Query 004917
Match_columns 724
No_of_seqs 207 out of 292
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x19_B Importin-13; nuclear tr 89.7 24 0.00081 41.6 22.1 132 298-439 486-622 (963)
2 2bpt_A Importin beta-1 subunit 88.2 34 0.0012 39.1 21.5 217 297-529 406-648 (861)
3 4fdd_A Transportin-1; heat rep 85.9 51 0.0017 38.3 21.5 228 294-529 396-679 (852)
4 2x1g_F Cadmus; transport prote 83.7 35 0.0012 40.3 19.1 218 298-530 501-740 (971)
5 4fdd_A Transportin-1; heat rep 81.8 32 0.0011 40.1 17.4 84 287-373 78-162 (852)
6 3m1i_C Exportin-1; heat repeat 81.5 36 0.0012 40.9 18.2 93 294-388 186-286 (1049)
7 3m1i_C Exportin-1; heat repeat 80.1 41 0.0014 40.5 18.0 65 319-383 520-595 (1049)
8 1qgr_A Protein (importin beta 76.1 1.1E+02 0.0039 34.8 24.2 181 335-529 404-611 (876)
9 3a6p_A Exportin-5; exportin-5, 75.8 1.4E+02 0.0048 36.8 21.2 162 301-468 532-735 (1204)
10 1ibr_B P95, importin beta-1 su 73.0 92 0.0032 32.3 19.5 65 450-518 378-442 (462)
11 2bpt_A Importin beta-1 subunit 72.7 1.4E+02 0.0046 34.1 28.7 191 336-530 495-729 (861)
12 1ibr_B P95, importin beta-1 su 71.5 68 0.0023 33.3 14.9 80 288-371 79-162 (462)
13 1u6g_C TIP120 protein, CAND1; 60.9 2.3E+02 0.008 34.3 18.7 204 297-530 47-265 (1230)
14 1u6g_C TIP120 protein, CAND1; 59.2 98 0.0034 37.6 14.9 173 336-529 431-615 (1230)
15 1wa5_C Importin alpha RE-expor 59.0 2E+02 0.007 33.9 17.4 181 312-512 471-672 (960)
16 3gjx_A Exportin-1; transport, 58.7 2E+02 0.0069 35.3 17.4 75 296-370 515-597 (1073)
17 4hat_C Exportin-1; heat repeat 58.4 1.2E+02 0.0042 36.8 15.5 52 319-370 520-571 (1023)
18 3gjx_A Exportin-1; transport, 53.5 43 0.0015 41.1 10.3 96 290-388 194-294 (1073)
19 4hat_C Exportin-1; heat repeat 51.8 1.6E+02 0.0054 35.8 14.9 97 290-388 182-286 (1023)
20 1wa5_C Importin alpha RE-expor 51.6 2.8E+02 0.0096 32.8 16.9 31 354-384 376-406 (960)
21 2x1g_F Cadmus; transport prote 49.8 2.5E+02 0.0087 32.9 16.1 80 450-530 366-469 (971)
22 2qk2_A LP04448P; mini spindles 47.4 2E+02 0.0068 27.6 14.5 58 311-368 69-127 (242)
23 1ho8_A Vacuolar ATP synthase s 45.2 2.7E+02 0.0091 31.2 14.2 134 298-439 77-225 (480)
24 3u0r_A Apoptosis inhibitor 5; 44.8 30 0.001 38.9 6.5 94 326-429 52-145 (507)
25 2x19_B Importin-13; nuclear tr 43.6 4.5E+02 0.015 30.6 19.5 148 355-530 423-574 (963)
26 1qgr_A Protein (importin beta 42.1 4.3E+02 0.015 29.9 30.8 57 473-531 684-741 (876)
27 3faj_A ORF131, putative unchar 40.0 40 0.0014 31.1 5.4 62 560-625 25-86 (151)
28 3jxy_A Alkylpurine DNA glycosy 39.8 2.4E+02 0.0082 27.8 11.8 96 299-404 5-116 (232)
29 3a6p_A Exportin-5; exportin-5, 39.1 3.9E+02 0.013 32.8 15.8 55 313-370 221-278 (1204)
30 1xqr_A HSPBP1 protein; armadil 38.6 3.4E+02 0.012 27.8 14.0 151 301-467 127-288 (296)
31 4b8j_A Importin subunit alpha- 36.5 3E+02 0.01 29.5 13.0 70 300-369 204-274 (528)
32 1wa5_B Importin alpha subunit; 32.5 3.2E+02 0.011 29.4 12.4 71 299-370 216-288 (530)
33 3tpo_A Importin subunit alpha- 31.9 3.8E+02 0.013 29.1 13.0 98 341-440 164-262 (529)
34 2qk2_A LP04448P; mini spindles 28.9 1.4E+02 0.0049 28.7 7.9 77 298-375 133-212 (242)
35 2oxo_A Integrase; DNA-binding 27.4 98 0.0034 24.5 5.5 38 193-230 45-82 (103)
36 3dt5_A Uncharacterized protein 26.0 53 0.0018 29.0 3.6 29 562-590 97-125 (135)
37 4aco_A Centromere DNA-binding 24.1 16 0.00056 43.3 0.0 20 5-24 610-632 (956)
38 2jdq_A Importin alpha-1 subuni 24.1 4.5E+02 0.015 27.0 11.2 80 285-369 11-95 (450)
39 3ibv_A Exportin-T; karyopherin 23.5 9.8E+02 0.033 28.7 15.4 209 312-530 508-748 (980)
40 2kiw_A INT protein; alpha, str 23.4 1.2E+02 0.0042 24.9 5.5 38 193-230 43-80 (111)
41 1paq_A Translation initiation 23.0 5E+02 0.017 24.8 10.6 52 194-261 22-73 (189)
42 3lys_A Prophage PI2 protein 01 22.9 1.2E+02 0.0043 25.4 5.5 37 193-229 50-86 (112)
43 2y6w_A BCL-2-like protein 2; a 21.0 2.3E+02 0.008 27.1 7.6 84 398-486 53-140 (177)
44 2qk1_A Protein STU2; STU2P, XM 20.8 4.8E+02 0.016 25.7 10.2 122 311-441 73-203 (249)
45 2kj5_A Phage integrase; GFT PS 20.8 1.1E+02 0.0038 25.5 4.7 38 193-230 50-87 (116)
46 4db6_A Armadillo repeat protei 20.2 3.5E+02 0.012 24.7 8.5 66 301-370 57-127 (210)
No 1
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.69 E-value=24 Score=41.57 Aligned_cols=132 Identities=9% Similarity=0.098 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCC--cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---
Q 004917 298 SYLRSTLFMLNQAT--DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS--- 372 (724)
Q Consensus 298 syl~sll~LL~~lt--d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~--- 372 (724)
.++..++..|.++. ++.+-..++.-+..+..|+...+..+..++..++..... ..|+..|-..+.++|...+.
T Consensus 486 ~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 486 DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776776 355555666677777788888888888888888887754 67888888888999876543
Q ss_pred chHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhh
Q 004917 373 DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQ 439 (724)
Q Consensus 373 ~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~ 439 (724)
++++.++..+...+-+. ... .......-.|+.-+..--+ ...--.|+.+|.-.|.+.+.
T Consensus 564 p~~~~il~~l~~~l~~~----~~~-~~~~~~~~eai~~i~~~~~---~~~~~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQ----IHK-TSQCMWLMQALGFLLSALQ---VEEILKNLHSLISPYIQQLE 622 (963)
T ss_dssp TTHHHHHHHHHHHHHTT----CSC-HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccC----CCC-hHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 55666665554433211 111 1222233344444433211 33344567777666665554
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.19 E-value=34 Score=39.06 Aligned_cols=217 Identities=9% Similarity=0.079 Sum_probs=103.8
Q ss_pred HHHHHHHHHHh-hcCCc--HHHHHHHHHHhhhhhhhhhc---chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 297 KSYLRSTLFML-NQATD--SEILAFSLNRLRTSIVFFAA---FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 297 Ksyl~sll~LL-~~ltd--~~~l~~~L~~l~~llpy~~~---f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
..|+..++..| ..+.| +.+-..++..+..+..++.. -......++..++...... ..+|..|...|..++...
T Consensus 406 ~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 406 TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence 44444444332 33333 33433444444444444432 1345666677777666554 568888888888888765
Q ss_pred C---cchHHHHHHHHHHHHHhhcccCCccchhhhH-HHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhc-----
Q 004917 371 S---SDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTK----- 441 (724)
Q Consensus 371 ~---~~~le~~LK~~Y~~yv~~~k~t~~~tl~~In-fMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k----- 441 (724)
. ...+...+..+...+++..+....+ +.+. ..-.++..|....+.. ...|+.++.-.|-+.+...
T Consensus 485 ~~~~~~~l~~~~~~il~~L~~~l~~~d~~--~~vr~~a~~al~~l~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~~~ 558 (861)
T 2bpt_A 485 AEATPSPIYNFYPALVDGLIGAANRIDNE--FNARASAFSALTTMVEYATDT----VAETSASISTFVMDKLGQTMSVDE 558 (861)
T ss_dssp SSSSSCGGGGGHHHHHHHHHHHHTCSCCG--GGHHHHHHHHHHHHHHHCCGG----GHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCcCcc--hHHHHHHHHHHHHHHHHcchh----hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 2333333333344444433322211 1111 1112222222222221 1234555444443333211
Q ss_pred ------hhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc
Q 004917 442 ------KKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS 515 (724)
Q Consensus 442 ------~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t 515 (724)
..+....+. .+++.....++.... ..+.|.+-++++.++.+++-..+. .+|-.++..+-.++...
T Consensus 559 ~i~~~~~~~~~~~~~----~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~---~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 559 NQLTLEDAQSLQELQ----SNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKDSA---FIEDDVFYAISALAASL 629 (861)
T ss_dssp GGCCHHHHHHHHHHH----HHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTTGG---GTHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHH----HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCCCC---cHHHHHHHHHHHHHHHH
Confidence 011122111 234445555554332 257788888888888877653221 46777888888887665
Q ss_pred Cc-cee----chhHHHHhh
Q 004917 516 GI-FIP----VTSLMLDVL 529 (724)
Q Consensus 516 ~~-fIP----l~p~LleiL 529 (724)
|. |.| +.|+|+..|
T Consensus 630 ~~~~~~~l~~i~~~l~~~l 648 (861)
T 2bpt_A 630 GKGFEKYLETFSPYLLKAL 648 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 53 444 445555555
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.88 E-value=51 Score=38.32 Aligned_cols=228 Identities=10% Similarity=0.091 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC
Q 004917 294 PLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA--FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS 371 (724)
Q Consensus 294 ~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~--f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~ 371 (724)
+.+...+..++.+|+. .++.+-..+...+..+..++.. .......++..++..-..++..+|..|...|..++...+
T Consensus 396 ~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 396 PYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444432 2344555555555555555432 345566777777777666667899999998888886544
Q ss_pred c---chHHHHHHHHHHHHHhhcccCC------------------ccchhhhHHHHHHHHHHhcC--CccchhHHHHHHHH
Q 004917 372 S---DCFDLCLIKMYKAFIGHCKFAE------------------PALFKHLQFLRNSFVELCSQ--DLLRSSNKAKVSIN 428 (724)
Q Consensus 372 ~---~~le~~LK~~Y~~yv~~~k~t~------------------~~tl~~InfMkNs~~EL~~l--D~~~sYq~AF~yIR 428 (724)
. ++++.++..+-..+ +.....+ ...-+.+.-....+.+.|.. |.......++.-|.
T Consensus 475 ~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~ 553 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 553 (852)
T ss_dssp GGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 45555555443332 2111000 00001222222344443332 33333346677777
Q ss_pred HHHHHHHHhhhhchhhhhhhcc-----------------------cch-hHHHHHHHHHHHcccCCCCCccchH--HHHH
Q 004917 429 NLSRILQLGLQTKKKEAVKKIC-----------------------SWQ-YANCIDLWVTYISHCIHDYDLQPLL--YIII 482 (724)
Q Consensus 429 QLAIhLRna~~~k~Ke~~k~VY-----------------------NWQ-fvhsL~~Ws~VLs~~~~~s~L~pLi--YPLV 482 (724)
.++..++..+..--..-|..+. .-+ .+.++++.+.++.... ..+.|++ -.++
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~~~~~~~ 631 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLVARSNIL 631 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHHHTCCHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHhcCCcHH
Confidence 7777776554321111111100 111 2445666666655431 3455554 2344
Q ss_pred HHHhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceech----hHHHHhh
Q 004917 483 QIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVT----SLMLDVL 529 (724)
Q Consensus 483 QVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~-~fIPl~----p~LleiL 529 (724)
.+++.++ .+ .....|-..+..|-.++...+ .|.|.. |+|+..|
T Consensus 632 ~~l~~~l---~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 632 TLMYQCM---QD-KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679 (852)
T ss_dssp HHHHHHT---TC-SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred HHHHHHh---CC-CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 4444433 22 235688888888888886554 455543 4444555
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.75 E-value=35 Score=40.35 Aligned_cols=218 Identities=12% Similarity=0.051 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhcCC----cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-
Q 004917 298 SYLRSTLFMLNQAT----DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS- 372 (724)
Q Consensus 298 syl~sll~LL~~lt----d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~- 372 (724)
.++..++.+|.++. .+-+-..++.-+..+..|+...+..+..++..++.... ..|+..|...+++++.....
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHh
Confidence 35556666766665 34555566666777777888777888888888887662 56888888888899876543
Q ss_pred --chHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhc-CCccchhHHHHHHHHHHHHHHHHhhhhc--hhhhhh
Q 004917 373 --DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCS-QDLLRSSNKAKVSINNLSRILQLGLQTK--KKEAVK 447 (724)
Q Consensus 373 --~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~-lD~~~sYq~AF~yIRQLAIhLRna~~~k--~Ke~~k 447 (724)
++++.++..+...+- ..+... ........|+..+.. +.+..-+.+.=.++..+.-.+..++... ..+.
T Consensus 578 l~p~~~~ll~~l~~~l~----~~~~~~-~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~-- 650 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN----TGRMKN-SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA-- 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHH----STTSCH-HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH--
T ss_pred ccccHHHHHHHHHHHHc----CCCCCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh--
Confidence 344444433333222 111111 222334456666654 2222223333333333333333333322 1111
Q ss_pred hcccchhHHHHHHHHHHHcccCC-----------CCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-
Q 004917 448 KICSWQYANCIDLWVTYISHCIH-----------DYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS- 515 (724)
Q Consensus 448 ~VYNWQfvhsL~~Ws~VLs~~~~-----------~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t- 515 (724)
.=+.+++|+.-+.++..... ..++.|++-.+.+++..++...+ ...+++=.+++.+-+++..-
T Consensus 651 ---~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 651 ---RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWV--EEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhhh
Confidence 12345566666766654211 23455555555555555544322 23466666777666655432
Q ss_pred CcceechhHHHHhhc
Q 004917 516 GIFIPVTSLMLDVLE 530 (724)
Q Consensus 516 ~~fIPl~p~LleiL~ 530 (724)
+.|.|..|-+++.|-
T Consensus 726 ~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 726 SSFQPMLQDLCLFIV 740 (971)
T ss_dssp C--CTHHHHHHHHHH
T ss_pred hhccccHHHHHHHHH
Confidence 346677776666553
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.76 E-value=32 Score=40.07 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=52.3
Q ss_pred CcchhhhHHHHHHHHH-HHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 004917 287 SKWKTVRPLIKSYLRS-TLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQD 365 (724)
Q Consensus 287 ~kw~kl~~liKsyl~s-ll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~ 365 (724)
++|.++.+-.|.++.+ +++.|.. +++.+-..+..-+..+...- ++..-..++..++..+++++..+|-.|+.+|..
T Consensus 78 ~~w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~--~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 78 AHFQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKG--ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQK 154 (852)
T ss_dssp TSGGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHT--TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhc--CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4799998888888887 4444442 22222222222222222211 333344577778888888888899999999999
Q ss_pred HHhccCcc
Q 004917 366 VASGFSSD 373 (724)
Q Consensus 366 l~~~~~~~ 373 (724)
++...+..
T Consensus 155 i~~~~~~~ 162 (852)
T 4fdd_A 155 ICEDSAEI 162 (852)
T ss_dssp HHHHHTTH
T ss_pred HHHHhHHH
Confidence 98876543
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=81.54 E-value=36 Score=40.92 Aligned_cols=93 Identities=8% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHH----HhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH-HhhcCCCchhHHHHHHHHHHHHh
Q 004917 294 PLIKSYLRSTLF----MLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAV-HLWATGEETVSFHSFLILQDVAS 368 (724)
Q Consensus 294 ~liKsyl~sll~----LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv-~lWs~~~e~vrv~AFl~Lr~l~~ 368 (724)
..+..++..++. +|....+.++...+|+.+..++.|+-...-+.-.++..++ .+++ ...+|.+|.-||..++.
T Consensus 186 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHh
Confidence 444555555444 4444456778888888888766654321111122444444 2332 56789999999999887
Q ss_pred ccCcch---HHHHHHHHHHHHHh
Q 004917 369 GFSSDC---FDLCLIKMYKAFIG 388 (724)
Q Consensus 369 ~~~~~~---le~~LK~~Y~~yv~ 388 (724)
..-.+. ++..+..+|...+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 264 LKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHH
Confidence 642222 33444455544444
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.06 E-value=41 Score=40.49 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=48.2
Q ss_pred HHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-----------chHHHHHHHHH
Q 004917 319 SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS-----------DCFDLCLIKMY 383 (724)
Q Consensus 319 ~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~-----------~~le~~LK~~Y 383 (724)
++.-+..+-.|+...+..+..++..++.....+...|+..|-..+.++|...+. ++++.++..+.
T Consensus 520 ~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~ 595 (1049)
T 3m1i_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 444556666788888888999999988877666678998888888999886553 55666665544
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=76.11 E-value=1.1e+02 Score=34.80 Aligned_cols=181 Identities=9% Similarity=0.033 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc-----chHHHHHHHHHHHHHhhcccCCccc-hhhhHHHHHHH
Q 004917 335 LLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS-----DCFDLCLIKMYKAFIGHCKFAEPAL-FKHLQFLRNSF 408 (724)
Q Consensus 335 kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~-----~~le~~LK~~Y~~yv~~~k~t~~~t-l~~InfMkNs~ 408 (724)
.....++..++.........||..|+.+|.+++...+. ++++.+|..+...+ .. ++.. ...+..+. .+
T Consensus 404 ~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l----~~-~~~v~~~a~~al~-~l 477 (876)
T 1qgr_A 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL----SA-EPRVASNVCWAFS-SL 477 (876)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT----TS-CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH----cC-CHHHHHHHHHHHH-HH
Confidence 34566777788887777778999999999999987643 55666665554432 21 1100 00011111 11
Q ss_pred HHHhc-CC----cc---chhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHH
Q 004917 409 VELCS-QD----LL---RSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYI 480 (724)
Q Consensus 409 ~EL~~-lD----~~---~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYP 480 (724)
++-++ .+ +. ... .-=.|+.++--.|-..+.....+ ...+. ..+++..+.++.... ....+++-+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~il~~L~~~l~~~~~~-~~~~r----~~~~~~l~~l~~~~~--~~~~~~~~~ 549 (876)
T 1qgr_A 478 AEAAYEAADVADDQEEPATY-CLSSSFELIVQKLLETTDRPDGH-QNNLR----SSAYESLMEIVKNSA--KDCYPAVQK 549 (876)
T ss_dssp HHHHHHTTSCTTSCCCCCCC-SSTTTHHHHHHHHHHHTTSCSSC-STTHH----HHHHHHHHHHHHTCC--STTHHHHHH
T ss_pred HHHhhhccccccccccccch-hhhHhHHHHHHHHHHHHhCcCcc-hhhHH----HHHHHHHHHHHHHCc--hhhHHHHHH
Confidence 22222 00 00 000 00024566666666666532111 01111 345666676766543 245666666
Q ss_pred HHHHHhhhhccc--------CC---CcccchHHHHHHHHHHHHhccC--cceechhHHHHhh
Q 004917 481 IIQIINGMATLF--------PG---PRYLPLRCKCIEWLNHLSSSSG--IFIPVTSLMLDVL 529 (724)
Q Consensus 481 LVQVi~G~irLi--------Pt---~ry~PLRfhlir~L~~Ls~~t~--~fIPl~p~LleiL 529 (724)
+++.++..+.-. .. ..|.-+|-.++..|..+....| .|.|.+|-++..|
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l 611 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASL 611 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 666665554431 11 1123467788888988888777 5566665555444
No 9
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=75.77 E-value=1.4e+02 Score=36.82 Aligned_cols=162 Identities=12% Similarity=0.153 Sum_probs=94.8
Q ss_pred HHHHHHhh--cCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHh---hcCCC---------chhHHHHHHHHHHH
Q 004917 301 RSTLFMLN--QATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL---WATGE---------ETVSFHSFLILQDV 366 (724)
Q Consensus 301 ~sll~LL~--~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~l---Ws~~~---------e~vrv~AFl~Lr~l 366 (724)
..++.+|- +.+++.+...++.-+..+.+|+...|.++..+|..++.. |..+. ..+|-+|-.+++++
T Consensus 532 ~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 532 IELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 34555543 346777777777777788999999998888888877766 43211 25888888899999
Q ss_pred HhccCc---chHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhc--
Q 004917 367 ASGFSS---DCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTK-- 441 (724)
Q Consensus 367 ~~~~~~---~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k-- 441 (724)
|...+. ++++.++..+- ..+..-+. ......+.++.-- +=+- +.-..|..--.|+++|--=+++.+.+.
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~-~~l~~~~~--l~~~e~~~L~eal-~~ia--~~~~~~~~~~~~l~~ll~P~~~~w~~~~~ 685 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVK-QLLSNELL--LTQMEKCALMEAL-VLIS--NQFKNYERQKVFLEELMAPVASIWLSQDM 685 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHH-HHHHSTTT--SCHHHHHHHHHHH-HHHH--GGGCCHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH-HHHhCccc--ccHHHHHHHHHHH-HHHh--ccCCCHHHHHHHHHHHHHHHHHHHccHHH
Confidence 998865 44555443332 22221111 2345555555432 2221 111135666677777776666666531
Q ss_pred -----hhhhhhh------------------cccchhHHHHHHHHHHHccc
Q 004917 442 -----KKEAVKK------------------ICSWQYANCIDLWVTYISHC 468 (724)
Q Consensus 442 -----~Ke~~k~------------------VYNWQfvhsL~~Ws~VLs~~ 468 (724)
.-..|-. .--|++.||+..-..+|.++
T Consensus 686 ~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~ 735 (1204)
T 3a6p_A 686 HRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRT 735 (1204)
T ss_dssp HHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHh
Confidence 0111111 01288888888877777764
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=72.96 E-value=92 Score=32.29 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCcc
Q 004917 450 CSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIF 518 (724)
Q Consensus 450 YNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~f 518 (724)
-+|+...+.=+--..|+..+....+++.+..++..++..++ . ...-.|..++.+|-+++...+--
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~---d-~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---D-PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---C-SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHHHhcccc
Confidence 37988776544444455444434455544444444444332 1 23568999999999999876543
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=72.67 E-value=1.4e+02 Score=34.08 Aligned_cols=191 Identities=10% Similarity=0.069 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHH-----------------------
Q 004917 336 LIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSSDC---FDLCLIKMYKAFI----------------------- 387 (724)
Q Consensus 336 l~k~llK~lv~lWs~~~--e~vrv~AFl~Lr~l~~~~~~~~---le~~LK~~Y~~yv----------------------- 387 (724)
....++..++.+-.+.+ ..+|..|+-+|..++...+..+ +..++-.+...+.
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 34566667777766433 5799999999999888766542 2222211111111
Q ss_pred -------hhcccCCccchhhhHHHHHHHHHHhcCCcc-chhHHHHHHHHHHHHHHHHhhhhchhhhhhhc------ccch
Q 004917 388 -------GHCKFAEPALFKHLQFLRNSFVELCSQDLL-RSSNKAKVSINNLSRILQLGLQTKKKEAVKKI------CSWQ 453 (724)
Q Consensus 388 -------~~~k~t~~~tl~~InfMkNs~~EL~~lD~~-~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~V------YNWQ 453 (724)
.-++.++..-.|.+.-+...+.+++.-... .....++..|..|+..+...+..--..-+..+ -+|.
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 111222223335555555555666654432 33455666666666554433221000000000 0111
Q ss_pred -hHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceechhHHHHhhc
Q 004917 454 -YANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVTSLMLDVLE 530 (724)
Q Consensus 454 -fvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~-~fIPl~p~LleiL~ 530 (724)
-..++.+-+.+.. .+. ..+.|.+..+++.++..++- +. ..-..|-..+.+|-.|+...| .|.|.++.++..|-
T Consensus 655 vr~~a~~~l~~l~~-~~~-~~~~~~~~~l~~~l~~~l~~-~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 655 VSITAVGFIADISN-SLE-EDFRRYSDAMMNVLAQMISN-PN-ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729 (861)
T ss_dssp HHHHHHHHHHHHHH-HTG-GGGHHHHHHHHHHHHHHHHC-TT-CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hhc-hhccchHHHHHHHHHHHhCC-cc-ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0112222222222 222 36777777777777665542 21 234688889999988887653 56666666665553
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=71.52 E-value=68 Score=33.33 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=46.8
Q ss_pred cchhhhHHHHHHHHH-HHHHhhcCCcH-HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCC--CchhHHHHHHHH
Q 004917 288 KWKTVRPLIKSYLRS-TLFMLNQATDS-EILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATG--EETVSFHSFLIL 363 (724)
Q Consensus 288 kw~kl~~liKsyl~s-ll~LL~~ltd~-~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~--~e~vrv~AFl~L 363 (724)
.|..+..-.|.++.+ ++.+|.+-+.. ..++.+|..+.. +..+- .....++-.++..+.++ +..+|..|..+|
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~---~~~~~-~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIAC---AEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHH---HHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH---Hhccc-cccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 477888878888776 66666542211 122223333322 11110 12234666666677776 667999999999
Q ss_pred HHHHhccC
Q 004917 364 QDVASGFS 371 (724)
Q Consensus 364 r~l~~~~~ 371 (724)
+.++....
T Consensus 155 ~~l~~~~~ 162 (462)
T 1ibr_B 155 GYICQDID 162 (462)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhCC
Confidence 99998663
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=60.94 E-value=2.3e+02 Score=34.26 Aligned_cols=204 Identities=10% Similarity=0.070 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc---
Q 004917 297 KSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD--- 373 (724)
Q Consensus 297 Ksyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~--- 373 (724)
+..+..++..|.. .+..+=...+..|..++..+ .+.....++..++.........+|.+|..+|..++...+..
T Consensus 47 ~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~--~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 47 RKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV--KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3444555666653 44555555555565555433 23455677777888777777789999999999999877654
Q ss_pred ------hHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHhhhhchhhhh
Q 004917 374 ------CFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDL-LRSSNKAKVSINNLSRILQLGLQTKKKEAV 446 (724)
Q Consensus 374 ------~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~-~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~ 446 (724)
+.+.++-.+...+ .. + .......-.-.++.+++.... ... .|+.++.-.|-..+..... .+
T Consensus 124 ~~~~~~~~~~llp~L~~~l----~~-~-~~~~~~~~al~~l~~~~~~~~~~l~-----~~~~~ll~~l~~~L~~~~~-~v 191 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAI----AK-Q-EDVSVQLEALDIMADMLSRQGGLLV-----NFHPSILTCLLPQLTSPRL-AV 191 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHH----SC-C-SCHHHHHHHHHHHHHHHHHTCSSCT-----TTHHHHHHHHGGGGGCSSH-HH
T ss_pred cchHHHHHHHHHHHHHHHH----cC-C-CchHHHHHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHHHcCCcH-HH
Confidence 3444444444332 21 1 122333333444445442111 111 1446666666666654211 11
Q ss_pred hhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCc-cee----c
Q 004917 447 KKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGI-FIP----V 521 (724)
Q Consensus 447 k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~-fIP----l 521 (724)
+ ..++..-+.++. ...+..+.+++-+|++.+... +. ...|-..++.|..|+...|. |.| +
T Consensus 192 R-------~~a~~al~~l~~-~~~~~~~~~~l~~l~~~L~~~----~~---~~~r~~a~~~l~~l~~~~~~~~~~~l~~l 256 (1230)
T 1u6g_C 192 R-------KRTIIALGHLVM-SCGNIVFVDLIEHLLSELSKN----DS---MSTTRTYIQCIAAISRQAGHRIGEYLEKI 256 (1230)
T ss_dssp H-------HHHHHHHHHHTT-TC----CTTHHHHHHHHHHHT----CS---SCSCTTHHHHHHHHHHHSSGGGTTSCTTH
T ss_pred H-------HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccC----Cc---hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 111222222222 223334556666666665432 11 24566667777777665442 323 4
Q ss_pred hhHHHHhhc
Q 004917 522 TSLMLDVLE 530 (724)
Q Consensus 522 ~p~LleiL~ 530 (724)
.|+++..+.
T Consensus 257 ~~~ll~~l~ 265 (1230)
T 1u6g_C 257 IPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 455555553
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.19 E-value=98 Score=37.55 Aligned_cols=173 Identities=6% Similarity=0.019 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc---chHHHHHHHHHHHHHhhcccCCccchhhhH-HHHHHHHHH
Q 004917 336 LIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS---DCFDLCLIKMYKAFIGHCKFAEPALFKHLQ-FLRNSFVEL 411 (724)
Q Consensus 336 l~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~---~~le~~LK~~Y~~yv~~~k~t~~~tl~~In-fMkNs~~EL 411 (724)
++..++..++..+.+....+|..++.+|..++...+. ++++.++..+ +...+..++ -+.+. -.-.++..+
T Consensus 431 ~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l----~~~L~d~~~--~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 431 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI----IFSLNDKSS--SSNLKIDALSCLYVI 504 (1230)
T ss_dssp HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH----HHHTTCSSS--CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH----HHHHcCCCC--cchHHHHHHHHHHHH
Confidence 4455666666678877778999999999998887543 3344444333 332222111 01111 111122222
Q ss_pred hc-CCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchh-HHHHHHHHHHHcccC-----CCCCccchHHHHHHH
Q 004917 412 CS-QDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQY-ANCIDLWVTYISHCI-----HDYDLQPLLYIIIQI 484 (724)
Q Consensus 412 ~~-lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQf-vhsL~~Ws~VLs~~~-----~~s~L~pLiYPLVQV 484 (724)
+. +.+.. .. .|+.++--.|=+++.. -||.. ..++..+..++.... ....+.|.+-.+++.
T Consensus 505 ~~~~~~~~-~~---~~l~~llp~L~~~l~d---------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 505 LCNHSPQV-FH---PHVQALVPPVVACVGD---------PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHSSCGGG-GH---HHHTTTHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHhCCHHH-HH---hHHHHHHHHHHHHHcc---------cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 21 11110 10 1333333333222222 13433 346666776664321 134677777777777
Q ss_pred HhhhhcccCCCcccchHHHHHHHHHHHHhccC-cceechhHHHHhh
Q 004917 485 INGMATLFPGPRYLPLRCKCIEWLNHLSSSSG-IFIPVTSLMLDVL 529 (724)
Q Consensus 485 i~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~-~fIPl~p~LleiL 529 (724)
++..+.- +-.-..+|-.+++.|-.|+...| .+.|.+|-++.+|
T Consensus 572 ll~~l~~--~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L 615 (1230)
T 1u6g_C 572 TIKRLKA--ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615 (1230)
T ss_dssp HHHHHSC--SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHH
Confidence 7766542 12233688888888888887765 3444445444444
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=59.01 E-value=2e+02 Score=33.95 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC--------------cchHHH
Q 004917 312 DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS--------------SDCFDL 377 (724)
Q Consensus 312 d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~--------------~~~le~ 377 (724)
.+-+-..++.-+..+..++ .+..+..++..+++.-.++.-.||..|..+|.+++...+ .++++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 548 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI 548 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred CceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHH
Confidence 3444444555555555554 356788888888887766555689999999999887421 255666
Q ss_pred HHHHHHHHHHhhcccCCccchhhhHHHHHHH---HHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchh
Q 004917 378 CLIKMYKAFIGHCKFAEPALFKHLQFLRNSF---VELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQY 454 (724)
Q Consensus 378 ~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~---~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQf 454 (724)
+|..+...+-+... ++........+-.|+ ++-++-+.. -|+-+|.-+|-+.+..-.++ --|-++
T Consensus 549 ll~~L~~ll~~~~~--~~~~~~~~e~l~~al~~vv~~~~~~~~-------p~~~~l~~~L~~~l~~~~~~----~~~~~~ 615 (960)
T 1wa5_C 549 LLKNLIALILKHGS--SPEKLAENEFLMRSIFRVLQTSEDSIQ-------PLFPQLLAQFIEIVTIMAKN----PSNPRF 615 (960)
T ss_dssp HHHHHHHHHHTTCC--CHHHHTSCHHHHHHHHHHHHHHTTTTG-------GGHHHHHHHHHHHHHHHTTS----CCCHHH
T ss_pred HHHHHHHHHHhccC--CCCcccccHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHhC----CCCcHH
Confidence 66665544333210 000000111233333 333332221 23334444444444321000 012222
Q ss_pred H-HHHHHHHHHHcccCCCC---CccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHH
Q 004917 455 A-NCIDLWVTYISHCIHDY---DLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLS 512 (724)
Q Consensus 455 v-hsL~~Ws~VLs~~~~~s---~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls 512 (724)
. .+++.-+.++.+. ..+ ++-+.++|+++-++. .....|+|--|.++..|....
T Consensus 616 ~~~~~e~l~~l~~~~-~~~~~~~~~~~~~p~~~~iL~----~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 616 THYTFESIGAILNYT-QRQNLPLLVDSMMPTFLTVFS----EDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHTS-CGGGHHHHHHHHHHHHHHHHH----TTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHHHHHHHhc
Confidence 2 1455555555541 112 244455565555543 123568888888888888776
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=58.72 E-value=2e+02 Score=35.25 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhcCCcH------H-HHHH-HHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 004917 296 IKSYLRSTLFMLNQATDS------E-ILAF-SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVA 367 (724)
Q Consensus 296 iKsyl~sll~LL~~ltd~------~-~l~~-~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~ 367 (724)
=+.|+..++..|-++.+. . +++. +.--+.++-.|+..+++.++..+..+++....+...|+-+|-..+.++|
T Consensus 515 E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 515 EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456777777776655431 2 3333 2235667788999999999999999999888777777766666666666
Q ss_pred hcc
Q 004917 368 SGF 370 (724)
Q Consensus 368 ~~~ 370 (724)
...
T Consensus 595 ~~C 597 (1073)
T 3gjx_A 595 QKC 597 (1073)
T ss_dssp HHT
T ss_pred HHH
Confidence 644
No 17
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=58.42 E-value=1.2e+02 Score=36.82 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=39.3
Q ss_pred HHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 319 SLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 319 ~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
+..-+..+-.|+..++..++.+|..++..-..+...+.-+|--.++++|...
T Consensus 520 ~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4456667778999999999999999888776665666666666777777754
No 18
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=53.51 E-value=43 Score=41.15 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHHHhh----cCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH-HHhhcCCCchhHHHHHHHHH
Q 004917 290 KTVRPLIKSYLRSTLFMLN----QATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIA-VHLWATGEETVSFHSFLILQ 364 (724)
Q Consensus 290 ~kl~~liKsyl~sll~LL~----~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~l-v~lWs~~~e~vrv~AFl~Lr 364 (724)
..++..+...+..++.++. +-++++++..+|..+..++.|+-.---..-.+|..+ ..++ +.+.+|.+|--||.
T Consensus 194 ~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 194 KHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 4466666666666666543 446788889999999988888633222223456655 3444 34568999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHHh
Q 004917 365 DVASGFSSDCFDLCLIKMYKAFIG 388 (724)
Q Consensus 365 ~l~~~~~~~~le~~LK~~Y~~yv~ 388 (724)
.|+...-.. .+..+-.+|...+.
T Consensus 272 eIv~k~~~~-~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 272 EIAGVSVSQ-YEEQFETLFTLTMM 294 (1073)
T ss_dssp HHHHSCSGG-GHHHHHHHHHHHHH
T ss_pred HHHhccccc-hHHHHHHHHHHHHH
Confidence 988763223 33445567766554
No 19
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=51.84 E-value=1.6e+02 Score=35.85 Aligned_cols=97 Identities=7% Similarity=0.114 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH-HhhcCCCchhHHHHHHHHH
Q 004917 290 KTVRPLIKSYLRSTLFMLNQA----TDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAV-HLWATGEETVSFHSFLILQ 364 (724)
Q Consensus 290 ~kl~~liKsyl~sll~LL~~l----td~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv-~lWs~~~e~vrv~AFl~Lr 364 (724)
..++..+...+..++.++.++ ++++++..+|+.+..++.|+-.---..-.++..++ .+++ .+.+|.+|--||.
T Consensus 182 ~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~ 259 (1023)
T 4hat_C 182 LHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLT 259 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 446666666666666665433 56788888999998877774322112234556666 5553 4568999999999
Q ss_pred HHHhc-cCcc--hHHHHHHHHHHHHHh
Q 004917 365 DVASG-FSSD--CFDLCLIKMYKAFIG 388 (724)
Q Consensus 365 ~l~~~-~~~~--~le~~LK~~Y~~yv~ 388 (724)
.++.. .+.+ -.+..+-.+|...+.
T Consensus 260 eIv~~~~~~~~~~~~~~l~~lf~~~l~ 286 (1023)
T 4hat_C 260 EVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1023)
T ss_dssp HHHTSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHccccCCchHHHHHHHHHHHHHHHH
Confidence 98862 2122 355566666666543
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=51.57 E-value=2.8e+02 Score=32.76 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 004917 354 TVSFHSFLILQDVASGFSSDCFDLCLIKMYK 384 (724)
Q Consensus 354 ~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ 384 (724)
++|.+|--+|..++..++..+++.++.-+..
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKG 406 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 6899999999999999887777777655443
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=49.79 E-value=2.5e+02 Score=32.94 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=50.9
Q ss_pred ccchhHHHHHHHHHHHcccC------C----CCCccchHHHHHHHHhhhhcccCCC------------cccchHHHHHHH
Q 004917 450 CSWQYANCIDLWVTYISHCI------H----DYDLQPLLYIIIQIINGMATLFPGP------------RYLPLRCKCIEW 507 (724)
Q Consensus 450 YNWQfvhsL~~Ws~VLs~~~------~----~s~L~pLiYPLVQVi~G~irLiPt~------------ry~PLRfhlir~ 507 (724)
.-+-...++.||+.+..... + ...++|.+-+|+++++..++ .|.. .|-.+|-.+...
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSE-QPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTS-CCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 44557899999998865221 1 12457888889999988885 4643 334577777777
Q ss_pred HHHHHhccC--cceechhHHHHhhc
Q 004917 508 LNHLSSSSG--IFIPVTSLMLDVLE 530 (724)
Q Consensus 508 L~~Ls~~t~--~fIPl~p~LleiL~ 530 (724)
|..++..-+ ++=++.+++-+.|.
T Consensus 445 l~~~~~~~~~~~l~~~~~~l~~~l~ 469 (971)
T 2x1g_F 445 FMYCYDVLNDYILEILAAMLDEAIA 469 (971)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777776544 22344555555553
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=47.44 E-value=2e+02 Score=27.61 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHhhhhhhhhh-cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004917 311 TDSEILAFSLNRLRTSIVFFA-AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 368 (724)
Q Consensus 311 td~~~l~~~L~~l~~llpy~~-~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~ 368 (724)
++..+...++..+..+..-+. .|......++..++..++.....||-+|..+|..++.
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444444444444444332222 3566788899999999998888899999999988766
No 23
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=45.23 E-value=2.7e+02 Score=31.18 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcch-HHHHHHHHH---HHHhhc---CCCch-hHHHHHHHHHHHHhc
Q 004917 298 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFP-LLIRRLIKI---AVHLWA---TGEET-VSFHSFLILQDVASG 369 (724)
Q Consensus 298 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~-kl~k~llK~---lv~lWs---~~~e~-vrv~AFl~Lr~l~~~ 369 (724)
.|..+++++|...+..+++.++|.-+..++.- -+|- .+++-|.+. .-.+|. .+++. ...+||.++-.++..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~-~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhc-CcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 56678999999999999999999877765432 1111 222222210 111332 33443 556777776666543
Q ss_pred cCcchHHHHHHHHHH--HHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHH-----HHHHHHHhhh
Q 004917 370 FSSDCFDLCLIKMYK--AFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINN-----LSRILQLGLQ 439 (724)
Q Consensus 370 ~~~~~le~~LK~~Y~--~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQ-----LAIhLRna~~ 439 (724)
.+. -+..+...+. -|+..-+ ++...+.--.--+|+.+|... -.|+.+|.-.+. |--.+|+++.
T Consensus 156 ~~~--~~~~l~~l~~~~~~~~~L~--~~~~~~~~~i~v~~L~~Ll~~---~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 156 GLH--NVKLVEKLLKNNNLINILQ--NIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp TTC--CHHHHHHHHHCHHHHHHHH--CTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred CCc--cHhHHHHHhhhHHHHHHhc--cccCCchHHHHHHHHHHHhcc---hhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 322 1334444443 3333322 222223322567888888876 468888864443 3334566653
No 24
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=44.79 E-value=30 Score=38.90 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=68.8
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHH
Q 004917 326 SIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLR 405 (724)
Q Consensus 326 llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMk 405 (724)
+-.|+-.||.+...-+.+++.|.-..+..+|+.|.=-|=.+|+.---+-.-.+|-++. +..--.-++..+
T Consensus 52 I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL----------qtdd~~E~~~V~ 121 (507)
T 3u0r_A 52 IPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL----------QTDDSAEFNLVN 121 (507)
T ss_dssp HHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT----------TCCCHHHHHHHH
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH----------hccchHHHHHHH
Confidence 4568999999999999999999998888899988655555555400111222332222 223445678889
Q ss_pred HHHHHHhcCCccchhHHHHHHHHH
Q 004917 406 NSFVELCSQDLLRSSNKAKVSINN 429 (724)
Q Consensus 406 Ns~~EL~~lD~~~sYq~AF~yIRQ 429 (724)
||+++|+-+|+..+-.--|.-|.+
T Consensus 122 ~sL~sllk~Dpk~tl~~lf~~i~~ 145 (507)
T 3u0r_A 122 NALLSIFKMDAKGTLGGLFSQILQ 145 (507)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHcc
Confidence 999999999999999988888766
No 25
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=43.61 E-value=4.5e+02 Score=30.62 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhH---HHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004917 355 VSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQ---FLRNSFVELCSQDLLRSSNKAKVSINNLS 431 (724)
Q Consensus 355 vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~In---fMkNs~~EL~~lD~~~sYq~AF~yIRQLA 431 (724)
.|..+.-+|+.++...+..+++.++..+-.. +.+. .+...|..+. +.-.+++|-+.-+.. . ++-++-
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~-l~~~--~~~~~w~~~eaal~al~~i~~~~~~~~~-~------~l~~l~ 492 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRL-LTSS--EEPYSWQHTEALLYGFQSIAETIDVNYS-D------VVPGLI 492 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-HHTC--CCSCCHHHHHHHHHHHHHHTTSCCSSCC-S------HHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HHhc--CCCCchHHHHHHHHHHHHHHhhcCchhh-H------HHHHHH
Confidence 4666777788888777766666665544333 2211 1122343333 334444443322211 1 112211
Q ss_pred HHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHH
Q 004917 432 RILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHL 511 (724)
Q Consensus 432 IhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~L 511 (724)
-.|-+ +.. +. .. .-...+.+|.=|+..+..+. ..|.+++. .++..+. . -+++-+++.+|.+|
T Consensus 493 ~~l~~-l~~---~~-~~-vr~~~~~~l~~~~~~l~~~~--~~l~~vl~----~l~~~l~---~---~~V~~~A~~al~~l 554 (963)
T 2x19_B 493 GLIPR-ISI---SN-VQ-LADTVMFTIGALSEWLADHP--VMINSVLP----LVLHALG---N---PELSVSSVSTLKKI 554 (963)
T ss_dssp HHGGG-SCC---CS-HH-HHHHHHHHHHHTHHHHHHCH--HHHTTTHH----HHHHHTT---C---GGGHHHHHHHHHHH
T ss_pred HHHHh-CCC---Cc-HH-HHHHHHHHHHHHHHHHHhCH--HHHHHHHH----HHHHHhC---C---chHHHHHHHHHHHH
Confidence 11110 111 00 01 12345556666777776542 23444444 4443332 1 47899999999999
Q ss_pred HhccCc-ceechhHHHHhhc
Q 004917 512 SSSSGI-FIPVTSLMLDVLE 530 (724)
Q Consensus 512 s~~t~~-fIPl~p~LleiL~ 530 (724)
++.++. +.|.++-|+..|.
T Consensus 555 ~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 555 CRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp HHHTGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 987654 4466555555443
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=42.08 E-value=4.3e+02 Score=29.95 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred CccchHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-CcceechhHHHHhhcc
Q 004917 473 DLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS-GIFIPVTSLMLDVLEY 531 (724)
Q Consensus 473 ~L~pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t-~~fIPl~p~LleiL~s 531 (724)
.++|.+-.+++.++..+.- +..-..+|-.++..+-+|+... +.|.|.+|.++..|..
T Consensus 684 ~~~~~~~~i~~~l~~~l~~--~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 684 NIIPFCDEVMQLLLENLGN--ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp GGHHHHHHHHHHHHHHHTC--TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhCC--ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 5777777777777766542 1122458888888888887643 3577877777777654
No 27
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=40.05 E-value=40 Score=31.07 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhH
Q 004917 560 RNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNI 625 (724)
Q Consensus 560 ~~yqd~v~e~~~eLL~e~~~~~s~sIaFPEL~~P~ii~LKr~~K~~k~~~~~~~ik~Lv~kie~n~ 625 (724)
..+...-...++.+|..|+ +.-|+|||+.+ =+.-...+++.+..+.....|+.+|..|.+-.
T Consensus 25 epkKgdYagg~ikiL~~F~---~G~iGYPevsL-RLAGEEAnl~~sG~E~~keaIHeiIK~IreA~ 86 (151)
T 3faj_A 25 EPKKGDYAGGAVKILDMFE---NGQLGYPEVTL-KLAGEEANARRAGDERTKEAIHAIVKMISDAM 86 (151)
T ss_dssp --CTTCHHHHHHHHHHHHH---TTCCEETHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHH---cCCCCCceeee-hhcchhhhhcccChHHHHHHHHHHHHHHHHHh
Confidence 3344445556788999885 57899999974 44556677777777788888888888887765
No 28
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.78 E-value=2.4e+02 Score=27.77 Aligned_cols=96 Identities=11% Similarity=0.229 Sum_probs=62.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcc----hHHHHHHHH------------HHHHhhcCCCchhHHHHHHH
Q 004917 299 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAF----PLLIRRLIK------------IAVHLWATGEETVSFHSFLI 362 (724)
Q Consensus 299 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f----~kl~k~llK------------~lv~lWs~~~e~vrv~AFl~ 362 (724)
|...++.-|..+.|++-..+.-+-+....+++..- +++.|.+.| .+-.+|.++....|.+|...
T Consensus 5 ~~~~i~~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 5 FVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDI 84 (232)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678888999999998887666665544444332 356666655 34559998876799999998
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHH
Q 004917 363 LQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFL 404 (724)
Q Consensus 363 Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfM 404 (724)
+......+....++ .+..||.. .++|..+-..
T Consensus 85 l~~~~k~~~~~~l~-----~~~~~l~~-----~~nWd~~D~~ 116 (232)
T 3jxy_A 85 MQKYKKHINETHIP-----FLEELIVT-----KSWWDSVDSI 116 (232)
T ss_dssp HHHTGGGCCGGGHH-----HHHHHHTS-----SCCHHHHHHH
T ss_pred HHHHHHhCCHHHHH-----HHHHHHcc-----CCChHHHHHh
Confidence 88655444444443 23456652 4567766544
No 29
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.07 E-value=3.9e+02 Score=32.84 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHH---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 313 SEILAFSLNRLRTSIVFFAAFPLLI---RRLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 313 ~~~l~~~L~~l~~llpy~~~f~kl~---k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
..++..+|..+..++.|+-. .-+. ..++..++.+.+ ...+|.+|.-||..++...
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 35777788888777666432 1111 136666666654 4679999999999999865
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=38.62 E-value=3.4e+02 Score=27.76 Aligned_cols=151 Identities=12% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHH-----HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchH
Q 004917 301 RSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLI-----RRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCF 375 (724)
Q Consensus 301 ~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~-----k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~l 375 (724)
..++.||..-++..+...++..|..++. .++... ...+..++.+..+++..++.-|-.+|.+++... ....
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~---~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~ 202 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVR---EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHK 202 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHc---CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHH
Confidence 3456666654456666666666655431 122211 135567778888777778887777888887763 3333
Q ss_pred HHHHH-HHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHH----HHHHHHHhhhh-chhhhhhhc
Q 004917 376 DLCLI-KMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINN----LSRILQLGLQT-KKKEAVKKI 449 (724)
Q Consensus 376 e~~LK-~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQ----LAIhLRna~~~-k~Ke~~k~V 449 (724)
+.+.. ++-..+|.--+..++ ..+.-.-.++..|... .+.+....++ |...|+..+.. +.+|+++.+
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~---~v~~~al~aL~~l~~~-----~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~ 274 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCSLVTD-----FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEE 274 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCS---THHHHHHHHHHHHHTT-----CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCh---hHHHHHHHHHHHHHhC-----ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHH
Confidence 32221 222222322221111 1111112222222221 2333333332 45556555443 236777777
Q ss_pred ccchhHHHHHHHHHHHcc
Q 004917 450 CSWQYANCIDLWVTYISH 467 (724)
Q Consensus 450 YNWQfvhsL~~Ws~VLs~ 467 (724)
|.. |..+|....+.
T Consensus 275 ~~~----~~~il~~~f~~ 288 (296)
T 1xqr_A 275 LEF----CEKLLQTCFSS 288 (296)
T ss_dssp HHH----HHHHHHHHCC-
T ss_pred HHH----HHHHHHHHcCC
Confidence 743 77888887753
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=36.50 E-value=3e+02 Score=29.50 Aligned_cols=70 Identities=19% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 004917 300 LRSTLFMLNQATDSEILAFSLNRLRTSIVFF-AAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASG 369 (724)
Q Consensus 300 l~sll~LL~~ltd~~~l~~~L~~l~~llpy~-~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~ 369 (724)
+..++.+|..-++..+...++..|..+...- ..-......++..++.+-.+++..++..|..+|.+++..
T Consensus 204 l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 204 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 4455666644456777766666665543321 011123355677777777777778898888899998854
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=32.46 E-value=3.2e+02 Score=29.41 Aligned_cols=71 Identities=7% Similarity=-0.007 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 299 YLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA--FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 299 yl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~--f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
.+..++.+|.. ++.++...++..|..+...-.+ -......++..++.+..+++..++..|..+|.+++...
T Consensus 216 ~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 216 AMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp CHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 34556777766 6777777777666665422100 11234566777888887777789999999999998653
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=31.87 E-value=3.8e+02 Score=29.09 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=48.0
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHH-HHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccch
Q 004917 341 IKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLI-KMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRS 419 (724)
Q Consensus 341 lK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK-~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~s 419 (724)
+-.++.+-.++...++-.|.-+|.+|+... ..+.+.++. +....++.-....+. .-..+.+++|++.-|..+.....
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDL-STLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccch-hHhHHHHHHHHHHHHHHHHhccc
Confidence 445666677777788888888999998643 233333332 122222322222111 11234455666555555433332
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 004917 420 SNKAKVSINNLSRILQLGLQT 440 (724)
Q Consensus 420 Yq~AF~yIRQLAIhLRna~~~ 440 (724)
....+..++++--.|-..+.+
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~ 262 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHH 262 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTS
T ss_pred chhhHHHHhhHHHHHHHHhcC
Confidence 333344444443344444443
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.86 E-value=1.4e+02 Score=28.68 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhh---hcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcch
Q 004917 298 SYLRSTLFMLNQATDSEILAFSLNRLRTSIVFF---AAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDC 374 (724)
Q Consensus 298 syl~sll~LL~~ltd~~~l~~~L~~l~~llpy~---~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~ 374 (724)
..+..++..|.+ .++.+=..++.-|..++-.+ ..+...+..++..++.+...+...+|-+|+-+|-.++...+...
T Consensus 133 ~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 133 AQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 344445555543 34555555555554433222 12455677888888888887788899999999999988766543
Q ss_pred H
Q 004917 375 F 375 (724)
Q Consensus 375 l 375 (724)
+
T Consensus 212 ~ 212 (242)
T 2qk2_A 212 V 212 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=27.41 E-value=98 Score=24.52 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcc
Q 004917 193 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 230 (724)
Q Consensus 193 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~ 230 (724)
.||...|..|...+....+...+++.+.++|++.....
T Consensus 45 ~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~~~~~~a~ 82 (103)
T 2oxo_A 45 DITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAI 82 (103)
T ss_dssp GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998777788889888888887766553
No 36
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=26.02 E-value=53 Score=29.02 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 004917 562 FREDCVFSAIELLSAHFAQWSYHISFPEL 590 (724)
Q Consensus 562 yqd~v~e~~~eLL~e~~~~~s~sIaFPEL 590 (724)
--|-++++++++|.||+.+-...|+.||-
T Consensus 97 aldvlweeflevlkeyytlsgteislpek 125 (135)
T 3dt5_A 97 ALDVLWEEFLEVLKEYYTLSGTEISLPEK 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcccCcEecCCCC
Confidence 34778999999999999999999999984
No 37
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=24.09 E-value=16 Score=43.27 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhch---HHHHHHH
Q 004917 5 GKKARKFAKKNLQ---SVLKRKR 24 (724)
Q Consensus 5 ~K~tkkF~~k~L~---~~~~~rk 24 (724)
+|..|.|..++|. +++.+|=
T Consensus 610 KKsske~ii~QL~sl~~tl~e~I 632 (956)
T 4aco_A 610 KKSSRGYILHQLNLFKITLDERI 632 (956)
T ss_dssp -----------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 4457788766543 5555543
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=24.08 E-value=4.5e+02 Score=26.96 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhh--hhhcchHHHH--HHHHHHHHhhcCC-CchhHHHH
Q 004917 285 NNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIV--FFAAFPLLIR--RLIKIAVHLWATG-EETVSFHS 359 (724)
Q Consensus 285 ~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llp--y~~~f~kl~k--~llK~lv~lWs~~-~e~vrv~A 359 (724)
.+.+|...... +..++++|. -.|+++....+..|+.++. +-.....+.+ .++..++.+..++ ...+|..|
T Consensus 11 ~~~~w~~~~~~----l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a 85 (450)
T 2jdq_A 11 NNMEMAPGGVI----TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85 (450)
T ss_dssp ---------------CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHH
T ss_pred hHHhhcccccc----HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHH
Confidence 34567654422 234455553 3566666667777766542 1111122333 5788888888887 56899999
Q ss_pred HHHHHHHHhc
Q 004917 360 FLILQDVASG 369 (724)
Q Consensus 360 Fl~Lr~l~~~ 369 (724)
.-+|.+++..
T Consensus 86 ~~~L~~l~~~ 95 (450)
T 2jdq_A 86 AWVLTNIASG 95 (450)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=23.52 E-value=9.8e+02 Score=28.66 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHH--hhcCCCchhHHHHHHHHHHHHhccCc---chHHHHHHHHHHHH
Q 004917 312 DSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVH--LWATGEETVSFHSFLILQDVASGFSS---DCFDLCLIKMYKAF 386 (724)
Q Consensus 312 d~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~--lWs~~~e~vrv~AFl~Lr~l~~~~~~---~~le~~LK~~Y~~y 386 (724)
.+.+....+.-+..+..|+...|..+..+|..++. --..++..||..|...++++|...+. ++++.+|..+-..+
T Consensus 508 hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL 587 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLL 587 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhh
Confidence 35555566666777888999889877777777666 44445567898888888888886653 55666653332211
Q ss_pred HhhcccCCc-c-------------chhhhHHHHHHHHHHh---cCCccchhHHHHHHHHHHHHHHHH----hhhhchhhh
Q 004917 387 IGHCKFAEP-A-------------LFKHLQFLRNSFVELC---SQDLLRSSNKAKVSINNLSRILQL----GLQTKKKEA 445 (724)
Q Consensus 387 v~~~k~t~~-~-------------tl~~InfMkNs~~EL~---~lD~~~sYq~AF~yIRQLAIhLRn----a~~~k~Ke~ 445 (724)
.......+. . +....-.+-.++.=|. +.++. .-..|+++|.--|=+ .+...++..
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e----~~~~~l~~ll~pl~~~l~~~l~~~~~~~ 663 (980)
T 3ibv_A 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPE----EQALYCDSLINALIGKANAALSSDLSAL 663 (980)
T ss_dssp CCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred cCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 111110000 0 0111122222333232 22222 233466665444332 222211110
Q ss_pred hhhcccchhHHHHHHHHHHHcccCCC--CCccc---hHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhccCc-ce
Q 004917 446 VKKICSWQYANCIDLWVTYISHCIHD--YDLQP---LLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGI-FI 519 (724)
Q Consensus 446 ~k~VYNWQfvhsL~~Ws~VLs~~~~~--s~L~p---LiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t~~-fI 519 (724)
..+. -+|++=.|..-++.--++ ....| -+-+..++++-++.-.| ...+.|=.+.+.+-|+...-|. ..
T Consensus 664 -~~~~---~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~--~~~~irea~~~~~~r~i~~lg~~~~ 737 (980)
T 3ibv_A 664 -ENII---SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG--FNEDIRGAVRFTSGRIINVVGPDML 737 (980)
T ss_dssp -CHHH---HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC--CSHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred -cHHH---HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHccHhHH
Confidence 1111 566666676666642211 12233 22334444444333333 5567888888888887765544 55
Q ss_pred echhHHHHhhc
Q 004917 520 PVTSLMLDVLE 530 (724)
Q Consensus 520 Pl~p~LleiL~ 530 (724)
|++|-+++.|-
T Consensus 738 p~lp~~i~~ll 748 (980)
T 3ibv_A 738 PKVPQLISILL 748 (980)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666666553
No 40
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=23.40 E-value=1.2e+02 Score=24.94 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcc
Q 004917 193 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 230 (724)
Q Consensus 193 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~ 230 (724)
.||...|..|...+.+..+...++.++.++|++....-
T Consensus 43 ~It~~~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~ 80 (111)
T 2kiw_A 43 TIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAY 80 (111)
T ss_dssp GCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999998777788999988888887766543
No 41
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=23.00 E-value=5e+02 Score=24.83 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCHHHHHHHHHHHHHHh
Q 004917 194 LTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREA 261 (724)
Q Consensus 194 lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~e~~~~~~~~~ky~I~d~~VFn~vv~~~L~~l 261 (724)
--.+.+.+....+.++++...+.-=+..+|.|.+ +++..|...|+...++.+
T Consensus 22 F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n----------------~s~~ev~~~v~~a~l~~~ 73 (189)
T 1paq_A 22 FEKEGIATVERAMENNHDLDTALLELNTLRMSMN----------------VTYHEVRIATITALLRRV 73 (189)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHHHHH
Confidence 4567888888889999999988888888888754 555677777776666554
No 42
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=22.86 E-value=1.2e+02 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhc
Q 004917 193 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYG 229 (724)
Q Consensus 193 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~ 229 (724)
.||...|..|...+.+..+...+++++..++++..+.
T Consensus 50 ~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~A 86 (112)
T 3lys_A 50 EITASSYQRALNKFAETHAKASTKGFHTRVRASIQCL 86 (112)
T ss_dssp TCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4899999999999987778877777776666555443
No 43
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=21.00 E-value=2.3e+02 Score=27.12 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=56.0
Q ss_pred hhhhHHHHHHHHHHhcCCccchhHHHHH-HHHHHHHHHHHhhhh---chhhhhhhcccchhHHHHHHHHHHHcccCCCCC
Q 004917 398 FKHLQFLRNSFVELCSQDLLRSSNKAKV-SINNLSRILQLGLQT---KKKEAVKKICSWQYANCIDLWVTYISHCIHDYD 473 (724)
Q Consensus 398 l~~InfMkNs~~EL~~lD~~~sYq~AF~-yIRQLAIhLRna~~~---k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~ 473 (724)
-+....|+...-||- .-|+.+|. .++||.+..+++... =-.+-|..=.||.=|=+|-.++..|+..|....
T Consensus 53 ~~v~~~Lr~~gdele-----~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIVaLfaF~g~La~~~~~~~ 127 (177)
T 2y6w_A 53 DPLHQAMRAAGDEFE-----TRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKE 127 (177)
T ss_dssp SHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHH-----HHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 344566666666663 33888887 788888765555321 113445544699999999999999998775556
Q ss_pred ccchHHHHHHHHh
Q 004917 474 LQPLLYIIIQIIN 486 (724)
Q Consensus 474 L~pLiYPLVQVi~ 486 (724)
+.+++..|+.-+.
T Consensus 128 ~~~~v~~I~~~~~ 140 (177)
T 2y6w_A 128 MEPLVGQVQEWMV 140 (177)
T ss_dssp CTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 6666666665544
No 44
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.85 E-value=4.8e+02 Score=25.65 Aligned_cols=122 Identities=9% Similarity=0.054 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHhhhhhhhhh--cch-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCc----chHHHHHHHHH
Q 004917 311 TDSEILAFSLNRLRTSIVFFA--AFP-LLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSS----DCFDLCLIKMY 383 (724)
Q Consensus 311 td~~~l~~~L~~l~~llpy~~--~f~-kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~----~~le~~LK~~Y 383 (724)
++..+....+..|..+.--+. .|. +....++-.++.........|+-+|..+|..++...++ ++++.+|..+.
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~ 152 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 344455566666666665554 677 78888999999999888888988999999999887632 34777777776
Q ss_pred HHHHhhcccCCc-cchhhhHHHHHHHHHHhcCCccchhHHHHHHH-HHHHHHHHHhhhhc
Q 004917 384 KAFIGHCKFAEP-ALFKHLQFLRNSFVELCSQDLLRSSNKAKVSI-NNLSRILQLGLQTK 441 (724)
Q Consensus 384 ~~yv~~~k~t~~-~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yI-RQLAIhLRna~~~k 441 (724)
.. +++. ++ -....++|+..|+-. ++-.+ ..+ . -|+ .++.-+|-+.|...
T Consensus 153 ~~-l~~k---~~~vk~~al~~l~~~~~~-~~~~~-~~l--~-~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 153 EH-MKHK---TPQIRMECTQLFNASMKE-EKDGY-STL--Q-RYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HH-TTCS---SHHHHHHHHHHHHHHHHH-CCSCS-HHH--H-HHHTTTHHHHHHHHHTCS
T ss_pred HH-HcCC---ChHHHHHHHHHHHHHHHH-cCCcc-hhH--H-HHHHHHHHHHHHHHhcCC
Confidence 44 3332 11 122334455444432 11100 111 1 266 67777777777643
No 45
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=20.84 E-value=1.1e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhhcc
Q 004917 193 LLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGA 230 (724)
Q Consensus 193 ~lT~~~v~~W~~~l~~~~sl~alr~lv~AFRaA~~~~~ 230 (724)
.||...|..|...+.+..+...+++++.++|++..+..
T Consensus 50 ~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~A~ 87 (116)
T 2kj5_A 50 DVKPRHIDDVLKAVMKRGAPSIANDTLRWLKRMFNYAI 87 (116)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 48999999999998776788999988888887776653
No 46
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=20.20 E-value=3.5e+02 Score=24.72 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHH-----HHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 301 RSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIR-----RLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 301 ~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k-----~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
..++.+|.. .++++...++..|..+.. ..+.... ..+..++.+..+++..+|..|..+|.+|+...
T Consensus 57 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 57 PALVQLLSS-PNEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (210)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC
Confidence 344555543 245555555555554321 1122111 24567777778887788988989999998743
Done!