Query 004917
Match_columns 724
No_of_seqs 207 out of 292
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2256 Predicted protein invo 100.0 1E-154 3E-159 1283.7 53.2 554 131-691 66-636 (661)
2 COG5604 Uncharacterized conser 100.0 5E-101 1E-105 813.9 29.7 426 192-667 92-522 (523)
3 PF03715 Noc2: Noc2p family; 100.0 1E-100 3E-105 811.9 29.5 296 372-668 1-299 (299)
4 PF04147 Nop14: Nop14-like fam 99.2 1.2E-08 2.7E-13 122.9 28.9 238 373-647 512-757 (840)
5 KOG2147 Nucleolar protein invo 97.6 0.0083 1.8E-07 70.5 22.6 167 455-626 534-707 (823)
6 PF04147 Nop14: Nop14-like fam 97.5 0.0051 1.1E-07 75.2 20.5 274 197-513 426-715 (840)
7 KOG2256 Predicted protein invo 96.9 0.12 2.6E-06 60.5 21.9 32 131-163 87-118 (661)
8 KOG1832 HIV-1 Vpr-binding prot 94.2 0.027 5.8E-07 67.3 2.5 11 142-152 1466-1476(1516)
9 PF04931 DNA_pol_phi: DNA poly 93.3 0.1 2.2E-06 63.7 5.4 16 211-226 761-776 (784)
10 KOG2141 Protein involved in hi 92.4 13 0.00028 44.8 20.3 36 398-433 503-541 (822)
11 PF03224 V-ATPase_H_N: V-ATPas 92.2 3.8 8.1E-05 44.4 15.0 187 294-491 51-254 (312)
12 cd00256 VATPase_H VATPase_H, r 88.8 21 0.00047 40.9 17.7 152 297-466 52-217 (429)
13 KOG0212 Uncharacterized conser 84.4 15 0.00033 43.2 13.4 94 338-434 335-446 (675)
14 PF03378 CAS_CSE1: CAS/CSE pro 80.9 15 0.00032 42.2 11.8 213 372-600 21-253 (435)
15 KOG2759 Vacuolar H+-ATPase V1 77.8 14 0.00031 42.0 10.0 156 298-466 65-230 (442)
16 KOG1832 HIV-1 Vpr-binding prot 77.7 3.1 6.8E-05 50.7 5.1 7 157-163 1496-1502(1516)
17 KOG2147 Nucleolar protein invo 73.2 91 0.002 38.1 15.4 138 241-384 389-561 (823)
18 KOG3241 Uncharacterized conser 67.4 9.8 0.00021 38.5 5.1 14 59-72 161-174 (227)
19 KOG1992 Nuclear export recepto 66.8 1.2E+02 0.0026 37.6 14.7 181 326-526 480-686 (960)
20 KOG2141 Protein involved in hi 66.7 1.7E+02 0.0037 35.8 15.7 77 259-353 297-375 (822)
21 PF12755 Vac14_Fab1_bd: Vacuol 66.3 41 0.00088 30.7 8.6 63 333-396 21-83 (97)
22 PF01602 Adaptin_N: Adaptin N 64.9 22 0.00048 40.5 8.3 110 311-438 91-201 (526)
23 PF01602 Adaptin_N: Adaptin N 62.6 1.4E+02 0.003 34.1 14.2 154 330-515 142-298 (526)
24 KOG2038 CAATT-binding transcri 62.4 10 0.00022 45.9 4.9 7 71-77 858-864 (988)
25 KOG0262 RNA polymerase I, larg 59.2 31 0.00067 44.0 8.3 73 334-433 1532-1604(1640)
26 COG5101 CRM1 Importin beta-rel 55.8 1.6E+02 0.0035 35.7 12.8 184 305-505 199-415 (1053)
27 KOG1248 Uncharacterized conser 54.1 6.1E+02 0.013 32.9 22.4 238 208-467 105-376 (1176)
28 KOG2393 Transcription initiati 53.4 22 0.00048 41.5 5.5 15 58-72 228-242 (555)
29 KOG2171 Karyopherin (importin) 52.1 4.1E+02 0.0088 34.2 16.2 339 287-666 195-587 (1075)
30 PF05918 API5: Apoptosis inhib 49.6 37 0.00079 40.3 6.6 93 326-428 46-140 (556)
31 KOG3165 Predicted nucleic-acid 48.7 15 0.00032 36.8 2.8 26 1-28 1-27 (195)
32 KOG0212 Uncharacterized conser 44.7 63 0.0014 38.4 7.4 174 303-507 379-573 (675)
33 smart00543 MIF4G Middle domain 44.2 2.6E+02 0.0057 27.2 11.0 122 303-431 4-125 (200)
34 PF08167 RIX1: rRNA processing 43.9 1.4E+02 0.0031 29.5 9.0 84 289-374 58-149 (165)
35 KOG3871 Cell adhesion complex 43.2 21 0.00045 40.0 3.1 30 1-30 1-31 (449)
36 PF12074 DUF3554: Domain of un 42.6 4.9E+02 0.011 28.5 14.0 210 299-530 23-250 (339)
37 PHA02734 coat protein; Provisi 42.4 86 0.0019 30.2 6.6 68 562-633 7-74 (149)
38 PF11698 V-ATPase_H_C: V-ATPas 42.2 79 0.0017 30.2 6.5 67 302-368 47-115 (119)
39 KOG2011 Sister chromatid cohes 41.0 3.4E+02 0.0074 34.8 13.3 36 191-227 90-125 (1048)
40 COG5095 TAF6 Transcription ini 39.6 3.5E+02 0.0076 30.2 11.5 115 294-439 193-315 (450)
41 KOG2038 CAATT-binding transcri 38.7 4.3E+02 0.0093 32.9 13.0 117 292-409 417-566 (988)
42 PF13251 DUF4042: Domain of un 36.3 2.5E+02 0.0055 28.6 9.5 82 289-370 92-176 (182)
43 KOG1062 Vesicle coat complex A 36.1 4.5E+02 0.0097 32.8 12.7 197 265-486 60-281 (866)
44 PF02854 MIF4G: MIF4G domain; 35.5 3.7E+02 0.0079 26.1 10.4 109 303-416 4-118 (209)
45 COG4547 CobT Cobalamin biosynt 34.5 33 0.00072 39.6 3.1 13 62-74 213-225 (620)
46 PF02724 CDC45: CDC45-like pro 34.5 48 0.001 39.9 4.7 15 218-232 220-234 (622)
47 KOG0943 Predicted ubiquitin-pr 34.0 24 0.00053 44.7 2.1 65 76-186 1729-1793(3015)
48 PF03672 UPF0154: Uncharacteri 33.5 83 0.0018 27.0 4.6 32 193-224 31-62 (64)
49 KOG1241 Karyopherin (importin) 33.3 2.6E+02 0.0055 34.6 10.1 98 311-409 186-288 (859)
50 KOG1020 Sister chromatid cohes 33.1 1.2E+03 0.027 31.3 16.4 239 327-579 616-884 (1692)
51 PF10487 Nup188: Nucleoporin s 30.5 7.6E+02 0.017 31.5 14.2 167 314-527 601-825 (931)
52 PF04826 Arm_2: Armadillo-like 30.2 2E+02 0.0043 30.8 8.0 75 293-368 88-163 (254)
53 COG5117 NOC3 Protein involved 30.0 8.5E+02 0.018 28.7 13.0 31 287-317 211-241 (657)
54 PHA02458 A protein A*; Reviewe 29.2 1.2E+02 0.0025 32.3 5.7 49 373-423 200-250 (341)
55 PTZ00415 transmission-blocking 28.6 42 0.00091 44.3 2.9 16 62-77 142-157 (2849)
56 KOG1163 Casein kinase (serine/ 27.2 83 0.0018 34.1 4.4 57 363-455 245-301 (341)
57 PF12717 Cnd1: non-SMC mitotic 27.1 6.3E+02 0.014 25.0 10.9 97 329-433 15-113 (178)
58 cd05137 RasGAP_CLA2_BUD2 CLA2/ 26.7 6.1E+02 0.013 29.0 11.5 37 334-370 224-263 (395)
59 PF12830 Nipped-B_C: Sister ch 26.6 4.4E+02 0.0095 26.5 9.4 90 293-386 3-92 (187)
60 PF04889 Cwf_Cwc_15: Cwf15/Cwc 25.2 66 0.0014 34.3 3.3 12 131-142 149-160 (244)
61 KOG2153 Protein involved in th 24.9 1.4E+03 0.029 28.2 20.2 71 296-370 277-355 (704)
62 KOG3064 RNA-binding nuclear pr 24.5 45 0.00098 35.8 1.9 17 128-144 257-273 (303)
63 PTZ00429 beta-adaptin; Provisi 23.8 1.5E+03 0.032 28.3 16.5 43 339-383 298-340 (746)
64 cd00020 ARM Armadillo/beta-cat 23.5 2.7E+02 0.0059 24.2 6.5 64 303-367 54-119 (120)
65 COG3296 Uncharacterized protei 23.4 22 0.00049 34.3 -0.5 32 474-505 110-142 (143)
66 PF08559 Cut8_C: Cut8 six-heli 23.1 7.1E+02 0.015 24.4 9.7 91 256-366 8-101 (143)
67 PTZ00479 RAP Superfamily; Prov 23.1 1.2E+03 0.027 27.1 12.8 194 293-530 115-325 (435)
68 PF07165 DUF1397: Protein of u 22.7 8.8E+02 0.019 25.2 15.8 57 372-429 141-209 (213)
69 KOG0915 Uncharacterized conser 21.4 2.2E+03 0.047 29.3 15.8 75 445-531 1371-1451(1702)
70 PRK00011 glyA serine hydroxyme 21.0 45 0.00097 37.2 1.1 28 137-164 3-33 (416)
No 1
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-154 Score=1283.68 Aligned_cols=554 Identities=38% Similarity=0.617 Sum_probs=511.3
Q ss_pred HHHHHHHHHhhcCChhhhHhhhhhCccccCCCCCCCCCcccccccc---cc-CCCCCCC----------CCcccCCcccH
Q 004917 131 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDD---GM-QSMDEDG----------PHLYLNKLLTS 196 (724)
Q Consensus 131 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~~~~~~d~de~~~d---e~-~~~~~~~----------~~~~~~~~lT~ 196 (724)
..|+++|++|+++||+||+||++||++||+|++ |+++|++.|++| ++ .++++|. .+...+++||.
T Consensus 66 ~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~d~~~~~~~~~~~~~~~~~k~it~ 144 (661)
T KOG2256|consen 66 SKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEEDDEEDEIDKETDKKKNSGKVITV 144 (661)
T ss_pred hhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccccccccccchhhhhhcccchhhhhcccchhhH
Confidence 789999999999999999999999999999996 443333322211 11 0111111 11124568999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHhHHHHHHHhCCcCCCC
Q 004917 197 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK 276 (724)
Q Consensus 197 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~~VFn~vv~~~L~~lp~~l~~~l~~k~~~~ 276 (724)
.+|.+|++++...+++..+|++++||||||+++.+++ .++.+|.|+|+++||+||.+||+++|.+|+++|+++..++
T Consensus 145 ~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~---~e~~ky~i~ds~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~ 221 (661)
T KOG2256|consen 145 SNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDS---AEAPKYVITDSEAFNAVVIFCLQEMPDILRKLLRGKVDKD 221 (661)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHhccccc---ccccceeechHHHHHHHHHHHHHHhHHHHHHHcCCCcCCC
Confidence 9999999999999999999999999999999998762 2578999999999999999999999999999999998654
Q ss_pred CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhH
Q 004917 277 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVS 356 (724)
Q Consensus 277 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vr 356 (724)
+.... ....+|.++++++|||++++++||+++||+++++++|++++.++||+++||+++|.|+|++|++||||++++|
T Consensus 222 ~~~~~--~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~r 299 (661)
T KOG2256|consen 222 KSLFL--KTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLR 299 (661)
T ss_pred ccccc--cccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchh
Confidence 44442 3334499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 004917 357 FHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQL 436 (724)
Q Consensus 357 v~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRn 436 (724)
+.||+||+++|+.+.+.+++.|||+||.+||+||++|+++|||+||||+||++||||+|+..+|||||+|||||||||||
T Consensus 300 v~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRn 379 (661)
T KOG2256|consen 300 VLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRN 379 (661)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhhhcccchhHHHHHHHHHHHc-ccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004917 437 GLQTKKKEAVKKICSWQYANCIDLWVTYIS-HCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 515 (724)
Q Consensus 437 a~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs-~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t 515 (724)
||++++|++++.||||||||||+||++||| ++..+|+|+||+|||||||+||||||||+|||||||||||+|++||++|
T Consensus 380 am~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ss 459 (661)
T KOG2256|consen 380 AMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSS 459 (661)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 8888999999999999999999999999999999999999999999999
Q ss_pred CcceechhHHHHhhccccccC--CCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhH
Q 004917 516 GIFIPVTSLMLDVLEYKVSKE--VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATI 593 (724)
Q Consensus 516 ~~fIPl~p~LleiL~s~~~k~--~~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P 593 (724)
|+||||+|+|+|||.+...++ ++.+++|+||.++||||+.||+|++||++|++++++||+|||++||+|||||||++|
T Consensus 460 g~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPELv~p 539 (661)
T KOG2256|consen 460 GTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPELVLP 539 (661)
T ss_pred CceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHH
Confidence 999999999999999986543 455679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q 004917 594 PLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAAS 673 (724)
Q Consensus 594 ~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~~~~~~ 673 (724)
+|++||+|+|+|+++++++.+++|+++|++|++||+++|..|+|+|+|.++|++|+++ ..|.+||||+||.+|++++++
T Consensus 540 ~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~~V~afe~~-~~~~~TPl~~yy~~~rk~~~~ 618 (661)
T KOG2256|consen 540 VIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQAVSAFEQD-LDWNKTPLGQYYSSWRKVREE 618 (661)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 679999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHH
Q 004917 674 RSLIMNENKSFLEQKKQK 691 (724)
Q Consensus 674 r~~~~~~~~~~~~~~~~~ 691 (724)
++++++|+.++.+.++++
T Consensus 619 k~r~~~e~~~~~d~~~~~ 636 (661)
T KOG2256|consen 619 KNRLAVESSEEDDKDKPK 636 (661)
T ss_pred HHHHHhhhhhhhhhhhhh
Confidence 999999999998776655
No 2
>COG5604 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-101 Score=813.92 Aligned_cols=426 Identities=24% Similarity=0.327 Sum_probs=391.8
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHhHHHHHHHhCC
Q 004917 192 KLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGI 271 (724)
Q Consensus 192 ~~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~~VFn~vv~~~L~~lp~~l~~~l~~ 271 (724)
..||...+++|++.+...+|+..+++++.||++|+..+.++ .+.+|+|+|.++|+.++.+++.++|.++..|.|+
T Consensus 92 i~L~~~~~qkw~k~l~~~~sl~~lqk~~~afkaaa~ln~eE-----eDlKyti~d~k~f~~l~~l~~~~vp~a~~~~~p~ 166 (523)
T COG5604 92 ISLNQVSTQKWRKELDLLASLAYLQKLSGAFKAAALLNNEE-----EDLKYTIDDVKFFARLKILQDLRVPYAEILLTPF 166 (523)
T ss_pred eeeeHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhH-----HHHHhhhhHHHHHHHHHHHHHhhhhHHHHHhchh
Confidence 46999999999999999999999999999999999999875 3689999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCC
Q 004917 272 SSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATG 351 (724)
Q Consensus 272 k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~ 351 (724)
.+.+|. ..+++..+.-++++++|+|-+++++||+.+||.+.+++.|+...+++ | +++.
T Consensus 167 ~~~KG~---~~l~s~~~v~~i~~~~Ks~~gsvl~Lln~~tn~~~a~l~l~~a~n~i----~-------~i~s-------- 224 (523)
T COG5604 167 FEKKGY---QNLSSALDVIHIKKFSKSPNGSVLQLLNIFTNHSKARLDLQKAVNHI----C-------KIDS-------- 224 (523)
T ss_pred Hhhccc---cccCCCcCeEeeeehhcCCCchHHHHHHHhccchHHHHHHHHHHHHH----H-------HHhh--------
Confidence 765553 33454555558999999999999999999999999999999998874 2 1221
Q ss_pred CchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004917 352 EETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 431 (724)
Q Consensus 352 ~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 431 (724)
++++++|.+++..+..+.. |..|+++++|.|||++|+++|||+||....|++||.||||||
T Consensus 225 --t~~~a~f~~l~s~~l~f~k-----------------s~~t~v~~~d~in~lqnsa~nl~~Lde~~~~ki~f~yi~qLa 285 (523)
T COG5604 225 --TLSVAVFQVLYSPLLDFFK-----------------SSPTEVNDFDTINFLQNSAKNLFELDESYLYKIGFSYIRQLA 285 (523)
T ss_pred --hheehhHHHHHHHHHHHhh-----------------cCccccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4999999999998776533 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccC---CCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHH
Q 004917 432 RILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCI---HDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWL 508 (724)
Q Consensus 432 IhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~---~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L 508 (724)
|||||.|...++.+-+.|||||||||||||.+|||..| -+|.++.|+||+||+++|+||||||.|||||||||||+|
T Consensus 286 ~hLkn~v~~p~k~drk~Vynwqyv~Sldfwlrvisfa~wng~eS~~~~l~~~lvq~Tl~vIrlipT~Q~yplrfhllrSL 365 (523)
T COG5604 286 IHLKNTVLNPRKVDRKMVYNWQYVHSLDFWLRVISFAVWNGIESKLLRLHYPLVQYTLGVIRLIPTYQDYPLRFHLLRSL 365 (523)
T ss_pred HHHHHHhcCccchhhHHHhhHHHhhhcchHHHHHHHHHHhhhhhHHHHhhhHHHHHHhhheeecCcccccchhHHHHHHH
Confidence 99999999888877788999999999999999999744 478999999999999999999999999999999999999
Q ss_pred HHHHhccCcceechhHHHHhhccccc-cC-CCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCc
Q 004917 509 NHLSSSSGIFIPVTSLMLDVLEYKVS-KE-VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHIS 586 (724)
Q Consensus 509 ~~Ls~~t~~fIPl~p~LleiL~s~~~-k~-~~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIa 586 (724)
++|+++||+||||+|+|+|||.+... |. +...+++|||+++||++++||+|+.||++|++|+++||+|||++||++||
T Consensus 366 Irl~r~s~vyIPLs~~l~eiL~s~~~~k~p~as~l~~fDfd~~lk~~~e~Lrsk~yq~~viee~~~lL~eyfalfsknIa 445 (523)
T COG5604 366 IRLSRGSGVYIPLSPYLVEILKSAISVKNPKASVLRKFDFDSMLKPDTEYLRSKEYQMGVIEEASSLLLEYFALFSKNIA 445 (523)
T ss_pred HHHHhcCceEEeccHHHHHHHHHHHHhcCchhhhccccCchhhcCCCHHHHhHHHHHhhHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999998753 33 33359999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHH
Q 004917 587 FPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRS 666 (724)
Q Consensus 587 FPEL~~P~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~ 666 (724)
||||+.|+|++|||+.+.+ ++++.+-++|.+|+++++||++||.+|.|+|.|..+|++|+++ .+|..||||+|+..
T Consensus 446 FPELv~pvI~~lkrl~k~s---k~nk~vlt~vnkLeqq~kfv~eKRn~vkfs~iD~s~Vs~Fe~d-idw~~TpLG~yV~~ 521 (523)
T COG5604 446 FPELVGPVISELKRLRKGS---KLNKVVLTMVNKLEQQSKFVLEKRNKVKFSPIDGSTVSSFESD-IDWRSTPLGQYVSD 521 (523)
T ss_pred chhHhHHHHHHHHHHHhcc---chhhHHHHHHHHHhhhhHHHHHHhhcCccCCCChHHHHHHHHh-hhhccCCccceeec
Confidence 9999999999999999987 6788999999999999999999999999999999999999994 79999999999976
Q ss_pred H
Q 004917 667 V 667 (724)
Q Consensus 667 ~ 667 (724)
+
T Consensus 522 q 522 (523)
T COG5604 522 Q 522 (523)
T ss_pred c
Confidence 5
No 3
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=100.00 E-value=1.5e-100 Score=811.94 Aligned_cols=296 Identities=37% Similarity=0.647 Sum_probs=287.5
Q ss_pred cchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhccc
Q 004917 372 SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICS 451 (724)
Q Consensus 372 ~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYN 451 (724)
++++|.|||+||.+||+|||+||++|+|+||||+||++|||++|++++|||||+|||||||||||||+.++||+|++|||
T Consensus 1 ~~~~~~~lK~~Y~~~v~~~k~~~~~t~~~i~fm~n~~~EL~~ld~~~sY~~aF~yIRQLAi~LR~a~~~~~k~~~~~Vyn 80 (299)
T PF03715_consen 1 SDFLETCLKGMYLAYVRNSKFTSPNTLPHINFMKNCLVELYGLDPDVSYQHAFVYIRQLAIHLRNAMTSKKKEAYKSVYN 80 (299)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhheeeee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcc-cCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhHHHHhhc
Q 004917 452 WQYANCIDLWVTYISH-CIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLE 530 (724)
Q Consensus 452 WQfvhsL~~Ws~VLs~-~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~fIPl~p~LleiL~ 530 (724)
|||+|||+||++|||+ +..+++|+||||||||||+|+|||+||+|||||||||||+|++||++||+||||+|+|+|||+
T Consensus 81 Wqfv~~l~lW~~vls~~~~~~~~L~~LiyPLvqi~~g~i~L~pt~ry~Plrlh~ir~L~~L~~~t~~fIPl~~~lleiL~ 160 (299)
T PF03715_consen 81 WQFVHCLDLWSRVLSAAAKKESQLRPLIYPLVQIIIGVIKLIPTARYFPLRLHCIRSLNRLSQSTGTFIPLAPYLLEILE 160 (299)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhHhHHHHHHHHHHHHHhhcCccccCchHHHHHHHHHHHHHhcCceEecHHHHHHHHh
Confidence 9999999999999999 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc--CCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcccH
Q 004917 531 YKVSK--EVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVE 608 (724)
Q Consensus 531 s~~~k--~~~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~~k~~ 608 (724)
+..++ +++++++|+||++.||+|++|++|++|||+|++++++||+||+++||+||||||+++|++++||||+|.|++.
T Consensus 161 ~~~~~~~~k~~~~kp~d~~~~Lk~~k~~l~t~~~~d~v~e~~~~LL~e~la~~s~sIaFPEl~~pii~~LKr~~K~~k~~ 240 (299)
T PF03715_consen 161 SSEFNKKPKKSSMKPLDFECLLKVSKSQLRTRQFQDGVIEEVYELLLEYLAIYSYSIAFPELALPIIVQLKRFLKSCKNA 240 (299)
T ss_pred ChhhcCCCCCCCCCCcCHHHHhhccHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcccH
Confidence 98753 3456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHH
Q 004917 609 SLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVM 668 (724)
Q Consensus 609 ~~~~~ik~Lv~kie~n~~~I~~kR~~v~F~P~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~ 668 (724)
+|++++|+|+++|++|++||+++|++|+|+|+|.++|++|+++. .+++|||++||.+|+
T Consensus 241 ~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~-~~~~tPl~~~~~~~r 299 (299)
T PF03715_consen 241 KFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL-KWEGTPLGKYYASWR 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc-ccCCCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999965 489999999999985
No 4
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=99.16 E-value=1.2e-08 Score=122.93 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=146.5
Q ss_pred chHHHHHHHHHHHHHhhcccCCccchhhhHHH--HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcc
Q 004917 373 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFL--RNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKIC 450 (724)
Q Consensus 373 ~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfM--kNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VY 450 (724)
.++-.+|+.||..|.+..-..+..+||.+.-+ -.-+.-||.. .+-+..|.
T Consensus 512 ~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPT----------------------------SD~~HpVV 563 (840)
T PF04147_consen 512 ECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPT----------------------------SDFRHPVV 563 (840)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCc----------------------------ccccCcch
Confidence 34455677888888775444445567765521 1222233322 22222222
Q ss_pred cchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhH-HHHhh
Q 004917 451 SWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSL-MLDVL 529 (724)
Q Consensus 451 NWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~fIPl~p~-LleiL 529 (724)
.-|+=|-++.|++ |.-..++.+..-|+=+++-.--...+-||+|=-+..+..++.++.....-..+.|+ .+...
T Consensus 564 ----TPalllm~~~L~q-~~v~s~~di~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~L~~~~p~~~~~~~~~~~~~~~~ 638 (840)
T PF04147_consen 564 ----TPALLLMSEYLSQ-CRVRSLRDIASGLFLCTLLLEYQSLSKRFVPEVINFLLGLLLLLVPEKSKKSPSPFFPSKKP 638 (840)
T ss_pred ----hHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCcccccCCCCCCCCCc
Confidence 2355666777774 33445666666655444444444567899998888777666665322221101111 11111
Q ss_pred cccc-ccCC----CCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhh
Q 004917 530 EYKV-SKEV----GKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEK 604 (724)
Q Consensus 530 ~s~~-~k~~----~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~ 604 (724)
.... .+.. .....+++|...+ ......+..++-.|+..++.||..++.+|+...||||++.|++..|.++..
T Consensus 639 ~~~L~l~~~~~~~~~~~~~l~l~~l~--~~~~~~~~~~k~~lL~~~l~ll~~~~~l~~~~~af~eif~p~~~lL~~l~~- 715 (840)
T PF04147_consen 639 SSSLRLSSSSKSKSSEPKKLSLSDLF--SSSEEDSDQFKLSLLATALRLLDRFADLYSSLPAFPEIFEPFLSLLSHLDS- 715 (840)
T ss_pred ccceeecccccccccCcccCChhhhc--ccccccchhHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHh-
Confidence 1110 1111 1112347777666 677788999999999999999999999999999999999999999999876
Q ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHH
Q 004917 605 SDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEA 647 (724)
Q Consensus 605 ~k~~~~~~~ik~Lv~kie~n~~~I~~kR~~v~F~P~d~~~V~~ 647 (724)
-...+...+..++++|..........|..+.+.-.-...+..
T Consensus 716 -~~~~~~~~l~~l~~~l~~~~~~~~~~r~PL~l~~~kP~~I~~ 757 (840)
T PF04147_consen 716 -LPKALPEKLQELLEKLSKILKEARRSRRPLQLQKHKPIPIKT 757 (840)
T ss_pred -ccchhHHHHHHHHHHHHHHHHhccccCCCceeccCCCccccc
Confidence 334556788888888888888888778777654444444444
No 5
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0083 Score=70.48 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcceechhHHHHhhccc--
Q 004917 455 ANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYK-- 532 (724)
Q Consensus 455 vhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~fIPl~p~LleiL~s~-- 532 (724)
.-||=+-|.+|+++ +-..|+.+..-|+=+.+-.--..-+-||.|=-+..+|.++.++--...-+ -.|+=++++.+.
T Consensus 534 tPalllm~e~L~~~-p~~Sl~diakglfl~~ivleyvs~SkRyvPEvi~F~~~iL~~a~p~k~~~-~~~~~F~~~~~lse 611 (823)
T KOG2147|consen 534 TPALLLMSEALSQS-PIASLQDIAKGLFLANIVLEYVSESKRYVPEVINFLRGILLLAIPEKSSQ-EAPNPFEILKSLSE 611 (823)
T ss_pred cHHHHHHHHHHHhC-cchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccccccc-ccCCCcccCCCcch
Confidence 35667777777753 33456666555543322222223467999999999998888874322211 122223332221
Q ss_pred ----cccCCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhccc-
Q 004917 533 ----VSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDV- 607 (724)
Q Consensus 533 ----~~k~~~~~~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~~k~- 607 (724)
..+.-.....|.-+. +. --+.+.|..++-.|+..+++||-.+..+|.+-.||||+++||...|-.++..+..
T Consensus 612 lL~l~a~~d~~~l~p~~L~--l~-~~s~~~tp~~~~svL~~~l~li~~~~~iy~~l~af~eI~~pi~~lL~~~l~~e~~p 688 (823)
T KOG2147|consen 612 LLCLPANYDVTKLEPQSLS--LI-FLSSLSTPDLKVSVLRAVLELIEHLVLIYGSLPAFYEIFFPIFLLLLEYLQAESLP 688 (823)
T ss_pred hhccccccccccccccccc--hh-hhcCCCChhHHHHHHHHHHHHHHHHHHHHcccccHHHHHHhHHHHHHHHHhhccCc
Confidence 001111112222222 11 1234456669999999999999999999999999999999999999999887764
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 004917 608 ESLRRVVKRFIDVVEQNIE 626 (724)
Q Consensus 608 ~~~~~~ik~Lv~kie~n~~ 626 (724)
..+...+..++..++..+.
T Consensus 689 ~~l~Ekl~~~l~~vek~~~ 707 (823)
T KOG2147|consen 689 QELQEKLEDTLALVEKLTG 707 (823)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666777777777777776
No 6
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=97.53 E-value=0.0051 Score=75.15 Aligned_cols=274 Identities=15% Similarity=0.170 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHhHHHHHHHhCCcCCCC
Q 004917 197 SAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCK 276 (724)
Q Consensus 197 ~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~~VFn~vv~~~L~~lp~~l~~~l~~k~~~~ 276 (724)
...+...+.|. ..+..-...+|.-.|.+ |...=..+ .+-++ ..+..+.|++ ++-+-...
T Consensus 426 ~s~eel~~lL~-~~~~~~~~~iI~RIrk~-~hpsLa~~-----NK~Kl------~~f~~vLlq~-------i~~la~~~- 484 (840)
T PF04147_consen 426 SSHEELLELLD-GYSPEDQPTIIQRIRKC-YHPSLAEG-----NKEKL------QVFFGVLLQH-------ILYLASQD- 484 (840)
T ss_pred CCHHHHHHHHh-cCCHHHHhHHHHHHHHh-CCCCCCcc-----hHHHH------HHHHHHHHHH-------HHHHhccc-
Confidence 45667776674 66888888999999855 33221111 11111 1222222222 22211110
Q ss_pred CccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhh-hhhh-hhh----cchHHH-HHHHHHHHHhhc
Q 004917 277 RDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLR-TSIV-FFA----AFPLLI-RRLIKIAVHLWA 349 (724)
Q Consensus 277 k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~-~llp-y~~----~f~kl~-k~llK~lv~lWs 349 (724)
....|.-+..|+ .||.++.+....- -......+|..+. .+.+ .+. +||.+. =.|++.+-.||+
T Consensus 485 --------~~~~~~~ld~L~-~~L~~Laq~~p~~-~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFP 554 (840)
T PF04147_consen 485 --------SPPPFEVLDSLI-PHLYDLAQKYPEE-AAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFP 554 (840)
T ss_pred --------CCcCHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcC
Confidence 023344444444 4444444443321 1233333444442 2333 111 255543 467788888999
Q ss_pred CCC--chhHHHHHHHHHHHHhccCcchHHHHHHHHHH-----HHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHH
Q 004917 350 TGE--ETVSFHSFLILQDVASGFSSDCFDLCLIKMYK-----AFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNK 422 (724)
Q Consensus 350 ~~~--e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~-----~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~ 422 (724)
|++ ..|---|+++|.++....+-..+..+..++|+ .|++-||..-| ..|||+.+++.-+..-.... ...
T Consensus 555 TSD~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~vP---EvinFL~~~L~~~~p~~~~~-~~~ 630 (840)
T PF04147_consen 555 TSDFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFVP---EVINFLLGLLLLLVPEKSKK-SPS 630 (840)
T ss_pred cccccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCh---HHHHHHHHHHHHhCCCcccc-cCC
Confidence 998 45666788888887777777777777777774 67777755433 46999999998775433322 233
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCcc-chHHHHHHHHhhhhcccCCCcccchH
Q 004917 423 AKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQ-PLLYIIIQIINGMATLFPGPRYLPLR 501 (724)
Q Consensus 423 AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~-pLiYPLVQVi~G~irLiPt~ry~PLR 501 (724)
+|.-++...-.|+ + +.+..+..+-.+. |.|+.-.-........++ .|++-+++++-.++.|.-+.-=||--
T Consensus 631 ~~~~~~~~~~~L~--l--~~~~~~~~~~~~~----l~l~~l~~~~~~~~~~~k~~lL~~~l~ll~~~~~l~~~~~af~ei 702 (840)
T PF04147_consen 631 PFFPSKKPSSSLR--L--SSSSKSKSSEPKK----LSLSDLFSSSEEDSDQFKLSLLATALRLLDRFADLYSSLPAFPEI 702 (840)
T ss_pred CCCCCCCccccee--e--cccccccccCccc----CChhhhcccccccchhHHHHHHHHHHHHHHHHHHHHccCcCHHHH
Confidence 3332222222222 1 1111222222222 455544411111223344 47888888888888886654445555
Q ss_pred HHHHHHH-HHHHh
Q 004917 502 CKCIEWL-NHLSS 513 (724)
Q Consensus 502 fhlir~L-~~Ls~ 513 (724)
|.-+..| .+|..
T Consensus 703 f~p~~~lL~~l~~ 715 (840)
T PF04147_consen 703 FEPFLSLLSHLDS 715 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 5544444 44444
No 7
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.12 Score=60.55 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCChhhhHhhhhhCccccCCCC
Q 004917 131 ENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRN 163 (724)
Q Consensus 131 ~~hk~~L~~LkekDPEFyKyL~enD~eLL~F~~ 163 (724)
+.+-++|-++++ |||||+||+++|.+|++|.+
T Consensus 87 ~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~ 118 (661)
T KOG2256|consen 87 KEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSE 118 (661)
T ss_pred HhhhHHHhCCCC-CccchhhccCCccccccccc
Confidence 344478999999 99999999999999999944
No 8
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.22 E-value=0.027 Score=67.35 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=7.1
Q ss_pred cCChhhhHhhh
Q 004917 142 AKDPGFSKFLE 152 (724)
Q Consensus 142 ekDPEFyKyL~ 152 (724)
.-||||-.-|+
T Consensus 1466 ~~D~df~~ele 1476 (1516)
T KOG1832|consen 1466 LIDGDFMEELE 1476 (1516)
T ss_pred CCChHHHHHHh
Confidence 45888877443
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.32 E-value=0.1 Score=63.66 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHHHHh
Q 004917 211 NASAFISLLNAYRAAC 226 (724)
Q Consensus 211 sl~alr~lv~AFRaA~ 226 (724)
..+.-+..+..||.-|
T Consensus 761 ~~~~~~~~~~~Fk~Rv 776 (784)
T PF04931_consen 761 DAKEAKENVIHFKNRV 776 (784)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666777543
No 10
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=92.44 E-value=13 Score=44.85 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHhcCCc-cchhHHH--HHHHHHHHHH
Q 004917 398 FKHLQFLRNSFVELCSQDL-LRSSNKA--KVSINNLSRI 433 (724)
Q Consensus 398 l~~InfMkNs~~EL~~lD~-~~sYq~A--F~yIRQLAIh 433 (724)
.|.++||-.++.-|=.=++ .+.|-.+ +.-.|++-..
T Consensus 503 ~pR~rFmleti~aLKnN~~kki~~~d~e~ve~lrk~~k~ 541 (822)
T KOG2141|consen 503 SPRLRFMLETISALKNNKLKKIPYADPERVENLRKLKKA 541 (822)
T ss_pred chHHHHHHHHHHHHhcCCCcCCCcCChHHHHHHHHHHHH
Confidence 7999999999988876554 2223222 6667765443
No 11
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.17 E-value=3.8 Score=44.44 Aligned_cols=187 Identities=11% Similarity=0.100 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhhcchHHHHH--------HHHHHHHhhcCCCchhHHHHHHHHH
Q 004917 294 PLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFAAFPLLIRR--------LIKIAVHLWATGEETVSFHSFLILQ 364 (724)
Q Consensus 294 ~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~~f~kl~k~--------llK~lv~lWs~~~e~vrv~AFl~Lr 364 (724)
.-...|..-+++||+.+ ++++++.++|.-+..++.---.+-.+... ....++++-..++.-++..|..++-
T Consensus 51 ~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 51 EDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp -----------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33446777788999999 99999999999988754433333333322 3445555555566668877777777
Q ss_pred HHHhccCcchHH---HHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHH---HHHHHHHHHHHHhh
Q 004917 365 DVASGFSSDCFD---LCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAK---VSINNLSRILQLGL 438 (724)
Q Consensus 365 ~l~~~~~~~~le---~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF---~yIRQLAIhLRna~ 438 (724)
.++...+...-. .+| ..|..++++ ..+..+-+.+...-.|+.+|... -.|+..| ..+..|.-.||...
T Consensus 131 ~Ll~~~~~~~~~~~~~~l-~~ll~~L~~--~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEAL-PKLLQWLSS--QLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp HHHTSTTT--HHHHHHHH-HHHHHHHH---TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHH---
T ss_pred HHHHcCCccccchHHHHH-HHHHHHHHH--hhcCCCcchHHHHHHHHHHHhCc---chhHHHHHhcCcHHHHHHHHHhhc
Confidence 777766554444 444 666667776 44445556667778888888755 5677777 56666777776444
Q ss_pred hhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCc--cchHHHHHHHHhhhhcc
Q 004917 439 QTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDL--QPLLYIIIQIINGMATL 491 (724)
Q Consensus 439 ~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L--~pLiYPLVQVi~G~irL 491 (724)
..++.-.+|..| --++=+|.--.....-+ .+ ..+|..|++|+--+.|-
T Consensus 205 ~~~~~~~~Ql~Y----~~ll~lWlLSF~~~~~~-~~~~~~~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 205 TNSNSSGIQLQY----QALLCLWLLSFEPEIAE-ELNKKYLIPLLADILKDSIKE 254 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHTTSHHHHH-HHHTTSHHHHHHHHHHH--SH
T ss_pred ccCCCCchhHHH----HHHHHHHHHhcCHHHHH-HHhccchHHHHHHHHHhcccc
Confidence 445555666544 45556685433321100 01 12788888877665543
No 12
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=88.84 E-value=21 Score=40.94 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhh-------hhcc----hHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004917 297 KSYLRSTLFMLNQATDSEILAFSLNRLRTSIVF-------FAAF----PLLIRRLIKIAVHLWATGEETVSFHSFLILQD 365 (724)
Q Consensus 297 Ksyl~sll~LL~~ltd~~~l~~~L~~l~~llpy-------~~~f----~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~ 365 (724)
-.|...+++||+.++.++++..+|.-+..++.- |... +.....|++ +-...+.-+...||-+|-.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~----lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN----LLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH----HHcCCchhHHHHHHHHHHH
Confidence 578888999999999999999999988765433 3322 223333443 2234445577788877777
Q ss_pred HHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHH---HHHHHHHHHHHhhhhch
Q 004917 366 VASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKV---SINNLSRILQLGLQTKK 442 (724)
Q Consensus 366 l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~---yIRQLAIhLRna~~~k~ 442 (724)
++...+...-...+ ..|..++.+ ...+++....+.+--+|+.+|...+ .|+..|. .+.-|.-.||++.
T Consensus 128 l~~~~~~~~~~~~l-~~~~~~l~~-~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~~~~v~~L~~~L~~~~---- 198 (429)
T cd00256 128 LACFGLAKMEGSDL-DYYFNWLKE-QLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVLADGVPTLVKLLSNAT---- 198 (429)
T ss_pred HHhcCccccchhHH-HHHHHHHHH-HhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHHccCHHHHHHHHhhcc----
Confidence 76654433222222 234444442 2223345566777778999998875 4666665 4555666666544
Q ss_pred hhhhhhcccchhHHHHHHHHHHHc
Q 004917 443 KEAVKKICSWQYANCIDLWVTYIS 466 (724)
Q Consensus 443 Ke~~k~VYNWQfvhsL~~Ws~VLs 466 (724)
-.+|. ||--++=+|.--..
T Consensus 199 -~~~Ql----~Y~~ll~lWlLSF~ 217 (429)
T cd00256 199 -LGFQL----QYQSIFCIWLLTFN 217 (429)
T ss_pred -ccHHH----HHHHHHHHHHHhcc
Confidence 12333 66677778965444
No 13
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.44 E-value=15 Score=43.17 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC-------cchHHHHHHHHH----------HHHHh-hcccCCccchh
Q 004917 338 RRLIKIAVHLWATGEETVSFHSFLILQDVASGFS-------SDCFDLCLIKMY----------KAFIG-HCKFAEPALFK 399 (724)
Q Consensus 338 k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~-------~~~le~~LK~~Y----------~~yv~-~~k~t~~~tl~ 399 (724)
+.++..+....+...+.+||++.--|+-+-...| .+++.+.||+.= ...+. -|..-+.. .
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~ 412 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--N 412 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--c
Confidence 5677777777788888899998888887766554 334444444321 01111 12221111 2
Q ss_pred hhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Q 004917 400 HLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRIL 434 (724)
Q Consensus 400 ~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhL 434 (724)
.+.| -+|+.|||.-|+..-|..|=.-||||...|
T Consensus 413 ~~~f-l~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 413 LRKF-LLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHH-HHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 2444 478999999999999999999999986554
No 14
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=80.92 E-value=15 Score=42.22 Aligned_cols=213 Identities=10% Similarity=0.081 Sum_probs=125.4
Q ss_pred cchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhccc
Q 004917 372 SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICS 451 (724)
Q Consensus 372 ~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYN 451 (724)
.++.+.+|...+..+-++.. ..=.|...|+.-++.+-....-.++-.-+-+|+-+|....++.++-.| |
T Consensus 21 ~p~~~~ll~~Lf~~i~~~~s-------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~F----n 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEKPGS-------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRF----N 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHTT-S-------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHH----H
T ss_pred hhhHHHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch----h
Confidence 35556666666666544332 233577888888887766666677889999999999877776553322 2
Q ss_pred chhHHHHHHHHHHHcccCC--CCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHh---ccCcceechhHHH
Q 004917 452 WQYANCIDLWVTYISHCIH--DYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSS---SSGIFIPVTSLML 526 (724)
Q Consensus 452 WQfvhsL~~Ws~VLs~~~~--~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~---~t~~fIPl~p~Ll 526 (724)
---..||-.-.+..+.... -..+.+.++|+.|.|+. ---.-|+|..|+++-.|+.+.. -...|..++|.|+
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq----~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll 165 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQ----QDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL 165 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHH----TT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc
Confidence 1122334444444442111 12578889999998886 1225999999999999999987 3468888998888
Q ss_pred Hhhcccc--------------ccCCCCC-CCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccch
Q 004917 527 DVLEYKV--------------SKEVGKP-GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELA 591 (724)
Q Consensus 527 eiL~s~~--------------~k~~~~~-~k~~Df~~~lk~~k~~l~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~ 591 (724)
..--+.. .++.+.. ..+=.....|-+=+..+.++. .|.-...+++-+.+|+-.-.....+|.+.
T Consensus 166 ~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~-~D~~gF~LL~~iv~~~p~~~l~~yl~~I~ 244 (435)
T PF03378_consen 166 SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA-NDHYGFDLLESIVENLPPEALEPYLKQIF 244 (435)
T ss_dssp SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHHS-HHHHGGGHHHHH
T ss_pred CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 6544311 0111111 111223444555555555655 34445567777777777666666777776
Q ss_pred hHHHHHHHh
Q 004917 592 TIPLIHLRK 600 (724)
Q Consensus 592 ~P~ii~LKr 600 (724)
...+.+|..
T Consensus 245 ~lll~RLq~ 253 (435)
T PF03378_consen 245 TLLLTRLQS 253 (435)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 665555543
No 15
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=77.77 E-value=14 Score=41.98 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHh-hcC-----CC-chhHHH-HHHHHHHHHhc
Q 004917 298 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL-WAT-----GE-ETVSFH-SFLILQDVASG 369 (724)
Q Consensus 298 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~l-Ws~-----~~-e~vrv~-AFl~Lr~l~~~ 369 (724)
.|...+++||+++..+++..++|.-+..++.=.-++-.+.+.+--..-+. |.. .. +..-+. +|-+|-.++.-
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 67888999999999999999998877665433333333333322222222 332 12 223333 56666666554
Q ss_pred cCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHH--HHHHHHHHhhhhchhhhhh
Q 004917 370 FSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSIN--NLSRILQLGLQTKKKEAVK 447 (724)
Q Consensus 370 ~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIR--QLAIhLRna~~~k~Ke~~k 447 (724)
+ ..-++..-...|..+++..-.- .++...|+|+-+|+-+|+-++ .|+++|+=+- |+++++=. .++-+||
T Consensus 145 g-~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~---eyR~~~v~adg~~~l~~~l~----s~~~~~Q 215 (442)
T KOG2759|consen 145 G-NCKMELSELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVD---EYRYAFVIADGVSLLIRILA----STKCGFQ 215 (442)
T ss_pred c-cccccchHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCc---chhheeeecCcchhhHHHHh----ccCcchh
Confidence 4 4445555567788888763221 356678999999999999987 4898887532 22222211 3344555
Q ss_pred hcccchhHHHHHHHHHHHc
Q 004917 448 KICSWQYANCIDLWVTYIS 466 (724)
Q Consensus 448 ~VYNWQfvhsL~~Ws~VLs 466 (724)
- ||-.++=+|.--..
T Consensus 216 l----QYqsifciWlLtFn 230 (442)
T KOG2759|consen 216 L----QYQSIFCIWLLTFN 230 (442)
T ss_pred H----HHHHHHHHHHhhcC
Confidence 3 56666667865433
No 16
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.69 E-value=3.1 Score=50.75 Aligned_cols=7 Identities=14% Similarity=0.487 Sum_probs=3.0
Q ss_pred cccCCCC
Q 004917 157 GLKSFRN 163 (724)
Q Consensus 157 eLL~F~~ 163 (724)
++=||+.
T Consensus 1496 ~~~d~~s 1502 (1516)
T KOG1832|consen 1496 EMQDFMS 1502 (1516)
T ss_pred hhhcccC
Confidence 3334444
No 17
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=73.24 E-value=91 Score=38.09 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=63.5
Q ss_pred CccccCHHHHHHHHHHH----HHHhHHHHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHH--hhcCCcHH
Q 004917 241 GAPMLDCETFCKILMFV----LREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFM--LNQATDSE 314 (724)
Q Consensus 241 ky~I~d~~VFn~vv~~~----L~~lp~~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~L--L~~ltd~~ 314 (724)
.|+|.=|.-|.+++.+. +.+.|.++..+...-..+ +...|-++..++..++-.|+..+-.= +.+++--+
T Consensus 389 pfti~~Pk~yeef~~Ll~k~s~ed~~lIVeRI~kchhpk-----L~egNk~kl~kf~~~LLqy~~dLs~~~p~~~~~ll~ 463 (823)
T KOG2147|consen 389 PFTIECPKNYEEFLALLEKLSLEDMPLIVERIRKCHHPK-----LKEGNKKKLEKFYGVLLQYFDDLSKQDPLTNFQLLE 463 (823)
T ss_pred CeeecCCcCHHHHHHHHHccChhhhHHHHHHHHHhcCCc-----cccchHHHHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 45566555555555443 355566665544332210 01112234445555555555443321 12222234
Q ss_pred HHHHHHHHhhhhhhhhhcchHHHHHHHH-----------------------HHHHhh----cCCC--chhHHHHHHHHHH
Q 004917 315 ILAFSLNRLRTSIVFFAAFPLLIRRLIK-----------------------IAVHLW----ATGE--ETVSFHSFLILQD 365 (724)
Q Consensus 315 ~l~~~L~~l~~llpy~~~f~kl~k~llK-----------------------~lv~lW----s~~~--e~vrv~AFl~Lr~ 365 (724)
++..-|.++.+++|+.++--. +-+++. ..+.+| ++++ .-|=.-|++++..
T Consensus 464 ~l~~~L~~l~q~~pe~~~~~~-~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv~f~l~g~LFptSDf~HpVVtPalllm~e 542 (823)
T KOG2147|consen 464 MLVAHLISLAQMFPEIASIVR-CVRLLERIHEKGEQIKQKNHPVSPSLDDLVFFKLTGLLFPTSDFRHPVVTPALLLMSE 542 (823)
T ss_pred HHHHHHHHHHHhhhHHhhhhH-HHHHHHHHHHHHHHhcccCccCCCCcchhhhhhhhcccccccccccccccHHHHHHHH
Confidence 455555566666776655331 111111 122333 4443 3344566666666
Q ss_pred HHhccCcchHHHHHHHHHH
Q 004917 366 VASGFSSDCFDLCLIKMYK 384 (724)
Q Consensus 366 l~~~~~~~~le~~LK~~Y~ 384 (724)
.-...+-..+..|-|++|.
T Consensus 543 ~L~~~p~~Sl~diakglfl 561 (823)
T KOG2147|consen 543 ALSQSPIASLQDIAKGLFL 561 (823)
T ss_pred HHHhCcchhHHHHHHHHHH
Confidence 5555555556666555554
No 18
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.44 E-value=9.8 Score=38.54 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=9.6
Q ss_pred CCCccCCchhhhcc
Q 004917 59 NGDIEDMSLEAIFS 72 (724)
Q Consensus 59 ~~~~~~m~vd~ff~ 72 (724)
+.+|...+|..+-.
T Consensus 161 ~~~~~s~~~~~~~~ 174 (227)
T KOG3241|consen 161 GDVFPSTSLEEYAN 174 (227)
T ss_pred cccccchhHHHHHh
Confidence 56677777776654
No 19
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.80 E-value=1.2e+02 Score=37.58 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=115.8
Q ss_pred hhhhhhcchH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC------------cchHHHHHHHHHHHHHh
Q 004917 326 SIVFFAAFPL-----LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS------------SDCFDLCLIKMYKAFIG 388 (724)
Q Consensus 326 llpy~~~f~k-----l~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~------------~~~le~~LK~~Y~~yv~ 388 (724)
.+-|+..||+ ++-.++..+++...++.-.|--.|=.+|-++-..-. .++.+..|...+.++-
T Consensus 480 aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s- 558 (960)
T KOG1992|consen 480 AIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS- 558 (960)
T ss_pred ccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc-
Confidence 3556777776 356777888888877665555434344444332111 3556677777774422
Q ss_pred hcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchhHHHHH-HHHHHHcc
Q 004917 389 HCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCID-LWVTYISH 467 (724)
Q Consensus 389 ~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvhsL~-~Ws~VLs~ 467 (724)
.|.. .-=.|...|+--.+++++...-.||=.-||||+-.+-..-+ +.-|=||-|-|- --+-+|-.
T Consensus 559 -----~p~~-~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K--------NPs~P~fnHYLFEsi~~li~~ 624 (960)
T KOG1992|consen 559 -----LPGK-AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK--------NPSNPQFNHYLFESIGLLIRK 624 (960)
T ss_pred -----CCcc-cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc--------CCCCchhHHHHHHHHHHHHHH
Confidence 2222 22247788888999999999999999999999988865444 445667777642 22223332
Q ss_pred cCCC-----CCccchHHHHHHHHhhhhcccCC-CcccchHHHHHHHHHHHHhcc--CcceechhHHH
Q 004917 468 CIHD-----YDLQPLLYIIIQIINGMATLFPG-PRYLPLRCKCIEWLNHLSSSS--GIFIPVTSLML 526 (724)
Q Consensus 468 ~~~~-----s~L~pLiYPLVQVi~G~irLiPt-~ry~PLRfhlir~L~~Ls~~t--~~fIPl~p~Ll 526 (724)
.|+. +.+-.=+.|+.|.++. .- --|+|.-|+++-.|+..+..| .-|-|++|+|+
T Consensus 625 t~~~~~~~vs~~e~aL~p~fq~Il~-----eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 625 TCKANPSAVSSLEEALFPVFQTILS-----EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HhccCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 3321 2355556788888763 22 479999999999999888762 45666666554
No 20
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=66.72 E-value=1.7e+02 Score=35.79 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHhHHHHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHH--HHHHhhhhhhhhhcchHH
Q 004917 259 READDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAF--SLNRLRTSIVFFAAFPLL 336 (724)
Q Consensus 259 ~~lp~~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~--~L~~l~~llpy~~~f~kl 336 (724)
+|+|+.+++.|+-... +..-.+++.-+++ +|+.|+++.+... -|..|-.-.+=+.--..+
T Consensus 297 KYvPPslRkkl~~~~~-----------sE~l~rl~rkv~g-------~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sL 358 (822)
T KOG2141|consen 297 KYVPPSLRKKLETSSE-----------SEQLQRLRRKVNG-------SLNKLSDANIIKIIAGIAELYMNNSRYDVTSSL 358 (822)
T ss_pred ccCCHHHHHHhcCccc-----------hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 5789999998873322 1111233333332 3556666654432 222332222222222556
Q ss_pred HHHHHHHHHHhhcCCCc
Q 004917 337 IRRLIKIAVHLWATGEE 353 (724)
Q Consensus 337 ~k~llK~lv~lWs~~~e 353 (724)
.+-++++++...+.-+.
T Consensus 359 tk~l~~~~~~~~~~ld~ 375 (822)
T KOG2141|consen 359 TKLLLKALLGPFRLLDS 375 (822)
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 77777777777666554
No 21
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=66.28 E-value=41 Score=30.72 Aligned_cols=63 Identities=5% Similarity=0.136 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCcc
Q 004917 333 FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPA 396 (724)
Q Consensus 333 f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~ 396 (724)
.......+++-++...+..+..||..|+-.|.+|+......++. .+-.+|-++.+-+.-++++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchh
Confidence 46677889999999999999999999999999999998777766 7778888888876665544
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=64.86 E-value=22 Score=40.51 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhc
Q 004917 311 TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHC 390 (724)
Q Consensus 311 td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~ 390 (724)
+++-+...+|+.+.. ++.+.+...++..+.++-+++...||-.|.+++.++....|..+-..++..++..+
T Consensus 91 ~n~~~~~lAL~~l~~-----i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL---- 161 (526)
T PF01602_consen 91 PNPYIRGLALRTLSN-----IRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLL---- 161 (526)
T ss_dssp SSHHHHHHHHHHHHH-----H-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHT----
T ss_pred CCHHHHHHHHhhhhh-----hcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhc----
Confidence 345677888888877 44788889999999999998888999999999999998865543222455544443
Q ss_pred ccCCccchhhhHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHhh
Q 004917 391 KFAEPALFKHLQFLRNSFVELCSQ-DLLRSSNKAKVSINNLSRILQLGL 438 (724)
Q Consensus 391 k~t~~~tl~~InfMkNs~~EL~~l-D~~~sYq~AF~yIRQLAIhLRna~ 438 (724)
+-.+ ...+.+++.=|+.+ ..+..|. ..++++..+|.+.+
T Consensus 162 ~d~~------~~V~~~a~~~l~~i~~~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 162 SDKD------PSVVSAALSLLSEIKCNDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp THSS------HHHHHHHHHHHHHHHCTHHHHT---THHHHHHHHHHHHH
T ss_pred cCCc------chhHHHHHHHHHHHccCcchhh---hhHHHHHHHhhhcc
Confidence 1111 22333333334444 3344443 45555555555543
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=62.61 E-value=1.4e+02 Score=34.08 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=76.7
Q ss_pred hhcchHHHHH-HHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHH
Q 004917 330 FAAFPLLIRR-LIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSF 408 (724)
Q Consensus 330 ~~~f~kl~k~-llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~ 408 (724)
+-.+|.+... ++..+..+-...+..|+.+|..++..+ . .+......++...|..+.+-. ..+..| ++-.+
T Consensus 142 ~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l--~~~~~~-----~q~~i 212 (526)
T PF01602_consen 142 YRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLL--SDPDPW-----LQIKI 212 (526)
T ss_dssp HHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHH--TCCSHH-----HHHHH
T ss_pred hccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcc--cccchH-----HHHHH
Confidence 3445666666 688888888667777888998888888 2 222221134444444333222 222333 33334
Q ss_pred HHHhcCCccchhHHH--HHHHHHHHHHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHh
Q 004917 409 VELCSQDLLRSSNKA--KVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIIN 486 (724)
Q Consensus 409 ~EL~~lD~~~sYq~A--F~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~ 486 (724)
+.++..-.......+ ...|..+.-.|+++-..=.-++.+.+++|.-- ..-++..+-||++.
T Consensus 213 l~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---------------~~~~~~~~~~L~~l-- 275 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---------------PELLQKAINPLIKL-- 275 (526)
T ss_dssp HHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---------------HHHHHHHHHHHHHH--
T ss_pred HHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---------------hHHHHhhHHHHHHH--
Confidence 444443233333333 55666666666633222112233333211111 11122233333322
Q ss_pred hhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004917 487 GMATLFPGPRYLPLRCKCIEWLNHLSSSS 515 (724)
Q Consensus 487 G~irLiPt~ry~PLRfhlir~L~~Ls~~t 515 (724)
+. ..-..+|+-.++.|..|++..
T Consensus 276 --L~----s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 276 --LS----SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp --HT----SSSHHHHHHHHHHHHHHCCHC
T ss_pred --hh----cccchhehhHHHHHHHhhccc
Confidence 22 223348888899999998776
No 24
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.40 E-value=10 Score=45.93 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=3.7
Q ss_pred ccCCCCc
Q 004917 71 FSEDESD 77 (724)
Q Consensus 71 f~~~~~~ 77 (724)
|.+|++.
T Consensus 858 ~e~~~e~ 864 (988)
T KOG2038|consen 858 FEFGAEK 864 (988)
T ss_pred hhcCchh
Confidence 5555554
No 25
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=59.18 E-value=31 Score=44.02 Aligned_cols=73 Identities=5% Similarity=-0.069 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhc
Q 004917 334 PLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS 413 (724)
Q Consensus 334 ~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~ 413 (724)
.-..+.+++-+.++++.=.=+|. +|.|..+.+. .++.+.|+.|=|.---.| |-|..
T Consensus 1532 EAar~~Iv~Ev~~VF~vYGIsVd------~RHLsLiADY----MTf~G~y~pfnR~Gm~~s--sSP~q------------ 1587 (1640)
T KOG0262|consen 1532 EAARNAIVNEVNNVFKVYGISVD------IRHLSLIADY----MTFEGGYQPFNRMGMESS--SSPLQ------------ 1587 (1640)
T ss_pred HHHHHHHHHHHHHhhhheeeeec------HHHHHHHHHH----HhhccccccccccccccC--CChhH------------
Confidence 33446677777777765321111 2333332221 244567777666543332 33321
Q ss_pred CCccchhHHHHHHHHHHHHH
Q 004917 414 QDLLRSSNKAKVSINNLSRI 433 (724)
Q Consensus 414 lD~~~sYq~AF~yIRQLAIh 433 (724)
..+|..++-|++|-|.+
T Consensus 1588 ---kMsFETt~~Fl~~Aa~~ 1604 (1640)
T KOG0262|consen 1588 ---KMSFETTCQFLKQAALF 1604 (1640)
T ss_pred ---hhhHHHHHHHHHHHHhc
Confidence 24677777788776654
No 26
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=55.81 E-value=1.6e+02 Score=35.67 Aligned_cols=184 Identities=12% Similarity=0.139 Sum_probs=90.7
Q ss_pred HHhhcCCcHHHHHHHHHHhhhh---hhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 004917 305 FMLNQATDSEILAFSLNRLRTS---IVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIK 381 (724)
Q Consensus 305 ~LL~~ltd~~~l~~~L~~l~~l---lpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~ 381 (724)
+.|+.-.+++++..+|.++... +||=..|. -.++--++.-+-+ -.++|+++.-||-.++.....+.-....++
T Consensus 199 qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfe---TnIieLv~~~f~s-~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r 274 (1053)
T COG5101 199 QILEYSRDESLIEATLESLLRFLEWIPLDYIFE---TNIIELVLEHFNS-MPDTRVATLSCLTEIVDLGRHPQENAEKER 274 (1053)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhCchhHHHH---HHHHHHHHHHhcc-CCchhHHHHHHHHHHHhhccCcccchhhhh
Confidence 4566668899999999888653 44333332 2333333332222 245788998999988887644443333333
Q ss_pred HHHHHHhhcccC-CccchhhhHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHhhhh------------chhhhhh
Q 004917 382 MYKAFIGHCKFA-EPALFKHLQFLRNSFVELCSQ-DLLRSSNKAKVSINNLSRILQLGLQT------------KKKEAVK 447 (724)
Q Consensus 382 ~Y~~yv~~~k~t-~~~tl~~InfMkNs~~EL~~l-D~~~sYq~AF~yIRQLAIhLRna~~~------------k~Ke~~k 447 (724)
....+.++.-+. ....+ +...-+-|.||= |.+ -=.||..||.-|-.-... ..+.+..
T Consensus 275 ~~v~~fq~i~~~~~~s~~----p~~~d~~e~Y~~~~~n-----eq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~ 345 (1053)
T COG5101 275 ILVIHFQCIEFLKMYSNK----PQEEDIYEVYGGMDKN-----EQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHG 345 (1053)
T ss_pred HHHHHHHHHHHHHHHhcc----chHHHHHHHHcccChh-----HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 333333322110 00111 122333344442 111 112344444433322210 0011111
Q ss_pred hccc-------chhHHHHHHHHHHHcccC------CCCCccchHHHHHHHHhhhhcc--cCC-CcccchHHHHH
Q 004917 448 KICS-------WQYANCIDLWVTYISHCI------HDYDLQPLLYIIIQIINGMATL--FPG-PRYLPLRCKCI 505 (724)
Q Consensus 448 ~VYN-------WQfvhsL~~Ws~VLs~~~------~~s~L~pLiYPLVQVi~G~irL--iPt-~ry~PLRfhli 505 (724)
-+.+ =-|-.||+.|..+++... +.+.+. ||+|+..|+--+ .|+ ..-+|||=|+-
T Consensus 346 YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~----Pli~ls~~s~~istnpn~~~~~pLrkhiY 415 (1053)
T COG5101 346 YLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMS----PLIQLSVGSQAISTNPNQDSTKPLRKHIY 415 (1053)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----cchhccccchhccCCcchhcccchHHHHH
Confidence 0000 016679999999998633 223344 677888776544 443 35689998863
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=6.1e+02 Score=32.93 Aligned_cols=238 Identities=14% Similarity=0.102 Sum_probs=155.2
Q ss_pred hcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCH-HHHHHHHHHHHHHhHHHH-------HHHhCCcCCCCCcc
Q 004917 208 EQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDC-ETFCKILMFVLREADDVF-------REMLGISSNCKRDT 279 (724)
Q Consensus 208 ~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~-~VFn~vv~~~L~~lp~~l-------~~~l~~k~~~~k~~ 279 (724)
++.+=+.+|.++.+.+.-.+.-+- ..|...++ ..|..++.+++..-|.+= ...|.-+..
T Consensus 105 ~stn~svlr~~iscL~~lLraQd~--------~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~----- 171 (1176)
T KOG1248|consen 105 ESTNGSVLRLAISCLEDLLRAQDA--------SAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPF----- 171 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHcch--------hhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCC-----
Confidence 466778888888888877765221 23443332 346677777776666542 122211110
Q ss_pred ccccCCCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchH-HHHHHHHHHHHhhcCCCchhHHH
Q 004917 280 ILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPL-LIRRLIKIAVHLWATGEETVSFH 358 (724)
Q Consensus 280 ~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~k-l~k~llK~lv~lWs~~~e~vrv~ 358 (724)
...+..|.+.+=..=.+.+++..-.+...+-+++.|.=+--.+.+||. +.+.+...++.+.+.+.--++..
T Consensus 172 --------~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~ 243 (1176)
T KOG1248|consen 172 --------APDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLE 243 (1176)
T ss_pred --------CccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 111225666666666677776665566677777777665555666886 77888899999988888889999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHH--HHH-HHHhcCCccchhHHHHHH---------
Q 004917 359 SFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLR--NSF-VELCSQDLLRSSNKAKVS--------- 426 (724)
Q Consensus 359 AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMk--Ns~-~EL~~lD~~~sYq~AF~y--------- 426 (724)
+|-|+..+....+. .+...+-..-++-+.--+......++.+-||+ |-+ .=|-.+++..+-|+.+..
T Consensus 244 ~~q~l~~lf~~~~~-~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~ 322 (1176)
T KOG1248|consen 244 VLQCLHSLFKKHPT-ALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILE 322 (1176)
T ss_pred HHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHh
Confidence 99999999987655 77777777777777777787778888887763 222 233345777777765443
Q ss_pred --HHHHHHHHHHhhhhchhh-----------hhhhcccchhHHHHHHHHHHHcc
Q 004917 427 --INNLSRILQLGLQTKKKE-----------AVKKICSWQYANCIDLWVTYISH 467 (724)
Q Consensus 427 --IRQLAIhLRna~~~k~Ke-----------~~k~VYNWQfvhsL~~Ws~VLs~ 467 (724)
++|++.-.+++++.=-++ .+-...+..|-+|-++--+++|+
T Consensus 323 s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~ 376 (1176)
T KOG1248|consen 323 SLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSA 376 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 388888888888642222 24444556677776666666765
No 28
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=53.42 E-value=22 Score=41.50 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=9.3
Q ss_pred CCCCccCCchhhhcc
Q 004917 58 ENGDIEDMSLEAIFS 72 (724)
Q Consensus 58 ~~~~~~~m~vd~ff~ 72 (724)
+...+.||+.|+--.
T Consensus 228 ~e~~~~dl~~d~~~~ 242 (555)
T KOG2393|consen 228 KENSIADLEIDEAES 242 (555)
T ss_pred ccccccccccchhhh
Confidence 455677777766544
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.11 E-value=4.1e+02 Score=34.21 Aligned_cols=339 Identities=17% Similarity=0.195 Sum_probs=184.7
Q ss_pred CcchhhhHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhh----cCC--CchhHH
Q 004917 287 SKWKTVRPLIKSYLRSTLFMLNQA---TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLW----ATG--EETVSF 357 (724)
Q Consensus 287 ~kw~kl~~liKsyl~sll~LL~~l---td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lW----s~~--~e~vrv 357 (724)
.-|++++.+ +-++++.|..+ .|.+.+..+|..+.. ++...|++++..+..++.+- ... ++.+|.
T Consensus 195 ~~~~~~~~l----lP~~l~vl~~~i~~~d~~~a~~~l~~l~E---l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 195 SEVDKFRDL----LPSLLNVLQEVIQDGDDDAAKSALEALIE---LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHHH----hHHHHHHhHhhhhccchHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344444444 45555555444 445667777766654 55778888888777777654 333 357998
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhc-----------CC-ccchhHHHHH
Q 004917 358 HSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS-----------QD-LLRSSNKAKV 425 (724)
Q Consensus 358 ~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~-----------lD-~~~sYq~AF~ 425 (724)
.|--+|-.++...+ ..||.-.+-.-+.+--+--+.+|+-. -| .+.-|.+|=.
T Consensus 268 ~ALe~ivs~~e~Ap----------------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~ 331 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAP----------------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ 331 (1075)
T ss_pred HHHHHHHHHHHhhH----------------HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence 88777766554321 11222221122222222233333221 12 2568999999
Q ss_pred HHHHHHHHHHHhhhh-c---hhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchH
Q 004917 426 SINNLSRILQLGLQT-K---KKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLR 501 (724)
Q Consensus 426 yIRQLAIhLRna~~~-k---~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLR 501 (724)
.|=.||.||=....- . --+.+-.=-+|+|-|.-=+=-.|++.-|++ .+.+.+-+++++++.-++= |.+| -|
T Consensus 332 ~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~D-phpr---Vr 406 (1075)
T KOG2171|consen 332 ALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLND-PHPR---VR 406 (1075)
T ss_pred HHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcCC-CCHH---HH
Confidence 999999999744331 1 123444456999999987777888876653 5777888888888765543 5554 35
Q ss_pred HHHHHHHHHHHhccCccee------chhHHHHhhccccccCC--CCCCCCCCcccccccchhhh----------------
Q 004917 502 CKCIEWLNHLSSSSGIFIP------VTSLMLDVLEYKVSKEV--GKPGKDFNFSSAVKLPKHWL---------------- 557 (724)
Q Consensus 502 fhlir~L~~Ls~~t~~fIP------l~p~LleiL~s~~~k~~--~~~~k~~Df~~~lk~~k~~l---------------- 557 (724)
.-++-++-++|..=...|= +.|.|+.++++...-+- ....--++|. =.|+++.+
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~--E~~~~~~l~pYLd~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS--EECDKSILEPYLDGLMEKKLLLLL 484 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHHHHHHh
Confidence 5566666665543222111 34567777776433110 0000011111 12222221
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Q 004917 558 --KSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEV 635 (724)
Q Consensus 558 --~t~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~~~I~~kR~~v 635 (724)
+++..|+.++..+.. +..+.--.|-.++--++-.|+.++.++... -.+.|-.|.-+.+.-|...=.+-
T Consensus 485 ~~~~~~v~e~vvtaIas------vA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~----d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 485 QSSKPYVQEQAVTAIAS------VADAAQEKFIPYFDRLMPLLKNFLQNADDK----DLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred cCCchhHHHHHHHHHHH------HHHHHhhhhHhHHHHHHHHHHHHHhCCCch----hhHHHHhhHHHHHHHHHHHhhhh
Confidence 222333333322111 122333455555555667899999887743 34455566677777777666667
Q ss_pred CCCCCCHHHHHHHHHh---hhcCCCCchHHHHHH
Q 004917 636 AFSPNDQQSVEAFLQL---EKCSGNTPFTQYYRS 666 (724)
Q Consensus 636 ~F~P~d~~~V~~Fl~~---~~~~~~tPL~~y~~~ 666 (724)
.|.|--..=+.--+.. +. ...-|+..|.-+
T Consensus 555 ~F~~~a~eliqll~~~~~~~~-~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQ-DDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccch-hhccccHHHHHH
Confidence 7888754433333322 12 245677777554
No 30
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=49.58 E-value=37 Score=40.33 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=66.4
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHHhhcccCCccchhhhHH
Q 004917 326 SIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDC--FDLCLIKMYKAFIGHCKFAEPALFKHLQF 403 (724)
Q Consensus 326 llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~--le~~LK~~Y~~yv~~~k~t~~~tl~~Inf 403 (724)
+-.|+-.||.+...-+.+++.|.-..+..||+.|.=-|=.+|+.-+.-+ +-.||-++.. ..--.-++.
T Consensus 46 I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~----------tdd~~E~~~ 115 (556)
T PF05918_consen 46 IPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ----------TDDPVELDA 115 (556)
T ss_dssp HHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT-------------HHHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh----------cccHHHHHH
Confidence 4568999999999999999999998888899999877777777643222 3334444333 244456788
Q ss_pred HHHHHHHHhcCCccchhHHHHHHHH
Q 004917 404 LRNSFVELCSQDLLRSSNKAKVSIN 428 (724)
Q Consensus 404 MkNs~~EL~~lD~~~sYq~AF~yIR 428 (724)
.+|++++|+-+|+..+-.-.|.-|.
T Consensus 116 v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 116 VKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8999999999999999999998886
No 31
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=48.66 E-value=15 Score=36.85 Aligned_cols=26 Identities=46% Similarity=0.574 Sum_probs=17.8
Q ss_pred CCcchhhhhhhHh-hhchHHHHHHHHhHH
Q 004917 1 MGKLGKKARKFAK-KNLQSVLKRKRKIKS 28 (724)
Q Consensus 1 m~k~~K~tkkF~~-k~L~~~~~~rk~~k~ 28 (724)
|||. |||+||+- ||+.++. +|.+.++
T Consensus 1 mgk~-kktrk~~~vk~~i~~k-~~~~~~d 27 (195)
T KOG3165|consen 1 MGKA-KKTRKFAVVKRMIKTK-QRLKKKD 27 (195)
T ss_pred CCcc-cchHHHHHHHHHHHHH-HHHHHHH
Confidence 8886 47899994 6777666 5554455
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=63 Score=38.37 Aligned_cols=174 Identities=16% Similarity=0.253 Sum_probs=90.7
Q ss_pred HHHHhhcCCcH--HHHHHHHHHhhhhhhhhhcchH--HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 004917 303 TLFMLNQATDS--EILAFSLNRLRTSIVFFAAFPL--LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLC 378 (724)
Q Consensus 303 ll~LL~~ltd~--~~l~~~L~~l~~llpy~~~f~k--l~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~ 378 (724)
...||++++|+ +++..+|.=+..+ +..++ -.++|++.+++++....--++.-+=+.||++|........=..
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i----~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~ 454 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASI----CSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRS 454 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHH----hcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHH
Confidence 45678888774 3444444333321 11111 3489999999999986666778888999999998765432222
Q ss_pred HHHHHHHHHhhcccCCccch-hhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcc-cch---
Q 004917 379 LIKMYKAFIGHCKFAEPALF-KHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKIC-SWQ--- 453 (724)
Q Consensus 379 LK~~Y~~yv~~~k~t~~~tl-~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VY-NWQ--- 453 (724)
+-.+-.. ..|-+|.+ || ...|-.-=+..||| ||--.||+.-+-+.++-|..+| +|.
T Consensus 455 ~a~ILe~-e~nl~FAs--tMV~~Ln~iLlTStELf----------------~LR~~Lk~lsn~es~~lF~cLy~sWchnP 515 (675)
T KOG0212|consen 455 IADILER-EENLKFAS--TMVQALNTILLTSTELF----------------QLRNKLKDLSNEESQNLFCCLYRSWCHNP 515 (675)
T ss_pred HHHHHhc-cccchHHH--HHHHHHHhhhcccHHHH----------------HHHHHHHhccChhhhHHHHHHHHHHcCCc
Confidence 2222111 22333321 11 11122222334554 3333444444444556666666 454
Q ss_pred ------------hHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHH
Q 004917 454 ------------YANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEW 507 (724)
Q Consensus 454 ------------fvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~ 507 (724)
|-|.-++-..+-- ..+. +--|||+= -.++|+-+|-|-+||++++..
T Consensus 516 va~~SLClLtQnYqhA~~liq~fa~-----~eit--vd~L~elD-KLVqLiEsPIFtylRLqLLe~ 573 (675)
T KOG0212|consen 516 VATLSLCLLTQNYQHAYDLIQLFAD-----VEIT--VDFLVELD-KLVQLIESPIFTYLRLQLLEP 573 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----hhhh--HHHHHHHH-HHHHHHhcchHHHHHHHHhcc
Confidence 6666544322211 0110 11233432 234677889999999998754
No 33
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=44.19 E-value=2.6e+02 Score=27.21 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=64.6
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHH
Q 004917 303 TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKM 382 (724)
Q Consensus 303 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~ 382 (724)
+-.+++.+|. +.+..+...+.. ++..-+.....+++.++..|-....-+.. |..|-.......+.+...++..+
T Consensus 4 v~~~lnkLs~-~n~~~~~~~l~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--ya~L~~~l~~~~~~f~~~ll~~~ 77 (200)
T smart00543 4 VKGLINKLSP-SNFESIIKELLK---LNNSDKNLRKYILELIFEKAVEEPNFIPA--YARLCALLNAKNPDFGSLLLERL 77 (200)
T ss_pred HHHHHhhCCH-HHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677774 344444444443 22334678888999999888775543332 22222222222246777788888
Q ss_pred HHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004917 383 YKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 431 (724)
Q Consensus 383 Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 431 (724)
+..|-..........+....-.-+.++|||....-... ..|..|++|-
T Consensus 78 ~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~-~i~~~l~~ll 125 (200)
T smart00543 78 QEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSK-IILELLKELL 125 (200)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHH-HHHHHHHHHH
Confidence 88776642222222333333344556788776543222 4555555554
No 34
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.94 E-value=1.4e+02 Score=29.49 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=59.9
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHH--------HHHHHHhhcCCCchhHHHHH
Q 004917 289 WKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRL--------IKIAVHLWATGEETVSFHSF 360 (724)
Q Consensus 289 w~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~l--------lK~lv~lWs~~~e~vrv~AF 360 (724)
|..+..--..++..++.+|++-....+...++..+..++.+...+|-+.|++ +..++.+-.. ..+...+.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l 135 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETAL 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHH
Confidence 6777677788899999999997778899999999999999999999988775 3334443332 23444444
Q ss_pred HHHHHHHhccCcch
Q 004917 361 LILQDVASGFSSDC 374 (724)
Q Consensus 361 l~Lr~l~~~~~~~~ 374 (724)
-+|..+...++..|
T Consensus 136 ~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 136 DALATLLPHHPTTF 149 (165)
T ss_pred HHHHHHHHHCCccc
Confidence 55555555555443
No 35
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=43.20 E-value=21 Score=39.95 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=16.1
Q ss_pred CCcchhh-hhhhHhhhchHHHHHHHHhHHHH
Q 004917 1 MGKLGKK-ARKFAKKNLQSVLKRKRKIKSTF 30 (724)
Q Consensus 1 m~k~~K~-tkkF~~k~L~~~~~~rk~~k~~~ 30 (724)
||+++|+ .+|-..-.|-+-|..-+..++++
T Consensus 1 m~~~~k~~~~~~~~~pl~kdl~a~~va~~k~ 31 (449)
T KOG3871|consen 1 MARMKKAKDRKQRHAPLLKDLAAGQVAKKKK 31 (449)
T ss_pred CCCcccCccchhccCchhhhhHHHhhhhhhh
Confidence 7888776 44433335555555544444433
No 36
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=42.57 E-value=4.9e+02 Score=28.45 Aligned_cols=210 Identities=12% Similarity=0.009 Sum_probs=100.7
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 004917 299 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLC 378 (724)
Q Consensus 299 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~ 378 (724)
-+..++-++..=++...+...+..+...+.++ -..+.+.+++.+..=.+.....+|-+-|.++..+.......-....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 34556667777777777777777776665555 2344455556555533444455888888777776651111112222
Q ss_pred HHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHH----------HHHHHHHHhhhhchhhhhh-
Q 004917 379 LIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSIN----------NLSRILQLGLQTKKKEAVK- 447 (724)
Q Consensus 379 LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIR----------QLAIhLRna~~~k~Ke~~k- 447 (724)
...+.-.++...+.+..+.+|. .++..+-.||.++- + .....+++....|.+|-
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~~--------------~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~l~~~~kps~ll 165 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQS--------------AQNGELVGAYVLLALSSWKLDKIDS-KNISFWSLALDPKPSFLL 165 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc--------------cccccHHHHHHHHHhccccchhhhh-hhhhhhhhccCCCcchhc
Confidence 2222222222222211111111 11122334444444 1 33333444433333321
Q ss_pred --hcccc-----hhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCccee
Q 004917 448 --KICSW-----QYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIP 520 (724)
Q Consensus 448 --~VYNW-----QfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~fIP 520 (724)
.||+= -.+..+++-..++..+... ....-..|+-|..+.++-- |+ -=.+.|-+++..|-++.......
T Consensus 166 ~~kvyskl~~~~d~~w~~~al~~~~~~~~~~-~~~~~~~~~~~a~i~ll~s-~~-~~~~vR~~A~~~l~~l~~~~~~~-- 240 (339)
T PF12074_consen 166 SEKVYSKLASEEDLCWLLRALEALLSDHPSE-LSSDKSSAWAQAFIYLLCS-SN-VSWKVRRAALSALKKLYASNPEL-- 240 (339)
T ss_pred CHHHHhccCCHhHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHHHHhChHH--
Confidence 12211 0222334444444433211 1111134555554443321 21 13568999999999998877776
Q ss_pred chhHHHHhhc
Q 004917 521 VTSLMLDVLE 530 (724)
Q Consensus 521 l~p~LleiL~ 530 (724)
+...|++-|.
T Consensus 241 l~~~li~~l~ 250 (339)
T PF12074_consen 241 LSKSLISGLW 250 (339)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 37
>PHA02734 coat protein; Provisional
Probab=42.37 E-value=86 Score=30.22 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 004917 562 FREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRD 633 (724)
Q Consensus 562 yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~~~I~~kR~ 633 (724)
+...-...++.+|..|+ +.-|+|||+++ =+.--..+++.+..+.....|+.+|..|.+-.+=.+.+-.
T Consensus 7 kKgdYagg~~kiL~~F~---~G~iGyPevsL-RLAGEEAn~~~~G~e~~k~aIHeiIK~IreA~kp~rn~g~ 74 (149)
T PHA02734 7 KKGDYAGGAAKILDGFE---AGQLGFPEVSL-KLAGEEANARKAGDANAKAAIHAIIKMIKDAMKPLRNKGK 74 (149)
T ss_pred cchhHHHHHHHHHHHHH---cCCCCCceeeh-hhhhhHhhhcccChHHHHHHHHHHHHHHHHHhhhhhhcCC
Confidence 33444556778998885 57899999984 3444556667777778888999999999888876665543
No 38
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=42.20 E-value=79 Score=30.23 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHH-H-HHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004917 302 STLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRL-I-KIAVHLWATGEETVSFHSFLILQDVAS 368 (724)
Q Consensus 302 sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~l-l-K~lv~lWs~~~e~vrv~AFl~Lr~l~~ 368 (724)
.|+.+|..-+|+.++++++.-|..++.++=.-+.++..+ . -.+..+-+.++..||--|-+++.+++.
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455677666789999999999999888874444444222 1 245677788888899999999998875
No 39
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.04 E-value=3.4e+02 Score=34.80 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 004917 191 NKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACH 227 (724)
Q Consensus 191 ~~~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~ 227 (724)
.+..+.++|+.|-..-++ .+-.++-.+++-|=.||-
T Consensus 90 ~k~~i~~lv~~W~e~Yk~-n~~~al~~linf~l~~cG 125 (1048)
T KOG2011|consen 90 SKSPIEELVDEWIEDYKE-NRDKALLELINFFLQCCG 125 (1048)
T ss_pred ccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhcC
Confidence 344588999999998865 489999999999998883
No 40
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.61 E-value=3.5e+02 Score=30.22 Aligned_cols=115 Identities=11% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHh------hhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004917 294 PLIKSYLRSTLFMLNQATDSEILAFSLNRL------RTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 367 (724)
Q Consensus 294 ~liKsyl~sll~LL~~ltd~~~l~~~L~~l------~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~ 367 (724)
.-+.-||.-++.-|-.-++.+|-...|.+| ++++|||+.|-. -++. +++
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~--eqit----------------------~Nl- 247 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFN--EQIT----------------------KNL- 247 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH--HHHH----------------------Hhh-
Confidence 334457777777775556777766677765 479999998853 1111 111
Q ss_pred hccCcchHHHHHHHHHHHHHhhc-ccCCccchhhhHHHHHHHHH-HhcCCccchhHHHHHHHHHHHHHHHHhhh
Q 004917 368 SGFSSDCFDLCLIKMYKAFIGHC-KFAEPALFKHLQFLRNSFVE-LCSQDLLRSSNKAKVSINNLSRILQLGLQ 439 (724)
Q Consensus 368 ~~~~~~~le~~LK~~Y~~yv~~~-k~t~~~tl~~InfMkNs~~E-L~~lD~~~sYq~AF~yIRQLAIhLRna~~ 439 (724)
..-..=+.+--||.++++|- =|+.|---..+--.-.|++- =.|-+|+- |-|--.|.+|..|-.-+-
T Consensus 248 ---~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~d---he~~alRd~AA~ll~yV~ 315 (450)
T COG5095 248 ---KNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDD---HEHYALRDVAADLLKYVF 315 (450)
T ss_pred ---hhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHHHHHH
Confidence 01011112225677777664 34554332222233455553 34444443 777778888877654443
No 41
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.68 E-value=4.3e+02 Score=32.93 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHhhcC-CcHH--------------------------------HHHHHHHHhhhhhhhhhcchHHHH
Q 004917 292 VRPLIKSYLRSTLFMLNQA-TDSE--------------------------------ILAFSLNRLRTSIVFFAAFPLLIR 338 (724)
Q Consensus 292 l~~liKsyl~sll~LL~~l-td~~--------------------------------~l~~~L~~l~~llpy~~~f~kl~k 338 (724)
...||..||.=.-.++... ++.. |+..+|+.+....||.-.--....
T Consensus 417 AnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~ 496 (988)
T KOG2038|consen 417 ANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLE 496 (988)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHH
Confidence 4678888888766666443 3333 999999999999999888776777
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHH
Q 004917 339 RLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFV 409 (724)
Q Consensus 339 ~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~ 409 (724)
.=+++|..|--+++=.|.|.|...|-.+.... .-+-+.-.++.|+.++-+.=-++...--.+|+|-.++.
T Consensus 497 ~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~-~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK 566 (988)
T KOG2038|consen 497 EQMKTLFKLTHSSNFNTSVQALMLLFQVSKKN-DYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLK 566 (988)
T ss_pred HHhHHHHHHHhhcccchhHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHH
Confidence 88888888877777778899988888877653 44556667777777665533333223334666655554
No 42
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.34 E-value=2.5e+02 Score=28.62 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=65.5
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhh---hhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004917 289 WKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLR---TSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQD 365 (724)
Q Consensus 289 w~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~---~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~ 365 (724)
-.++...|+.-=..+++.|..-++..++..+|+-+. ...||=-.-+.++..+++.+-.+....+-+++++++.|+.-
T Consensus 92 S~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 92 SSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 356778888888888999988888888888777665 45677766677888888888888888888999999999987
Q ss_pred HHhcc
Q 004917 366 VASGF 370 (724)
Q Consensus 366 l~~~~ 370 (724)
+....
T Consensus 172 l~s~~ 176 (182)
T PF13251_consen 172 LLSVQ 176 (182)
T ss_pred HHcCC
Confidence 76543
No 43
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.05 E-value=4.5e+02 Score=32.83 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred HHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHH---------hhc-C------CcHHHHHHHHHHhhhhhh
Q 004917 265 FREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFM---------LNQ-A------TDSEILAFSLNRLRTSIV 328 (724)
Q Consensus 265 l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~L---------L~~-l------td~~~l~~~L~~l~~llp 328 (724)
+-|||||+..-|...-+++..+.+|.-=+ --||+..+.| |.+ + ++.=++.+.|+.|..
T Consensus 60 Yi~MLGypahFGqieclKLias~~f~dKR---iGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~--- 133 (866)
T KOG1062|consen 60 YIHMLGYPAHFGQIECLKLIASDNFLDKR---IGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGN--- 133 (866)
T ss_pred HHHHhCCCccchhhHHHHHhcCCCchHHH---HHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhc---
Confidence 34899999876654444555555542111 1355544333 322 1 112256667777766
Q ss_pred hhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHH
Q 004917 329 FFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSF 408 (724)
Q Consensus 329 y~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~ 408 (724)
++.|-++|.+.-.+.++.....+-+|=-|-+|.-++.+.- ++.++..+-..-..+-.+-.-|=..++ .+ +
T Consensus 134 --i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l---~l----~ 203 (866)
T KOG1062|consen 134 --ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGL---HL----I 203 (866)
T ss_pred --cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHH---HH----H
Confidence 5679999999999999999988889988888877776654 334443332222211111111211222 21 3
Q ss_pred HHHhcCCc-cchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccch-----hHHH--HHHHHHHHcccCCCCCccchHHH
Q 004917 409 VELCSQDL-LRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQ-----YANC--IDLWVTYISHCIHDYDLQPLLYI 480 (724)
Q Consensus 409 ~EL~~lD~-~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQ-----fvhs--L~~Ws~VLs~~~~~s~L~pLiYP 480 (724)
.|||.+++ .+.|-.- -.++|-..||+-.+.+ |..=||.+ |+|+ |+| -++|.+.- ..-..+.+-
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~----yspeydv~gi~dPFLQi~iLrl-LriLGq~d--~daSd~M~D 274 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSG----YSPEYDVHGISDPFLQIRILRL-LRILGQND--ADASDLMND 274 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCC----CCCccCccCCCchHHHHHHHHH-HHHhcCCC--ccHHHHHHH
Confidence 47777755 3333222 5688888899887752 33334433 5554 443 34555432 122223332
Q ss_pred -HHHHHh
Q 004917 481 -IIQIIN 486 (724)
Q Consensus 481 -LVQVi~ 486 (724)
|.||+.
T Consensus 275 iLaqvat 281 (866)
T KOG1062|consen 275 ILAQVAT 281 (866)
T ss_pred HHHHHHh
Confidence 566655
No 44
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=35.46 E-value=3.7e+02 Score=26.06 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhc-chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 004917 303 TLFMLNQATDSEILAFSLNRLRTSIVFFAA-FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIK 381 (724)
Q Consensus 303 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~-f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~ 381 (724)
+-.+|+.+|+..+- .+...+.. +... -+...+.+++.++..|......+.+.|=+| ..+....+..|...++..
T Consensus 4 v~~~lnklt~~n~~-~~~~~l~~---~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~-~~l~~~~~~~f~~~ll~~ 78 (209)
T PF02854_consen 4 VRGILNKLTPSNFE-SIIDELIK---LNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLC-AALNSRFPSEFRSLLLNR 78 (209)
T ss_dssp HHHHHHHCSSTTHH-HHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHH-HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHH-HHHHHHHH---HHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHH-HHHhccchhhHHHHHHHH
Confidence 44566777743332 23333322 2233 477888899999888887665555444333 224444435788888888
Q ss_pred HHHHHHhhc-----ccCCccchhhhHHHHHHHHHHhcCCc
Q 004917 382 MYKAFIGHC-----KFAEPALFKHLQFLRNSFVELCSQDL 416 (724)
Q Consensus 382 ~Y~~yv~~~-----k~t~~~tl~~InfMkNs~~EL~~lD~ 416 (724)
++..|-... ............-.-.-++|||....
T Consensus 79 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~v 118 (209)
T PF02854_consen 79 CQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGV 118 (209)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhcc
Confidence 888888722 11111222222233345667776543
No 45
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=34.49 E-value=33 Score=39.60 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.1
Q ss_pred ccCCchhhhccCC
Q 004917 62 IEDMSLEAIFSED 74 (724)
Q Consensus 62 ~~~m~vd~ff~~~ 74 (724)
...|.+-.-++++
T Consensus 213 l~sm~~ae~~~~d 225 (620)
T COG4547 213 LGSMDMAEETGDD 225 (620)
T ss_pred hcccccccccCCC
Confidence 3445554445443
No 46
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=34.47 E-value=48 Score=39.89 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhcccC
Q 004917 218 LLNAYRAACHYGAES 232 (724)
Q Consensus 218 lv~AFRaA~~~~~e~ 232 (724)
-+.+|.-|...+.++
T Consensus 220 a~~~y~La~~l~r~~ 234 (622)
T PF02724_consen 220 AVLMYELASSLGRDD 234 (622)
T ss_pred HHHHHHHHHHhCCCc
Confidence 345566666666543
No 47
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=33.99 E-value=24 Score=44.74 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHhhcCChhhhHhhhhhC
Q 004917 76 SDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHD 155 (724)
Q Consensus 76 ~~~~~~~~~~~~s~s~~~~~e~~~~~~~~~se~~~~~~~~~~~~~~~~~~~~~d~~~hk~~L~~LkekDPEFyKyL~enD 155 (724)
|...|++..+|+.|+|+++++|+++..++++|| +++++.+++.
T Consensus 1729 ef~GEed~~Dddnddddddd~EaEdddDddDdD--------------deD~d~~aea----------------------- 1771 (3015)
T KOG0943|consen 1729 EFAGEEDHHDDDNDDDDDDDAEAEDDDDDDDDD--------------DEDMDLDAEA----------------------- 1771 (3015)
T ss_pred cccCcccccccccccccccchhhcccccccccc--------------ccccccchhh-----------------------
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCCCC
Q 004917 156 KGLKSFRNENAYSDEDERSDDGMQSMDEDGP 186 (724)
Q Consensus 156 ~eLL~F~~~~~~~d~de~~~de~~~~~~~~~ 186 (724)
..++++|+++++..++..-+++
T Consensus 1772 ---------~aEdEe~eEgdeheQDeqvege 1793 (3015)
T KOG0943|consen 1772 ---------AAEDEEDEEGDEHEQDEQVEGE 1793 (3015)
T ss_pred ---------hhcccccccccccccccccccc
No 48
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=33.54 E-value=83 Score=27.01 Aligned_cols=32 Identities=3% Similarity=0.123 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004917 193 LLTSSAINSWCHLVKEQHNASAFISLLNAYRA 224 (724)
Q Consensus 193 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRa 224 (724)
.+|.+||+.--.++-.+||-+-++++..+.+.
T Consensus 31 pine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 31 PINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 48999999999999999999999999887654
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=2.6e+02 Score=34.64 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHhhhhhhhhh-cchH-HHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHH-HHHHHHHH
Q 004917 311 TDSEILAFSLNRLRTSIVFFA-AFPL-LIR-RLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLC-LIKMYKAF 386 (724)
Q Consensus 311 td~~~l~~~L~~l~~llpy~~-~f~k-l~k-~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~-LK~~Y~~y 386 (724)
|++.+=-..++.|...+-|.- -|.+ .-| -++..+++.|..++..++++||-||.+|+..+ ..+++.- ...+|.-+
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444444445556655555543 2222 222 34567889999999999999999999999876 3333332 22244444
Q ss_pred HhhcccCC-ccchhhhHHHHHHHH
Q 004917 387 IGHCKFAE-PALFKHLQFLRNSFV 409 (724)
Q Consensus 387 v~~~k~t~-~~tl~~InfMkNs~~ 409 (724)
+..-|..+ .-.+.+|.|-.+-.-
T Consensus 265 l~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44444332 246778888765443
No 50
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.07 E-value=1.2e+03 Score=31.32 Aligned_cols=239 Identities=18% Similarity=0.183 Sum_probs=116.1
Q ss_pred hhhhhcchHHHHHHHHHHHHhhcCCC-c-hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-hhcc--cCCccchhhh
Q 004917 327 IVFFAAFPLLIRRLIKIAVHLWATGE-E-TVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFI-GHCK--FAEPALFKHL 401 (724)
Q Consensus 327 lpy~~~f~kl~k~llK~lv~lWs~~~-e-~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv-~~~k--~t~~~tl~~I 401 (724)
.|=.-+-..++..|.+.+|+..+.-. + ++|++|-=.|-.++........+.-|-+ +-| ++.. .-+++..+ +
T Consensus 616 ~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~IaarLrkd~v~s~l~~---g~v~~~~~~~s~~~~~~k-~ 691 (1692)
T KOG1020|consen 616 LPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAARLRKDAVLSKLEQ---GSVDRELDQDSEEKHNIK-L 691 (1692)
T ss_pred CCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhhhhcccccccch-h
Confidence 45555557888999999999998643 3 6888887776666554433332221111 111 1111 11233333 3
Q ss_pred HHHHHHHHHHhcCCc-cchhHHHHH---HH----HHHHHHHHHhhhhch-hhhhhhcccchhHHHHHHHHHHHcccCCCC
Q 004917 402 QFLRNSFVELCSQDL-LRSSNKAKV---SI----NNLSRILQLGLQTKK-KEAVKKICSWQYANCIDLWVTYISHCIHDY 472 (724)
Q Consensus 402 nfMkNs~~EL~~lD~-~~sYq~AF~---yI----RQLAIhLRna~~~k~-Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s 472 (724)
.+.++.+...+.... ..+|...|. || |.++--.+.+|..++ -++-..+..| .++.+|-+-+.+.- .
T Consensus 692 ~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~kd~~s~~~~~~~---~~~el~~~~v~~~~--n 766 (1692)
T KOG1020|consen 692 IVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIMEENKDVDSNEGTHHW---FSFELAYEKVITVE--N 766 (1692)
T ss_pred hhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHHHhccCccccccchhH---HHHHHHHHHHhhhH--H
Confidence 445556665555433 334443332 33 444555555555433 2222333334 34567777666421 1
Q ss_pred CccchHHHHHHHHhhh-hcccC--CCccc--chHHHHHHHHHHHHhccCcceechhHHHHhhccccccCCCCCCCCCCcc
Q 004917 473 DLQPLLYIIIQIINGM-ATLFP--GPRYL--PLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFS 547 (724)
Q Consensus 473 ~L~pLiYPLVQVi~G~-irLiP--t~ry~--PLRfhlir~L~~Ls~~t~~fIPl~p~LleiL~s~~~k~~~~~~k~~Df~ 547 (724)
.++ |=+-+|--+- .+.-| +.+|. -=-.++.+.|..-+.=+..|=|.+.+|+-+|.....+-..+.+|.+ +
T Consensus 767 ~~K---~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKcl--S 841 (1692)
T KOG1020|consen 767 ELK---YILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCL--S 841 (1692)
T ss_pred HHH---HHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHH--H
Confidence 111 1122221110 00001 11121 1224555666655555666777777777777653321112223322 2
Q ss_pred cccccchhhhcchhhHHHH-----------HHHHHHHHHHHHH
Q 004917 548 SAVKLPKHWLKSRNFREDC-----------VFSAIELLSAHFA 579 (724)
Q Consensus 548 ~~lk~~k~~l~t~~yqd~v-----------~e~~~eLL~e~~~ 579 (724)
..+-+++..|..+..|.+| .+.+++|++.|..
T Consensus 842 ~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 842 MIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 3445556666666666554 4667888886654
No 51
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=30.55 E-value=7.6e+02 Score=31.48 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhc--------CCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 004917 314 EILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWA--------TGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKA 385 (724)
Q Consensus 314 ~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs--------~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~ 385 (724)
++++.+++=|..++|++-. ++|+ .+....-.++-++=.-=...+..+++-.|+ +++.+
T Consensus 601 ~ll~scl~fL~aL~p~~p~-------------rVW~~L~rS~LL~~~g~~G~~s~ilgs~E~~~G~Y~ftls~l-kL~~~ 666 (931)
T PF10487_consen 601 ELLTSCLRFLTALLPIFPG-------------RVWSYLSRSSLLGSDGKGGLASVILGSIEMVSGRYDFTLSLL-KLFSA 666 (931)
T ss_pred HHHHHHHHHHHHHhccChH-------------HHHHHHhhCcCcccCCccchHHHhhhhhhccCCcchHHHHHH-HHHHH
Q ss_pred HHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchh----------H
Q 004917 386 FIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQY----------A 455 (724)
Q Consensus 386 yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQf----------v 455 (724)
+|.+|-. .+..+.-...=.-+..++.|++ |-|.+-++|.| .
T Consensus 667 Lv~~als---------------------~~~~~~~~~~~~vL~~~~~~l~--------eVfes~~~Wrf~~~~qR~eIg~ 717 (931)
T PF10487_consen 667 LVDDALS---------------------SNSGVPSKTKSVVLPKIVFHLV--------EVFESFSTWRFNSPGQRFEIGR 717 (931)
T ss_pred HHHHhhc---------------------cCCCCchhHHHHHHHHHHHHHH--------HHhhcCCceeCCChhhHHHHHH
Q ss_pred HHHHHHHHHHcccC-----------------------------CCCCccchHHHHHHHHhhhhcccCCCcccch------
Q 004917 456 NCIDLWVTYISHCI-----------------------------HDYDLQPLLYIIIQIINGMATLFPGPRYLPL------ 500 (724)
Q Consensus 456 hsL~~Ws~VLs~~~-----------------------------~~s~L~pLiYPLVQVi~G~irLiPt~ry~PL------ 500 (724)
+++.+-+++|...+ ..+...+...||+.++.+ ..-.+...+.+.
T Consensus 718 ~i~~~f~~IL~~~ygi~~~~~~~~klt~vl~~aa~~il~~fl~~~s~~~~~~~pll~~l~~-~~~~~~~~~~~~~~~~~~ 796 (931)
T PF10487_consen 718 SILSIFSKILYYVYGIDEDSSPDSKLTSVLAPAAQYILDSFLSPSSSSQRAMNPLLSILTS-GLNTPLSSLGDRSGQLLS 796 (931)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcchhhHHhhhHHHHHHHHHHccCCCchhhcchHHHHHHhc-ccccchhhhhhhHHHHHH
Q ss_pred -----HHHHHHHHHHHHhccCcceechhHHHH
Q 004917 501 -----RCKCIEWLNHLSSSSGIFIPVTSLMLD 527 (724)
Q Consensus 501 -----Rfhlir~L~~Ls~~t~~fIPl~p~Lle 527 (724)
-|.+.+.|+++....+ ++.|-.||
T Consensus 797 ~~v~~sl~~~~~Ll~~r~~~~---~l~PS~LE 825 (931)
T PF10487_consen 797 RLVQSSLSFATLLLRIRSYLN---LLPPSALE 825 (931)
T ss_pred HHHHHHHHHHHHHHHHhhhcc---CCCchHHH
No 52
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.18 E-value=2e+02 Score=30.81 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004917 293 RPLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 368 (724)
Q Consensus 293 ~~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~ 368 (724)
...|+.|+.-++..+..- -|+.+....|+-|.++. ---.+..+....+-.++++|++|++.+|+.+--+|-+|+.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 456789998888875443 36677677788787753 1223345667788899999999999888877777777655
No 53
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=30.03 E-value=8.5e+02 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=19.8
Q ss_pred CcchhhhHHHHHHHHHHHHHhhcCCcHHHHH
Q 004917 287 SKWKTVRPLIKSYLRSTLFMLNQATDSEILA 317 (724)
Q Consensus 287 ~kw~kl~~liKsyl~sll~LL~~ltd~~~l~ 317 (724)
..|.-=+.+++.|.+-+-.|...+.+++++.
T Consensus 211 ~l~~yeqsLl~~Y~~yi~tl~~~~k~~S~~~ 241 (657)
T COG5117 211 HLKDYEQSLLRWYTSYIKTLVDDVKDESTLD 241 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 4566667788877776666666665554443
No 54
>PHA02458 A protein A*; Reviewed
Probab=29.22 E-value=1.2e+02 Score=32.33 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcC--CccchhHHH
Q 004917 373 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQ--DLLRSSNKA 423 (724)
Q Consensus 373 ~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~l--D~~~sYq~A 423 (724)
+-+..|+|..|+ ||.+|.....-+.+-++.-.|++||--+ |.+--||+.
T Consensus 200 tkmal~~kk~fr--ir~sr~~gm~l~smahls~~~liqlt~~~~d~tp~~qil 250 (341)
T PHA02458 200 TKMALLPKKLFR--IRMSRNFGMKLLSMAHLSAECLIQLTQVGYDVTPFNNIL 250 (341)
T ss_pred hhHhhchHHHHH--hhhhhhcccchhhhhhhhHHHHHHHHhcccCcchHHHHH
Confidence 347778998887 7899999888888999999999999766 555557753
No 55
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.58 E-value=42 Score=44.33 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=9.5
Q ss_pred ccCCchhhhccCCCCc
Q 004917 62 IEDMSLEAIFSEDESD 77 (724)
Q Consensus 62 ~~~m~vd~ff~~~~~~ 77 (724)
-+|||-.|=|--++++
T Consensus 142 eed~~~~~~~~~d~~~ 157 (2849)
T PTZ00415 142 EEDMSPRDNFVIDDDD 157 (2849)
T ss_pred hhhcCcccccccCCcc
Confidence 4588886656544443
No 56
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=27.20 E-value=83 Score=34.13 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=42.1
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhch
Q 004917 363 LQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKK 442 (724)
Q Consensus 363 Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~ 442 (724)
+..||.-+|..| .||..|.|+-+|-..- -+.|||||=..|++.++.
T Consensus 245 ie~LC~G~P~EF------~myl~Y~R~L~F~E~P--------------------------dy~ylrqlFriLfr~ln~-- 290 (341)
T KOG1163|consen 245 IEVLCKGFPAEF------AMYLNYCRGLGFEEKP--------------------------DYMYLRQLFRILFRTLNH-- 290 (341)
T ss_pred HHHHhCCCcHHH------HHHHHHHhhcCCCCCC--------------------------cHHHHHHHHHHHHhhccc--
Confidence 445677776665 5899999999985322 267999999999998875
Q ss_pred hhhhhhcccchhH
Q 004917 443 KEAVKKICSWQYA 455 (724)
Q Consensus 443 Ke~~k~VYNWQfv 455 (724)
.|--+|.|-..
T Consensus 291 --~~d~iyDW~~l 301 (341)
T KOG1163|consen 291 --QYDYIYDWTML 301 (341)
T ss_pred --cCCeEeeHHHH
Confidence 45667887543
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.05 E-value=6.3e+02 Score=25.01 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=63.0
Q ss_pred hhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhH-HHHHH
Q 004917 329 FFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNS 407 (724)
Q Consensus 329 y~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~In-fMkNs 407 (724)
....||.+.-.++..+...-.+.+..||-.|..+|.+|....--..-..++-.+ +.-.. ..=|.|. +-+.+
T Consensus 15 L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~----l~~l~----D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 15 LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRI----LKLLV----DENPEIRSLARSF 86 (178)
T ss_pred HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHH----HHHHc----CCCHHHHHHHHHH
Confidence 356789999999999999999999999999999999998753222222221222 22111 1223343 55667
Q ss_pred HHHHhcC-CccchhHHHHHHHHHHHHH
Q 004917 408 FVELCSQ-DLLRSSNKAKVSINNLSRI 433 (724)
Q Consensus 408 ~~EL~~l-D~~~sYq~AF~yIRQLAIh 433 (724)
+.|+..- +++.-|++--..|-+|...
T Consensus 87 ~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 87 FSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 7777765 7777777766666655543
No 58
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=26.71 E-value=6.1e+02 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHHHhcc
Q 004917 334 PLLIRRLIKIAVHLWATGEET---VSFHSFLILQDVASGF 370 (724)
Q Consensus 334 ~kl~k~llK~lv~lWs~~~e~---vrv~AFl~Lr~l~~~~ 370 (724)
+.+++.+=+.+-..|...... .-|.+|++||=+|-..
T Consensus 224 R~i~~~lr~~v~~kfpd~~~~~~~~~Vg~FiFLRFicPAI 263 (395)
T cd05137 224 RHILKYIRAKLEDRYGDFLRTVVYNSISGFLFLRFFCPAI 263 (395)
T ss_pred HHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHhcccc
Confidence 345555555555567654322 3478999999887654
No 59
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.60 E-value=4.4e+02 Score=26.54 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc
Q 004917 293 RPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS 372 (724)
Q Consensus 293 ~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~ 372 (724)
..++-.|+..++.+. .-++..+-...++-+.-++..=+..|+. .+-.++.+=++++..+|-.|+-.++.+...+++
T Consensus 3 s~l~Qryl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 3 SALVQRYLKNILELC-LSSDDSVRLAALQVLELILRQGLVNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 357888999999954 3455555555555555555555556653 455566677888889999999999999888744
Q ss_pred chHHHHHHHHHHHH
Q 004917 373 DCFDLCLIKMYKAF 386 (724)
Q Consensus 373 ~~le~~LK~~Y~~y 386 (724)
=+.-....++=.+|
T Consensus 79 ~v~~~~~~gi~~af 92 (187)
T PF12830_consen 79 LVESRYSEGIRLAF 92 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 60
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=25.20 E-value=66 Score=34.31 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhc
Q 004917 131 ENKKKKLSRLKA 142 (724)
Q Consensus 131 ~~hk~~L~~Lke 142 (724)
+....+|+++|.
T Consensus 149 ~~Ll~ELekIKk 160 (244)
T PF04889_consen 149 AALLRELEKIKK 160 (244)
T ss_pred HHHHHHHHHHHH
Confidence 555666666664
No 61
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.92 E-value=1.4e+03 Score=28.19 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcCCcH--------HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004917 296 IKSYLRSTLFMLNQATDS--------EILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 367 (724)
Q Consensus 296 iKsyl~sll~LL~~ltd~--------~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~ 367 (724)
-++|+..+.+++.+.+.. .+..-+++.|...+|+|- +.-.+++.+|.+-+.+...++..+-.+++.++
T Consensus 277 Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN----~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf 352 (704)
T KOG2153|consen 277 YKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFN----LRQKIVKLVVRLINDPGRPVSSGCIQTIKTLF 352 (704)
T ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhcc----HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 356777777777777221 222334444545455544 45566777777777777778888888888887
Q ss_pred hcc
Q 004917 368 SGF 370 (724)
Q Consensus 368 ~~~ 370 (724)
..-
T Consensus 353 ~~D 355 (704)
T KOG2153|consen 353 END 355 (704)
T ss_pred cCC
Confidence 753
No 62
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.46 E-value=45 Score=35.80 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhcCC
Q 004917 128 LELENKKKKLSRLKAKD 144 (724)
Q Consensus 128 ~d~~~hk~~L~~LkekD 144 (724)
++++.+|..-.+=|.++
T Consensus 257 de~Ee~K~~~k~kk~~~ 273 (303)
T KOG3064|consen 257 DEIEENKKESKKKKGKK 273 (303)
T ss_pred hhHHHhhhhhhhcccCC
Confidence 44566665555544443
No 63
>PTZ00429 beta-adaptin; Provisional
Probab=23.80 E-value=1.5e+03 Score=28.26 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 004917 339 RLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMY 383 (724)
Q Consensus 339 ~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y 383 (724)
++-..++.| .++...+|..+.-.|+-|+...+ ..+..-++..|
T Consensus 298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff 340 (746)
T PTZ00429 298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFY 340 (746)
T ss_pred HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhh
Confidence 344555667 44455677777766766666654 33333344433
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.49 E-value=2.7e+02 Score=24.20 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHH-H-HHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004917 303 TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLL-I-RRLIKIAVHLWATGEETVSFHSFLILQDVA 367 (724)
Q Consensus 303 ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl-~-k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~ 367 (724)
++.+|.. +++.+...++..|..+....-..+.. . ..++..++++-.+.+..++-.|..+|.+++
T Consensus 54 l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 54 LVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3444443 45566666666555543322111121 1 225777777777777778888888888775
No 65
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.42 E-value=22 Score=34.33 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHhhhhcccCCCcc-cchHHHHH
Q 004917 474 LQPLLYIIIQIINGMATLFPGPRY-LPLRCKCI 505 (724)
Q Consensus 474 L~pLiYPLVQVi~G~irLiPt~ry-~PLRfhli 505 (724)
+--+|||||=+|+|++|-..+..| |||.+..|
T Consensus 110 ~alsi~~lv~ti~a~~Ka~eGq~YryPLtiRfi 142 (143)
T COG3296 110 FALSILSLVLTIIAAIKAYEGQEYRYPLTIRFI 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceeeeeeEEEee
Confidence 334689999999999999998766 78765543
No 66
>PF08559 Cut8_C: Cut8 six-helix bundle; InterPro: IPR013868 In Schizosaccharomyces pombe (Fission yeast), Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasomes []. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with the proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster (Fruit fly), Anopheles gambiae (African malaria mosquito) and Dictyostelium discoideum (Slime mold). ; PDB: 3Q5W_A 3Q5X_A.
Probab=23.13 E-value=7.1e+02 Score=24.43 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHhHHHHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcc
Q 004917 256 FVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAF 333 (724)
Q Consensus 256 ~~L~~lp~~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f 333 (724)
-.|+..-.-+.+.+|++..... .-.+.++++.+-.|+.+++....++- ...-...+|+-|.....++...
T Consensus 8 ~~L~~~~~~i~~s~Py~~~~~~--------dyaY~Rvk~~L~~F~~~L~D~~~~~lPP~~~~~~~sL~fl~~at~~v~~L 79 (143)
T PF08559_consen 8 EVLQQKQENIYKSFPYSRSVSS--------DYAYNRVKPHLLEFLKALSDFGLNFLPPNEQQWSTSLEFLDEATNIVHKL 79 (143)
T ss_dssp HHHHHHHHHHHHTS-SSS-TTS--------HHHHHHHHHHHHHHHHHHHHHGGGGSTTT---HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCCCCCCc--------chhHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHC
Confidence 4456666777788888764221 23588899999999999999887776 5555555666666666777766
Q ss_pred hHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHH
Q 004917 334 PLLIRRLIKIAVHLWATGE-ETVSFHSFLILQDV 366 (724)
Q Consensus 334 ~kl~k~llK~lv~lWs~~~-e~vrv~AFl~Lr~l 366 (724)
|. |.+.+ ...|-.||=-|-..
T Consensus 80 P~------------w~~~~~n~~k~~~ye~ls~~ 101 (143)
T PF08559_consen 80 PN------------WDNQSHNYYKDKCYEQLSNA 101 (143)
T ss_dssp ---------------SSCGGGHHHHHHHHHHHHH
T ss_pred CC------------CCCHHHHHHHHHHHHHHHHH
Confidence 65 77766 34666666555443
No 67
>PTZ00479 RAP Superfamily; Provisional
Probab=23.12 E-value=1.2e+03 Score=27.07 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc
Q 004917 293 RPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS 372 (724)
Q Consensus 293 ~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~ 372 (724)
..+...++.-+...|.+++..++.. ++..|..+. +-.+.++..+-+.++.-|..=..+-=+-+|.++.+|+..-
T Consensus 115 ~efy~~~~~~v~~~L~~fssh~L~~-i~wALsrL~---Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~-- 188 (435)
T PTZ00479 115 PEFYEKMLKFVQPLLPNFYSHSLMC-IAWALNRVQ---IRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYT-- 188 (435)
T ss_pred HHHHHHHHHHHHHHhhhcCccHHHH-HHHHHHhcC---CCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCc--
Confidence 4578888888888888888766543 455555543 4558889999999999998844332234556666665532
Q ss_pred chHHHHHHHHHHHH-----Hhhcc-cCCccchhhhHH----HHHHHHHHhcCC----ccchhHHHH---HHHHHHHHHHH
Q 004917 373 DCFDLCLIKMYKAF-----IGHCK-FAEPALFKHLQF----LRNSFVELCSQD----LLRSSNKAK---VSINNLSRILQ 435 (724)
Q Consensus 373 ~~le~~LK~~Y~~y-----v~~~k-~t~~~tl~~Inf----MkNs~~EL~~lD----~~~sYq~AF---~yIRQLAIhLR 435 (724)
..+-.-|-..+.+= -++|| -+++-|+ ++| |+-.+.|.|.-- -+.-||.|| +|||.+.=|+=
T Consensus 189 ~~l~k~l~~~~~~rle~~~~~~~r~~i~~it~--~~Lf~d~m~~~~ler~s~~~~c~r~~hl~~~y~~aly~rl~~p~v~ 266 (435)
T PTZ00479 189 NNLKKFLSEKMVEKLESLFAQDFRNVVNDVTL--IHLYDDNTQIYILERFSKMFICARPQHLQQAYKSAVAVRVLLPHVW 266 (435)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhcChhhH--HHHhhhHHHHHHHHHccccceecccHHHHHHHhhhhhheeechHHH
Confidence 22222233333332 33555 3443332 332 455677776532 345677999 99999999998
Q ss_pred HhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004917 436 LGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 515 (724)
Q Consensus 436 na~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t 515 (724)
+.++.+.+.-+. ++|.+=|.. -...|+ |++--+-++|..+--.-
T Consensus 267 ~~Ls~~~r~Fl~-----------r~s~r~i~~---------------------~~~~~S----~~h~dVS~~L~~mGI~H 310 (435)
T PTZ00479 267 FQLSKSVKSFYT-----------RLSMRRIPQ---------------------SLRKPS----PFQWDVSNCLAKLGISH 310 (435)
T ss_pred HhcCHHHHHHHH-----------HHhhccccc---------------------cCCCCc----HHHHHHHHHHHHhCCch
Confidence 888876553221 334432221 011222 34444899998887555
Q ss_pred CcceechhHHHHhhc
Q 004917 516 GIFIPVTSLMLDVLE 530 (724)
Q Consensus 516 ~~fIPl~p~LleiL~ 530 (724)
..-+...||.+||..
T Consensus 311 ~ne~~~Gpf~iDI~~ 325 (435)
T PTZ00479 311 RNTFYWGCFWIDIGE 325 (435)
T ss_pred hhheeecCeEEEEec
Confidence 444568999888874
No 68
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=22.72 E-value=8.8e+02 Score=25.24 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHHhhcccCCccchhh--------hHHHHHHHHHHhcC--Ccc--chhHHHHHHHHH
Q 004917 372 SDCFDLCLIKMYKAFIGHCKFAEPALFKH--------LQFLRNSFVELCSQ--DLL--RSSNKAKVSINN 429 (724)
Q Consensus 372 ~~~le~~LK~~Y~~yv~~~k~t~~~tl~~--------InfMkNs~~EL~~l--D~~--~sYq~AF~yIRQ 429 (724)
.+.+..|+-+++..| ......+..++|. +.=+++|+++=+.- +++ -.+..-|.|||.
T Consensus 141 ~~~i~~C~~~~~~~~-~~~~~s~~~~~p~~~~~qC~~l~~~~~Cvv~~Le~C~~~tpani~~~~f~~i~k 209 (213)
T PF07165_consen 141 KDNIQQCANKTFSGY-SDMNISKLMSIPKFGEKQCSDLDNLRSCVVEKLEKCSDPTPANIFDSFFRFIRK 209 (213)
T ss_pred hHHHHHHHHHHHhhc-cccccccccccCcCChHhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHh
Confidence 566778888888877 3222222244544 66689999966554 333 448888999986
No 69
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=2.2e+03 Score=29.29 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=48.2
Q ss_pred hhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCccee----
Q 004917 445 AVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIP---- 520 (724)
Q Consensus 445 ~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~fIP---- 520 (724)
+-+..|| ++|..+++. ...-.+|.||.+ ++-..-.+-+-.=+-+|++|++++..++..+..-+|
T Consensus 1371 a~q~Lw~-------dvW~e~vsg---gagtvrl~~~ei--Ln~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~i 1438 (1702)
T KOG0915|consen 1371 ANQELWN-------DVWAELVSG---GAGTVRLYLLEI--LNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVI 1438 (1702)
T ss_pred HHHHHHH-------HHHHHhCCC---CcchhhhhHHHH--HHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHH
Confidence 4455566 788888875 344566666644 222223344455589999999999999988877777
Q ss_pred --chhHHHHhhcc
Q 004917 521 --VTSLMLDVLEY 531 (724)
Q Consensus 521 --l~p~LleiL~s 531 (724)
+++++++-|+.
T Consensus 1439 lkl~~~ll~~L~G 1451 (1702)
T KOG0915|consen 1439 LKLALSLLDTLNG 1451 (1702)
T ss_pred HHHHHHHHHHhhc
Confidence 44444444443
No 70
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=20.95 E-value=45 Score=37.15 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.6
Q ss_pred HHHhhcCChhhhHhhhh---hCccccCCCCC
Q 004917 137 LSRLKAKDPGFSKFLES---HDKGLKSFRNE 164 (724)
Q Consensus 137 L~~LkekDPEFyKyL~e---nD~eLL~F~~~ 164 (724)
|.+|+|-|||+|+-|++ +.++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 33 (416)
T PRK00011 3 MDNLAEYDPEIADAIEQELKRQEEHIELIAS 33 (416)
T ss_pred chhhhhcCHHHHHHHHHHHHHHhcCeeeecc
Confidence 56899999999999987 77888887653
Done!