BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004921
(723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/449 (53%), Positives = 332/449 (73%), Gaps = 6/449 (1%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325
VTF DV GA++A EL+EVV+FLK+P K+ +GA++PKG LLVGPPGTGKTLLARAVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXN 385
A VPFF + S+FVELFVGVGA+RVRDLF +AK+ APCIVFIDEIDAV +
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 386 DEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV 445
DEREQT+NQLL EMDGF G+IV+AATNRPD+LD ALLRPGRFD+++ VD PD+ GR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 446 KILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505
KIL++H+R K LA+DV+ E I++RTPGF GADL+NL+NEAA+LAAR +I+ + +A
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252
Query: 506 LERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRG-QAGGLTF 564
++R+IAGP +K+ ++S +K+++AYHEAGHA+V ++P +PV +ISIIPRG +A G T
Sbjct: 253 IDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTL 312
Query: 565 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMV 624
P E++ L SR+ L +++ LGGR AEEV+FG +VT+GA+ND + + +AR MV
Sbjct: 313 HLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 625 ERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQII 684
+ G S+++G +A G FLG++++ ++YS A +D EV+++V Y RAK+II
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEII 427
Query: 685 TTHIDILHKLAQLLIEKETVDGEEFMSLF 713
+ L + ++L+EKET++G+E +
Sbjct: 428 RKYRKQLDNIVEILLEKETIEGDELRRIL 456
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/449 (53%), Positives = 331/449 (73%), Gaps = 6/449 (1%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325
VTF DV GA++A EL+EVV+FLK+P K+ +GA++PKG LLVGPPGTG TLLARAVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXN 385
A VPFF + S+FVELFVGVGA+RVRDLF +AK+ APCIVFIDEIDAV +
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 386 DEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV 445
DEREQT+NQLL EMDGF G+IV+AATNRPD+LD ALLRPGRFD+++ VD PD+ GR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 446 KILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505
KIL++H+R K LA+DV+ E I++RTPGF GADL+NL+NEAA+LAAR +I+ + +A
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEA 252
Query: 506 LERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRG-QAGGLTF 564
++R+IAGP +K+ ++S +K+++AYHEAGHA+V ++P +PV +ISIIPRG +A G T
Sbjct: 253 IDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTL 312
Query: 565 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMV 624
P E++ L SR+ L +++ LGGR AEEV+FG +VT+GA+ND + + +AR MV
Sbjct: 313 HLPEEDKY---LVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 625 ERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQII 684
+ G S+++G +A G FLG++++ ++YS A +D EV+++V Y RAK+II
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEII 427
Query: 685 TTHIDILHKLAQLLIEKETVDGEEFMSLF 713
+ L + ++L+EKET++G+E +
Sbjct: 428 RKYRKQLDNIVEILLEKETIEGDELRRIL 456
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/460 (51%), Positives = 325/460 (70%), Gaps = 12/460 (2%)
Query: 251 FGRSKSK-FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVG 309
F +S+++ E P+ VTF DVAGA++AK EL+E+V+FLKNP ++ +GA+IPKG LLVG
Sbjct: 23 FTKSRARVLTEAPK--VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVG 80
Query: 310 PPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369
PPG GKT LARAVAGEA VPF + + S+FVE+FVGVGA+RVRDLFE AK APCIVFIDE
Sbjct: 81 PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 140
Query: 370 IDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGR 429
IDAV NDEREQT+NQLL EMDGF ++ ++V+AATNRPD+LD ALLRPGR
Sbjct: 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 200
Query: 430 FDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
FDRQ+ +D PDV GR +IL++H+RGK LA+DVD +++RTPGF GADL+NL+NEAA+LA
Sbjct: 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 260
Query: 490 ARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVA 549
AR ++I+ ++ +A +R++ P KK+ V+S +++ AYHEAGHAL + D V
Sbjct: 261 AREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVH 320
Query: 550 KISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGA 609
K++I+PRG+A L F P E + +SR L +Q+AVAL GR AEE++F ++VTTGA
Sbjct: 321 KVTIVPRGRA--LGFMMPRREDMLH--WSRKRLLDQIAVALAGRAAEEIVF--DDVTTGA 374
Query: 610 SNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEV 669
NDF Q + +AR+M+ +G + G VA + +LG Q YS TA +D V
Sbjct: 375 ENDFRQATELARRMITEWGMHPEFGPVAY-AVREDTYLGGYDVRQ--YSEETAKRIDEAV 431
Query: 670 RELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 709
R L+E Y R K ++ ++L ++A+ L+E+ET+ EEF
Sbjct: 432 RRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEF 471
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/460 (51%), Positives = 325/460 (70%), Gaps = 12/460 (2%)
Query: 251 FGRSKSK-FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVG 309
F +S+++ E P+ VTF DVAGA++AK EL+E+V+FLKNP ++ +GA+IPKG LLVG
Sbjct: 14 FTKSRARVLTEAPK--VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVG 71
Query: 310 PPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369
PPG GKT LARAVAGEA VPF + + S+FVE+FVGVGA+RVRDLFE AK APCIVFIDE
Sbjct: 72 PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 131
Query: 370 IDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGR 429
IDAV NDEREQT+NQLL EMDGF ++ ++V+AATNRPD+LD ALLRPGR
Sbjct: 132 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 191
Query: 430 FDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
FDRQ+ +D PDV GR +IL++H+RGK LA+DVD +++RTPGF GADL+NL+NEAA+LA
Sbjct: 192 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 251
Query: 490 ARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVA 549
AR ++I+ ++ +A +R++ P KK+ V+S +++ AYHEAGHAL + D V
Sbjct: 252 AREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVH 311
Query: 550 KISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGA 609
K++I+PRG+A L F P E + +SR L +Q+AVAL GR AEE++F ++VTTGA
Sbjct: 312 KVTIVPRGRA--LGFMMPRREDMLH--WSRKRLLDQIAVALAGRAAEEIVF--DDVTTGA 365
Query: 610 SNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEV 669
NDF Q + +AR+M+ +G + G VA + +LG Q YS TA +D V
Sbjct: 366 ENDFRQATELARRMITEWGMHPEFGPVAY-AVREDTYLGGYDVRQ--YSEETAKRIDEAV 422
Query: 670 RELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 709
R L+E Y R K ++ ++L ++A+ L+E+ET+ EEF
Sbjct: 423 RRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEF 462
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/253 (62%), Positives = 197/253 (77%), Gaps = 2/253 (0%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325
V F D+AG ++AK E+ E+VDFLK P++Y LGAKIPKG LLVGPPGTGKTLLA+AVAGE
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXX 384
A VPFFS S F+E+FVG+GASRVRDLFE AK +AP I+FIDEIDA+
Sbjct: 68 AHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSG 127
Query: 385 NDEREQTINQLLTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 443
NDEREQT+NQLL EMDGF S N+ VIVLAATNRP++LD AL+RPGRFDRQV VD+PD G
Sbjct: 128 NDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187
Query: 444 RVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503
RV+IL+VH +G LA DV+ +++++ T G GADL N++NEAA+LA R + KE+ + +
Sbjct: 188 RVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLK 247
Query: 504 DALERIIAGPEKK 516
+A+ER IAG EKK
Sbjct: 248 EAVERGIAGLEKK 260
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 318 bits (816), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 156/248 (62%), Positives = 192/248 (77%)
Query: 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326
TFADVAG D+AK E+ E+V++L+ P ++ LG KIPKG L+VGPPGTGKTLLA+A+AGEA
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 327 GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXND 386
VPFF+ + S+FVE+FVGVGASRVRD+FE+AK APCI+FIDEIDAV +D
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 387 EREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446
EREQT+NQ+L EMDGF GN G+IV+AATNRPDVLD ALLRPGRFDRQV V PDV GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 447 ILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506
IL+VH R LA D+D I+R TPGF+GADL NL+NEAA+ AAR + + +S E A
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 249
Query: 507 ERIIAGPE 514
++I+ G E
Sbjct: 250 DKIMMGLE 257
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 289 bits (739), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/256 (61%), Positives = 203/256 (79%), Gaps = 3/256 (1%)
Query: 251 FGRSKSK-FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVG 309
F +S+++ E P+ VTF DVAGA++AK EL+E+V+FLKNP ++ +GA+IPKG LLVG
Sbjct: 23 FTKSRARVLTEAPK--VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVG 80
Query: 310 PPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369
PPG GKT LARAVAGEA VPF + + S+FVE+FVGVGA+RVRDLFE AK APCIVFIDE
Sbjct: 81 PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 140
Query: 370 IDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGR 429
IDAV NDEREQT+NQLL EMDGF ++ ++V+AATNRPD+LD ALLRPGR
Sbjct: 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 200
Query: 430 FDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
FDRQ+ +D PDV GR +IL++H+RGK LA+DVD +++RTPGF GADL+NL+NEAA+LA
Sbjct: 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 260
Query: 490 ARRDLKEISKDEISDA 505
AR ++I+ ++ +A
Sbjct: 261 AREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 198/250 (79%), Gaps = 2/250 (0%)
Query: 256 SKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGK 315
S E P+ VTF DVAGA++AK EL+E+V+FLKNP ++ +GA+IPKG LLVGPPG GK
Sbjct: 5 SVLTEAPK--VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 316 TLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXX 375
T LARAVAGEA VPF + + S+FVE+FVGVGA+RVRDLFE AK APCIVFIDEIDAV
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122
Query: 376 XXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVT 435
NDEREQT+NQLL EMDGF ++ ++V+AATNRPD+LD ALLRPGRFDRQ+
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 436 VDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495
+D PDV GR +IL++H+RGK LA+DVD +++RTPGF GADL+NL+NEAA+LAAR +
Sbjct: 183 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRR 242
Query: 496 EISKDEISDA 505
+I+ ++ +A
Sbjct: 243 KITMKDLEEA 252
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 133/260 (51%), Positives = 181/260 (69%), Gaps = 3/260 (1%)
Query: 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
GV+F DVAG +AKLE++E VD+LK+P+++ LGAK+PKG LL+GPPG GKTLLA+AVA
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXX- 383
EA VPF + A +EFVE+ G+GA+RVR LF++A+++APCIV+IDEIDAV
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 384 XNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 443
N E EQT+NQLL EMDG VIVLA+TNR D+LD AL+RPGR DR V +D P +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 444 RVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501
R +I + H + L + F ++++ TPGF+GAD+ N+ NEAA+ AAR +
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
Query: 502 ISDALERIIAGPEKKNAVVS 521
A+ER++AG KK+ ++S
Sbjct: 242 FEYAVERVLAGTAKKSKILS 261
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 167/258 (64%), Gaps = 2/258 (0%)
Query: 255 KSKFQEVPET-GVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPG 312
++K EV E V + D+ G ++ E++EVV+ LK+P+ + +G + PKG LL GPPG
Sbjct: 2 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 61
Query: 313 TGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372
TGKTLLA+AVA E F SE V+ F+G GAS V+D+F+ AK KAP I+FIDEIDA
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 373 VXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDR 432
+ + E ++T+ QLL EMDGF V ++ ATNRPD+LD A+LRPGRFDR
Sbjct: 122 IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181
Query: 433 QVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
+ V PD GR++IL++H+R LA+DV+ E+I++ T G GA+L+ + EA + A R
Sbjct: 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
Query: 493 DLKEISKDEISDALERII 510
++ D+ A+E+I+
Sbjct: 242 LRDYVTMDDFRKAVEKIM 259
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 157/251 (62%), Gaps = 1/251 (0%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
VT++DV G +L+EVV+ L +P+++ LG PKG LL GPPGTGKTL ARAVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
F SE V+ +VG GA VR+LFE A++K CI+F DEIDAV
Sbjct: 266 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG 325
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
++E ++T+ +L+T++DGF + V+ ATNRP+ LD ALLRPGR DR+V PD+ GR
Sbjct: 326 DNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504
I ++HS+ ++ + + +E ISR P TGA+L+++ EA + A R K ++ +
Sbjct: 386 ANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445
Query: 505 ALERIIAGPEK 515
A++++I+G +K
Sbjct: 446 AVDKVISGYKK 456
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 148/245 (60%), Gaps = 1/245 (0%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
+TF + G + EL+EV++ LKNP+ + +G K PKG LL GPPGTGKTLLA+AVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
G F AS V+ ++G A +R++F AK PCI+F+DE+DA+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ E ++T+ +LLT+MDGF ++ ATNRPD LD ALLRPGR DR+V + P+ AGR
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504
++I ++H+ + DFE + + GF GAD++N EA A R D I+ D++
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417
Query: 505 ALERI 509
A+ ++
Sbjct: 418 AVRKV 422
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 141/231 (61%), Gaps = 3/231 (1%)
Query: 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 318
EVP+ VT+ D+ G + K ELQE+V + +++PDK+ G KG L GPPG GKTLL
Sbjct: 8 EVPQ--VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 319 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXX 378
A+A+A E F S E + ++ G + VR++F+KA+ APC++F DE+D++
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 379 XXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438
++ INQ+LTEMDG S V ++ ATNRPD++D A+LRPGR D+ + +
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
PD RV IL+ + R +AKDVD E +++ T GF+GADL + A LA
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 147/240 (61%), Gaps = 2/240 (0%)
Query: 254 SKSKFQEVPETGV-TFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPP 311
S+ K EV E T++DV G D+ EL E + +K DK+ +G + PKG L+ GPP
Sbjct: 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPP 224
Query: 312 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEID 371
GTGKTLLARA A + F AA + V++++G GA VRD F AK KAP I+FIDE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 372 AVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFD 431
A+ + E ++T+ +LL ++DGFS + V VLAATNR DVLD ALLR GR D
Sbjct: 285 AIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLD 344
Query: 432 RQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491
R++ P R +ILQ+HSR D+++++++R T F GA L+ + EA ++A R
Sbjct: 345 RKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 141/231 (61%), Gaps = 3/231 (1%)
Query: 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 318
EVP+ VT+ D+ G + K ELQE+V + +++PDK+ G KG L GPPG GKTLL
Sbjct: 470 EVPQ--VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 319 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXX 378
A+A+A E F S E + ++ G + VR++F+KA+ APC++F DE+D++
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 379 XXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438
++ INQ+LTEMDG S V ++ ATNRPD++D A+LRPGR D+ + +
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
PD RV IL+ + R +AKDVD E +++ T GF+GADL + A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + DV G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 141/231 (61%), Gaps = 3/231 (1%)
Query: 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 318
EVP+ VT+ D+ G + K ELQE+V + +++PDK+ G KG L GPPG GKTLL
Sbjct: 470 EVPQ--VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 319 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXX 378
A+A+A E F S E + ++ G + VR++F+KA+ APC++F DE+D++
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 379 XXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438
++ INQ+LTEMDG S V ++ ATNRPD++D A+LRPGR D+ + +
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489
PD RV IL+ + R +AKDVD E +++ T GF+GADL + A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + D+ G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + DV G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + D+ G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + D+ G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 5/242 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + D+ G + +++E+V+ L++P + A+G K P+G LL GPPGTGKTL+ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E G FF E + G S +R FE+A+ AP I+FIDE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ + ++QLLT MDG + VIV+AATNRP+ +D AL R GRFDR+V + PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 445 VKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS-KDEIS 503
++ILQ+H++ LA DVD E+++ T G GADL L +EAA+ A R+ + I +DE
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437
Query: 504 DA 505
DA
Sbjct: 438 DA 439
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 157/253 (62%), Gaps = 3/253 (1%)
Query: 259 QEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 317
++VP++ T+ V G + E++EV++ +K+P+ + +LG PKG +L GPPGTGKTL
Sbjct: 140 EKVPDS--TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 318 LARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXX 377
LARAVA F + +E V+ ++G G+ VR+LF A+ AP I+F+DEID++
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
Query: 378 XXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD 437
+ E ++T+ +LL ++DGF + + ++ ATNR D+LD ALLRPGR DR++
Sbjct: 258 VEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP 317
Query: 438 RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497
P VA R +IL++HSR L + ++ K++ + G +GAD++ + EA + A R +
Sbjct: 318 PPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHV 377
Query: 498 SKDEISDALERII 510
++++ A+ +++
Sbjct: 378 TQEDFELAVGKVM 390
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 145/240 (60%), Gaps = 19/240 (7%)
Query: 266 VTFADVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
VT+AD+ + + EL ++ ++NPD++ ALG P G LL GPPG GKTLLA+AVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
E+G+ F S E + ++VG VR +F++AK+ APC++F DE+DA+
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL--------CPR 118
Query: 385 NDERE-----QTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439
+RE + +NQLLTEMDG V ++AATNRPD++D A+LRPGR D+ + V P
Sbjct: 119 RSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 440 DVAGRVKILQVHSRG---KALAKDVDFEKIS--RRTPGFTGADLQNLMNEAAILAARRDL 494
A R+ IL+ ++ L DV+ E I+ R +TGADL L+ EA+I A R+++
Sbjct: 179 PPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 147/252 (58%), Gaps = 1/252 (0%)
Query: 267 TFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325
+++D+ G + E++E V+ L +P+ Y +G K PKG +L G PGTGKTLLA+AVA +
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXN 385
F SE ++ ++G G R +F+ A AP IVFIDEIDA+
Sbjct: 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE 299
Query: 386 DEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRV 445
E ++T+ +LL ++DGF V V+ ATN+ + LD AL+RPGR DR++ + PD++ +
Sbjct: 300 REIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKK 359
Query: 446 KILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505
KIL +H+ L++DV+ E + +GAD+Q + EA +LA R +++ ++ A
Sbjct: 360 KILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQA 419
Query: 506 LERIIAGPEKKN 517
ER++ ++N
Sbjct: 420 KERVMKNKVEEN 431
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 137/244 (56%), Gaps = 6/244 (2%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
VT+ADV G D K E++E V+ L D Y +G P+G LL GPPGTGKT+L +AVA
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
F SEFV ++G G VRD+F A+ AP I+FIDE+D++
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 385 NDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444
+ E ++ + +LLT+MDGF ++ V V+ ATNR D LD ALLRPGR DR++ P + R
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF--PSLRDR 346
Query: 445 VK---ILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501
+ I + +LA + D + + R +GA + +M EA + A R++ I + +
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 406
Query: 502 ISDA 505
+ +A
Sbjct: 407 LEEA 410
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 139 bits (350), Expect = 5e-33, Method: Composition-based stats.
Identities = 82/202 (40%), Positives = 124/202 (61%), Gaps = 5/202 (2%)
Query: 512 GPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEER 571
GP + +S ++K+ +A HEAGHAL+G + + D V KISIIPRG A G+T P E++
Sbjct: 3 GPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDK 62
Query: 572 LESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSK 631
+Y + L N++ V LGGR AEEV FG++ +TTGA ND + + +A +MV +G S
Sbjct: 63 ---HIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSD 119
Query: 632 KIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDIL 691
K+G +AI NPFLG M++ D S +D EV+ ++ Y +AK I+ + + L
Sbjct: 120 KVGPIAIRRV-ANPFLG-GMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPL 177
Query: 692 HKLAQLLIEKETVDGEEFMSLF 713
+ + L+EKET+ EEF+ +F
Sbjct: 178 KAVVKKLLEKETITCEEFVEVF 199
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 137/233 (58%), Gaps = 14/233 (6%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVA 323
V ++DVAG + AK L+E V +K P +T G + P +G LL GPPGTGK+ LA+AVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVA 188
Query: 324 GEAG-VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
EA FFS ++S+ V ++G V++LF+ A+ P I+FIDEID++
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CGSRSE 245
Query: 383 XXNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + + L +M G N G++VL ATN P VLDSA+ R RF++++ + P+
Sbjct: 246 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEA 303
Query: 442 AGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
R + ++H S +L + DF+++ R+T G++GAD+ ++ +A + R+
Sbjct: 304 HARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 258 FQEVPETG--VTFADVAGADQAKLELQEVVDFLK-NPDKYTALGAKIPKGCLLVGPPGTG 314
E+ E G V + D+AG D AK LQE+V P+ +T L A KG LL GPPG G
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAP-AKGLLLFGPPGNG 66
Query: 315 KTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVX 374
KTLLARAVA E F + +A+ +VG G VR LF A+ P I+FIDE+D++
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL- 125
Query: 375 XXXXXXXXXXNDEREQTINQLLTEMDGFSGNSG---VIVLAATNRPDVLDSALLRPGRFD 431
++ + + L E DG GN ++VLAATNRP LD A LR RF
Sbjct: 126 --LSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 432 RQVTVDRPDVAGRVKILQ--VHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAI 487
++V V PD R +L + +G L + ++++ T G++G+DL L +AA+
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAAL 238
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 138/245 (56%), Gaps = 14/245 (5%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG 324
V + D+AG + AK ++E+V + + PD +T L PKG LL GPPGTGKTL+ + +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIAS 139
Query: 325 EAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXX 384
++G FFS +AS +VG G VR LF A+ + P ++FIDEID++
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL---LSQRGDGE 196
Query: 385 NDEREQTINQLLTEMDGFSGNSG--VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVA 442
++ + + L ++DG + +S ++V+ ATNRP +D A R R +++ + P+ +
Sbjct: 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEAS 254
Query: 443 GRVKI-LQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR----DLKEI 497
R +I + + S+ + + + E+I +++ F+GAD+ L EA++ R D+ I
Sbjct: 255 ARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATI 314
Query: 498 SKDEI 502
+ D++
Sbjct: 315 TPDQV 319
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 12/232 (5%)
Query: 266 VTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVA 323
V ++DVAG + AK L+E V +K P +T G + P +G LL GPPGTGK+ LA+AVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 324 GEAG-VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
EA FFS ++S+ V ++G V++LF+ A+ P I+FIDEID++
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CGSRSE 123
Query: 383 XXNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + + L +M G N G++VL ATN P VLDSA+ R RF++++ + P+
Sbjct: 124 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEP 181
Query: 442 AGRVKILQVH-SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
R + ++H + + DF ++ R+T G++GAD+ ++ +A + R+
Sbjct: 182 HARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 13/237 (5%)
Query: 264 TGVTFADVAGADQAKLELQEVVDFLK-NPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 322
T V F D+AG D AK LQE+V P+ +T L A +G LL GPPG GKT+LA+AV
Sbjct: 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPA-RGLLLFGPPGNGKTMLAKAV 168
Query: 323 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
A E+ FF+ +A+ +VG G VR LF A+ P I+FID++D++
Sbjct: 169 AAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL---LCERRE 225
Query: 383 XXNDEREQTINQLLTEMDGF--SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPD 440
+D + + L E DG +G+ V+V+ ATNRP LD A+LR RF ++V V P+
Sbjct: 226 GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPN 283
Query: 441 VAGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495
R+ +L+ +G L + + +++R T G++G+DL L +AA L R+LK
Sbjct: 284 EETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAA-LGPIRELK 338
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTAL--GAKIP-KGCLLVGPPGTGKTLLARAV 322
V + DVAG + AK L+E V P K+ L G + P G LL GPPGTGK+ LA+AV
Sbjct: 48 VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 104
Query: 323 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
A EA FFS ++S+ V ++G V+ LF A+ P I+FID++DA+
Sbjct: 105 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL---TGTRGE 161
Query: 383 XXNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + +LL +M+G +S GV+VL ATN P LDSA+ R RF+R++ + PD+
Sbjct: 162 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 219
Query: 442 AGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
A R + +++ L K+ D+ + T G++G+D+ ++ +A + R+
Sbjct: 220 AARTTMFEINVGDTPSVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTAL--GAKIP-KGCLLVGPPGTGKTLLARAV 322
V + DVAG + AK L+E V P K+ L G + P G LL GPPGTGK+ LA+AV
Sbjct: 24 VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 80
Query: 323 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
A EA FFS ++S+ V ++G V+ LF A+ P I+FIDE+DA+
Sbjct: 81 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL---TGTRGE 137
Query: 383 XXNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + +LL +M+G +S GV+VL ATN P LDSA+ R RF+R++ + PD+
Sbjct: 138 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 195
Query: 442 AGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
A R + +++ L K+ D+ + T G++G+D+ ++ +A + R+
Sbjct: 196 AARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTAL--GAKIP-KGCLLVGPPGTGKTLLARAV 322
V + DVAG + AK L+E V P K+ L G + P G LL GPPGTGK+ LA+AV
Sbjct: 15 VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 71
Query: 323 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
A EA FFS ++S+ V ++G V+ LF A+ P I+FID++DA+
Sbjct: 72 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL---TGTRGE 128
Query: 383 XXNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + +LL +M+G +S GV+VL ATN P LDSA+ R RF+R++ + PD+
Sbjct: 129 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 186
Query: 442 AGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
A R + +++ L K+ D+ + T G++G+D+ ++ +A + R+
Sbjct: 187 AARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTAL--GAKIP-KGCLLVGPPGTGKTLLARAV 322
V + DVAG + AK L+E V P K+ L G + P G LL GPPGTGK+ LA+AV
Sbjct: 33 VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 89
Query: 323 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXX 382
A EA FFS ++S+ V ++G V+ LF A+ P I+FID++DA+
Sbjct: 90 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL---TGTRGE 146
Query: 383 XXNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441
++ + +LL +M+G +S GV+VL ATN P LDSA+ R RF+R++ + PD+
Sbjct: 147 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 204
Query: 442 AGRVKILQVH--SRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492
A R + +++ L K+ D+ + T G++G+D+ ++ +A + R+
Sbjct: 205 AARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKAKS 359
PK L++GP G GKT +AR +A A PF A++F E+ +VG S +RDL + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 360 KAPC-----IVFIDEIDAV 373
IVFIDEID +
Sbjct: 110 AIDAVEQNGIVFIDEIDKI 128
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 48/77 (62%)
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498
PD+ GR I ++HS+ ++ + + +E ISR P TGA+L+++ EA + A R K +
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 499 KDEISDALERIIAGPEK 515
+ + A++++I+G +K
Sbjct: 68 EKDFLKAVDKVISGYKK 84
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499
D+ GR I ++HS+ ++ + + +E ISR P TGA+L+++ EA A R K ++
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 500 DEISDALERIIAGPEK 515
+ A++++I+G +K
Sbjct: 62 KDFLKAVDKVISGYKK 77
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAGE 325
+ G D AK + V L+N + L ++ PK L++GP G GKT +AR +A
Sbjct: 17 IIGQDNAK---RSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL 73
Query: 326 AGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKA 357
A PF A++F E+ +VG S +RDL + A
Sbjct: 74 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAGE 325
+ G D AK + V L+N + L ++ PK L++GP G GKT +AR +A
Sbjct: 16 IIGQDNAK---RSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL 72
Query: 326 AGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKA 357
A PF A++F E+ +VG S +RDL + A
Sbjct: 73 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKI-----PKGCLLVGPPGTGKTLLARAVAGE 325
+ G D AK + V L+N + L ++ PK L++GP G GKT +AR +A
Sbjct: 23 IIGQDNAK---RSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL 79
Query: 326 AGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKA 357
A PF A++F E+ +VG S +RDL + A
Sbjct: 80 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKA 357
PK L++GP G GKT +AR +A A PF A++F E+ +VG S +RDL + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGA-SRVRDLFEKA 357
PK L +GP G GKT +AR +A A PF A++F E+ +VG S +RDL + A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%)
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498
P+ R+ IL++HSR L + ++ KI+ PG +GA+++ + EA + A R ++
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 499 KDEISDALERII 510
+++ A+ +++
Sbjct: 71 QEDFEMAVAKVM 82
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 439 PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498
P+ R+ IL++HSR L + ++ KI+ PG +GA+++ + EA A R ++
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 499 KDEISDALERI 509
+++ A+ ++
Sbjct: 63 QEDFEXAVAKV 73
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 271 VAGADQAKLELQEVV----DFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGE 325
V G +QAK L V L+N D T+ G ++ K LL+GP G+GKTLLA +A
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGD--TSNGVELGKSNILLIGPTGSGKTLLAETLARL 74
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPC--------IVFIDEIDAV 373
VPF A+ E G V ++ +K K IV+ID+ID +
Sbjct: 75 LDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 271 VAGADQAKLELQEVV----DFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGE 325
V G +QAK L V L+N D T+ G ++ K LL+GP G+GKTLLA +A
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGD--TSNGVELGKSNILLIGPTGSGKTLLAETLARL 74
Query: 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPC--------IVFIDEIDAV 373
VPF A+ E G V ++ +K K IV+ID+ID +
Sbjct: 75 LDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKA-----KS 359
LL+GP G+GKTL+A+ +A +P A+ E +VG + +A +
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK 135
Query: 360 KAPCIVFIDEIDAV 373
IVFIDEID +
Sbjct: 136 AQKGIVFIDEIDKI 149
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVELFVGVGASRVRDLFEKA-KSKAPC 363
LL GPP +GKT LA +A E+ PF C+ + + ++ +F+ A KS+ C
Sbjct: 68 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSC 127
Query: 364 IVFIDEID 371
+V +D+I+
Sbjct: 128 VV-VDDIE 134
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFS-CAASEFVELFVGVGASRVRDLFEKA-KSKAPC 363
LL GPP +GKT LA +A E+ PF C+ + + ++ +F+ A KS+ C
Sbjct: 67 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSC 126
Query: 364 IVFIDEID 371
+V +D+I+
Sbjct: 127 VV-VDDIE 133
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 337
+ LL GPPGTGKT LA A+A E G VPF SE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 337
+ LL GPPGTGKT LA A+A E G VPF SE
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPC-- 363
+L GPPGTGKT LA +A A +A V G +R+ E+A+
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAGR 106
Query: 364 --IVFIDEI 370
I+F+DE+
Sbjct: 107 RTILFVDEV 115
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA------ASEF---VELFVGVGASRV 350
K P CL GPPG GKT LA+++A G F + SE +VG R+
Sbjct: 107 KGPILCL-AGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165
Query: 351 RDLFEKAKSKAPCIVFIDEIDAV 373
+KA P + +DEID +
Sbjct: 166 IQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGEAGV 328
LL GPPG GKT LA +A E GV
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGEAGV 328
LL GPPG GKT LA +A E GV
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGEAGV 328
LL GPPG GKT LA +A E GV
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337
G+ + + +L GPPG GKT A VA E G AS+
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFV----GVGASRVRDLFEK 356
+ L+ G PGTGKT +A +A G PF + A SE L + + + R + +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 357 AKSKAPCIVFIDEIDAV 373
K+ A V + EID +
Sbjct: 131 IKAGAVHTVSLHEIDVI 147
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 298 GAKIPK----GCLLVGPPGTGKTLLARAVA----GEAGVPFFSCAASEFVELFVGVGASR 349
G K PK + +GP G GKT LARA+A G+ SE++E G
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE-SMIRIDMSEYMEKHSTSGGQ- 570
Query: 350 VRDLFEKAKSKAPCIVFIDEID 371
L EK + K +V +D I+
Sbjct: 571 ---LTEKVRRKPYSVVLLDAIE 589
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVEL 341
+ L+ G PGTGKT +A A G PF + A SE L
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG GKT LA +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG GKT LA +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG GKT LA +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG GKT LA +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG GKT LA +A E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG--VGASRVRDLFEKAKSKAPC 363
L GPPG GKT A A+A E F F+EL G + +R+ ++ P
Sbjct: 50 LFAGPPGVGKTTAALALAREL---FGENWRHNFLELNASDERGINVIREKVKEFARTKPI 106
Query: 364 ------IVFIDEIDAV 373
I+F+DE DA+
Sbjct: 107 GGASFKIIFLDEADAL 122
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG--VGASRVRDLFEKAKSKAPC 363
L GPPGTGKT A A+A + F F+E+ G VR ++ AP
Sbjct: 42 LFSGPPGTGKTATAIALARDL---FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98
Query: 364 ------IVFIDEIDAV 373
I+F+DE DA+
Sbjct: 99 GGAPFKIIFLDEADAL 114
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 310 PPGTGKTLLARAVAGEAGVPFFSCAAS-EFV 339
PPGT + L+ARAVA EAG FS A++ EF+
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 457 LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKK 516
L+++VD E R +GAD+ ++ E+ +LA R + + + A + +I E++
Sbjct: 19 LSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQE 78
Query: 517 N 517
+
Sbjct: 79 H 79
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 306 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG--VGASRVRDLFEKAKSKAPC 363
L GPPGTGKT A A+A + F F+E+ G VR ++ AP
Sbjct: 42 LFSGPPGTGKTATAIALARDL---FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98
Query: 364 ------IVFIDEIDAV 373
I+F+DE DA+
Sbjct: 99 GGAPFKIIFLDEADAL 114
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 305 CLLVGPPGTGKTLLARAVAGE 325
LL GPPG G+T LA +A E
Sbjct: 54 VLLAGPPGLGRTTLAHIIASE 74
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 7 NPLLTSNFFGS---QILISPPTPKTRRLSVSFPFPSRT 41
NP+L+SN QI++SP T +S+S PS+T
Sbjct: 101 NPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKT 138
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 7 NPLLTSNFFGS---QILISPPTPKTRRLSVSFPFPSRT 41
NP+L+SN QI++SP T +S+S PS+T
Sbjct: 101 NPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKT 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,335,046
Number of Sequences: 62578
Number of extensions: 713940
Number of successful extensions: 2664
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2542
Number of HSP's gapped (non-prelim): 85
length of query: 723
length of database: 14,973,337
effective HSP length: 106
effective length of query: 617
effective length of database: 8,340,069
effective search space: 5145822573
effective search space used: 5145822573
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)