
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=55.83 E-value=8 Score=41.25 Aligned_cols=55 Identities=7% Similarity=-0.168 Sum_probs=38.0
Q ss_pred HHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 402 WLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 402 ~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
.+.++|+|++|++..+........-..+....+..++..|+|++|.+.+.+.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3567899999999877543200011345566677788899999999987777663
No 469
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=55.53 E-value=11 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.009 Sum_probs=40.3
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
...+...|+|++|+..++........-..+....+.-++..|+|++|.+.+.+.+..+
T Consensus 57 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 57 AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3567789999999998765432000112455666777888999999999888777643
No 470
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=55.24 E-value=9.8 Score=29.86 Aligned_cols=57 Identities=18% Similarity=-0.049 Sum_probs=41.3
Q ss_pred HHHHHhcccHHHHHHHHHhcCC--CchhHhHHHHHHHHHHhcc-chHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQG--RSELLDEVGSRYLDHLIVE-RKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~--~~~~~~~i~~~~~~~l~~~-~~~~~Aa~~~~~~~~~ 456 (724)
-..+...|+|++|+...+.... +......+....+.-++.. |++++|.+.+.+.+..
T Consensus 47 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 3567889999999998765432 1111235667777888899 9999999988777664
No 471
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=55.20 E-value=11 Score=32.75 Aligned_cols=56 Identities=13% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHhcccHHHHHHHHHhcCCC------------------chhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGR------------------SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~------------------~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..++++|+|++|+......... ......+....+.-++..|+|++|...|.+.+..
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 5578899999999886543210 1112245555566678889999999988877764
No 472
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=54.43 E-value=49 Score=35.27 Aligned_cols=156 Identities=7% Similarity=-0.040 Sum_probs=79.5
Q ss_pred hhHHHHHhcccHHHHHHHHHhcC----CC-chhHhHHHHHHHHH-----HhccchHHHHHhhhhhhhcc----ChhhHHH
Q 004914 398 DHIAWLLEHGWHEKALAAVEAGQ----GR-SELLDEVGSRYLDH-----LIVERKYAEAASLCPKLLRG----SASAWER 463 (724)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~----~~-~~~~~~i~~~~~~~-----l~~~~~~~~Aa~~~~~~~~~----~~~~we~ 463 (724)
..|+.+-+.|++++|+++.+.-. .+ ......+...+... ....+..+.|.+++.+.... +...|..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34666778999999998865321 11 11122222221110 11233466666655544332 3344556
Q ss_pred HHHHHhhcCCCCcccccC---cCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccCcc
Q 004914 464 WVFHFAHLRQLPVLVPYM---PTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSM 540 (724)
Q Consensus 464 ~i~~F~~~~~l~~L~~~l---~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (724)
+|.-+...+.++.-...+ ....-..+...|..+|..|.... +.+.-.+++... .+ ..-..
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M--------------~~--~G~~P 173 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHM--------------VE--SEVVP 173 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH--------------HH--TTCCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHH--------------Hh--cCCCC
Confidence 666666655543322222 11112235566777776666542 222222221110 01 01123
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q 004914 541 TDALKEALAELYVIDGHYEKAFSLYADLMK 570 (724)
Q Consensus 541 ~~~~~~~l~~ly~~~~~~~~al~~~~~~~~ 570 (724)
....+..|...|.+.|+.++|+.++-++++
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 345777888889999999999998888653
No 473
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=54.34 E-value=19 Score=29.28 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=40.7
Q ss_pred hHHHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 399 HIAWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
.-..+++.|+|++|+...+.. +... ....+....+.-++..|+|++|...+.+.+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGV-YTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346688999999999887643 2221 12245566677788899999999987776663
No 474
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=53.91 E-value=87 Score=25.33 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 539 SMTDALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 539 ~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
......+..++.+|...|++++|+.++-+
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33455677788899999999999988765
No 475
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=52.34 E-value=2.9e+02 Score=30.86 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=85.1
Q ss_pred ceEEEEecC-CEEEEEeCCCeEEEEecCC------Cee---EEEcC----CccceeEEEEcCCCCEEEEEeCCCCEEEEe
Q 004914 56 AASCVAVAE-RMIALGTHAGTVHILDFLG------NQV---KEFPA----HTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (724)
Q Consensus 56 ~i~~~s~~~-~~la~g~~dg~I~i~d~~~------~~~---~~~~~----h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (724)
.|.++..+. ..|-+|+..|-+.++|... ... ..+.. ....|.++..+++|...+.++..+-+..+|
T Consensus 420 ~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d 499 (758)
T 3ott_A 420 WTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKIN 499 (758)
T ss_dssp SEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred eEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence 456666543 4666788766677787531 111 11111 123589999999999776444445588889
Q ss_pred ccCCceEEEeCC----C-CeeEEEeCCCCCCCCCCEEEEecCCCeEEEEecccCCccceEec--c-CCCCeEEEEEe-CC
Q 004914 122 LFTDEKMKFDYH----R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--S-GEGPVHVVKWR-TS 192 (724)
Q Consensus 122 ~~~~~~~~~~~~----~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~l~--~-~~~~V~~l~~~-~~ 192 (724)
..++....+... . .+.++..+.+ +...+ |+..| +..++.. ......+. + ....|.++... |.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~-----g~lWi-gt~~G-l~~~~~~--~~~~~~~~~~gl~~~~i~~i~~~~g~ 570 (758)
T 3ott_A 500 PRTREVTKLFADELTGEKSPNYLLCDED-----GLLWV-GFHGG-VMRINPK--DESQQSISFGSFSNNEILSMTCVKNS 570 (758)
T ss_dssp TTTTEEEEECTTTSCGGGCEEEEEECTT-----SCEEE-EETTE-EEEECC----CCCCBCCCCC---CCEEEEEEETTE
T ss_pred CCCCceEEecCCCcCCCcccceEEECCC-----CCEEE-EecCc-eEEEecC--CCceEEecccCCCccceEEEEECCCC
Confidence 887776655321 2 5778877776 55554 44555 5555432 11121121 1 13457777666 55
Q ss_pred EEEEEcCCcEEEEEcCCCceE
Q 004914 193 LIAWANDAGVKVYDAANDQRI 213 (724)
Q Consensus 193 ~la~~~d~~i~i~d~~~~~~~ 213 (724)
+.++ ++.++..||..+.+..
T Consensus 571 lWi~-t~~Gl~~~~~~~~~~~ 590 (758)
T 3ott_A 571 IWVS-TTNGLWIIDRKTMDAR 590 (758)
T ss_dssp EEEE-ESSCEEEEETTTCCEE
T ss_pred EEEE-CCCCeEEEcCCCceeE
Confidence 4444 4667899998876644
No 476
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.58 E-value=2.4e+02 Score=29.78 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.+...-++.+-..|++++|.+++.+...
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~ 54 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR 54 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566678888899999999987666544
No 477
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=51.57 E-value=45 Score=34.98 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=28.1
Q ss_pred HHHHhcccHHHHHHHHHhcC----CCc-----------hhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQ----GRS-----------ELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~----~~~-----------~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..++++|+|++|+...+... ... .....+....+.-++..++|++|...|.+.+.
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34566777777776654321 110 00123333444455566666666665555554
No 478
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=51.35 E-value=18 Score=29.10 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccchHHHHHhhhhhhhccC---hhhHHHHHHHHhhcCC
Q 004914 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAHLRQ 473 (724)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~---~~~we~~i~~F~~~~~ 473 (724)
......+..++..|+|++|...+.+.+... ...|-.....+...++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Confidence 455556667777888888888777666432 3344444444444444
No 479
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=50.82 E-value=12 Score=30.16 Aligned_cols=54 Identities=17% Similarity=0.002 Sum_probs=36.6
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+..++.... .+. ........+.-+...|++++|...+.+.+.
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 27 KTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 557789999999988765432 111 123445566667788999999887766654
No 480
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=50.34 E-value=78 Score=29.60 Aligned_cols=56 Identities=5% Similarity=-0.174 Sum_probs=37.5
Q ss_pred HHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhc--------cchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIV--------ERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~--------~~~~~~Aa~~~~~~~~~ 456 (724)
..+.+.|+|++|+...+.... ............+..++. .|+|++|...+.+.+..
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 557899999999998765321 111223344445556666 89999999877776653
No 481
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=49.28 E-value=15 Score=33.65 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=40.2
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..+.+.|+|++|+...+.... .+. -.......+.-++..|+|++|...+.+.+..+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 567889999999998765432 111 12355566777888999999999888877743
No 482
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=48.66 E-value=19 Score=28.70 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=37.3
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
..+...|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5577899999999987654220001123555667778889999999887666554
No 483
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=48.16 E-value=66 Score=34.27 Aligned_cols=154 Identities=9% Similarity=0.025 Sum_probs=83.3
Q ss_pred hHHHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccChhhHHHHH----HHHhhcCC
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWV----FHFAHLRQ 473 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~~~we~~i----~~F~~~~~ 473 (724)
....+.+.|++++|..+.+.... .+.....+...|+..+...|++++|.+.+.+.+...+..+..++ ..|...+.
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 34667789999999999775432 11111247888898888999999999988887765433232221 11211221
Q ss_pred CCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCccChHHHHHHHhhhhccC----cchHHHHHHHH
Q 004914 474 LPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSS----SMTDALKEALA 549 (724)
Q Consensus 474 l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ 549 (724)
......+|+..|..+= .+.......+... ..+=+.+.+....+..+... .....+.....
T Consensus 407 ------------~~~A~~~~e~al~~~p---~~~~~~~~~~~~~-~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 407 ------------KSVAFKIFELGLKKYG---DIPEYVLAYIDYL-SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp ------------HHHHHHHHHHHHHHHT---TCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHCC---CCHHHHHHHHHHH-HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1122334444443321 1222222222111 01123344444444444321 12344666666
Q ss_pred HHHHhcCCHHHHHHHHHHc
Q 004914 550 ELYVIDGHYEKAFSLYADL 568 (724)
Q Consensus 550 ~ly~~~~~~~~al~~~~~~ 568 (724)
.+....|+.+.+..++-+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7778889999998877653
No 484
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.38 E-value=2.2e+02 Score=28.06 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=17.8
Q ss_pred EEEEEeCCEEEEE-cC--C----cEEEEEcCCCceEEEecCC
Q 004914 185 HVVKWRTSLIAWA-ND--A----GVKVYDAANDQRITFIERP 219 (724)
Q Consensus 185 ~~l~~~~~~la~~-~d--~----~i~i~d~~~~~~~~~i~~~ 219 (724)
.++.+.+.+++.+ .+ + .+.++++++++.+...+.+
T Consensus 311 ~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 311 VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 3444456655544 32 2 3556688888877765444
No 485
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=47.21 E-value=95 Score=29.75 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=35.8
Q ss_pred HHHHhcccHHHHHHHHHhcC----CCch--hHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 401 AWLLEHGWHEKALAAVEAGQ----GRSE--LLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~----~~~~--~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.++..+++|++|+...+... ...+ ....+....+..++..|+|++|...+.+.+.
T Consensus 123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556789999998876432 1111 1233455566667789999999987666553
No 486
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=46.73 E-value=20 Score=30.89 Aligned_cols=57 Identities=19% Similarity=0.038 Sum_probs=40.6
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccCh
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~~ 458 (724)
..+++.|+|++|+..++.... .+. -.......+.-++..|+|++|...+.+.+..++
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 457789999999999875432 111 123555667778889999999998887776443
No 487
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=46.60 E-value=95 Score=29.83 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 544 LKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
.++.++.+|...|+|++|+.+|.+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555667788999999999998874
No 488
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=46.39 E-value=25 Score=27.93 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=39.3
Q ss_pred hHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
....+...|+|++|+...+........-..+....+.-++..|++++|...+.+.+..
T Consensus 49 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3466788999999998876542200011234455666778899999999987776653
No 489
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.01 E-value=16 Score=30.41 Aligned_cols=55 Identities=13% Similarity=-0.120 Sum_probs=39.5
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+...|+|++|+..++.... ... -..+....+.-++..|+|++|.+.+.+.+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 557889999999998765422 111 1345556677788899999999988877764
No 490
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=45.89 E-value=44 Score=33.91 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCC------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 409 HEKALAAVEAGQG------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 409 ~~~Al~~~~~~~~------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
|++|+...+.... .......+....+..++..|+|++|...+.+.+.
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999887654321 1122334556667778889999999887766554
No 491
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=45.56 E-value=1.4e+02 Score=28.92 Aligned_cols=150 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HhcccHHHHHHHHH-----------hcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC---------hhhHHH
Q 004914 404 LEHGWHEKALAAVE-----------AGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS---------ASAWER 463 (724)
Q Consensus 404 l~~~~~~~Al~~~~-----------~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~---------~~~we~ 463 (724)
+..|+|++|.++.+ ......+.-.....+-+..+...|+|++|...+.+.+.-. ...+..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHHcCCccHHHHHHHhhcCCCCcc---ChHHHHHHHhhhhccCcc
Q 004914 464 WVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIY---SALPVISAIEPQLNSSSM 540 (724)
Q Consensus 464 ~i~~F~~~~~l~~L~~~l~~~~~~l~~~~~~~~L~~~l~~~~~~~~~~~~i~~~~~~l~---~~~~~~~~~~~~~~~~~~ 540 (724)
....+...++ ....-..|+..|..+.... +..........+ ..+| +.+..+...+..+.....
T Consensus 82 lg~~~~~~g~------------~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~l-g~~~~~g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 82 AGMMLKDLQR------------MPEAVQYIEKASVMYVENG-TPDTAAMALDRA-GKLMEPLDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp HHHHHHHTTC------------GGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC------------HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHh
Q ss_pred h------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004914 541 T------DALKEALAELYVIDGHYEKAFSLYAD 567 (724)
Q Consensus 541 ~------~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (724)
. ...+..++.+|...|+|++|+.++-+
T Consensus 148 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
No 492
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=45.37 E-value=16 Score=29.57 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=37.9
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
-..+...|+|++|+...+........-..+....+..++..|+|++|...+.+.+.
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 35678899999999987654220001123555667777889999999987666554
No 493
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=45.33 E-value=1.2e+02 Score=28.92 Aligned_cols=54 Identities=7% Similarity=-0.017 Sum_probs=36.1
Q ss_pred HHHhcccHHHHHHHHHhcCC------CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhc
Q 004914 402 WLLEHGWHEKALAAVEAGQG------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (724)
Q Consensus 402 ~ll~~~~~~~Al~~~~~~~~------~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~ 455 (724)
.+...|+|++|+...+.... .......+....+..++..|+|++|...+.+.+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678899999998765421 1111234555566677789999999987666553
No 494
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.06 E-value=38 Score=40.51 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=28.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.+.+++..++..++++.+.|+++|||++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4455666778889999999999999999998764
No 495
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=44.88 E-value=20 Score=30.65 Aligned_cols=57 Identities=11% Similarity=-0.092 Sum_probs=39.6
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
...+...|+|++|+..++...........+....+.-++..|+|++|...+.+.+..
T Consensus 54 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 54 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788999999999876543200011235566677788899999999987776653
No 496
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=44.81 E-value=13 Score=30.17 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHhcCCC---chhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 406 HGWHEKALAAVEAGQGR---SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 406 ~~~~~~Al~~~~~~~~~---~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
.|+|++|+...+..... ......+....+.-++..|+|++|...+.+.+..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57788888887655432 2234456777788889999999999987776653
No 497
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=44.62 E-value=17 Score=29.88 Aligned_cols=56 Identities=13% Similarity=-0.079 Sum_probs=38.3
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhccC
Q 004914 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~~ 457 (724)
..+...|++++|+...+.... .++ -.......+..+...|++++|...+.+.+..+
T Consensus 59 ~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 59 LTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457789999999998765432 111 12355556667788999999999888777643
No 498
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=44.43 E-value=33 Score=27.72 Aligned_cols=56 Identities=11% Similarity=-0.156 Sum_probs=39.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhccchHHHHHhhhhhhhcc
Q 004914 401 AWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (724)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~Aa~~~~~~~~~ 456 (724)
..+.+.|+|++|+...+.... ............+.-++..|++++|...+.+.+..
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 557889999999988765321 11112345556677778899999999988777764
No 499
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.79 E-value=65 Score=37.53 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=29.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCEEEEeccCCceE
Q 004914 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (724)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (724)
.+.++...++..++++.+.|+++|+|++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4667777788889999999999999999998764
No 500
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.49 E-value=2.6e+02 Score=31.09 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=42.0
Q ss_pred CeEEEEEeCCE-EEEEcCCcEEEEEcCCCceEEEecCCCCCCCCC-------CCCCceeecCCCeEEEE---eCCeEEEE
Q 004914 183 PVHVVKWRTSL-IAWANDAGVKVYDAANDQRITFIERPRGSPRPE-------LLLPHLVWQDDTLLVIG---WGTYIKIA 251 (724)
Q Consensus 183 ~V~~l~~~~~~-la~~~d~~i~i~d~~~~~~~~~i~~~~~~~~~~-------~~~~~l~~~~~~~l~~g---~d~~i~vw 251 (724)
.|.++.+...+ ++.+-|+.+|+|++.+++++............. ....-+..- +..+++= .+|..++|
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~-~~~lv~y~P~~~G~Fk~~ 301 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY-NNTLVTLLPLENGLFQMG 301 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES-SSEEEEEETTTTCEEEEE
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe-eeEEEEEecCCCCeEEEE
Confidence 35666665555 455579999999999999888766632210000 000111111 2344322 66789999
Q ss_pred EEeeCC
Q 004914 252 SIKTNQ 257 (724)
Q Consensus 252 ~~~~~~ 257 (724)
.+....
T Consensus 302 ~l~~~~ 307 (729)
T 3f7f_A 302 TLLVDS 307 (729)
T ss_dssp EEEC--
T ss_pred EEEEcC
Confidence 997544
Done!