Query 004917
Match_columns 724
No_of_seqs 207 out of 292
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004917.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004917hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qgra_ a.118.1.1 (A:) Importi 68.3 72 0.0052 32.9 19.9 234 293-530 167-461 (876)
2 d1ho8a_ a.118.1.9 (A:) Regulat 68.2 10 0.00075 39.8 10.5 155 299-464 75-253 (477)
3 d2bpta1 a.118.1.1 (A:1-861) Im 68.1 71 0.0051 32.8 18.4 41 333-373 633-673 (861)
4 d1wa5c_ a.118.1.1 (C:) Exporti 67.6 55 0.004 34.8 17.0 175 334-526 491-687 (959)
5 d1ibrb_ a.118.1.1 (B:) Importi 64.8 58 0.0042 30.6 17.6 215 296-514 169-437 (458)
6 d1u6gc_ a.118.1.2 (C:) Cullin- 54.8 1.1E+02 0.0081 33.4 16.9 180 332-529 38-219 (1207)
7 d2vgla_ a.118.1.10 (A:) Adapti 50.7 1.4E+02 0.01 30.5 18.6 103 264-372 55-173 (584)
8 d1u6gc_ a.118.1.2 (C:) Cullin- 45.0 1E+02 0.0073 33.7 14.4 98 292-389 124-222 (1207)
9 d1uw4b_ a.118.1.14 (B:) Regula 38.7 48 0.0035 30.9 9.0 126 294-431 2-130 (248)
10 d1i1ip_ d.92.1.5 (P:) Neurolys 21.7 35 0.0025 36.9 4.9 108 379-491 225-360 (665)
No 1
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.30 E-value=72 Score=32.94 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhh---hhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 004917 293 RPLIKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVF---FAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVAS 368 (724)
Q Consensus 293 ~~liKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy---~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~ 368 (724)
...+...+..+++.+..- ++.++....+..+...+.+ ..........+++.+..+.......+|..|+-++..++.
T Consensus 167 ~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~ 246 (876)
T d1qgra_ 167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333444455556655433 3345555555555544333 233344455677777777777777899999999999988
Q ss_pred ccCcchHH---HHHHHHHHHHHhhc---------------------------------cc---CCccc-hhhhHHHHHHH
Q 004917 369 GFSSDCFD---LCLIKMYKAFIGHC---------------------------------KF---AEPAL-FKHLQFLRNSF 408 (724)
Q Consensus 369 ~~~~~~le---~~LK~~Y~~yv~~~---------------------------------k~---t~~~t-l~~InfMkNs~ 408 (724)
.++..+.. ..+-.++....... +. .+.+. ....+.....+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (876)
T d1qgra_ 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 76533222 11111111111100 00 00000 01111111222
Q ss_pred HHHhc-------CCccchhHHHHHHHHHHHHHHHHhhhhchh---hhhhhcccchhHHHHHHHHHHHcccCCCCCccchH
Q 004917 409 VELCS-------QDLLRSSNKAKVSINNLSRILQLGLQTKKK---EAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLL 478 (724)
Q Consensus 409 ~EL~~-------lD~~~sYq~AF~yIRQLAIhLRna~~~k~K---e~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLi 478 (724)
.++.. -+....+..|...++.++.++.+.+...-- ...-.-.+|+..++.-+--..++..+....+.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 406 (876)
T d1qgra_ 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 22211 122234556666777777766654431110 11122367888776544434444444445677777
Q ss_pred HHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhcc-------CcceechhHHHHhhc
Q 004917 479 YIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSS-------GIFIPVTSLMLDVLE 530 (724)
Q Consensus 479 YPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~t-------~~fIPl~p~LleiL~ 530 (724)
..++..++..+. -| ....|-.++.+|.+++... ..+.|+.+.++..++
T Consensus 407 ~~~~~~l~~~l~-d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 461 (876)
T d1qgra_ 407 IQAMPTLIELMK-DP---SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHT-CS---SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC---ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc
Confidence 777777766553 22 2346777777787777543 234556677776665
No 2
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.16 E-value=10 Score=39.83 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhhhhhh---hhhcchHHH---HHHHHHH-HHhhcCCCc-hhHHHHHHHHHHHHhcc
Q 004917 299 YLRSTLFMLNQATDSEILAFSLNRLRTSIV---FFAAFPLLI---RRLIKIA-VHLWATGEE-TVSFHSFLILQDVASGF 370 (724)
Q Consensus 299 yl~sll~LL~~ltd~~~l~~~L~~l~~llp---y~~~f~kl~---k~llK~l-v~lWs~~~e-~vrv~AFl~Lr~l~~~~ 370 (724)
|..+++++|+.++.++++..+|.-+..++. +..++-.+. +..+... +++- .+++ -+-..||-.+..++...
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence 466788899999999999999987776541 111111111 1111111 1111 1222 35567787777777654
Q ss_pred Ccch-HHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHH-----HHHHHHHHHHHhhhhch--
Q 004917 371 SSDC-FDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKV-----SINNLSRILQLGLQTKK-- 442 (724)
Q Consensus 371 ~~~~-le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~-----yIRQLAIhLRna~~~k~-- 442 (724)
+... ....+... ..|++. .++....+....--+|+.+|... -.|+..|. +|-.|--.||+++.++.
T Consensus 154 ~~~~~~~e~l~~~-~~~l~~--l~~~~~~~~~~i~v~~lq~llr~---~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 154 LHNVKLVEKLLKN-NNLINI--LQNIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp TCCHHHHHHHHHC-HHHHHH--HHCTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred ccccchHHHHHHh-hHHHHH--hhcccccchHHHHHHHHHHHhcC---ccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence 3322 12222222 233333 23444455555667888888877 45776664 46668888998876431
Q ss_pred --------hhhhhhcccchhHHHHHHHHHH
Q 004917 443 --------KEAVKKICSWQYANCIDLWVTY 464 (724)
Q Consensus 443 --------Ke~~k~VYNWQfvhsL~~Ws~V 464 (724)
+-.+|. ||--++=+|.--
T Consensus 228 ~~~~~~~~~~~~Ql----~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 228 RIVATNSNHLGIQL----QYHSLLLIWLLT 253 (477)
T ss_dssp --------CCHHHH----HHHHHHHHHHHT
T ss_pred hhhcccCCCccHHH----HHHHHHHHHHHH
Confidence 223444 455666678543
No 3
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.10 E-value=71 Score=32.77 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcc
Q 004917 333 FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSD 373 (724)
Q Consensus 333 f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~ 373 (724)
|.+....++..++......+..+|..|+.++-.++...+..
T Consensus 633 ~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~ 673 (861)
T d2bpta1 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 34455667777777777888889999999999998876544
No 4
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=67.58 E-value=55 Score=34.82 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC--------------cchHHHHHHHHHHHHHhhcccCCccchh
Q 004917 334 PLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS--------------SDCFDLCLIKMYKAFIGHCKFAEPALFK 399 (724)
Q Consensus 334 ~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~--------------~~~le~~LK~~Y~~yv~~~k~t~~~tl~ 399 (724)
+.....++..++++-.+.+..||+.|-.+|++++.... .++++.++......+......+ ..+.
T Consensus 491 ~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~--~~~~ 568 (959)
T d1wa5c_ 491 KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP--EKLA 568 (959)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH--HHHT
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchh--hhHH
Confidence 56778899999998887777899999899999886432 3567777766666655543321 1111
Q ss_pred hhHHHHHH---HHHHhcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchhHH-HHHHHHHHHcccCCCCCcc
Q 004917 400 HLQFLRNS---FVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYAN-CIDLWVTYISHCIHDYDLQ 475 (724)
Q Consensus 400 ~InfMkNs---~~EL~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvh-sL~~Ws~VLs~~~~~s~L~ 475 (724)
...+.-++ +++.++-... . |.-++.-+|-+.+..-.++. .+=.+++ +++..+.++.... .+...
T Consensus 569 ~~~~ll~~l~~ii~~~~~~~~---~----~~~~i~~~l~~~~~~~~~~~----~~~~~~~~~~e~l~~l~~~~~-~~~~~ 636 (959)
T d1wa5c_ 569 ENEFLMRSIFRVLQTSEDSIQ---P----LFPQLLAQFIEIVTIMAKNP----SNPRFTHYTFESIGAILNYTQ-RQNLP 636 (959)
T ss_dssp SCHHHHHHHHHHHHHHTTTTG---G----GHHHHHHHHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHTSC-GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHHHhcC-chhHH
Confidence 11122222 2333332211 1 22233333333332111111 1112222 3345555554322 22333
Q ss_pred ---chHHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHHhc-cCcceechhHHH
Q 004917 476 ---PLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSS-SGIFIPVTSLML 526 (724)
Q Consensus 476 ---pLiYPLVQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~-t~~fIPl~p~Ll 526 (724)
+-++|+++-++. -....|+|--|.++..+.+.+.. +..|.|+++.++
T Consensus 637 ~l~~~l~p~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 687 (959)
T d1wa5c_ 637 LLVDSMMPTFLTVFS----EDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLL 687 (959)
T ss_dssp HHHHHHHHHHHHHHH----TTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHHHHh----ccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHh
Confidence 334555554443 23346777777777666665532 355677666654
No 5
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.81 E-value=58 Score=30.58 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhcC-CcHHHHHHHHHHhhhhhhhhh---cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccC
Q 004917 296 IKSYLRSTLFMLNQA-TDSEILAFSLNRLRTSIVFFA---AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFS 371 (724)
Q Consensus 296 iKsyl~sll~LL~~l-td~~~l~~~L~~l~~llpy~~---~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~ 371 (724)
+...+..+++.+..- ++.++....++.+..++.++. ........++..+..+..+....++..+|-+|..++..++
T Consensus 169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 248 (458)
T d1ibrb_ 169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248 (458)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 334445555555432 345566666666655544332 3344555677777777777777899999999999887554
Q ss_pred cch-------HHHHHHHH-H----------HHHHh------------hcc----cCCc------cchhhhHHHHHHHHHH
Q 004917 372 SDC-------FDLCLIKM-Y----------KAFIG------------HCK----FAEP------ALFKHLQFLRNSFVEL 411 (724)
Q Consensus 372 ~~~-------le~~LK~~-Y----------~~yv~------------~~k----~t~~------~tl~~InfMkNs~~EL 411 (724)
..+ +..++... . ..++. ... ...+ ........+...+.+.
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (458)
T d1ibrb_ 249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 328 (458)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 211 11111110 0 00000 000 0000 0112233334444444
Q ss_pred hcC-C------ccchhHHHHHHHHHHHHHHHHhhhhchhh---hhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHH
Q 004917 412 CSQ-D------LLRSSNKAKVSINNLSRILQLGLQTKKKE---AVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYII 481 (724)
Q Consensus 412 ~~l-D------~~~sYq~AF~yIRQLAIhLRna~~~k~Ke---~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPL 481 (724)
..- + ....+..|...++.++..+.+.+...--+ ..-.=-+|+..++-=+=-..++..|....++|.+..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i 408 (458)
T d1ibrb_ 329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 408 (458)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTH
T ss_pred hhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 331 1 11234455555555554443222110000 1111247887665211122344455556788888888
Q ss_pred HHHHhhhhcccCCCcccchHHHHHHHHHHHHhc
Q 004917 482 IQIINGMATLFPGPRYLPLRCKCIEWLNHLSSS 514 (724)
Q Consensus 482 VQVi~G~irLiPt~ry~PLRfhlir~L~~Ls~~ 514 (724)
+++++..++ -|. -++|...+.+|-+++..
T Consensus 409 ~~~l~~~l~-d~~---~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 409 MPTLIELMK-DPS---VVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHGGG-CSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCC---HHHHHHHHHHHHHHHHH
Confidence 888776554 233 35888888888888754
No 6
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.84 E-value=1.1e+02 Score=33.36 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHH
Q 004917 332 AFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVEL 411 (724)
Q Consensus 332 ~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL 411 (724)
.-....++++..++.+-.+....||-+|--||-.++...+...++.++..+......+... .+..+.+ -++.-+.+|
T Consensus 38 ~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~--~r~~~~~-~L~~i~~~l 114 (1207)
T d1u6gc_ 38 LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQ--LRDISSI-GLKTVIGEL 114 (1207)
T ss_dssp CCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSH--HHHHHHH-HHHHHHHHC
T ss_pred cChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchh--hhHHHHH-HHHHHHHhc
Confidence 3456678888889888888888899999999999999888877777776665543321111 1122222 223333344
Q ss_pred hcCCccchhHHHHHHHHHHHHHHHHhhhhchhhhhhhcccchhHHHHHHHHHHHcccCCCCCccchHHHHHHHHhhhhcc
Q 004917 412 CSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATL 491 (724)
Q Consensus 412 ~~lD~~~sYq~AF~yIRQLAIhLRna~~~k~Ke~~k~VYNWQfvhsL~~Ws~VLs~~~~~s~L~pLiYPLVQVi~G~irL 491 (724)
.......+ ..-..++++.-.|.+++.......++ ..++++-+.+++... ..+.|....+++.++-.+.
T Consensus 115 ~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~v~-------~~al~~l~~l~~~~g--~~l~~~~~~il~~l~~~l~- 182 (1207)
T d1u6gc_ 115 PPASSGSA--LAANVCKKITGRLTSAIAKQEDVSVQ-------LEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLT- 182 (1207)
T ss_dssp C-----CC--THHHHHHHHHHHHHHHHSCCSCHHHH-------HHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGG-
T ss_pred ccccccch--hHHHHHHHHHHHHHHhhcCCCCHHHH-------HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHhC-
Confidence 32222221 22345666666777766654322221 346777777777543 3566666666665543322
Q ss_pred cCCCcccchHHHHHHHHHHHHhccC--cceechhHHHHhh
Q 004917 492 FPGPRYLPLRCKCIEWLNHLSSSSG--IFIPVTSLMLDVL 529 (724)
Q Consensus 492 iPt~ry~PLRfhlir~L~~Ls~~t~--~fIPl~p~LleiL 529 (724)
+++. -.|-..+..|-.|+...+ .|-++.+.+++.|
T Consensus 183 --~~~~-~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l 219 (1207)
T d1u6gc_ 183 --SPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL 219 (1207)
T ss_dssp --CSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHH
T ss_pred --CCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 1111 145555555555543322 2333444444444
No 7
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.70 E-value=1.4e+02 Score=30.54 Aligned_cols=103 Identities=10% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHHHhCCcCCCCCccccccCCCCcchhhhHHHHHHHHHH-------HH-----HhhcC--CcHHHHHHHHHHhhhhhhh
Q 004917 264 VFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRST-------LF-----MLNQA--TDSEILAFSLNRLRTSIVF 329 (724)
Q Consensus 264 ~l~~~l~~k~~~~k~~~~~~~~~~kw~kl~~liKsyl~sl-------l~-----LL~~l--td~~~l~~~L~~l~~llpy 329 (724)
++-+++|+..+.+-..+..+..++++. .+.+.--|+..+ +- +.+.+ +++.+-.++|+.+..
T Consensus 55 ~y~~mlG~dv~~~~~~vi~l~ss~~~~-~Kr~gYL~l~~~~~~~~el~~L~iNtl~KDL~s~n~~ir~lALr~L~~---- 129 (584)
T d2vgla_ 55 LFIFLLGHDIDFGHMEAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN---- 129 (584)
T ss_dssp HHHHHHSCCCCSCHHHHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCCCchHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc----
Confidence 344678987764444455555555542 344433332221 11 11122 334455555555544
Q ss_pred hhcchHHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHhccCc
Q 004917 330 FAAFPLLIRRLIKIAVHLWATGE--ETVSFHSFLILQDVASGFSS 372 (724)
Q Consensus 330 ~~~f~kl~k~llK~lv~lWs~~~--e~vrv~AFl~Lr~l~~~~~~ 372 (724)
+..+.+...++..+..+-..+. .-||-.|.+++.++....|.
T Consensus 130 -i~~~~i~~~l~~~V~k~l~~~d~~p~VRk~A~l~l~ki~~~~pd 173 (584)
T d2vgla_ 130 -VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 173 (584)
T ss_dssp -HCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred -CCCHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhChh
Confidence 2346666666666666555433 46999999999999887654
No 8
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.04 E-value=1e+02 Score=33.71 Aligned_cols=98 Identities=6% Similarity=0.019 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhc-chHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc
Q 004917 292 VRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAA-FPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF 370 (724)
Q Consensus 292 l~~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~-f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~ 370 (724)
...+++.++.-+...+..-.+..+-.-++.-+..++..+.. +......++..++....++...+|..|..+|..++...
T Consensus 124 ~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~ 203 (1207)
T d1u6gc_ 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 203 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 35566666777777776666666655555545443322211 22334678888888888888889999999999999988
Q ss_pred CcchHHHHHHHHHHHHHhh
Q 004917 371 SSDCFDLCLIKMYKAFIGH 389 (724)
Q Consensus 371 ~~~~le~~LK~~Y~~yv~~ 389 (724)
+...++.++..+-..+..+
T Consensus 204 ~~~~~~~~~~~ll~~l~~~ 222 (1207)
T d1u6gc_ 204 GNIVFVDLIEHLLSELSKN 222 (1207)
T ss_dssp ----CTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHccC
Confidence 7777766666655555443
No 9
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.72 E-value=48 Score=30.88 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhcc---
Q 004917 294 PLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGF--- 370 (724)
Q Consensus 294 ~liKsyl~sll~LL~~ltd~~~l~~~L~~l~~llpy~~~f~kl~k~llK~lv~lWs~~~e~vrv~AFl~Lr~l~~~~--- 370 (724)
|.+..|+.-+ +++.+|... +..++..+..+ +| ..+.....+++.+++.|.+..+.+...|=++ -.|+...
T Consensus 2 ~p~~~flr~l--i~n~Ls~~n-~~~i~~~i~kl-~~--~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~-a~L~~~~~~f 74 (248)
T d1uw4b_ 2 PPLQEYVRKL--LYKDLSKVT-TEKVLRQMRKL-PW--QDQEVKDYVICCMINIWNVKYNSIHCVANLL-AGLVLYQEDV 74 (248)
T ss_dssp CHHHHHHHHH--HHTTCSTTS-HHHHHHHHHTS-CT--TSHHHHHHHHHHHHCGGGSCGGGHHHHHHHH-HHHTTTCHHH
T ss_pred CcHHHHHHHH--HHhhCCHhH-HHHHHHHHHHC-CC--CCHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHHHHHhHHH
Confidence 4567788887 468887654 33455566554 33 4688899999999999987766655443332 1122222
Q ss_pred CcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchhHHHHHHHHHHH
Q 004917 371 SSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLS 431 (724)
Q Consensus 371 ~~~~le~~LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sYq~AF~yIRQLA 431 (724)
...+++.+.-.+-..+-.+-....-+.+..| ..+.|||.... ++..+.|..|++|-
T Consensus 75 ~~~~id~l~e~f~~~~e~~~~~~~~r~~~~v----~figeLy~~~~-v~~~~i~~~l~~Ll 130 (248)
T d1uw4b_ 75 GIHVVDGVLEDIRLGMEVNQPKFNQRRISSA----KFLGELYNYRM-VESAVIFRTLYSFT 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH----HHHHHHHHTTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHcc-CcHHHHHHHHHHHH
Confidence 2233444444333333332221111222222 34567776533 45566666666663
No 10
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.72 E-value=35 Score=36.86 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCccchh----------HHHHHHHHHHHHHHHHhhhh--------
Q 004917 379 LIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSS----------NKAKVSINNLSRILQLGLQT-------- 440 (724)
Q Consensus 379 LK~~Y~~yv~~~k~t~~~tl~~InfMkNs~~EL~~lD~~~sY----------q~AF~yIRQLAIhLRna~~~-------- 440 (724)
=+.+|.+|...|..-|...+..|--.++..+.|+|-..-+.| ..+..++..|+..+|-....
T Consensus 225 R~~~~~a~~~r~~~~N~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~~~ 304 (665)
T d1i1ip_ 225 RRKMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSL 304 (665)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhcCcHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 457899998877766777788888899999999998755544 45889999999888865432
Q ss_pred chhhh----h---hhcccchhHHHHHHHHHHHccc---CCCCCccchHHHHHHHHhhhhcc
Q 004917 441 KKKEA----V---KKICSWQYANCIDLWVTYISHC---IHDYDLQPLLYIIIQIINGMATL 491 (724)
Q Consensus 441 k~Ke~----~---k~VYNWQfvhsL~~Ws~VLs~~---~~~s~L~pLiYPLVQVi~G~irL 491 (724)
++++. + ..|.-|-. .+|++-+... ..++.|+|- +||-.|+-|+..+
T Consensus 305 ~~~~~~~~~~~~~~~l~pWD~----~Yy~~k~r~~~~~~d~~~l~~Y-Fpl~~vl~gl~~l 360 (665)
T d1i1ip_ 305 KKKECEERGFEYDGKINAWDL----HYYMTQTEELKYSVDQESLKEY-FPIEVVTEGLLSI 360 (665)
T ss_dssp HHHHHHTTTCCCCSSCCHHHH----HHHHHHHHHHHSCCCHHHHGGG-CBHHHHHHHHHHH
T ss_pred HHHhhhhcCCCcccccCcccH----HHHHHHHHhhhccccccccccc-ccHHHHHHHHHHH
Confidence 11111 1 13666763 4566666542 133345554 3566666665544
Done!