Query 004921
Match_columns 723
No_of_seqs 553 out of 3900
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1E-106 2E-111 908.8 51.6 567 141-718 23-593 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 2E-104 5E-109 851.5 40.0 445 258-718 293-737 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 9.2E-97 2E-101 839.3 50.1 565 140-716 163-749 (774)
4 CHL00176 ftsH cell division pr 100.0 3E-95 6E-100 838.6 59.2 569 141-716 50-626 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.3E-89 2.8E-94 799.5 59.0 568 140-717 29-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 2.8E-83 6.1E-88 729.4 51.9 494 211-714 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-57 6.3E-62 472.4 27.0 255 260-514 142-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.1E-53 2.5E-58 513.4 27.7 317 292-639 1620-1996(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-50 2.6E-55 449.6 25.8 323 179-510 346-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.5E-48 9.8E-53 422.7 24.9 245 264-511 506-771 (802)
11 KOG0727 26S proteasome regulat 100.0 1.2E-44 2.7E-49 360.4 24.3 255 257-511 143-398 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-45 7.8E-50 400.0 20.8 229 261-492 182-414 (802)
13 KOG0729 26S proteasome regulat 100.0 4.4E-45 9.5E-50 365.9 19.5 265 253-517 161-426 (435)
14 KOG0728 26S proteasome regulat 100.0 4E-44 8.7E-49 356.3 22.6 248 265-512 143-391 (404)
15 KOG0652 26S proteasome regulat 100.0 2.2E-44 4.8E-49 359.9 20.5 249 263-511 165-414 (424)
16 KOG0726 26S proteasome regulat 100.0 2E-44 4.2E-49 365.1 17.3 251 263-513 179-430 (440)
17 KOG0736 Peroxisome assembly fa 100.0 5.1E-43 1.1E-47 391.4 23.1 248 261-510 664-933 (953)
18 COG1223 Predicted ATPase (AAA+ 100.0 5.5E-43 1.2E-47 350.3 19.6 239 263-508 115-354 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.4E-42 3.1E-47 363.9 20.7 243 263-510 206-470 (491)
20 PF01434 Peptidase_M41: Peptid 100.0 1.3E-42 2.8E-47 353.4 17.4 212 498-712 1-213 (213)
21 PTZ00454 26S protease regulato 100.0 4.2E-41 9.1E-46 370.8 27.8 251 262-512 138-389 (398)
22 PRK03992 proteasome-activating 100.0 1.3E-39 2.8E-44 360.0 27.8 255 261-515 123-378 (389)
23 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-39 2.3E-44 361.7 22.5 229 261-492 659-888 (952)
24 PTZ00361 26 proteosome regulat 100.0 2.8E-39 6.1E-44 358.6 23.8 251 262-512 176-427 (438)
25 COG0464 SpoVK ATPases of the A 100.0 2.7E-38 5.8E-43 360.8 24.1 246 261-509 234-483 (494)
26 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-38 2.8E-43 334.7 18.8 231 257-492 80-314 (386)
27 TIGR01243 CDC48 AAA family ATP 100.0 6.2E-38 1.4E-42 372.7 25.5 246 263-510 447-711 (733)
28 KOG0739 AAA+-type ATPase [Post 100.0 5.2E-39 1.1E-43 326.7 12.5 226 261-492 125-353 (439)
29 TIGR01242 26Sp45 26S proteasom 100.0 6.9E-37 1.5E-41 336.2 27.1 249 261-509 114-363 (364)
30 CHL00195 ycf46 Ycf46; Provisio 100.0 3E-37 6.6E-42 347.0 24.7 245 260-511 219-465 (489)
31 KOG0651 26S proteasome regulat 100.0 4E-38 8.8E-43 322.6 13.0 247 264-510 127-374 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 4.2E-34 9.1E-39 321.3 24.8 249 262-512 175-481 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-33 8.2E-38 310.5 23.3 237 264-511 180-418 (693)
34 PLN00020 ribulose bisphosphate 100.0 2.5E-32 5.5E-37 290.2 24.0 260 265-540 111-394 (413)
35 KOG0741 AAA+-type ATPase [Post 100.0 6.7E-33 1.5E-37 299.5 15.1 249 261-510 211-491 (744)
36 KOG0732 AAA+-type ATPase conta 100.0 6.2E-32 1.3E-36 316.0 18.5 248 263-513 259-529 (1080)
37 TIGR01243 CDC48 AAA family ATP 100.0 6.1E-31 1.3E-35 313.0 27.1 245 264-511 173-437 (733)
38 KOG0740 AAA+-type ATPase [Post 100.0 3E-30 6.5E-35 280.7 15.9 224 263-492 147-374 (428)
39 KOG0743 AAA+-type ATPase [Post 99.9 8.6E-22 1.9E-26 213.3 16.4 206 266-481 198-412 (457)
40 CHL00181 cbbX CbbX; Provisiona 99.9 5.2E-21 1.1E-25 203.4 20.4 211 269-492 23-257 (287)
41 KOG0742 AAA+-type ATPase [Post 99.9 6.6E-21 1.4E-25 201.7 19.1 233 265-508 351-611 (630)
42 TIGR02880 cbbX_cfxQ probable R 99.9 5.3E-21 1.2E-25 203.2 18.3 213 268-492 20-256 (284)
43 TIGR02881 spore_V_K stage V sp 99.9 1.3E-20 2.9E-25 198.0 20.5 212 267-492 4-241 (261)
44 PF00004 AAA: ATPase family as 99.8 5.8E-21 1.3E-25 177.9 12.1 130 305-438 1-132 (132)
45 KOG0744 AAA+-type ATPase [Post 99.8 5.7E-19 1.2E-23 182.9 14.4 237 268-508 141-413 (423)
46 PF05496 RuvB_N: Holliday junc 99.8 2.1E-18 4.5E-23 173.8 15.8 190 264-485 19-225 (233)
47 KOG0736 Peroxisome assembly fa 99.8 5.5E-18 1.2E-22 191.5 19.5 222 283-510 412-654 (953)
48 PRK00080 ruvB Holliday junctio 99.8 8.1E-18 1.8E-22 182.7 19.5 215 263-509 19-250 (328)
49 COG0464 SpoVK ATPases of the A 99.8 4.1E-17 9E-22 186.7 25.1 219 288-511 4-228 (494)
50 TIGR00635 ruvB Holliday juncti 99.8 9.8E-18 2.1E-22 179.9 18.6 210 267-508 2-228 (305)
51 KOG0735 AAA+-type ATPase [Post 99.8 7.9E-18 1.7E-22 188.5 18.2 232 269-511 408-650 (952)
52 COG2255 RuvB Holliday junction 99.7 9.2E-17 2E-21 164.7 17.6 216 264-511 21-253 (332)
53 TIGR00763 lon ATP-dependent pr 99.7 5.9E-17 1.3E-21 194.1 18.5 200 270-489 321-554 (775)
54 COG2256 MGS1 ATPase related to 99.7 1.1E-16 2.3E-21 171.3 15.1 204 265-511 20-240 (436)
55 TIGR02639 ClpA ATP-dependent C 99.7 1.8E-16 3.9E-21 188.9 17.7 223 266-512 179-432 (731)
56 TIGR02902 spore_lonB ATP-depen 99.7 5.4E-16 1.2E-20 178.2 18.8 213 262-508 58-331 (531)
57 PRK11034 clpA ATP-dependent Cl 99.7 5.9E-16 1.3E-20 183.1 18.3 223 267-513 184-437 (758)
58 PRK14956 DNA polymerase III su 99.7 2.4E-15 5.2E-20 167.9 19.3 210 262-506 11-243 (484)
59 PRK00149 dnaA chromosomal repl 99.7 2.4E-15 5.1E-20 170.2 19.4 222 264-510 117-350 (450)
60 PRK12323 DNA polymerase III su 99.7 1.4E-15 3E-20 173.6 17.0 207 262-503 9-243 (700)
61 TIGR00362 DnaA chromosomal rep 99.7 4.6E-15 1E-19 165.7 20.5 222 264-511 105-339 (405)
62 PRK04195 replication factor C 99.6 3.4E-15 7.3E-20 170.3 18.9 211 259-506 4-222 (482)
63 PRK14962 DNA polymerase III su 99.6 5.1E-15 1.1E-19 167.2 18.8 204 263-507 8-240 (472)
64 TIGR02928 orc1/cdc6 family rep 99.6 2.5E-14 5.4E-19 157.3 22.5 221 266-509 12-274 (365)
65 PRK14088 dnaA chromosomal repl 99.6 1E-14 2.2E-19 164.2 19.7 223 263-511 99-334 (440)
66 PRK07003 DNA polymerase III su 99.6 7.6E-15 1.6E-19 169.4 18.7 196 262-488 9-227 (830)
67 PRK13342 recombination factor 99.6 1.1E-14 2.3E-19 163.2 19.2 200 264-510 7-220 (413)
68 PRK14961 DNA polymerase III su 99.6 1.5E-14 3.3E-19 159.2 19.5 210 262-506 9-241 (363)
69 PRK14960 DNA polymerase III su 99.6 1.8E-14 3.9E-19 165.0 18.5 202 263-505 9-239 (702)
70 PRK06893 DNA replication initi 99.6 4.8E-14 1E-18 145.5 19.6 210 263-506 10-227 (229)
71 PRK14958 DNA polymerase III su 99.6 2.3E-14 4.9E-19 163.6 18.7 203 262-505 9-240 (509)
72 TIGR03345 VI_ClpV1 type VI sec 99.6 1.7E-14 3.7E-19 173.6 18.5 217 265-506 183-428 (852)
73 PRK12402 replication factor C 99.6 4.5E-14 9.7E-19 153.3 20.1 212 258-506 4-246 (337)
74 PRK06645 DNA polymerase III su 99.6 3.1E-14 6.8E-19 161.6 18.9 214 261-506 13-253 (507)
75 TIGR03420 DnaA_homol_Hda DnaA 99.6 4.5E-14 9.8E-19 144.6 17.9 204 265-506 11-225 (226)
76 PRK08691 DNA polymerase III su 99.6 3.9E-14 8.4E-19 163.5 18.8 210 262-506 9-241 (709)
77 PRK00411 cdc6 cell division co 99.6 1.6E-13 3.5E-18 152.5 22.8 221 267-509 28-282 (394)
78 PLN03025 replication factor C 99.6 5.3E-14 1.2E-18 152.3 18.3 202 261-505 5-219 (319)
79 PRK07994 DNA polymerase III su 99.6 4.7E-14 1E-18 163.4 18.9 207 263-504 10-239 (647)
80 PRK14086 dnaA chromosomal repl 99.6 7.9E-14 1.7E-18 159.6 20.4 192 303-511 315-517 (617)
81 PRK14949 DNA polymerase III su 99.6 5.8E-14 1.3E-18 165.0 19.6 193 263-486 10-225 (944)
82 PRK10865 protein disaggregatio 99.6 1.7E-14 3.6E-19 174.1 15.6 197 266-487 175-399 (857)
83 PRK14964 DNA polymerase III su 99.6 5E-14 1.1E-18 158.9 17.9 202 263-505 7-237 (491)
84 PRK14951 DNA polymerase III su 99.6 6.8E-14 1.5E-18 161.8 19.1 209 262-505 9-245 (618)
85 PRK14963 DNA polymerase III su 99.6 9.5E-14 2.1E-18 158.2 19.5 202 263-506 8-237 (504)
86 PRK12422 chromosomal replicati 99.6 1.5E-13 3.2E-18 154.6 20.1 193 303-511 142-345 (445)
87 PRK08903 DnaA regulatory inact 99.6 1.9E-13 4.1E-18 140.6 18.8 202 263-507 12-224 (227)
88 TIGR03346 chaperone_ClpB ATP-d 99.5 4.3E-14 9.4E-19 171.0 16.1 201 266-491 170-398 (852)
89 PHA02544 44 clamp loader, smal 99.5 1.5E-13 3.3E-18 148.2 18.5 207 258-504 10-226 (316)
90 PRK05563 DNA polymerase III su 99.5 1.5E-13 3.2E-18 158.8 19.6 208 263-505 10-240 (559)
91 PRK14969 DNA polymerase III su 99.5 1.3E-13 2.7E-18 158.4 18.7 209 263-506 10-241 (527)
92 PRK07940 DNA polymerase III su 99.5 8.4E-14 1.8E-18 154.1 16.7 187 267-478 3-211 (394)
93 PRK13341 recombination factor 99.5 2.1E-13 4.6E-18 160.8 21.0 209 263-509 22-247 (725)
94 PRK05342 clpX ATP-dependent pr 99.5 1.4E-13 3E-18 153.1 18.1 182 266-449 67-322 (412)
95 TIGR02397 dnaX_nterm DNA polym 99.5 1.9E-13 4E-18 149.7 17.9 205 261-506 6-239 (355)
96 PRK14959 DNA polymerase III su 99.5 1.8E-13 4E-18 157.3 18.4 204 262-506 9-241 (624)
97 PRK07764 DNA polymerase III su 99.5 2.2E-13 4.7E-18 162.6 18.6 209 262-504 8-241 (824)
98 PRK14957 DNA polymerase III su 99.5 2.8E-13 6.1E-18 154.8 18.3 208 263-505 10-240 (546)
99 PRK08084 DNA replication initi 99.5 7.1E-13 1.5E-17 137.4 19.8 206 263-506 16-233 (235)
100 CHL00095 clpC Clp protease ATP 99.5 1.8E-13 3.9E-18 165.2 17.4 200 266-491 176-403 (821)
101 PRK14087 dnaA chromosomal repl 99.5 5.1E-13 1.1E-17 150.7 19.8 220 265-509 111-348 (450)
102 COG0466 Lon ATP-dependent Lon 99.5 1.1E-13 2.3E-18 157.2 13.8 164 269-452 323-508 (782)
103 KOG2004 Mitochondrial ATP-depe 99.5 1.4E-13 3E-18 155.3 14.3 163 268-452 410-596 (906)
104 PRK08727 hypothetical protein; 99.5 8.1E-13 1.8E-17 136.8 19.1 180 303-508 42-230 (233)
105 PRK10787 DNA-binding ATP-depen 99.5 1.9E-13 4.1E-18 163.0 16.2 216 270-506 323-579 (784)
106 KOG0989 Replication factor C, 99.5 3.2E-13 7E-18 140.2 15.6 195 257-486 24-235 (346)
107 PRK14952 DNA polymerase III su 99.5 3.7E-13 8E-18 155.2 17.8 209 263-505 7-240 (584)
108 PRK14965 DNA polymerase III su 99.5 5.2E-13 1.1E-17 154.9 18.1 208 263-505 10-240 (576)
109 PRK07133 DNA polymerase III su 99.5 6.1E-13 1.3E-17 155.1 18.5 211 261-506 10-240 (725)
110 PRK14970 DNA polymerase III su 99.5 6.8E-13 1.5E-17 146.4 17.9 210 262-506 10-230 (367)
111 TIGR00390 hslU ATP-dependent p 99.5 5.4E-13 1.2E-17 146.1 15.8 175 271-449 14-343 (441)
112 PRK14953 DNA polymerase III su 99.5 1.1E-12 2.3E-17 149.1 18.6 210 262-506 9-241 (486)
113 KOG2028 ATPase related to the 99.5 5.2E-13 1.1E-17 140.7 14.7 206 265-509 134-368 (554)
114 PTZ00112 origin recognition co 99.5 1.7E-12 3.6E-17 150.6 20.1 216 269-511 755-1008(1164)
115 PRK05642 DNA replication initi 99.5 2E-12 4.3E-17 134.0 18.5 179 302-506 45-232 (234)
116 PRK08451 DNA polymerase III su 99.5 1.6E-12 3.4E-17 148.1 19.3 208 262-504 7-237 (535)
117 PRK09111 DNA polymerase III su 99.5 1.3E-12 2.8E-17 151.4 18.7 210 262-506 17-254 (598)
118 PRK05201 hslU ATP-dependent pr 99.5 5.6E-13 1.2E-17 146.0 14.5 175 271-449 17-345 (443)
119 PRK05896 DNA polymerase III su 99.5 8.3E-13 1.8E-17 151.3 16.5 210 261-505 8-240 (605)
120 PRK14955 DNA polymerase III su 99.5 1.3E-12 2.9E-17 145.5 17.3 214 262-506 9-254 (397)
121 TIGR02640 gas_vesic_GvpN gas v 99.4 2.9E-12 6.2E-17 135.0 18.3 184 303-511 22-259 (262)
122 TIGR00382 clpX endopeptidase C 99.4 1.4E-12 2.9E-17 144.6 16.5 222 267-490 74-385 (413)
123 PF00308 Bac_DnaA: Bacterial d 99.4 1.3E-12 2.9E-17 133.9 15.2 170 303-489 35-216 (219)
124 PRK06647 DNA polymerase III su 99.4 2.4E-12 5.1E-17 148.6 18.6 209 263-506 10-241 (563)
125 PRK06620 hypothetical protein; 99.4 2E-12 4.4E-17 132.1 16.1 194 263-506 10-213 (214)
126 PRK06305 DNA polymerase III su 99.4 2.8E-12 6.2E-17 144.7 18.8 210 262-506 10-243 (451)
127 PRK00440 rfc replication facto 99.4 4.4E-12 9.6E-17 136.5 19.3 206 258-506 6-223 (319)
128 COG0593 DnaA ATPase involved i 99.4 6.9E-12 1.5E-16 137.7 19.9 227 263-514 81-318 (408)
129 PF05673 DUF815: Protein of un 99.4 6.7E-12 1.4E-16 128.5 17.7 190 264-484 22-244 (249)
130 PRK14948 DNA polymerase III su 99.4 5.5E-12 1.2E-16 147.0 19.1 206 262-503 9-239 (620)
131 COG2812 DnaX DNA polymerase II 99.4 3.1E-12 6.7E-17 144.1 16.4 195 263-488 10-227 (515)
132 PRK11034 clpA ATP-dependent Cl 99.4 3.8E-12 8.2E-17 151.0 17.0 163 271-453 460-667 (758)
133 PRK13407 bchI magnesium chelat 99.4 2.2E-12 4.8E-17 139.6 13.4 219 264-511 3-308 (334)
134 PRK14954 DNA polymerase III su 99.4 8.6E-12 1.9E-16 144.8 18.9 213 263-506 10-254 (620)
135 PRK14950 DNA polymerase III su 99.4 1.1E-11 2.4E-16 144.4 19.6 209 262-505 9-241 (585)
136 TIGR02639 ClpA ATP-dependent C 99.4 7.9E-12 1.7E-16 149.4 17.4 161 270-453 455-663 (731)
137 CHL00081 chlI Mg-protoporyphyr 99.4 6E-12 1.3E-16 136.7 14.4 222 263-512 11-325 (350)
138 TIGR02903 spore_lon_C ATP-depe 99.4 2.8E-11 6.1E-16 141.5 20.5 213 265-508 150-429 (615)
139 COG1224 TIP49 DNA helicase TIP 99.4 2.4E-11 5.3E-16 128.3 17.7 98 409-509 322-432 (450)
140 TIGR01650 PD_CobS cobaltochela 99.3 7.6E-12 1.6E-16 134.0 13.7 208 302-541 64-318 (327)
141 PRK09087 hypothetical protein; 99.3 1.7E-11 3.7E-16 126.3 14.4 171 304-509 46-222 (226)
142 PRK14971 DNA polymerase III su 99.3 3.8E-11 8.3E-16 140.0 19.0 208 263-505 11-242 (614)
143 COG1474 CDC6 Cdc6-related prot 99.3 8.5E-11 1.8E-15 129.1 20.5 213 270-508 18-264 (366)
144 TIGR02030 BchI-ChlI magnesium 99.3 2.6E-11 5.7E-16 131.6 15.8 215 267-512 2-312 (337)
145 cd00009 AAA The AAA+ (ATPases 99.3 3.4E-11 7.4E-16 112.4 13.6 120 302-437 19-150 (151)
146 TIGR03345 VI_ClpV1 type VI sec 99.2 1E-10 2.3E-15 141.2 17.5 194 269-485 566-826 (852)
147 TIGR02442 Cob-chelat-sub cobal 99.2 7E-11 1.5E-15 138.9 15.2 213 267-511 2-306 (633)
148 PHA02244 ATPase-like protein 99.2 2.1E-10 4.6E-15 124.2 16.9 122 303-441 120-263 (383)
149 KOG1969 DNA replication checkp 99.2 2.1E-10 4.5E-15 130.4 16.8 215 255-494 257-520 (877)
150 PRK09112 DNA polymerase III su 99.2 2.3E-10 4.9E-15 125.2 16.5 190 264-485 18-244 (351)
151 COG2607 Predicted ATPase (AAA+ 99.2 9.9E-10 2.2E-14 111.0 19.0 200 256-485 46-277 (287)
152 COG0542 clpA ATP-binding subun 99.2 4.6E-10 1E-14 131.2 18.3 165 265-453 166-347 (786)
153 TIGR03346 chaperone_ClpB ATP-d 99.2 3.2E-10 7E-15 137.6 17.6 195 269-486 565-822 (852)
154 PRK10865 protein disaggregatio 99.2 4.9E-10 1.1E-14 135.7 18.2 162 268-453 567-780 (857)
155 COG0542 clpA ATP-binding subun 99.2 9.7E-11 2.1E-15 136.8 11.3 159 269-452 491-705 (786)
156 PRK07471 DNA polymerase III su 99.2 4.1E-10 9E-15 123.8 15.4 186 264-483 14-240 (365)
157 PRK13531 regulatory ATPase Rav 99.1 9.5E-10 2.1E-14 123.1 17.2 194 303-513 40-287 (498)
158 COG0714 MoxR-like ATPases [Gen 99.1 6.1E-10 1.3E-14 121.2 15.4 132 303-450 44-201 (329)
159 CHL00095 clpC Clp protease ATP 99.1 9E-10 2E-14 133.4 18.3 165 269-453 509-733 (821)
160 TIGR03015 pepcterm_ATPase puta 99.1 1.3E-09 2.8E-14 114.6 16.6 189 304-509 45-266 (269)
161 PRK15424 propionate catabolism 99.1 2.7E-10 5.9E-15 130.6 12.0 208 266-503 216-479 (538)
162 TIGR00368 Mg chelatase-related 99.1 6.3E-10 1.4E-14 126.8 14.8 208 266-507 189-497 (499)
163 PRK05564 DNA polymerase III su 99.1 1.2E-09 2.6E-14 118.1 15.9 180 267-480 2-189 (313)
164 TIGR00764 lon_rel lon-related 99.1 2.1E-09 4.4E-14 125.6 17.9 102 407-510 268-392 (608)
165 TIGR00678 holB DNA polymerase 99.1 9.5E-10 2.1E-14 109.9 13.0 149 300-472 12-183 (188)
166 smart00382 AAA ATPases associa 99.1 5.1E-10 1.1E-14 103.2 10.0 126 302-439 2-147 (148)
167 COG1219 ClpX ATP-dependent pro 99.1 2.1E-10 4.7E-15 119.6 8.1 136 267-402 58-203 (408)
168 KOG1942 DNA helicase, TBP-inte 99.1 4.6E-09 9.9E-14 108.5 17.6 100 408-510 326-439 (456)
169 smart00350 MCM minichromosome 99.1 1.5E-09 3.2E-14 124.8 15.8 219 270-509 204-504 (509)
170 PF05621 TniB: Bacterial TniB 99.1 6.6E-09 1.4E-13 109.8 19.0 217 270-505 35-285 (302)
171 TIGR02329 propionate_PrpR prop 99.1 7E-10 1.5E-14 127.2 12.7 208 266-504 209-465 (526)
172 TIGR00602 rad24 checkpoint pro 99.1 2.7E-09 5.8E-14 124.2 17.4 259 257-541 72-390 (637)
173 PF01078 Mg_chelatase: Magnesi 99.1 1.8E-10 4E-15 115.6 6.6 119 267-416 1-158 (206)
174 COG3829 RocR Transcriptional r 99.1 5.6E-10 1.2E-14 124.5 10.8 212 264-508 240-497 (560)
175 PRK07399 DNA polymerase III su 99.1 2.8E-09 6E-14 115.1 15.8 183 267-483 2-223 (314)
176 COG0470 HolB ATPase involved i 99.0 3.7E-09 7.9E-14 114.0 15.8 146 270-446 2-175 (325)
177 KOG0991 Replication factor C, 99.0 1.8E-09 3.9E-14 108.4 11.9 208 259-506 17-234 (333)
178 PF06068 TIP49: TIP49 C-termin 99.0 2E-09 4.3E-14 115.8 12.5 66 267-339 22-89 (398)
179 TIGR01817 nifA Nif-specific re 99.0 1.8E-09 3.9E-14 125.1 12.7 206 265-504 192-440 (534)
180 COG2204 AtoC Response regulato 99.0 1.9E-09 4E-14 120.3 12.0 205 266-503 138-385 (464)
181 TIGR02031 BchD-ChlD magnesium 99.0 4.8E-09 1E-13 122.3 16.0 190 303-511 17-260 (589)
182 TIGR02974 phageshock_pspF psp 99.0 2.8E-09 6.1E-14 115.9 13.1 188 271-489 1-233 (329)
183 COG3604 FhlA Transcriptional r 99.0 3.3E-09 7.1E-14 117.0 13.3 198 265-489 219-456 (550)
184 PRK11331 5-methylcytosine-spec 99.0 3.4E-09 7.5E-14 117.8 13.6 141 268-438 174-357 (459)
185 PF07728 AAA_5: AAA domain (dy 99.0 1.3E-10 2.8E-15 110.1 1.8 113 304-430 1-139 (139)
186 PRK11608 pspF phage shock prot 99.0 2.8E-09 6.1E-14 115.9 12.3 191 268-488 5-239 (326)
187 COG1221 PspF Transcriptional r 99.0 1.7E-09 3.8E-14 118.6 10.4 196 265-490 74-310 (403)
188 PRK04132 replication factor C 99.0 6.8E-09 1.5E-13 123.8 16.2 170 305-505 567-750 (846)
189 PRK05022 anaerobic nitric oxid 99.0 4.2E-09 9E-14 121.3 14.1 193 267-490 185-421 (509)
190 COG1220 HslU ATP-dependent pro 99.0 9.2E-09 2E-13 108.3 15.2 137 363-510 252-404 (444)
191 PRK05707 DNA polymerase III su 99.0 6.2E-09 1.4E-13 113.0 13.9 161 299-482 19-204 (328)
192 KOG0741 AAA+-type ATPase [Post 99.0 7.6E-09 1.7E-13 114.1 14.5 154 284-449 526-683 (744)
193 PF07724 AAA_2: AAA domain (Cd 99.0 1.4E-09 2.9E-14 107.4 7.6 109 303-418 4-131 (171)
194 PRK11388 DNA-binding transcrip 99.0 2.9E-09 6.2E-14 126.0 11.8 208 265-506 321-568 (638)
195 PRK09862 putative ATP-dependen 99.0 1.2E-08 2.6E-13 116.1 16.1 210 266-508 188-491 (506)
196 PRK15429 formate hydrogenlyase 98.9 9.2E-09 2E-13 122.6 15.4 194 265-488 372-608 (686)
197 PRK10820 DNA-binding transcrip 98.9 7.4E-09 1.6E-13 119.4 13.9 204 265-502 200-447 (520)
198 COG0606 Predicted ATPase with 98.9 3.8E-09 8.2E-14 116.5 9.6 210 265-507 175-483 (490)
199 PRK08058 DNA polymerase III su 98.9 1.1E-08 2.3E-13 111.5 11.5 154 267-450 3-180 (329)
200 PRK08116 hypothetical protein; 98.8 1.4E-08 3E-13 107.5 11.1 123 302-441 114-251 (268)
201 smart00763 AAA_PrkA PrkA AAA d 98.8 2.1E-08 4.5E-13 108.9 11.8 82 268-356 49-143 (361)
202 KOG0745 Putative ATP-dependent 98.8 1.2E-08 2.6E-13 110.5 9.3 99 304-402 228-332 (564)
203 COG1239 ChlI Mg-chelatase subu 98.8 4.7E-08 1E-12 106.7 13.4 157 265-452 13-232 (423)
204 PF00158 Sigma54_activat: Sigm 98.8 3.8E-08 8.3E-13 96.9 10.5 132 271-432 1-156 (168)
205 KOG0990 Replication factor C, 98.8 1E-07 2.2E-12 100.2 13.6 195 258-489 30-237 (360)
206 PRK06964 DNA polymerase III su 98.7 3.6E-08 7.9E-13 107.3 10.0 134 299-451 18-203 (342)
207 TIGR02915 PEP_resp_reg putativ 98.7 5.6E-08 1.2E-12 110.0 11.5 202 267-502 137-382 (445)
208 PF13177 DNA_pol3_delta2: DNA 98.7 4.4E-08 9.5E-13 95.9 8.5 136 273-438 1-160 (162)
209 PRK07952 DNA replication prote 98.7 2.4E-07 5.1E-12 96.6 13.8 131 265-417 68-205 (244)
210 PRK12377 putative replication 98.7 2.7E-07 5.8E-12 96.4 13.9 101 302-417 101-206 (248)
211 KOG1514 Origin recognition com 98.7 3.2E-07 7E-12 104.8 15.4 193 304-511 424-657 (767)
212 PRK06871 DNA polymerase III su 98.7 2.5E-07 5.4E-12 100.1 13.9 133 300-451 22-178 (325)
213 PF07726 AAA_3: ATPase family 98.7 1.3E-08 2.9E-13 94.6 3.5 111 304-430 1-129 (131)
214 PTZ00111 DNA replication licen 98.7 2.9E-07 6.2E-12 109.7 15.3 153 270-443 451-648 (915)
215 KOG2680 DNA helicase TIP49, TB 98.6 8.2E-07 1.8E-11 92.4 15.9 91 417-510 339-430 (454)
216 PRK07993 DNA polymerase III su 98.6 3E-07 6.4E-12 100.2 13.4 159 299-481 21-204 (334)
217 PRK13765 ATP-dependent proteas 98.6 2.1E-07 4.6E-12 108.8 12.2 100 407-508 277-399 (637)
218 PRK08769 DNA polymerase III su 98.6 6.2E-07 1.3E-11 96.9 14.8 158 300-482 24-209 (319)
219 PRK08181 transposase; Validate 98.6 2.4E-07 5.1E-12 97.9 11.3 100 302-417 106-209 (269)
220 PRK10923 glnG nitrogen regulat 98.6 3.1E-07 6.7E-12 104.7 12.8 207 267-506 136-385 (469)
221 PRK11361 acetoacetate metaboli 98.6 5.3E-07 1.2E-11 102.3 14.4 205 267-505 141-389 (457)
222 PRK08939 primosomal protein Dn 98.6 5.1E-07 1.1E-11 97.2 12.9 132 265-417 123-261 (306)
223 PRK06526 transposase; Provisio 98.5 3.3E-07 7.1E-12 96.2 10.3 100 302-417 98-201 (254)
224 KOG2227 Pre-initiation complex 98.5 2.1E-06 4.5E-11 94.5 16.2 204 269-493 150-383 (529)
225 PRK13406 bchD magnesium chelat 98.5 4.5E-07 9.6E-12 105.3 11.6 189 303-511 26-252 (584)
226 PF01637 Arch_ATPase: Archaeal 98.5 8.8E-07 1.9E-11 90.0 12.2 165 302-479 20-232 (234)
227 PF03969 AFG1_ATPase: AFG1-lik 98.5 2.2E-07 4.8E-12 102.1 8.1 141 299-466 59-207 (362)
228 TIGR01818 ntrC nitrogen regula 98.5 8E-07 1.7E-11 101.1 12.8 205 268-506 133-381 (463)
229 PF03215 Rad17: Rad17 cell cyc 98.5 1.7E-06 3.8E-11 99.2 15.3 211 256-490 6-269 (519)
230 PRK15115 response regulator Gl 98.4 8.6E-07 1.9E-11 100.3 11.1 180 303-505 158-380 (444)
231 PRK08699 DNA polymerase III su 98.4 9.4E-07 2E-11 96.0 10.4 132 300-450 19-183 (325)
232 PRK09183 transposase/IS protei 98.4 1.5E-06 3.2E-11 91.6 11.5 71 302-373 102-176 (259)
233 PRK06835 DNA replication prote 98.4 2.1E-06 4.5E-11 93.3 12.9 69 303-373 184-258 (329)
234 PRK06090 DNA polymerase III su 98.4 1.2E-06 2.5E-11 94.8 10.8 133 299-450 22-178 (319)
235 PF01695 IstB_IS21: IstB-like 98.4 3.4E-07 7.4E-12 91.0 6.1 71 301-373 46-120 (178)
236 COG1484 DnaC DNA replication p 98.4 2.4E-06 5.3E-11 89.7 12.9 70 302-373 105-179 (254)
237 KOG2035 Replication factor C, 98.4 6.8E-06 1.5E-10 85.1 15.4 179 263-472 7-220 (351)
238 PF14532 Sigma54_activ_2: Sigm 98.4 6.7E-07 1.4E-11 84.9 7.5 105 273-416 2-109 (138)
239 KOG1051 Chaperone HSP104 and r 98.4 1.8E-06 3.9E-11 102.8 12.4 129 270-418 563-712 (898)
240 PRK06921 hypothetical protein; 98.4 3.3E-06 7.2E-11 89.3 13.2 68 302-372 117-188 (266)
241 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.4E-11 81.3 9.5 69 303-373 3-73 (128)
242 PRK10365 transcriptional regul 98.4 1.6E-06 3.5E-11 97.8 10.7 181 302-505 162-385 (441)
243 KOG1970 Checkpoint RAD17-RFC c 98.3 2.6E-05 5.7E-10 87.4 16.8 213 257-490 70-321 (634)
244 KOG2383 Predicted ATPase [Gene 98.2 7.9E-06 1.7E-10 88.5 11.5 161 299-486 111-297 (467)
245 cd01120 RecA-like_NTPases RecA 98.2 7.1E-06 1.5E-10 78.4 10.1 111 305-419 2-139 (165)
246 PF13401 AAA_22: AAA domain; P 98.2 3.4E-06 7.3E-11 78.5 7.5 98 302-414 4-125 (131)
247 COG1485 Predicted ATPase [Gene 98.2 3.2E-06 7E-11 90.6 8.1 163 274-464 30-208 (367)
248 PF05729 NACHT: NACHT domain 98.1 2.9E-05 6.4E-10 74.6 11.2 140 304-454 2-165 (166)
249 COG3267 ExeA Type II secretory 98.1 0.00011 2.4E-09 75.8 15.7 183 305-503 54-267 (269)
250 TIGR02237 recomb_radB DNA repa 98.0 2.1E-05 4.4E-10 79.8 9.7 115 298-415 8-148 (209)
251 COG3283 TyrR Transcriptional r 98.0 4.2E-05 9.1E-10 81.7 11.9 208 265-502 200-442 (511)
252 PF12774 AAA_6: Hydrolytic ATP 98.0 3.8E-05 8.3E-10 79.5 11.0 126 302-448 32-176 (231)
253 COG3284 AcoR Transcriptional a 98.0 1E-05 2.2E-10 92.4 7.1 181 304-508 338-556 (606)
254 PF00493 MCM: MCM2/3/5 family 97.9 3.3E-06 7.1E-11 92.1 1.9 217 270-508 25-325 (331)
255 COG1241 MCM2 Predicted ATPase 97.9 3.2E-05 6.9E-10 90.5 9.9 153 268-442 285-473 (682)
256 PRK05917 DNA polymerase III su 97.9 4.1E-05 9E-10 81.5 9.4 122 299-439 16-154 (290)
257 PF12775 AAA_7: P-loop contain 97.9 2.1E-05 4.5E-10 83.5 6.7 133 303-453 34-194 (272)
258 PLN03210 Resistant to P. syrin 97.9 0.00019 4.1E-09 90.7 15.8 173 266-473 181-388 (1153)
259 PF00931 NB-ARC: NB-ARC domain 97.9 0.00028 6E-09 74.8 14.8 174 279-482 3-203 (287)
260 PRK07276 DNA polymerase III su 97.8 0.00046 1E-08 73.7 16.1 154 300-482 22-198 (290)
261 KOG0480 DNA replication licens 97.8 8.3E-05 1.8E-09 84.5 10.8 221 267-508 343-642 (764)
262 cd01124 KaiC KaiC is a circadi 97.8 0.00015 3.3E-09 71.7 11.2 103 305-418 2-141 (187)
263 PRK11823 DNA repair protein Ra 97.8 0.00012 2.6E-09 83.1 11.4 79 298-376 76-171 (446)
264 PF00910 RNA_helicase: RNA hel 97.8 5.9E-05 1.3E-09 68.6 7.1 23 305-327 1-23 (107)
265 PRK05818 DNA polymerase III su 97.8 0.00023 5E-09 74.5 12.3 121 300-439 5-147 (261)
266 PHA00729 NTP-binding motif con 97.7 6E-05 1.3E-09 77.4 6.7 24 304-327 19-42 (226)
267 cd01121 Sms Sms (bacterial rad 97.7 0.00017 3.7E-09 79.8 10.7 79 298-376 78-173 (372)
268 PRK09361 radB DNA repair and r 97.7 0.00022 4.8E-09 73.2 10.2 116 298-415 19-160 (225)
269 COG1116 TauB ABC-type nitrate/ 97.7 3.3E-05 7.2E-10 79.6 4.1 26 299-324 24-51 (248)
270 TIGR01618 phage_P_loop phage n 97.7 0.00012 2.5E-09 75.2 7.7 24 301-324 11-34 (220)
271 KOG0478 DNA replication licens 97.6 0.00044 9.5E-09 79.5 12.6 120 302-442 462-616 (804)
272 KOG2170 ATPase of the AAA+ sup 97.6 0.0024 5.1E-08 67.5 16.3 95 271-374 84-191 (344)
273 TIGR02012 tigrfam_recA protein 97.6 0.0004 8.8E-09 75.2 10.9 118 298-415 51-190 (321)
274 PRK07132 DNA polymerase III su 97.6 0.00068 1.5E-08 72.9 12.5 127 300-450 16-160 (299)
275 KOG1968 Replication factor C, 97.6 0.00027 5.9E-09 85.2 10.5 211 257-488 308-535 (871)
276 TIGR02688 conserved hypothetic 97.5 0.0025 5.5E-08 70.9 16.1 61 302-374 209-273 (449)
277 PRK08533 flagellar accessory p 97.5 0.00067 1.4E-08 70.3 11.0 76 299-374 21-130 (230)
278 PRK06067 flagellar accessory p 97.5 0.00064 1.4E-08 70.3 10.4 39 298-336 21-62 (234)
279 cd03283 ABC_MutS-like MutS-lik 97.5 0.0005 1.1E-08 69.6 9.2 104 303-420 26-151 (199)
280 KOG2228 Origin recognition com 97.5 0.00059 1.3E-08 72.8 9.8 159 271-452 26-219 (408)
281 PRK00131 aroK shikimate kinase 97.4 0.00038 8.3E-09 67.8 8.0 34 301-334 3-36 (175)
282 PF13207 AAA_17: AAA domain; P 97.4 0.0001 2.2E-09 67.7 3.5 31 305-335 2-32 (121)
283 COG1373 Predicted ATPase (AAA+ 97.4 0.0037 8.1E-08 70.0 16.7 123 304-446 39-161 (398)
284 PRK08118 topology modulation p 97.4 0.0002 4.4E-09 70.5 5.8 33 304-336 3-35 (167)
285 KOG0482 DNA replication licens 97.4 0.001 2.3E-08 74.0 11.6 227 270-511 343-640 (721)
286 cd01394 radB RadB. The archaea 97.4 0.0007 1.5E-08 69.1 9.8 39 298-336 15-56 (218)
287 COG1618 Predicted nucleotide k 97.4 0.00059 1.3E-08 65.9 8.5 27 300-326 3-29 (179)
288 TIGR02858 spore_III_AA stage I 97.4 0.00026 5.7E-09 75.0 6.8 95 303-418 112-230 (270)
289 cd00983 recA RecA is a bacter 97.4 0.00068 1.5E-08 73.5 9.5 117 299-415 52-190 (325)
290 KOG2543 Origin recognition com 97.4 0.002 4.4E-08 69.9 12.8 137 300-450 28-191 (438)
291 PF14516 AAA_35: AAA-like doma 97.4 0.0083 1.8E-07 65.6 18.0 171 303-485 32-243 (331)
292 TIGR00416 sms DNA repair prote 97.3 0.0013 2.8E-08 74.8 11.6 78 298-375 90-184 (454)
293 PF07693 KAP_NTPase: KAP famil 97.3 0.0044 9.6E-08 67.0 14.9 78 360-452 171-263 (325)
294 PRK14722 flhF flagellar biosyn 97.3 0.00058 1.2E-08 75.4 7.8 109 302-425 137-267 (374)
295 PRK07261 topology modulation p 97.3 0.00039 8.4E-09 68.7 5.5 34 305-338 3-36 (171)
296 PRK10536 hypothetical protein; 97.3 0.0009 2E-08 70.0 8.3 22 304-325 76-97 (262)
297 cd00046 DEXDc DEAD-like helica 97.2 0.0023 5E-08 58.5 10.3 24 303-326 1-24 (144)
298 PF05707 Zot: Zonular occluden 97.2 0.00021 4.6E-09 71.9 3.3 123 305-439 3-146 (193)
299 cd01393 recA_like RecA is a b 97.2 0.0011 2.3E-08 68.0 8.6 117 298-415 15-167 (226)
300 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0016 3.6E-08 67.0 9.7 117 298-415 15-168 (235)
301 PF13671 AAA_33: AAA domain; P 97.2 0.00097 2.1E-08 62.9 7.4 35 305-341 2-36 (143)
302 cd01131 PilT Pilus retraction 97.2 0.0012 2.5E-08 66.8 8.3 66 305-370 4-83 (198)
303 COG4619 ABC-type uncharacteriz 97.2 0.0036 7.7E-08 61.1 10.9 23 303-325 30-52 (223)
304 PF06309 Torsin: Torsin; Inte 97.2 0.0014 3E-08 61.2 7.7 51 270-326 26-77 (127)
305 cd01128 rho_factor Transcripti 97.1 0.0044 9.6E-08 65.0 12.3 25 304-328 18-42 (249)
306 PRK09376 rho transcription ter 97.1 0.0015 3.2E-08 72.1 9.0 72 305-376 172-271 (416)
307 PF06745 KaiC: KaiC; InterPro 97.1 0.0022 4.9E-08 65.8 10.0 108 298-415 15-159 (226)
308 PRK15455 PrkA family serine pr 97.1 0.0005 1.1E-08 78.8 5.4 62 267-334 74-136 (644)
309 KOG0481 DNA replication licens 97.1 0.0012 2.6E-08 73.6 8.0 172 271-453 333-533 (729)
310 KOG1051 Chaperone HSP104 and r 97.1 0.0019 4.1E-08 77.7 10.2 160 268-451 185-362 (898)
311 COG0703 AroK Shikimate kinase 97.1 0.0012 2.5E-08 65.0 7.1 32 303-334 3-34 (172)
312 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0039 8.5E-08 64.8 11.4 39 298-336 17-58 (237)
313 PRK06762 hypothetical protein; 97.1 0.0017 3.7E-08 63.2 8.2 40 302-341 2-41 (166)
314 PRK09354 recA recombinase A; P 97.1 0.0032 6.8E-08 68.9 10.5 115 299-413 57-193 (349)
315 COG5271 MDN1 AAA ATPase contai 97.0 0.0019 4.1E-08 79.9 9.1 133 302-452 1543-1703(4600)
316 cd01122 GP4d_helicase GP4d_hel 97.0 0.0033 7.1E-08 66.4 10.2 38 298-335 26-67 (271)
317 PF13604 AAA_30: AAA domain; P 97.0 0.0013 2.8E-08 66.5 6.3 98 303-416 19-132 (196)
318 PRK13947 shikimate kinase; Pro 97.0 0.00067 1.5E-08 66.3 4.2 31 304-334 3-33 (171)
319 PRK12339 2-phosphoglycerate ki 97.0 0.0068 1.5E-07 61.3 11.5 30 302-331 3-32 (197)
320 cd03216 ABC_Carb_Monos_I This 97.0 0.0016 3.4E-08 63.7 6.7 104 302-419 26-144 (163)
321 PRK05973 replicative DNA helic 97.0 0.0034 7.5E-08 65.2 9.5 39 298-336 60-101 (237)
322 cd00464 SK Shikimate kinase (S 97.0 0.0013 2.8E-08 62.9 5.8 31 304-334 1-31 (154)
323 KOG0477 DNA replication licens 97.0 0.0021 4.5E-08 73.2 8.2 62 270-333 450-513 (854)
324 COG0563 Adk Adenylate kinase a 97.0 0.0017 3.7E-08 64.6 6.8 34 304-339 2-35 (178)
325 PF00437 T2SE: Type II/IV secr 97.0 0.00079 1.7E-08 71.2 4.7 100 263-372 98-208 (270)
326 PRK13946 shikimate kinase; Pro 97.0 0.0028 6E-08 63.3 8.2 35 301-335 9-43 (184)
327 PRK12723 flagellar biosynthesi 96.9 0.0026 5.7E-08 70.7 8.8 111 301-425 173-307 (388)
328 PRK03839 putative kinase; Prov 96.9 0.00069 1.5E-08 67.1 3.9 30 305-334 3-32 (180)
329 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0062 1.4E-07 62.3 10.8 112 302-423 29-160 (213)
330 PF13191 AAA_16: AAA ATPase do 96.9 0.00055 1.2E-08 67.3 2.7 59 271-338 2-63 (185)
331 PRK00625 shikimate kinase; Pro 96.9 0.00088 1.9E-08 66.4 4.1 31 304-334 2-32 (173)
332 cd00984 DnaB_C DnaB helicase C 96.9 0.0049 1.1E-07 63.8 9.8 38 298-335 9-50 (242)
333 PRK05800 cobU adenosylcobinami 96.9 0.0087 1.9E-07 59.1 11.0 95 304-401 3-114 (170)
334 PRK04296 thymidine kinase; Pro 96.9 0.0028 6E-08 63.7 7.6 70 304-373 4-90 (190)
335 PRK13949 shikimate kinase; Pro 96.9 0.0017 3.7E-08 64.0 6.0 31 304-334 3-33 (169)
336 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0099 2.1E-07 61.0 11.7 39 298-336 12-53 (224)
337 PLN02200 adenylate kinase fami 96.9 0.0013 2.8E-08 68.4 5.1 40 299-340 40-79 (234)
338 PF10236 DAP3: Mitochondrial r 96.8 0.043 9.3E-07 59.5 17.0 119 361-480 156-308 (309)
339 PRK14974 cell division protein 96.8 0.0096 2.1E-07 65.1 11.9 73 301-373 139-234 (336)
340 PRK13948 shikimate kinase; Pro 96.8 0.0022 4.7E-08 64.1 6.4 43 300-344 8-50 (182)
341 cd01130 VirB11-like_ATPase Typ 96.8 0.0014 3.1E-08 65.5 5.1 69 302-370 25-109 (186)
342 PRK13808 adenylate kinase; Pro 96.8 0.003 6.5E-08 68.7 7.7 33 305-339 3-35 (333)
343 COG4650 RtcR Sigma54-dependent 96.8 0.0023 5.1E-08 67.0 6.5 76 300-375 206-296 (531)
344 TIGR01420 pilT_fam pilus retra 96.8 0.0018 4E-08 71.1 6.2 69 303-371 123-205 (343)
345 cd00544 CobU Adenosylcobinamid 96.8 0.01 2.2E-07 58.6 10.7 94 305-400 2-113 (169)
346 KOG3347 Predicted nucleotide k 96.8 0.0011 2.3E-08 63.3 3.4 32 303-334 8-39 (176)
347 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0092 2E-07 62.9 10.9 39 298-336 32-73 (259)
348 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0012 2.6E-08 65.3 4.0 34 305-340 2-35 (183)
349 PRK04841 transcriptional regul 96.8 0.023 5E-07 70.1 16.0 155 303-479 33-223 (903)
350 TIGR02238 recomb_DMC1 meiotic 96.7 0.0047 1E-07 67.0 8.6 115 298-413 92-242 (313)
351 COG4178 ABC-type uncharacteriz 96.7 0.0038 8.3E-08 72.3 8.3 25 300-324 417-441 (604)
352 PRK14532 adenylate kinase; Pro 96.7 0.0013 2.8E-08 65.6 3.9 36 304-341 2-37 (188)
353 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0087 1.9E-07 62.6 10.3 34 305-338 2-38 (249)
354 PRK04301 radA DNA repair and r 96.7 0.0061 1.3E-07 66.2 9.4 117 298-415 98-251 (317)
355 PRK09519 recA DNA recombinatio 96.7 0.0084 1.8E-07 71.8 11.2 117 298-414 56-194 (790)
356 PF00448 SRP54: SRP54-type pro 96.7 0.0042 9.1E-08 62.8 7.5 108 302-421 1-131 (196)
357 TIGR02782 TrbB_P P-type conjug 96.7 0.0013 2.8E-08 70.8 4.1 70 302-371 132-214 (299)
358 PRK14531 adenylate kinase; Pro 96.7 0.0015 3.3E-08 65.0 4.3 31 303-333 3-33 (183)
359 COG3854 SpoIIIAA ncharacterize 96.7 0.0036 7.7E-08 63.9 6.8 70 304-373 139-230 (308)
360 cd02020 CMPK Cytidine monophos 96.7 0.0014 3.1E-08 61.9 3.9 30 305-334 2-31 (147)
361 cd00227 CPT Chloramphenicol (C 96.7 0.0017 3.7E-08 64.1 4.5 38 303-340 3-40 (175)
362 TIGR02236 recomb_radA DNA repa 96.7 0.0073 1.6E-07 65.3 9.7 116 298-414 91-244 (310)
363 smart00534 MUTSac ATPase domai 96.7 0.0088 1.9E-07 59.7 9.5 100 305-418 2-123 (185)
364 PLN02674 adenylate kinase 96.7 0.0056 1.2E-07 63.9 8.3 38 302-341 31-68 (244)
365 PRK06217 hypothetical protein; 96.7 0.0016 3.4E-08 64.9 4.1 31 304-334 3-33 (183)
366 PLN03187 meiotic recombination 96.7 0.0046 1E-07 67.7 8.0 115 298-413 122-272 (344)
367 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0083 1.8E-07 61.7 9.6 38 298-335 16-56 (229)
368 PHA02774 E1; Provisional 96.7 0.005 1.1E-07 70.9 8.5 32 303-334 435-467 (613)
369 PRK00771 signal recognition pa 96.6 0.017 3.6E-07 65.5 12.3 37 300-336 93-132 (437)
370 PRK04328 hypothetical protein; 96.6 0.017 3.6E-07 60.6 11.6 38 298-335 19-59 (249)
371 cd02021 GntK Gluconate kinase 96.6 0.0017 3.6E-08 62.2 3.8 28 305-332 2-29 (150)
372 COG4088 Predicted nucleotide k 96.6 0.0085 1.8E-07 60.3 8.7 22 305-326 4-25 (261)
373 cd01428 ADK Adenylate kinase ( 96.6 0.0017 3.8E-08 64.6 4.0 30 305-334 2-31 (194)
374 cd02027 APSK Adenosine 5'-phos 96.6 0.007 1.5E-07 58.3 7.9 36 305-340 2-40 (149)
375 PTZ00088 adenylate kinase 1; P 96.6 0.0022 4.7E-08 66.4 4.6 34 301-334 5-38 (229)
376 PF01745 IPT: Isopentenyl tran 96.6 0.0033 7.1E-08 63.7 5.6 129 305-450 4-137 (233)
377 COG1066 Sms Predicted ATP-depe 96.6 0.016 3.4E-07 63.9 11.1 99 300-398 91-205 (456)
378 cd03238 ABC_UvrA The excision 96.6 0.015 3.3E-07 57.8 10.3 102 304-419 23-151 (176)
379 TIGR01313 therm_gnt_kin carboh 96.6 0.0018 3.9E-08 62.9 3.6 29 305-333 1-29 (163)
380 PRK12724 flagellar biosynthesi 96.6 0.023 4.9E-07 63.7 12.5 111 302-424 223-353 (432)
381 PTZ00035 Rad51 protein; Provis 96.6 0.0097 2.1E-07 65.2 9.6 115 298-413 114-264 (337)
382 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.012 2.7E-07 59.3 9.7 20 304-323 30-49 (200)
383 cd01125 repA Hexameric Replica 96.5 0.0087 1.9E-07 62.2 8.7 20 305-324 4-23 (239)
384 PF04665 Pox_A32: Poxvirus A32 96.5 0.031 6.7E-07 58.2 12.6 132 301-451 12-169 (241)
385 COG1102 Cmk Cytidylate kinase 96.5 0.002 4.4E-08 62.3 3.4 28 305-332 3-30 (179)
386 cd03243 ABC_MutS_homologs The 96.5 0.0082 1.8E-07 60.7 8.1 22 303-324 30-51 (202)
387 PRK13900 type IV secretion sys 96.5 0.0026 5.7E-08 69.5 4.7 71 301-371 159-245 (332)
388 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.014 2.9E-07 55.9 8.9 99 302-419 26-129 (144)
389 PRK06547 hypothetical protein; 96.5 0.0029 6.2E-08 62.7 4.3 35 300-334 13-47 (172)
390 PRK14530 adenylate kinase; Pro 96.5 0.0024 5.2E-08 65.2 4.0 30 304-333 5-34 (215)
391 PRK05057 aroK shikimate kinase 96.5 0.0028 6.2E-08 62.6 4.3 34 302-335 4-37 (172)
392 TIGR02239 recomb_RAD51 DNA rep 96.5 0.009 2E-07 64.9 8.5 115 298-413 92-242 (316)
393 PRK11889 flhF flagellar biosyn 96.5 0.027 5.9E-07 62.5 12.2 104 302-417 241-364 (436)
394 PF02562 PhoH: PhoH-like prote 96.5 0.003 6.6E-08 64.1 4.5 23 304-326 21-43 (205)
395 PTZ00202 tuzin; Provisional 96.5 0.21 4.5E-06 56.2 19.0 62 266-336 259-320 (550)
396 PRK08154 anaerobic benzoate ca 96.5 0.0086 1.9E-07 64.9 8.3 35 300-334 131-165 (309)
397 PRK13833 conjugal transfer pro 96.5 0.0037 8E-08 67.9 5.4 69 302-370 144-224 (323)
398 PHA02624 large T antigen; Prov 96.4 0.0043 9.3E-08 71.7 6.1 120 300-438 429-561 (647)
399 TIGR02655 circ_KaiC circadian 96.4 0.022 4.7E-07 65.6 12.0 39 298-336 17-59 (484)
400 PRK03731 aroL shikimate kinase 96.4 0.003 6.4E-08 61.9 4.2 32 303-334 3-34 (171)
401 PRK13764 ATPase; Provisional 96.4 0.0039 8.4E-08 72.8 5.7 70 302-372 257-335 (602)
402 TIGR02655 circ_KaiC circadian 96.4 0.018 3.9E-07 66.3 11.0 78 298-375 259-367 (484)
403 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0088 1.9E-07 59.5 7.4 103 303-419 26-134 (177)
404 PRK13894 conjugal transfer ATP 96.4 0.0035 7.6E-08 68.1 4.8 70 302-371 148-229 (319)
405 PLN03186 DNA repair protein RA 96.4 0.011 2.5E-07 64.7 8.7 116 298-414 119-270 (342)
406 PRK13851 type IV secretion sys 96.4 0.003 6.5E-08 69.3 4.1 73 299-371 159-246 (344)
407 PRK14526 adenylate kinase; Pro 96.4 0.0096 2.1E-07 60.9 7.5 28 305-332 3-30 (211)
408 COG1127 Ttg2A ABC-type transpo 96.4 0.014 3.1E-07 60.1 8.6 56 350-418 152-207 (263)
409 PRK02496 adk adenylate kinase; 96.4 0.0031 6.7E-08 62.6 3.8 30 305-334 4-33 (184)
410 COG2805 PilT Tfp pilus assembl 96.3 0.022 4.7E-07 60.5 10.1 139 258-442 98-251 (353)
411 PRK14528 adenylate kinase; Pro 96.3 0.0034 7.4E-08 62.8 4.1 31 304-334 3-33 (186)
412 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0082 1.8E-07 63.5 7.0 93 266-372 57-160 (264)
413 cd03246 ABCC_Protease_Secretio 96.3 0.013 2.7E-07 57.8 7.9 102 304-419 30-158 (173)
414 PRK06696 uridine kinase; Valid 96.3 0.0052 1.1E-07 63.2 5.3 39 301-339 21-62 (223)
415 TIGR02788 VirB11 P-type DNA tr 96.3 0.0045 9.9E-08 67.0 5.0 73 299-371 141-228 (308)
416 COG3842 PotA ABC-type spermidi 96.3 0.0058 1.3E-07 66.9 5.8 26 299-324 26-53 (352)
417 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0036 7.9E-08 61.9 3.9 29 304-332 5-33 (188)
418 TIGR01526 nadR_NMN_Atrans nico 96.3 0.011 2.4E-07 64.5 7.9 70 302-373 162-243 (325)
419 PRK14527 adenylate kinase; Pro 96.3 0.004 8.6E-08 62.4 4.1 34 300-333 4-37 (191)
420 PRK13695 putative NTPase; Prov 96.3 0.02 4.4E-07 56.3 9.1 22 305-326 3-24 (174)
421 cd03223 ABCD_peroxisomal_ALDP 96.3 0.021 4.5E-07 55.9 9.1 100 302-418 27-149 (166)
422 TIGR02525 plasmid_TraJ plasmid 96.3 0.0061 1.3E-07 67.5 5.8 68 304-371 151-235 (372)
423 COG5245 DYN1 Dynein, heavy cha 96.2 0.017 3.8E-07 71.4 9.7 172 300-488 1492-1715(3164)
424 TIGR01351 adk adenylate kinase 96.2 0.0038 8.3E-08 63.5 3.9 29 305-333 2-30 (210)
425 COG2074 2-phosphoglycerate kin 96.2 0.11 2.4E-06 54.0 14.2 186 299-511 86-283 (299)
426 PRK04040 adenylate kinase; Pro 96.2 0.0042 9E-08 62.4 3.9 32 302-333 2-35 (188)
427 PF13481 AAA_25: AAA domain; P 96.2 0.0098 2.1E-07 59.2 6.6 72 305-376 35-156 (193)
428 COG2874 FlaH Predicted ATPases 96.2 0.03 6.5E-07 56.8 9.8 126 289-426 13-176 (235)
429 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.0063 1.4E-07 58.8 4.9 104 303-420 26-143 (157)
430 cd03115 SRP The signal recogni 96.2 0.037 8.1E-07 54.2 10.4 32 305-336 3-37 (173)
431 cd03228 ABCC_MRP_Like The MRP 96.2 0.011 2.3E-07 58.2 6.5 104 302-420 28-158 (171)
432 COG2884 FtsE Predicted ATPase 96.2 0.023 5E-07 56.6 8.7 34 293-326 17-52 (223)
433 COG1936 Predicted nucleotide k 96.2 0.0039 8.4E-08 61.1 3.3 29 305-334 3-31 (180)
434 PF12780 AAA_8: P-loop contain 96.2 0.033 7.2E-07 59.1 10.6 90 270-371 9-99 (268)
435 smart00487 DEXDc DEAD-like hel 96.2 0.027 5.8E-07 54.8 9.4 24 303-326 25-49 (201)
436 PHA02530 pseT polynucleotide k 96.2 0.013 2.8E-07 62.8 7.7 38 302-341 2-40 (300)
437 cd03247 ABCC_cytochrome_bd The 96.2 0.024 5.3E-07 56.0 9.0 104 302-420 28-160 (178)
438 COG1120 FepC ABC-type cobalami 96.2 0.0099 2.1E-07 62.4 6.4 28 298-325 22-51 (258)
439 PRK00279 adk adenylate kinase; 96.2 0.0048 1E-07 63.0 4.1 29 305-333 3-31 (215)
440 TIGR03499 FlhF flagellar biosy 96.1 0.014 3E-07 62.5 7.7 37 301-337 193-234 (282)
441 PRK06581 DNA polymerase III su 96.1 0.048 1.1E-06 56.5 11.0 136 300-454 13-163 (263)
442 PRK09302 circadian clock prote 96.1 0.044 9.6E-07 63.5 12.3 39 298-336 27-69 (509)
443 PF13245 AAA_19: Part of AAA d 96.1 0.0076 1.6E-07 51.4 4.4 31 305-335 13-50 (76)
444 PF09848 DUF2075: Uncharacteri 96.1 0.011 2.4E-07 65.2 6.9 23 304-326 3-25 (352)
445 PRK14529 adenylate kinase; Pro 96.1 0.013 2.9E-07 60.3 7.1 28 305-332 3-30 (223)
446 PF00406 ADK: Adenylate kinase 96.1 0.012 2.6E-07 56.5 6.3 35 307-343 1-35 (151)
447 COG2274 SunT ABC-type bacterio 96.1 0.015 3.3E-07 69.5 8.5 56 349-419 615-670 (709)
448 TIGR02533 type_II_gspE general 96.1 0.012 2.5E-07 67.7 7.3 93 265-371 218-321 (486)
449 COG2804 PulE Type II secretory 96.1 0.012 2.5E-07 66.6 7.0 95 264-372 233-338 (500)
450 PRK10416 signal recognition pa 96.1 0.062 1.3E-06 58.5 12.4 36 300-335 112-150 (318)
451 PRK05541 adenylylsulfate kinas 96.1 0.015 3.2E-07 57.4 7.0 40 300-339 5-47 (176)
452 PRK08099 bifunctional DNA-bind 96.1 0.013 2.9E-07 65.6 7.4 39 301-339 218-256 (399)
453 PF08423 Rad51: Rad51; InterP 96.1 0.012 2.5E-07 62.1 6.6 116 305-421 41-192 (256)
454 PF05272 VirE: Virulence-assoc 96.1 0.015 3.2E-07 59.0 7.0 110 298-437 48-168 (198)
455 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.032 7E-07 57.5 9.6 104 303-420 32-157 (222)
456 PRK01184 hypothetical protein; 96.0 0.0056 1.2E-07 60.8 3.8 29 304-333 3-31 (184)
457 COG4586 ABC-type uncharacteriz 96.0 0.015 3.2E-07 60.9 6.9 31 296-326 42-74 (325)
458 cd03230 ABC_DR_subfamily_A Thi 96.0 0.012 2.6E-07 58.0 6.0 101 304-418 28-156 (173)
459 TIGR00064 ftsY signal recognit 96.0 0.061 1.3E-06 57.2 11.8 36 300-335 70-108 (272)
460 PF06414 Zeta_toxin: Zeta toxi 96.0 0.015 3.3E-07 58.6 6.9 41 300-340 13-54 (199)
461 PRK10867 signal recognition pa 96.0 0.074 1.6E-06 60.2 12.9 74 300-373 98-195 (433)
462 PF06480 FtsH_ext: FtsH Extrac 96.0 0.0029 6.3E-08 56.7 1.3 69 135-203 22-108 (110)
463 PLN02459 probable adenylate ki 96.0 0.022 4.7E-07 60.0 8.0 35 303-339 30-64 (261)
464 PRK04182 cytidylate kinase; Pr 95.9 0.0067 1.4E-07 59.5 3.9 29 305-333 3-31 (180)
465 cd03227 ABC_Class2 ABC-type Cl 95.9 0.025 5.5E-07 55.1 7.8 22 302-323 21-42 (162)
466 KOG0058 Peptide exporter, ABC 95.9 0.028 6E-07 65.9 9.3 25 300-324 492-516 (716)
467 cd03213 ABCG_EPDR ABCG transpo 95.9 0.054 1.2E-06 54.4 10.4 25 302-326 35-59 (194)
468 PF13238 AAA_18: AAA domain; P 95.9 0.0053 1.1E-07 56.4 2.8 22 305-326 1-22 (129)
469 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.019 4.1E-07 60.1 7.1 56 350-419 146-201 (254)
470 PRK05703 flhF flagellar biosyn 95.9 0.035 7.6E-07 62.8 9.8 36 302-337 221-261 (424)
471 COG1131 CcmA ABC-type multidru 95.9 0.018 4E-07 61.8 7.2 28 299-326 26-55 (293)
472 TIGR00152 dephospho-CoA kinase 95.9 0.036 7.7E-07 55.3 8.8 35 305-341 2-36 (188)
473 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.053 1.2E-06 55.2 10.1 103 303-421 30-155 (204)
474 COG1136 SalX ABC-type antimicr 95.9 0.051 1.1E-06 56.0 10.0 20 305-324 34-53 (226)
475 TIGR00767 rho transcription te 95.9 0.02 4.4E-07 63.6 7.5 23 304-326 170-192 (415)
476 cd03215 ABC_Carb_Monos_II This 95.9 0.038 8.2E-07 54.9 8.9 24 303-326 27-50 (182)
477 cd02019 NK Nucleoside/nucleoti 95.9 0.0088 1.9E-07 49.8 3.6 22 305-326 2-23 (69)
478 PRK10263 DNA translocase FtsK; 95.9 0.041 9E-07 68.5 10.7 74 363-449 1142-1217(1355)
479 TIGR00150 HI0065_YjeE ATPase, 95.8 0.015 3.2E-07 55.1 5.5 27 303-329 23-49 (133)
480 cd03232 ABC_PDR_domain2 The pl 95.8 0.061 1.3E-06 53.9 10.3 23 303-325 34-56 (192)
481 PF13521 AAA_28: AAA domain; P 95.8 0.009 1.9E-07 58.1 4.2 34 305-339 2-35 (163)
482 TIGR02173 cyt_kin_arch cytidyl 95.8 0.0081 1.8E-07 58.4 3.8 29 305-333 3-31 (171)
483 TIGR01448 recD_rel helicase, p 95.8 0.025 5.4E-07 68.1 8.7 99 304-419 340-457 (720)
484 PRK13541 cytochrome c biogenes 95.8 0.092 2E-06 52.7 11.5 25 302-326 26-50 (195)
485 PRK08233 hypothetical protein; 95.7 0.01 2.2E-07 58.4 4.1 32 303-334 4-36 (182)
486 TIGR01425 SRP54_euk signal rec 95.7 0.081 1.8E-06 59.6 11.7 36 301-336 99-137 (429)
487 PLN02199 shikimate kinase 95.7 0.018 4E-07 61.5 6.2 32 303-334 103-134 (303)
488 cd03214 ABC_Iron-Siderophores_ 95.7 0.054 1.2E-06 53.7 9.3 24 303-326 26-49 (180)
489 PRK09302 circadian clock prote 95.7 0.043 9.4E-07 63.5 9.9 78 298-375 269-377 (509)
490 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.031 6.8E-07 61.7 8.3 68 304-371 136-222 (358)
491 COG4608 AppF ABC-type oligopep 95.7 0.027 5.9E-07 59.1 7.2 72 303-374 40-140 (268)
492 cd03284 ABC_MutS1 MutS1 homolo 95.6 0.046 9.9E-07 56.1 8.6 22 303-324 31-52 (216)
493 PF05970 PIF1: PIF1-like helic 95.6 0.062 1.3E-06 59.6 10.1 43 275-326 4-46 (364)
494 PRK00889 adenylylsulfate kinas 95.6 0.045 9.7E-07 53.8 8.0 38 302-339 4-44 (175)
495 PF08433 KTI12: Chromatin asso 95.6 0.035 7.6E-07 59.0 7.6 68 305-373 4-82 (270)
496 TIGR01069 mutS2 MutS2 family p 95.6 0.056 1.2E-06 65.5 10.3 23 303-325 323-345 (771)
497 COG1118 CysA ABC-type sulfate/ 95.5 0.034 7.4E-07 59.2 7.3 21 304-324 30-50 (345)
498 COG5271 MDN1 AAA ATPase contai 95.5 0.042 9.2E-07 68.8 8.9 133 304-451 890-1046(4600)
499 TIGR03819 heli_sec_ATPase heli 95.5 0.014 3.1E-07 64.0 4.7 70 302-371 178-263 (340)
500 PRK13538 cytochrome c biogenes 95.5 0.099 2.1E-06 52.8 10.5 24 303-326 28-51 (204)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-107 Score=908.76 Aligned_cols=567 Identities=58% Similarity=0.931 Sum_probs=521.2
Q ss_pred ceechHHHHHHHHcCCeeEEEEeeCCcEEEEEEeCCcEEEEECC---CChhHHHHHHhCCcceeeccCCCCcchHHHHHH
Q 004921 141 SQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVP---NDPDLIDILAMNGVDISVSEGDSGNGLFSFVGN 217 (723)
Q Consensus 141 ~~i~~s~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~p---~~~~l~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 217 (723)
..++|++|...+..+.|+++.+...+..+..+.+++....+..| .++++...+..+++.+....+...+.|..++.+
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDNSLLASLLST 102 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcceEEeecCCcccHHHHHHHHhcCCcccccCCCcccHHHHHHHH
Confidence 57999999999999999999997665677777778754445444 377899999999987666544443444554444
Q ss_pred hHHHHHHHHH-HHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhh
Q 004921 218 LLFPFLAFAG-LFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTA 296 (723)
Q Consensus 218 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~ 296 (723)
+ +|++++.+ +||+++|++.++++ .+ .+++++|+++........++|.|++|.+++|++|.|+|++|++|.+|.+
T Consensus 103 ~-lp~il~~~~~~~~~~r~~~~g~g---~~-~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~ 177 (596)
T COG0465 103 W-LPFILLIGLGWFFFRRQAQGGGG---GG-AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQA 177 (596)
T ss_pred H-HHHHHHHHHHHHHHHHHhhcCCC---Cc-ccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHh
Confidence 4 56666555 44445554333322 12 7899999999988888899999999999999999999999999999999
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhh
Q 004921 297 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 297 ~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
+|.+.|+|+||+||||||||+||||+|+|+++||+.+|+|+|+++|+|.+++++|++|.+|++.+||||||||||+++++
T Consensus 178 lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~ 257 (596)
T COG0465 178 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ 257 (596)
T ss_pred cccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~ 456 (723)
|+.+.+++++++++++||||.+||++..+.+|+||++||+|+.+|+||+||||||++|.++.||..+|++|++.|++++.
T Consensus 258 Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~ 337 (596)
T COG0465 258 RGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP 337 (596)
T ss_pred cCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHH
Q 004921 457 LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHA 536 (723)
Q Consensus 457 l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGha 536 (723)
+.+++|+..+|+.|+||+|+|+.|++|+|++.|+|+++..|++.||++|.+++++|+++++..+++.+++.+||||+|||
T Consensus 338 l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEagha 417 (596)
T COG0465 338 LAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHA 417 (596)
T ss_pred CCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHH
Q 004921 537 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQV 616 (723)
Q Consensus 537 lv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~A 616 (723)
++++++++.++|+|+||+|||+++||+++.|.++++ ++|+.+++++|+++||||+||+++||. ++||||++||++|
T Consensus 418 lv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~---l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~a 493 (596)
T COG0465 418 LVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKY---LMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKA 493 (596)
T ss_pred HHHHhCCCCcccceeeeccCchhhcchhcCCccccc---cccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHH
Confidence 999999999999999999999999999999988654 789999999999999999999999997 7999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004921 617 SRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQ 696 (723)
Q Consensus 617 T~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~ 696 (723)
|++|+.||++|||++++|++.+....+ .|||+.. ..+.||++|++.||.||++++++||++|++||.+|++.++.+++
T Consensus 494 t~~ar~mVt~~Gms~~lG~v~~~~~~~-~flg~~~-~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~ 571 (596)
T COG0465 494 TDLARAMVTEYGMSAKLGPVAYEQVEG-VFLGRYQ-KAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAE 571 (596)
T ss_pred HHHHHHhhhhcCcchhhCceehhhccc-ccccccc-cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999998766 9999887 77899999999999999999999999999999999999999999
Q ss_pred HHHHhcccCHHHHHHHHccCcc
Q 004921 697 LLIEKETVDGEEFMSLFIDGKA 718 (723)
Q Consensus 697 ~Lle~EtL~g~ei~~il~~~~~ 718 (723)
.|+++|||+++++.+|+...+.
T Consensus 572 ~Lle~Eti~~~~i~~i~~~~~~ 593 (596)
T COG0465 572 MLLEKETIDAEEIKDILAGRKL 593 (596)
T ss_pred HHHHhhccCHHHHHHHHhcccC
Confidence 9999999999999999987643
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-104 Score=851.47 Aligned_cols=445 Identities=50% Similarity=0.809 Sum_probs=424.5
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
..+....+++|+||.|+|++|++|+|+|+||++|.+|..+|.++|+||||+||||||||+||||+|+|+++||++.++++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34445568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
|-++|+|++++++|++|..|+..+||||||||||+++.+|... ...+.++++||||.+||||..+.+||||++||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 9999999999999999999999999999999999999988652 2238899999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 497 (723)
+.||+||.||||||++|.+|.||...|.+||+.|+.++.++.++|+..||+-|.||+|+||+|+||.|++.|+..+...+
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhcccc
Q 004921 498 SKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLY 577 (723)
Q Consensus 498 ~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~ 577 (723)
++.+++.|-+++++|++++...++++.++++||||.|||||+.++.+..|++|+||.|||.++|.+.+.|+.+++ .+
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~---~~ 606 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRY---SI 606 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchh---hH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 57
Q ss_pred CHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccc
Q 004921 578 SRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDY 657 (723)
Q Consensus 578 t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~ 657 (723)
||.++++++.||||||+|||++||.+.+||||++||.+||++|++||+.||||+++|++++..... ..+.
T Consensus 607 Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~----------~~s~ 676 (752)
T KOG0734|consen 607 TKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN----------SSSL 676 (752)
T ss_pred HHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC----------CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999875322 3456
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHccCcc
Q 004921 658 SMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 718 (723)
Q Consensus 658 s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~il~~~~~ 718 (723)
+.+++..||.||+++|+++|+||+.||+.|...+++||++||++|||+++||++++++...
T Consensus 677 ~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~~ 737 (752)
T KOG0734|consen 677 SPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKSD 737 (752)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccch
Confidence 7788899999999999999999999999999999999999999999999999999976543
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-97 Score=839.31 Aligned_cols=565 Identities=54% Similarity=0.846 Sum_probs=483.3
Q ss_pred CceechHHH-HHHHHcCCeeEEEEeeCCcEEEEEE----eCC----cEEE-EECC--CChhHHHHHH-hCCcce-eeccC
Q 004921 140 GSQWRYSEF-LNAVKKGKVERVRFSKDGSALQLTA----VDG----RRAT-VIVP--NDPDLIDILA-MNGVDI-SVSEG 205 (723)
Q Consensus 140 ~~~i~~s~f-~~~~~~~~v~~v~~~~~~~~~~~~~----~~~----~~~~-~~~p--~~~~l~~~l~-~~~v~~-~~~~~ 205 (723)
.+.|+|.+| .+++++|.|.++.+.+.-....+.. +++ ..+. ...+ +-++-++... .-+++. ...+.
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~v~~F~~kl~~a~~~l~~~~~~~~pV 242 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRSVDNFERKLDEAQRNLGIDTVVRVPV 242 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecccchHHHHHHHHHHHhCCCceeEeee
Confidence 457999999 5579999999988865211112221 121 1221 1222 2122222222 223221 11111
Q ss_pred --CCCcchHHHHHHhHHH-HHHHHHHHHHHHhhcC-CCCCCCCCCCCcccccccc--ccccccCCCccccccccchHhHH
Q 004921 206 --DSGNGLFSFVGNLLFP-FLAFAGLFFLFRRAQG-GPGGPGGLGGPMDFGRSKS--KFQEVPETGVTFADVAGADQAKL 279 (723)
Q Consensus 206 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dv~G~~~~k~ 279 (723)
.....+ ......++| ++++++++++++++.+ +.+++++..+++.|+.+++ ++....+++++|+||+|++++|+
T Consensus 243 ~~~~~~~~-~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK~ 321 (774)
T KOG0731|consen 243 TYISESLL-DLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAKE 321 (774)
T ss_pred EEeecchh-hhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHHH
Confidence 111223 333344456 6777777777887764 1222333444455655555 77778888999999999999999
Q ss_pred HHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHc
Q 004921 280 ELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS 359 (723)
Q Consensus 280 ~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~ 359 (723)
+|+|+|.||+||+.|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|+++++|.+++++|++|..|+.
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~ 401 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARK 401 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCccchhhhcC-CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCC
Q 004921 360 KAPCIVFIDEIDAVGRQRG-AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~-~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~ 438 (723)
.+||||||||||+++..|+ ...+++++++++++||||.+|||+....+|+|+++||+++.||+||+||||||++|.+++
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 9999999999999999994 446678899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCccc
Q 004921 439 PDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKN 517 (723)
Q Consensus 439 Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~ 517 (723)
|+..+|.+|++.|++++.++ +++|+..+|..|+||+|+||.|+||+|++.|+|++...|+..|+.+|++|++.|.+++.
T Consensus 482 p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~ 561 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKS 561 (774)
T ss_pred CchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccc
Confidence 99999999999999999985 78899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhh
Q 004921 518 AVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEE 597 (723)
Q Consensus 518 ~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~ 597 (723)
..++.++++.+||||+|||+++|++++.+++.++||+| |+++||+++.|.++ .++++++|.++|++.|||||||+
T Consensus 562 ~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~----~l~sk~ql~~rm~m~LGGRaAEe 636 (774)
T KOG0731|consen 562 RVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD----YLLSKEQLFDRMVMALGGRAAEE 636 (774)
T ss_pred hhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc----ccccHHHHHHHHHHHhCcchhhh
Confidence 99999999999999999999999999999999999999 77999999999887 48999999999999999999999
Q ss_pred hhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHHHHHHHHHHHHHHHHHH
Q 004921 598 VIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAY 677 (723)
Q Consensus 598 ~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~ 677 (723)
++|| +.+||||.+||++||++|+.||++|||++++|++++... .+..+....+||..+++.||.||++++..||
T Consensus 637 v~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~-----~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay 710 (774)
T KOG0731|consen 637 VVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQML-----LPGDESFRKPYSEKTAQLIDTEVRRLVQKAY 710 (774)
T ss_pred eecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCc-----ccccccccCccchhHHHHHHHHHHHHHhhHH
Confidence 9999 679999999999999999999999999999999999432 2223455689999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHccC
Q 004921 678 TRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDG 716 (723)
Q Consensus 678 ~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~il~~~ 716 (723)
++|.++|++|++.++.||+.||++|+|+++|+.+++...
T Consensus 711 ~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~ 749 (774)
T KOG0731|consen 711 ERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGER 749 (774)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccC
Confidence 999999999999999999999999999999999999764
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3e-95 Score=838.56 Aligned_cols=569 Identities=54% Similarity=0.891 Sum_probs=512.3
Q ss_pred ceechHHHHHHHHcCCeeEEEEeeCCcE--EEEEEeC-C---cEEEEECC-CChhHHHHHHhCCcceeeccCCCCcchHH
Q 004921 141 SQWRYSEFLNAVKKGKVERVRFSKDGSA--LQLTAVD-G---RRATVIVP-NDPDLIDILAMNGVDISVSEGDSGNGLFS 213 (723)
Q Consensus 141 ~~i~~s~f~~~~~~~~v~~v~~~~~~~~--~~~~~~~-~---~~~~~~~p-~~~~l~~~l~~~~v~~~~~~~~~~~~~~~ 213 (723)
++++||+|++++++|+|.+|.+.+++.. +....++ | ..+.+.+| .++++.+.|.+++|++...+......|..
T Consensus 50 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 129 (638)
T CHL00176 50 SRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLKSNIVT 129 (638)
T ss_pred ceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCccchHHH
Confidence 3589999999999999999999755432 2222222 2 23455677 48899999999999998765544455777
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchh
Q 004921 214 FVGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDK 293 (723)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~ 293 (723)
.+.++++|++++++++|++.+....+++ ..+..+++++++.++.......++|+||+|++++|+++.++++++++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~ 207 (638)
T CHL00176 130 ILSNLLLPLILIGVLWFFFQRSSNFKGG--PGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPER 207 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHH
Confidence 7888888888888787766554322111 11235788999888888888889999999999999999999999999999
Q ss_pred hhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 294 YTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 294 ~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+..+++.+|..|+..+||||||||||.+
T Consensus 208 ~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 208 FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc
Q 004921 374 GRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 374 ~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
+.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||+.|++
T Consensus 288 ~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 288 GRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred hhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 98887766677888899999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHH
Q 004921 454 GKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEA 533 (723)
Q Consensus 454 ~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEa 533 (723)
+..+..++++..++..+.||+++||.++|++|++.+++++...++.+||.+|+++++.|.+++. ..++.+++++||||+
T Consensus 368 ~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEa 446 (638)
T CHL00176 368 NKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEV 446 (638)
T ss_pred hcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhh
Confidence 8888888999999999999999999999999999999999999999999999999999987764 467778999999999
Q ss_pred HHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCccchH
Q 004921 534 GHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDF 613 (723)
Q Consensus 534 Ghalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl 613 (723)
|||+++++++..++|++|||+|||+++||+++.|.+++. ++||.+++++|+++|||||||+++||++++|+||++||
T Consensus 447 GhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~---~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl 523 (638)
T CHL00176 447 GHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQS---LVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDL 523 (638)
T ss_pred hhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccc---cccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHH
Confidence 999999999999999999999999999999999987654 78999999999999999999999999878999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcceeeCCCCC-CCCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004921 614 MQVSRVARQMVERFGFSKKIGQVAIGGPGG-NPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILH 692 (723)
Q Consensus 614 ~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~-~~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~ 692 (723)
++||++|+.||++||||+ +|++++..... ..|+|+.+.....||++++..||.||+++|++||++|++||++||+.|+
T Consensus 524 ~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~ 602 (638)
T CHL00176 524 QQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLID 602 (638)
T ss_pred HHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999995 99999986665 7899988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHccC
Q 004921 693 KLAQLLIEKETVDGEEFMSLFIDG 716 (723)
Q Consensus 693 ~la~~Lle~EtL~g~ei~~il~~~ 716 (723)
+||++|+|+|+|+++||++|+...
T Consensus 603 ~la~~Lle~Etl~~~ei~~il~~~ 626 (638)
T CHL00176 603 LLVELLLQKETIDGDEFREIVNSY 626 (638)
T ss_pred HHHHHHHHhCccCHHHHHHHHhhc
Confidence 999999999999999999999764
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.3e-89 Score=799.52 Aligned_cols=568 Identities=51% Similarity=0.854 Sum_probs=512.7
Q ss_pred CceechHHHHHHHHcCCeeEEEEeeCCcEEEEEEeCCcEEEEECC-CChhHHHHHHhCCcceeeccCCCCcchHHHHHHh
Q 004921 140 GSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVIVP-NDPDLIDILAMNGVDISVSEGDSGNGLFSFVGNL 218 (723)
Q Consensus 140 ~~~i~~s~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 218 (723)
.+.++|+.|.+.+.++.+.++.+. ...+....+++..+....| .++.+...+.++++++...+... ..+...+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~v~Ev~~~--~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~-~~~~~~i~~~ 105 (644)
T PRK10733 29 GRKVDYSTFLQEVNQDQVREARIN--GREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEE-PSLLASIFIS 105 (644)
T ss_pred cccCCHHHHHHHHHcCCeEEEEEe--CCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCccc-chHHHHHHHH
Confidence 356899999999999999999985 4467777778877776666 56788899999999887654443 3344444455
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhC
Q 004921 219 LFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALG 298 (723)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g 298 (723)
++|+++++++|+++.+.+.+++ .++.+.|..++..+........+|+|+.|.+.+++++.+++.+++++..|..++
T Consensus 106 ~~~~il~ig~~~v~~g~mt~G~----~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~ 181 (644)
T PRK10733 106 WFPMLLLIGVWIFFMRQMQGGG----GKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG 181 (644)
T ss_pred HHHHHHHHHHHHHHHhhhcCCC----CceeEEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcC
Confidence 5666666666655544333221 134667777777777666667899999999999999999999999999999999
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcC
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~ 378 (723)
...|+|+||+||||||||++++++|+++++||+.++++++.+.+.|.+..+++++|..++..+||||||||+|.++.+|+
T Consensus 182 ~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 182 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC
Q 004921 379 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA 458 (723)
Q Consensus 379 ~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~ 458 (723)
.+.++++.+..+++|+||.+||++..+.+++||+|||+|+.||++++||||||++|.+++|+.++|.+||+.|+++.++.
T Consensus 262 ~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~ 341 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341 (644)
T ss_pred CCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC
Confidence 76667788889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHH
Q 004921 459 KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALV 538 (723)
Q Consensus 459 ~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv 538 (723)
.++|+..+++.+.||||+||.++|++|+..|++++...|+.+|+.+|++++..+.+++...+++++++.+||||+|||++
T Consensus 342 ~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~ 421 (644)
T PRK10733 342 PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAII 421 (644)
T ss_pred CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877778889999999999999999
Q ss_pred hhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHH
Q 004921 539 GALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSR 618 (723)
Q Consensus 539 ~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~ 618 (723)
++++++.+++.+|||+|||+++||+++.|.++.+ .+||.+++++|+++|||||||+++||.+++||||++||++||+
T Consensus 422 ~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~---~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~ 498 (644)
T PRK10733 422 GRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI---SASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATN 498 (644)
T ss_pred HHHccCCCceeEEEEeccCCCcceeEECCCcccc---cccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999987754 5799999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004921 619 VARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLL 698 (723)
Q Consensus 619 lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~~L 698 (723)
||++||++||||+++|++.+....+..|+|++....+.||+++++.||+||+++|++||++|++||++||+.|++||++|
T Consensus 499 lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~L 578 (644)
T PRK10733 499 LARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDAL 578 (644)
T ss_pred HHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999877778899988877889999999999999999999999999999999999999999999
Q ss_pred HHhcccCHHHHHHHHccCc
Q 004921 699 IEKETVDGEEFMSLFIDGK 717 (723)
Q Consensus 699 le~EtL~g~ei~~il~~~~ 717 (723)
+|+|+|+++||++|+.+.+
T Consensus 579 le~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 579 MKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHhceeCHHHHHHHHhcCC
Confidence 9999999999999998754
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.8e-83 Score=729.43 Aligned_cols=494 Identities=64% Similarity=1.010 Sum_probs=455.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccCCCccccccccchHhHHHHHHHHHHhcC
Q 004921 211 LFSFVGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKN 290 (723)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~ 290 (723)
|.+++.++.+|++++++.|+++++...++| ++.+.+++++.++.....+.++|+||+|++++|+++++++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~ 76 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGGG-----GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKN 76 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHC
Confidence 567777877778888877776654333221 345667888888888888899999999999999999999999999
Q ss_pred chhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCc
Q 004921 291 PDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEI 370 (723)
Q Consensus 291 ~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEi 370 (723)
++.|..+|.++|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+...++.+|+.|+..+|||||||||
T Consensus 77 ~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 77 PSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 004921 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 371 D~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~ 450 (723)
|.++.+++.+..+.+.+..+++++||.+||++..+.+++||+|||+|+.||++++||||||+.|++++|+.++|.+||+.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 99998887655556777889999999999999988899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHH
Q 004921 451 HSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAY 530 (723)
Q Consensus 451 ~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~ 530 (723)
++++..+..++++..++..+.|||++||.++|++|+..|.+++...|+.+|+.+|++++..+++++...+++.+++++|+
T Consensus 237 ~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~ 316 (495)
T TIGR01241 237 HAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAY 316 (495)
T ss_pred HHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 99988887888999999999999999999999999999999988999999999999999999887777788899999999
Q ss_pred HHHHHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCcc
Q 004921 531 HEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGAS 610 (723)
Q Consensus 531 hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas 610 (723)
||+|||++++++++..++.++||.|||.++||+++.|.++. ...|+.+++++|+++|||||||+++||+ +|+|++
T Consensus 317 hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~---~~~t~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~ 391 (495)
T TIGR01241 317 HEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDK---YLYTKSQLLAQIAVLLGGRAAEEIIFGE--VTTGAS 391 (495)
T ss_pred HHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCcccc---ccCCHHHHHHHHHHHhhHHHHHHHHhcC--CCCCch
Confidence 99999999999998899999999999999999999887643 3689999999999999999999999995 899999
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004921 611 NDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDI 690 (723)
Q Consensus 611 ~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~ 690 (723)
+||++||++|+.||.+||||+.+|++++....+..|+|.++....++++.++..+|.+|+++|+++|++|+++|++||++
T Consensus 392 ~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~ 471 (495)
T TIGR01241 392 NDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDE 471 (495)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999998766667888877777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHc
Q 004921 691 LHKLAQLLIEKETVDGEEFMSLFI 714 (723)
Q Consensus 691 L~~la~~Lle~EtL~g~ei~~il~ 714 (723)
|++||++|+++|+|+++||++|+.
T Consensus 472 l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 472 LELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHcCeeCHHHHHHHhC
Confidence 999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-57 Score=472.38 Aligned_cols=255 Identities=46% Similarity=0.778 Sum_probs=247.5
Q ss_pred cccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
....+.++|+||+|+++++++|+|.|.. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3456789999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
+.+|.|++++.+|++|..|+.++||||||||||+++.+|.....+++.+.++++-+||.+||||...++|-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~ 498 (723)
.|||||+|||||||.|+||+||.++|.+||+.|.+++.+..++||+.|++.++|+|||||+++|.+|.+.|.|+.+..++
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 004921 499 KDEISDALERIIAGPE 514 (723)
Q Consensus 499 ~edl~~Al~~~~~g~~ 514 (723)
++||.+|.++++....
T Consensus 382 ~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 382 MEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.1e-53 Score=513.45 Aligned_cols=317 Identities=20% Similarity=0.292 Sum_probs=272.3
Q ss_pred hhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH-----------------------------
Q 004921 292 DKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF----------------------------- 342 (723)
Q Consensus 292 ~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~----------------------------- 342 (723)
..+.++|..+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345678999999999999999999999999999999999999999998643
Q ss_pred ------------h--hhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---CC
Q 004921 343 ------------V--GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---GN 405 (723)
Q Consensus 343 ------------~--G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---~~ 405 (723)
+ +++..+++.+|+.|++.+||||||||||+++.+. ....++++|+.+||+.. ..
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCC
Confidence 1 2234459999999999999999999999997641 22346899999999874 45
Q ss_pred CceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH--hcCCCCCcc-ccHHHHHhhCCCCCHHHHHHHH
Q 004921 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH--SRGKALAKD-VDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~--l~~~~l~~d-~dl~~La~~t~G~sgadL~~lv 482 (723)
.+|+||||||+|+.|||||+||||||+.|.++.|+..+|++++..+ .++..+..+ +|+..+|+.|.|||||||+++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999999999988854 455555543 6899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeeccc------
Q 004921 483 NEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR------ 556 (723)
Q Consensus 483 ~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~pr------ 556 (723)
++|++.|+++++..|+.+++..|++|+++|.+.+. .+..++ .+++||+|||+++.+++..+||.+|||+++
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~--~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~ 1927 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV--RSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKE 1927 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc--cCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccC
Confidence 99999999999999999999999999999987543 233333 369999999999999999999999999632
Q ss_pred CCCCceeeecCchhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCC----
Q 004921 557 GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKK---- 632 (723)
Q Consensus 557 g~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~---- 632 (723)
+.+.||+++.|.+ ..+++.+++.+|.+||||||||++||+.+. .++.||+.|||.++
T Consensus 1928 ~~~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEnD~~L 1988 (2281)
T CHL00206 1928 GDSYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVENDSDL 1988 (2281)
T ss_pred cccceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhhhhHH
Confidence 4567999999865 378999999999999999999999998632 57899999999988
Q ss_pred -CcceeeC
Q 004921 633 -IGQVAIG 639 (723)
Q Consensus 633 -lg~v~~~ 639 (723)
.|++.+.
T Consensus 1989 a~glLe~e 1996 (2281)
T CHL00206 1989 VHGLLEVE 1996 (2281)
T ss_pred hHhHHHhc
Confidence 5665543
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=449.62 Aligned_cols=323 Identities=37% Similarity=0.601 Sum_probs=266.3
Q ss_pred EEEECCCChhHHHHHHhCCcceeeccCCC----CcchHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 004921 179 ATVIVPNDPDLIDILAMNGVDISVSEGDS----GNGLFSFVGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRS 254 (723)
Q Consensus 179 ~~~~~p~~~~l~~~l~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 254 (723)
..+.+|+.....+.+..++-.+....... .....++++..+-.++..+.+--+.+.+..-. ...+....|
T Consensus 346 v~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~------~A~~~i~ps 419 (693)
T KOG0730|consen 346 VEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQ------EALMGIRPS 419 (693)
T ss_pred eeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHH------HHHhcCCch
Confidence 45678876665666655433222211110 02345667777766666655443333111000 000111111
Q ss_pred ccccccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 255 KSKFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 255 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
-.+-..++-++++|+||+|++++|.+|++.|.| +++|+.|.++|+.+|+|||||||||||||++|||+|++++.+|+++
T Consensus 420 a~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 420 ALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred hhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 112222556789999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 334 AASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 334 s~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
.+.++.++|+|++++.++++|++|+..+|||||+||||+++..|++.. +....+++++||++|||+....+|+|||+
T Consensus 500 kgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 500 KGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred cCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEec
Confidence 999999999999999999999999999999999999999999997422 26778999999999999999999999999
Q ss_pred eCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 004921 414 TNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (723)
Q Consensus 414 TN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 493 (723)
||+|+.||+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..||..|+||||+||.++|++|++.|.++.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C--CCCCHHHHHHHHHHHH
Q 004921 494 L--KEISKDEISDALERII 510 (723)
Q Consensus 494 ~--~~I~~edl~~Al~~~~ 510 (723)
- ..|+.+||++|+..+.
T Consensus 657 i~a~~i~~~hf~~al~~~r 675 (693)
T KOG0730|consen 657 IEATEITWQHFEEALKAVR 675 (693)
T ss_pred cccccccHHHHHHHHHhhc
Confidence 4 4689999999998754
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-48 Score=422.67 Aligned_cols=245 Identities=44% Similarity=0.765 Sum_probs=229.0
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
++++|+||+|+++++.+|...+.+ .|+|+.|+.+|+..|.|||||||||||||+||||+|+|+|.+|+.+.+.+++++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 459999999999999999997776 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
+|+++..+|.+|.+|+..+|||||+||+|+|.++|+.. ++....+++||||++|||++.+.+|.||+|||+|+.+||
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~---~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE---GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC---CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 99999999999999999999999999999999999863 356678899999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhc--CCCCCccccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhCCC---
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSR--GKALAKDVDFEKISRRTP--GFTGADLQNLMNEAAILAARRDLK--- 495 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~--~~~l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~r~~~~--- 495 (723)
|++||||||+.+++++|+.++|.+||+.+++ +..+..|+|++.||+.+. ||||+||..||++|.+.|.++...
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 788899999999999887 999999999999999999886311
Q ss_pred -------------CCCHHHHHHHHHHHHc
Q 004921 496 -------------EISKDEISDALERIIA 511 (723)
Q Consensus 496 -------------~I~~edl~~Al~~~~~ 511 (723)
.++..||++|+.++..
T Consensus 743 ~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 743 SSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred ccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 2456799999988643
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=360.38 Aligned_cols=255 Identities=38% Similarity=0.649 Sum_probs=244.4
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
-+.+..++.+++.||+|++-.|+++++.++. |.+.+.|++.|+.+|+|+|+|||||||||+|++|+|+.....|+.+.+
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg 222 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence 3444557789999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 336 SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 336 s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
++|+.+|.|++...+|++|..|+.++|+||||||||++..+|-..+.+.+.+.++++-+||++||||....+|-||.+||
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 99999999999999999999999999999999999999999988778888899999999999999999999999999999
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 004921 416 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (723)
Q Consensus 416 ~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 495 (723)
+.+.|||+|+||||+|+.|+||+||..+++-++.....++.+.+++|++.+..+-...|++||..+|++|.+.|.|.++-
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry 382 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY 382 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 004921 496 EISKDEISDALERIIA 511 (723)
Q Consensus 496 ~I~~edl~~Al~~~~~ 511 (723)
.+...|++++....+.
T Consensus 383 vvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 383 VVLQKDFEKAYKTVVK 398 (408)
T ss_pred eeeHHHHHHHHHhhcC
Confidence 9999999999887764
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=400.00 Aligned_cols=229 Identities=47% Similarity=0.808 Sum_probs=217.6
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
.+.++++|.||+|++....+|.+++..+++|+.|..+|..+|+|+|||||||||||+||+|+|+++++||+.+++.++++
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC----CceEEEEeeCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN----SGVIVLAATNR 416 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~----~~ViVIaaTN~ 416 (723)
.+.|++++++|++|++|+..+|||+||||||+++++|.. .+.+-.++++.|||+.||++... .+|+||+|||+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 999999999999999999999999999999999999875 23445568999999999998654 57999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
|+.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.|+||..||.+|+..|.+|
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-45 Score=365.88 Aligned_cols=265 Identities=42% Similarity=0.717 Sum_probs=250.1
Q ss_pred ccccccccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 253 RSKSKFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 253 ~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
.|.+-++...++.++++||+|+.+..+.|+++++. |.+|++|-.+|+.+|+|+|+|||||||||++|||+|+..+..|+
T Consensus 161 psvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfi 240 (435)
T KOG0729|consen 161 PSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFI 240 (435)
T ss_pred CceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEE
Confidence 34444555667889999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred eechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 332 SCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 332 ~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
.+-+|+++.+|+|+++..+|++|+.|+....||||+||||+++..|-....+++.+.+++..+|+.++|||....++-|+
T Consensus 241 rvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 241 RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred eehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999886665667788999999999999999999999999
Q ss_pred EeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 004921 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (723)
Q Consensus 412 aaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 491 (723)
.+||+|+.|||+|+||||+|+.++|.+||.+.|..||+.|.+.+....++-++-||+.+++-+|++|+.+|.+|.+.|.+
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCccc
Q 004921 492 RDLKEISKDEISDALERIIAGPEKKN 517 (723)
Q Consensus 492 ~~~~~I~~edl~~Al~~~~~g~~~~~ 517 (723)
..++..+..||.+|+++++.|-.+-+
T Consensus 401 arrk~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 401 ARRKVATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 99899999999999999998866543
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-44 Score=356.33 Aligned_cols=248 Identities=39% Similarity=0.724 Sum_probs=240.7
Q ss_pred CccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHh
Q 004921 265 GVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~ 343 (723)
..+++=|+|++...++++++++. .++|+.|..+|+..|+|+|||||||||||+||+++|....+.|+.+++++++.+|.
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 222 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence 35788899999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCcc
Q 004921 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (723)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 423 (723)
|++...+|++|-.|+.++|+|||+||||+++..|..+.++++++.+++..+||+++|||....++-||.+||+.+.|||+
T Consensus 223 gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 223 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 424 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 424 LlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
|+||||+|+.|+||+|+.+.|.+||+.|.++..+...+++..+|....|.||+++..+|.+|.++|.|+.+-.+|++||+
T Consensus 303 llrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfe 382 (404)
T KOG0728|consen 303 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 382 (404)
T ss_pred hcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHcC
Q 004921 504 DALERIIAG 512 (723)
Q Consensus 504 ~Al~~~~~g 512 (723)
-|+.+++..
T Consensus 383 mav~kvm~k 391 (404)
T KOG0728|consen 383 MAVAKVMQK 391 (404)
T ss_pred HHHHHHHhc
Confidence 999998753
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-44 Score=359.94 Aligned_cols=249 Identities=41% Similarity=0.715 Sum_probs=239.1
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.+.-.++||+|++...++|.+.+-. +.++++|.++|+++|+|+|+|||||||||++|||+|...+..|+.+.+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 4556899999999999999886655 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
|.|.+++.+|+.|..|+..+|+||||||+|+++.+|..+...++.+.+++..+||.++|||+++..|-||++||+.+.||
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999999988777888899999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ed 501 (723)
|+|+|+||+|+.|+||.|+.+.|.+|++.|.+++...+|+++++|++.|.+|+|++...+|.+|.+.|.|++...++.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 004921 502 ISDALERIIA 511 (723)
Q Consensus 502 l~~Al~~~~~ 511 (723)
+.+++..+..
T Consensus 405 fmegI~eVqa 414 (424)
T KOG0652|consen 405 FMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=365.14 Aligned_cols=251 Identities=39% Similarity=0.679 Sum_probs=242.8
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.+.-+|+||+|+++..+++++.|+. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4457999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
|.|++.+.+|++|..|..++|+|+||||||+++.+|-...+++..+.++++.+||+++|||.+++.|-||.|||+.+.||
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD 338 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccC
Confidence 99999999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ed 501 (723)
|+|+||||+|+.|+|++||...++.||+.|..++.+..+++++.+...-..+||+||..+|.+|.++|.|..+..++.+|
T Consensus 339 PaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~D 418 (440)
T KOG0726|consen 339 PALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMED 418 (440)
T ss_pred HhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 004921 502 ISDALERIIAGP 513 (723)
Q Consensus 502 l~~Al~~~~~g~ 513 (723)
|..|.++++...
T Consensus 419 F~ka~e~V~~~K 430 (440)
T KOG0726|consen 419 FKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHhc
Confidence 999999988643
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-43 Score=391.42 Aligned_cols=248 Identities=38% Similarity=0.715 Sum_probs=225.4
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
++-++++|+||+|++++|.++.+-++. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|+.+.+.++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 334679999999999999999999987 999998864 788788999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--CCCceEEEEeeCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GNSGVIVLAATNRP 417 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--~~~~ViVIaaTN~p 417 (723)
++|+|+++.++|++|++|+..+|||||+||+|+++++|+...+. .....+++.|||.+||++. ...+|+||+|||+|
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS-GGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS-GGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc-cccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999874332 2367899999999999998 46789999999999
Q ss_pred CCCCccccCCCCcccccccCCC-CHHHHHHHHHHHhcCCCCCccccHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhCC-
Q 004921 418 DVLDSALLRPGRFDRQVTVDRP-DVAGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDL- 494 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~P-d~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~-G~sgadL~~lv~~A~~~A~r~~~- 494 (723)
|.|||+|+||||||+.++++++ |.+.+..+|+...++..+++++|+.++|++++ .|||+|+-.+|.+|.+.|++|..
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 56778899999999999999999999999987 79999999999999999988721
Q ss_pred ----------------CCCCHHHHHHHHHHHH
Q 004921 495 ----------------KEISKDEISDALERII 510 (723)
Q Consensus 495 ----------------~~I~~edl~~Al~~~~ 510 (723)
-.++++||.+++++..
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 1367889999988764
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.5e-43 Score=350.27 Aligned_cols=239 Identities=36% Similarity=0.672 Sum_probs=222.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
.++++|+||+|++++|+..+-++.+|.+|+.|..+ .|++||||||||||||++|+|+|+++.+||+.+.+.++++.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 45789999999999999999999999999998654 588999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
+|+++.+++++|+.|++.+|||+||||+|+++-.|.-+.-. .....++|.||++|||+..+.||+.|++||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999998766432211 2356799999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHH-HHHHHHHHHHHHhCCCCCCHHH
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQ-NLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~-~lv~~A~~~A~r~~~~~I~~ed 501 (723)
++++ ||...|+|.+|+.++|.+|++.+++..++.-+.++..++..+.|+||+||. .++..|...|...++..|+.+|
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ed 347 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERED 347 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 9999 999999999999999999999999999999999999999999999999995 7888888999999999999999
Q ss_pred HHHHHHH
Q 004921 502 ISDALER 508 (723)
Q Consensus 502 l~~Al~~ 508 (723)
++.|+.+
T Consensus 348 ie~al~k 354 (368)
T COG1223 348 IEKALKK 354 (368)
T ss_pred HHHHHHh
Confidence 9999987
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=363.89 Aligned_cols=243 Identities=37% Similarity=0.626 Sum_probs=221.2
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.++++|+||+|++++|+-|+|.|-. +..|+.|+. ..++-+|||++||||||||+||||+|.||+..|+.++.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 5679999999999999999997776 899998874 33455899999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC-Cc---eEEEEeeCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN-SG---VIVLAATNRP 417 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~-~~---ViVIaaTN~p 417 (723)
|.|++++.+|-+|+.|+.++|++|||||||+|+.+|+.. +.++...++.++||.+|||.... ++ |+|+|+||.|
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999863 56778889999999999998653 23 8999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC---
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL--- 494 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~--- 494 (723)
+.||+||+| ||.+.|++|+|+.++|..+++..++...++++++++.|+..++||||+||.++|++|.+.+.|+..
T Consensus 363 WdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~ 440 (491)
T KOG0738|consen 363 WDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGL 440 (491)
T ss_pred cchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred --------------CCCCHHHHHHHHHHHH
Q 004921 495 --------------KEISKDEISDALERII 510 (723)
Q Consensus 495 --------------~~I~~edl~~Al~~~~ 510 (723)
..++..||++|+.++.
T Consensus 441 ~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 441 TPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred CcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 2366777777777653
No 20
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.3e-42 Score=353.45 Aligned_cols=212 Identities=45% Similarity=0.790 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhcccc
Q 004921 498 SKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLY 577 (723)
Q Consensus 498 ~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~ 577 (723)
|++||++|+++++.|++++...+++++++++|+||+|||+++++++..++|.++||+|||.++||+.+.|.+++. ..
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~---~~ 77 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRY---IR 77 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-S---S-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcc---cc
Confidence 578999999999999998777889999999999999999999999988999999999999999999999877643 47
Q ss_pred CHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCC-CCCCCcccccccc
Q 004921 578 SRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGG-NPFLGQQMSSQKD 656 (723)
Q Consensus 578 t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~-~~~lg~~~~~~~~ 656 (723)
||.+++++|+++|||||||+++||.+++|+|+++||++||+||+.||.+||||+++|++++..... ..|++.......+
T Consensus 78 t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 157 (213)
T PF01434_consen 78 TRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRP 157 (213)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEES
T ss_pred cHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCC
Confidence 999999999999999999999999888999999999999999999999999999999998865333 4567666656678
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 004921 657 YSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 712 (723)
Q Consensus 657 ~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~i 712 (723)
+|+.+...+|++|+++|+++|++|++||++||+.|++||++|+++++|+++||++|
T Consensus 158 ~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 158 MSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999986
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=370.84 Aligned_cols=251 Identities=37% Similarity=0.644 Sum_probs=236.7
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..+.++|+||+|++.+|++|++.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45679999999999999999999885 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.|.|.+...++++|..|+..+||||||||+|.++.+|.....+.+....+++.+|+.+||++....+++||++||+++.|
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998775544445567778999999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~e 500 (723)
|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..++||||+||.++|++|.+.|.+++...|+.+
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~ 377 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPK 377 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 004921 501 EISDALERIIAG 512 (723)
Q Consensus 501 dl~~Al~~~~~g 512 (723)
||.+|+.++..+
T Consensus 378 df~~A~~~v~~~ 389 (398)
T PTZ00454 378 DFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=359.97 Aligned_cols=255 Identities=46% Similarity=0.771 Sum_probs=238.2
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...+.++|+||+|+++++++|++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 345678999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
..|.|.+...++.+|..++..+||||||||+|.++.++......+..+..+++.+++.+++++....+++||+|||+++.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999887665445556778889999999999988889999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ 499 (723)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..|.||+|+||..+|++|.+.|.+++...|+.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~ 362 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTM 362 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHcCCCc
Q 004921 500 DEISDALERIIAGPEK 515 (723)
Q Consensus 500 edl~~Al~~~~~g~~~ 515 (723)
+||.+|++++......
T Consensus 363 ~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 363 EDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999998765443
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=361.71 Aligned_cols=229 Identities=44% Similarity=0.733 Sum_probs=218.0
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...++++|+||+|+.++|+.|++++.+ -+.|..|.+.+.+.+.|+|||||||||||+||.++|..++..|+.+.+.++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 445679999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
++|.|.++..+|++|.+|+..+|||||+||+|+++++|+.... ....+++||||++|||.+.-.||.|+|+|.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT---GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST---GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC---CchHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999986433 3467899999999999999999999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
|||||+||||+|+.++.++|+..+|.+|++........+.++|++.+|.+|.||||+||..++-.|.+.|..+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999999999888765
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=358.58 Aligned_cols=251 Identities=39% Similarity=0.693 Sum_probs=236.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..+.++|+||+|+++++++|++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 34568999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.|.|.+...++.+|..|+...||||||||||.++.+|.....++..+...++.+||.++|++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876555556667788899999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~e 500 (723)
|++++||||||+.|+|++||.++|.+||+.|+.+..+..++++..++..+.|+||+||.++|++|++.|.++++..|+.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 004921 501 EISDALERIIAG 512 (723)
Q Consensus 501 dl~~Al~~~~~g 512 (723)
||..|+++++..
T Consensus 416 D~~~A~~~v~~~ 427 (438)
T PTZ00361 416 DFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHhh
Confidence 999999998653
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=360.78 Aligned_cols=246 Identities=48% Similarity=0.784 Sum_probs=229.9
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...+.++|+|++|++.+|+.+++.+.+ ++.++.|...+.++|+|+|||||||||||+||+++|.+++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 456679999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
++|+|+++++++.+|..|+..+||||||||+|++.+.|+... +....+++++||.+|++.....+|+||+|||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 999999999999999999999999999999999999886532 22236899999999999999999999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCC
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA--LAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD-LKE 496 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-~~~ 496 (723)
+|++++||||||+.+++++||.++|.+||+.|+++.. +..++++..+++.+.||+|+||..+|++|.+.+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999998544 4678999999999999999999999999999999988 678
Q ss_pred CCHHHHHHHHHHH
Q 004921 497 ISKDEISDALERI 509 (723)
Q Consensus 497 I~~edl~~Al~~~ 509 (723)
++.+|+.+|+.++
T Consensus 471 ~~~~~~~~a~~~~ 483 (494)
T COG0464 471 VTLDDFLDALKKI 483 (494)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999883
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=334.72 Aligned_cols=231 Identities=38% Similarity=0.614 Sum_probs=214.4
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhC-CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALG-AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g-~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.+..+.+.+++|+||+|+++++++|++.|.. ++.|+.|...+ .++|+|+|||||||||||++|+|+|+++|.+|+.++
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3445567789999999999999999998887 99999996333 467899999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc--eEEEE
Q 004921 335 ASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG--VIVLA 412 (723)
Q Consensus 335 ~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~--ViVIa 412 (723)
.+.+.++|.|++++.++.+|..|.+..||||||||+|.+...|+ .+.++....+-++|+...||+..+.+ |+|+|
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998884 35677888899999999999987665 99999
Q ss_pred eeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 413 ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 413 aTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
|||+|..||.|++| |+.+++++++|+.++|.+||+..+++..+.+++|+..+|..|.||||.||.++|..|++..++.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999888775
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.2e-38 Score=372.74 Aligned_cols=246 Identities=45% Similarity=0.773 Sum_probs=227.9
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.+.++|+||+|++.+|++|++.+.+ +++++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 3568999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
|+|+++..++.+|..|+..+||||||||||.+++.|+... .......++++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998876432 23356789999999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--------
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD-------- 493 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-------- 493 (723)
++++||||||+.|++++||.++|.+||+.+.++..+..++|+..+|+.|+||||+||.++|++|++.|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988852
Q ss_pred ----------CCCCCHHHHHHHHHHHH
Q 004921 494 ----------LKEISKDEISDALERII 510 (723)
Q Consensus 494 ----------~~~I~~edl~~Al~~~~ 510 (723)
...|+.+||.+|+.++.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcC
Confidence 12588899999988753
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=326.72 Aligned_cols=226 Identities=37% Similarity=0.642 Sum_probs=205.6
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
..+++++|+||+|++.+|+.|+|.|-. ++.|+.|.. +-.+-+|+||||||||||++||+|+|.|++..|+.++.++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 567899999999999999999998776 899988863 233458999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-CCceEEEEeeCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPD 418 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-~~~ViVIaaTN~p~ 418 (723)
++|+|++++.++++|+.|+.++|+||||||||.++..|+. +.++...++..+||.+|+|... +.+|+|+++||-|+
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 9999999999999999999999999999999999988765 4566778899999999999854 56899999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCC-CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKAL-AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l-~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
.||.|++| ||++.|++|+|+...|..+++.|+...+. ..+.|+..|+++|+||||+||.-+|++|.+...|+
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999 99999999999999999999999987654 35678999999999999999999999998887765
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.9e-37 Score=336.19 Aligned_cols=249 Identities=46% Similarity=0.780 Sum_probs=232.5
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...+.++|+||+|+++++++|.+.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 345678999999999999999998876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
..+.|.+...++.+|..++...|+||||||+|.++.++.....++..+.+..+.+++.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877654445566777889999999999887788999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ 499 (723)
+|++++||||||+.|+++.|+.++|.+||+.++++..+..++++..+++.+.||+|+||.++|++|...|.+++...|+.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~ 353 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTM 353 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004921 500 DEISDALERI 509 (723)
Q Consensus 500 edl~~Al~~~ 509 (723)
+||.+|++++
T Consensus 354 ~d~~~a~~~~ 363 (364)
T TIGR01242 354 DDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3e-37 Score=347.04 Aligned_cols=245 Identities=30% Similarity=0.466 Sum_probs=215.4
Q ss_pred cccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
+...+..+|+||+|++.+|++|++....+ +..+..+|...|+|+|||||||||||++|+++|++++.||+.++++.+.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 33446789999999999999998865543 2345677999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
+.|+|+++.+++++|..|+..+||||||||||.++.++.. .+.+....+++++|+..|+. ...+|+||+|||+++.
T Consensus 297 ~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~--~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 297 GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES--KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDL 372 (489)
T ss_pred ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC--CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhh
Confidence 9999999999999999999999999999999999875433 12344567889999999984 4567999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCC--CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKAL--AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l--~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 497 (723)
||++++|+||||+.+++++|+.++|.+||+.|+++... ..+.++..+++.|.||||+||+++|++|...|..++ +.+
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~l 451 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REF 451 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCc
Confidence 99999999999999999999999999999999987643 247889999999999999999999999998887765 679
Q ss_pred CHHHHHHHHHHHHc
Q 004921 498 SKDEISDALERIIA 511 (723)
Q Consensus 498 ~~edl~~Al~~~~~ 511 (723)
+.+|+..|+.++..
T Consensus 452 t~~dl~~a~~~~~P 465 (489)
T CHL00195 452 TTDDILLALKQFIP 465 (489)
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999987653
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=322.58 Aligned_cols=247 Identities=40% Similarity=0.686 Sum_probs=234.7
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
.+++|+++.|.-++..++++.+.. +.+|+.|...|+++|+|++||||||||||++|+++|...|+.|+.++.+++.+.|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 357999999999999999998886 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
.|++++.+|+.|+.|+...|||||+||||+++.++.+.....+.+.+.++-.|+.+||++.....|-+|.|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999988665556677889999999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
+|+||||+|+.+++|+|+...|..|++.|...+.....+|.+.+.+..+||+|+|+++.|.+|...|.+.....+-.+++
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999998888999999
Q ss_pred HHHHHHHH
Q 004921 503 SDALERII 510 (723)
Q Consensus 503 ~~Al~~~~ 510 (723)
..++.++.
T Consensus 367 ~k~vrk~~ 374 (388)
T KOG0651|consen 367 MKLVRKQA 374 (388)
T ss_pred HHHHHHHH
Confidence 98887754
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.2e-34 Score=321.31 Aligned_cols=249 Identities=32% Similarity=0.559 Sum_probs=204.7
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc----------e
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP----------F 330 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p----------~ 330 (723)
..++++|+||+|+++.++++++.+.. +.+++.|..+|.++|+|+|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 45678999999999999999998876 899999999999999999999999999999999999998654 6
Q ss_pred eeechhhHHHHHhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 004921 331 FSCAASEFVELFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (723)
Q Consensus 331 i~is~s~~~~~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~ 406 (723)
+.++++++...|.|+++..++.+|+.++.. .||||||||+|.++.+|+.+ ..++....++++||.+||++...+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhcccccCC
Confidence 677788899999999999999999998864 69999999999999887642 223445678899999999999888
Q ss_pred ceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC-CCCCc---------cccHHHHHhh-------
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-KALAK---------DVDFEKISRR------- 469 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~-~~l~~---------d~dl~~La~~------- 469 (723)
+++||+|||+++.||++++||||||++|+|++|+.++|.+||+.++.. .++.. ..+...+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999864 23311 1112222211
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcC
Q 004921 470 ----------------------TPGFTGADLQNLMNEAAILAARR----DLKEISKDEISDALERIIAG 512 (723)
Q Consensus 470 ----------------------t~G~sgadL~~lv~~A~~~A~r~----~~~~I~~edl~~Al~~~~~g 512 (723)
+..+||++|.++|.+|...|.++ +...++.+|+..|+..-...
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 34577888888888887777655 23467778888877765543
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-33 Score=310.47 Aligned_cols=237 Identities=43% Similarity=0.671 Sum_probs=221.8
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
..++ .+++|.......+++.+.+ +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4567 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCC-CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 343 VGVGASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~a-P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
.|++++.+|..|+.|.+.+ |++|||||+|+++++|.... ....++..+|+..||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 99999999999999886532 246789999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ed 501 (723)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..++..++||.|+||..+|.+|.+.+.++ +.++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999998887 7778
Q ss_pred HHHHHHHHHc
Q 004921 502 ISDALERIIA 511 (723)
Q Consensus 502 l~~Al~~~~~ 511 (723)
+..|+..+..
T Consensus 409 ~~~A~~~i~p 418 (693)
T KOG0730|consen 409 FQEALMGIRP 418 (693)
T ss_pred HHHHHhcCCc
Confidence 8887766543
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=2.5e-32 Score=290.19 Aligned_cols=260 Identities=19% Similarity=0.243 Sum_probs=201.4
Q ss_pred Ccccccc-ccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 265 GVTFADV-AGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 265 ~~~f~dv-~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
.-+|+++ .|+--.+.-+..++.. -|+- ....|.++|++++||||||||||++|+++|+++|++|+.++++++.+.|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3567887 6666666666665543 2221 1236789999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHH-HHHHHhhcCC------------CC
Q 004921 343 VGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTI-NQLLTEMDGF------------SG 404 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~l-n~LL~~ld~~------------~~ 404 (723)
+|++++.+|++|..|+. .+||||||||||+++++++.. +.....+.+ .+||++||+. ..
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 99999999999999975 579999999999999988632 222233444 7999998863 34
Q ss_pred CCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCC----CCHHHHHH
Q 004921 405 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG----FTGADLQN 480 (723)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G----~sgadL~~ 480 (723)
..+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..++ ..|+..|+..++| |.|+--..
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar 342 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRAR 342 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHH
Confidence 567999999999999999999999999976 4799999999999999998775 5789999999987 56777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhh
Q 004921 481 LMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGA 540 (723)
Q Consensus 481 lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~ 540 (723)
+..++...-+.+ +..+.+- ++++...+ ....+......+...-|.||.++..
T Consensus 343 ~yd~~v~~~i~~----~g~~~~~---~~l~~~~~-~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 343 VYDDEVRKWIAE----VGVENLG---KKLVNSKK-GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHH----hhHHHHH---HHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 777765443322 2333332 33343333 2345566667788899999998864
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-33 Score=299.50 Aligned_cols=249 Identities=34% Similarity=0.588 Sum_probs=212.9
Q ss_pred ccCCCcccccc--ccchHhHHH-HHH-HHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-ceeeech
Q 004921 261 VPETGVTFADV--AGADQAKLE-LQE-VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-PFFSCAA 335 (723)
Q Consensus 261 ~~~~~~~f~dv--~G~~~~k~~-L~e-iv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-p~i~is~ 335 (723)
+-.+.-.|+++ +|++.--.. .++ +....-.|+.-.++|++.-+|+|||||||||||++||.|.+-++. +--.+++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 44567788884 566544332 333 333467889999999999999999999999999999999998854 4566899
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHc--------CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc
Q 004921 336 SEFVELFVGVGASRVRDLFEKAKS--------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG 407 (723)
Q Consensus 336 s~~~~~~~G~~~~~vr~lF~~A~~--------~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ 407 (723)
.+.+++|+|+++.++|++|..|.. ..-.||++||||+++.+|++.. ++.....+++||||..|||...-++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999999864 1225999999999999998743 3455678899999999999999999
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC----CCCccccHHHHHhhCCCCCHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----ALAKDVDFEKISRRTPGFTGADLQNLMN 483 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~----~l~~d~dl~~La~~t~G~sgadL~~lv~ 483 (723)
++||+-||+.+.||+||+|||||..++++.+||++.|.+|++.|.+++ .+..|+|+.+||..|.+|||++|+.+|+
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999998654 4678999999999999999999999999
Q ss_pred HHHHHHHHhCC---------------CCCCHHHHHHHHHHHH
Q 004921 484 EAAILAARRDL---------------KEISKDEISDALERII 510 (723)
Q Consensus 484 ~A~~~A~r~~~---------------~~I~~edl~~Al~~~~ 510 (723)
.|...|..|.- -.|+.+||..|++.+.
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 99988887632 2478899999999654
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.2e-32 Score=316.01 Aligned_cols=248 Identities=36% Similarity=0.622 Sum_probs=220.0
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechh
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAAS 336 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s 336 (723)
...+.|++|+|++.++.+|+|.|.+ |..|+.|..+++.+|+|+|++||||||||+.|+++|..+ .+.|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4568999999999999999999987 999999999999999999999999999999999999987 4678888889
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
+..++|+|+.+..++.+|+.|++..|+|||+||||.+++.|+.. .......++..||..|||+...+.|+||+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 99999999999999999999999999999999999999988652 233456789999999999999999999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 495 (723)
|+.+||+|+||||||+.++|++|+.+.|.+|+..|.++-.-. ...-+..||..+.||-|+||+.+|.+|++.+.++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999998664421 1223588999999999999999999999999887432
Q ss_pred ----------------CCCHHHHHHHHHHHHcCC
Q 004921 496 ----------------EISKDEISDALERIIAGP 513 (723)
Q Consensus 496 ----------------~I~~edl~~Al~~~~~g~ 513 (723)
.+...||..|+.++....
T Consensus 496 q~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred eeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 356677788877766543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=6.1e-31 Score=312.98 Aligned_cols=245 Identities=45% Similarity=0.760 Sum_probs=223.0
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
+.++|+||+|++++++.+++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+++.++++++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568999999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
.|.....++.+|+.+....|+||||||+|.+.++++.. .......++++|+..|+++.....++||++||+++.||+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~---~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV---TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC---cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 99999999999999999999999999999999876542 123346788999999999988889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC--------
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL-------- 494 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~-------- 494 (723)
+++|+|||++.+.++.|+.++|.+||+.+.++..+..+.++..++..++||+++|+..++++|+..+.++..
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999998888889999999999999999999999999988876521
Q ss_pred -----------CCCCHHHHHHHHHHHHc
Q 004921 495 -----------KEISKDEISDALERIIA 511 (723)
Q Consensus 495 -----------~~I~~edl~~Al~~~~~ 511 (723)
..++.+|+..|+..+..
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhccc
Confidence 24677899988876543
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=280.75 Aligned_cols=224 Identities=36% Similarity=0.576 Sum_probs=198.7
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
...+.|+|++|++.+|+.+.+.+-+ +..++.|..+. .+++|+||.||||+|||+|++|+|.|++..|+.++++.+.++
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3458999999999999999999988 66688876442 345899999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC--CCceEEEEeeCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--NSGVIVLAATNRPDV 419 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~--~~~ViVIaaTN~p~~ 419 (723)
|+|++++.++.+|.-|+...|+|+||||+|.++.+|.. +.++...+...++|.++++... ++.|+||+|||+|+.
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e 302 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE 302 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH
Confidence 99999999999999999999999999999999998843 4556667888899998887744 457999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-CCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
+|.+++| ||.+++++|+|+.+.|..+|+..+... ....+.|+..+++.|+|||+.||.++|.+|++--.+.
T Consensus 303 ~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 303 LDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred HHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 9999999 999999999999999999999888765 3345678999999999999999999999998655443
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.6e-22 Score=213.26 Aligned_cols=206 Identities=27% Similarity=0.354 Sum_probs=163.5
Q ss_pred ccccccccchHhHHHHHH-HHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 266 VTFADVAGADQAKLELQE-VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~e-iv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
-+|+.|+=-.+.|++|.+ +.+|++..+.|++.|...-||.|||||||||||++..|+|++++..++.++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 789999988999988775 667899999999999999999999999999999999999999999999888765432
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCC---CCC-hHHHHHHHHHHHhhcCCCCCC--ceEEEEeeCCCC
Q 004921 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG---GGN-DEREQTINQLLTEMDGFSGNS--GVIVLAATNRPD 418 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~---~~~-~~~~~~ln~LL~~ld~~~~~~--~ViVIaaTN~p~ 418 (723)
.. .++.++..+... +||+|++||+-..-+..... +.. ....-++..||+.+||+.+.+ .-|+|.|||+++
T Consensus 274 -n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 277777776554 69999999997653322111 111 123468999999999998877 589999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCC--CCHHHHHHH
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG--FTGADLQNL 481 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G--~sgadL~~l 481 (723)
.|||||+||||+|.+|+++..+...-+.+++.++.... +..-+.++.+...+ .||||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999986532 11123444443333 699998544
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=5.2e-21 Score=203.41 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=162.8
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCc---ceEEeCCCCCcHHHHHHHHHHhc-------CCceeeechhhH
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK---GCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAASEF 338 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~---gvLL~GPpGtGKT~LAralA~e~-------~~p~i~is~s~~ 338 (723)
++++|++.+|+++++++.++..+..+.+.|...|. ++||+||||||||++|+++|+.+ ..+++.++.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 48999999999999999987777777778877653 48999999999999999999875 237999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
...+.|..+..++.+|+.+. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999988888888888874 36999999999965322 2334567888899988853 35577888776432
Q ss_pred -----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHh----h--CCCC-CHHHHHHHHHH
Q 004921 419 -----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA--LAKDVDFEKISR----R--TPGF-TGADLQNLMNE 484 (723)
Q Consensus 419 -----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~--l~~d~dl~~La~----~--t~G~-sgadL~~lv~~ 484 (723)
.++|+|.+ ||+.+|.|++++.+++.+|++.++++.. +.++. ...+.. . ...+ +++++++++..
T Consensus 173 ~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 173 MDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34699999 9999999999999999999999986543 33322 222222 1 1233 48999999999
Q ss_pred HHHHHHHh
Q 004921 485 AAILAARR 492 (723)
Q Consensus 485 A~~~A~r~ 492 (723)
+....+.|
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 87665544
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-21 Score=201.66 Aligned_cols=233 Identities=23% Similarity=0.336 Sum_probs=175.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
.-.|++|+-....+..|+++...-.|.+..+ .+-+++|||||||||||++|+-||...|..+-.+.+.+..-. -.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-ch
Confidence 3459999999999999999888766654422 445789999999999999999999999999888887765431 23
Q ss_pred hhhhHHHHHHHHHHcCC-CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCcc
Q 004921 345 VGASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~a-P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 423 (723)
.+...+.++|+-+++.. .-+|||||.|++.-.|... .-++.....+|.||-.-- .....++++.+||+|..+|.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHH
Confidence 45567899999998744 4689999999998777542 223455678888886543 334568889999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC------------------------c---cccHHHHHhhCCCCCHH
Q 004921 424 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA------------------------K---DVDFEKISRRTPGFTGA 476 (723)
Q Consensus 424 LlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~------------------------~---d~dl~~La~~t~G~sga 476 (723)
+-. |||..++||+|..++|.++|+.|+.+.... . +.-+.+.|++|+||||+
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 999 999999999999999999999887432210 0 01147788999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 477 DLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 477 dL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
+|..|+---...+.-...-.++...+++.++.
T Consensus 580 EiakLva~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 580 EIAKLVASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 99999875433333333334455555555443
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=5.3e-21 Score=203.25 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=166.6
Q ss_pred cc-ccccchHhHHHHHHHHHHhcCchhhhhhCCCC--C-cceEEeCCCCCcHHHHHHHHHHhcC-------Cceeeechh
Q 004921 268 FA-DVAGADQAKLELQEVVDFLKNPDKYTALGAKI--P-KGCLLVGPPGTGKTLLARAVAGEAG-------VPFFSCAAS 336 (723)
Q Consensus 268 f~-dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~--p-~gvLL~GPpGtGKT~LAralA~e~~-------~p~i~is~s 336 (723)
++ +++|++++|+++.+++.++..++.+.+.|... | .++||+||||||||++|+++|+.+. .+|+.++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888888775 3 3899999999999999999988762 379999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
++...+.|.+...++.+|+++.. ++|||||+|.+.+.+. ..+.....++.|+..|+.. ..+++||++++.
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~ 169 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYK 169 (284)
T ss_pred HHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99988999888888999988743 6999999999864322 2334566788899998843 356788888764
Q ss_pred C--C---CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHhh-------CCCCCHHHHHHHHH
Q 004921 417 P--D---VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRR-------TPGFTGADLQNLMN 483 (723)
Q Consensus 417 p--~---~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~-dl~~La~~-------t~G~sgadL~~lv~ 483 (723)
. + .++|+|.+ ||+..|+||+++.+++..|++.++++....-+. ....+... .+-.+++++++++.
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAID 247 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3 2 25899999 999999999999999999999998764322111 12333333 33347999999999
Q ss_pred HHHHHHHHh
Q 004921 484 EAAILAARR 492 (723)
Q Consensus 484 ~A~~~A~r~ 492 (723)
.+....+.+
T Consensus 248 ~~~~~~~~r 256 (284)
T TIGR02880 248 RARLRQANR 256 (284)
T ss_pred HHHHHHHHH
Confidence 998766654
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.3e-20 Score=198.00 Aligned_cols=212 Identities=21% Similarity=0.317 Sum_probs=160.2
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCC---cceEEeCCCCCcHHHHHHHHHHhc-------CCceeeechh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIP---KGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAAS 336 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p---~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~is~s 336 (723)
.+++++|++++|+.+++++.+..........|...+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478899999999999999998665555556676643 368999999999999999999864 3478899999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 337 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
++...+.|.....++++|+.+. ++||||||+|.+... +........++.|+..|+.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 469999999999631 12233456788899988864 344566655543
Q ss_pred CC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCC--CccccHHHHHhh---------CCCCCHHHHHH
Q 004921 417 PD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKAL--AKDVDFEKISRR---------TPGFTGADLQN 480 (723)
Q Consensus 417 p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l--~~d~dl~~La~~---------t~G~sgadL~~ 480 (723)
.+ .++|++++ ||+..|.|+.++.+++.+|++.+++.... +++. +..++.. ....+++.+.|
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 22 37889998 99999999999999999999988875433 2221 2333211 11247899999
Q ss_pred HHHHHHHHHHHh
Q 004921 481 LMNEAAILAARR 492 (723)
Q Consensus 481 lv~~A~~~A~r~ 492 (723)
++..|....+.+
T Consensus 230 ~~e~a~~~~~~r 241 (261)
T TIGR02881 230 IIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999987665544
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=5.8e-21 Score=177.92 Aligned_cols=130 Identities=46% Similarity=0.737 Sum_probs=117.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCC-CeEEEEcCccchhhhcCCCCCC
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKA-PCIVFIDEIDAVGRQRGAGLGG 383 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~a-P~ILfIDEiD~l~~~r~~~~~~ 383 (723)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....++++|.+++... ||||||||+|.+..+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999998761 23
Q ss_pred CChHHHHHHHHHHHhhcCCCCC-CceEEEEeeCCCCCCCccccCCCCcccccccCC
Q 004921 384 GNDEREQTINQLLTEMDGFSGN-SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 384 ~~~~~~~~ln~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~ 438 (723)
.+......++.|+..++..... .+++||++||.++.++++++| +||+..|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5667788999999999988765 569999999999999999998 89999999874
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.7e-19 Score=182.89 Aligned_cols=237 Identities=22% Similarity=0.239 Sum_probs=173.0
Q ss_pred ccccccchHhHHHHHHHHHH-hcCchhhhh-hCCCCCcceEEeCCCCCcHHHHHHHHHHhcC---------Cceeeechh
Q 004921 268 FADVAGADQAKLELQEVVDF-LKNPDKYTA-LGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAAS 336 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~-~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---------~p~i~is~s 336 (723)
|+.++=-.++|+.|...+.. +.-.++-.. -=+...|-+||+||||||||+|+||+|..+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 44555455677777665543 332221111 0122346699999999999999999999763 467899999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCC-CCCCCChHHHHHHHHHHHhhcCCCCCCceEE
Q 004921 337 EFVELFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGA-GLGGGNDEREQTINQLLTEMDGFSGNSGVIV 410 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~-~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViV 410 (723)
.+.++|.+++.+.+..+|++... ..--.++|||+++++..|.. ..++.....-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 99999999999999999999764 22235789999999987743 3344455677899999999999999999999
Q ss_pred EEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC-----CCCC--------ccc-----cHHHHHhh-CC
Q 004921 411 LAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-----KALA--------KDV-----DFEKISRR-TP 471 (723)
Q Consensus 411 IaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~-----~~l~--------~d~-----dl~~La~~-t~ 471 (723)
++|+|-.+.||.|+.. |-|-+.++++|+...|.+|++..+.. +-+. ..+ ....+... +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 99999999999999999999976532 1111 111 12223333 57
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 472 GFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 472 G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
|.||+-|+.+=--|... --....++.+++..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHh--ccCCCccChHHHHHHHHH
Confidence 99999998876554322 222346888888777643
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=2.1e-18 Score=173.80 Aligned_cols=190 Identities=27% Similarity=0.366 Sum_probs=128.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHh
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~ 343 (723)
.+.+|+|++|++++++.++-++...+... ....++|||||||+|||+||+.+|++++.+|..+++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 34689999999999999988777643211 22457999999999999999999999999999998754321
Q ss_pred hhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----CC-----------Cc
Q 004921 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----GN-----------SG 407 (723)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~~-----------~~ 407 (723)
...+..++.... ...||||||||.+-+. ....|+..|+.+. +. .+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 122333444433 3469999999999432 3445666665442 11 24
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
+.+|+||++...|.+.|+. ||.....+..++.++..+|++...+...+.-+ ....++|+++.| +|+-..++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 7899999999999999999 99999999999999999999977665555422 236889999987 999888887765
No 47
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.5e-18 Score=191.48 Aligned_cols=222 Identities=26% Similarity=0.433 Sum_probs=179.5
Q ss_pred HHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCC
Q 004921 283 EVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAP 362 (723)
Q Consensus 283 eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP 362 (723)
++++.+.-+..-...+...-..+||+|+||||||++++++|.++|.+++.++|.++.....+..+.++..+|.+|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 45555544333233344455579999999999999999999999999999999999988888889999999999999999
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCH
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~ 441 (723)
+|||+-++|.++..+.. +.+-...+.++.++. .|.+. ...+++||++|+..+.|++.+++ -|-..|.++.|+.
T Consensus 492 avifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse 565 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSE 565 (953)
T ss_pred eEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCH
Confidence 99999999999844322 333344556666666 34333 56789999999999999999998 7778999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHH---HHhC-----------------CCCCCHHH
Q 004921 442 AGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA---ARRD-----------------LKEISKDE 501 (723)
Q Consensus 442 ~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A---~r~~-----------------~~~I~~ed 501 (723)
++|.+||+.++....+..++.+..++++|.||+.+++..++..+-..+ ..+. ...++++|
T Consensus 566 ~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ed 645 (953)
T KOG0736|consen 566 EQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEED 645 (953)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHH
Confidence 999999999999999999999999999999999999999887762211 1111 14588999
Q ss_pred HHHHHHHHH
Q 004921 502 ISDALERII 510 (723)
Q Consensus 502 l~~Al~~~~ 510 (723)
|..++.+..
T Consensus 646 f~kals~~~ 654 (953)
T KOG0736|consen 646 FDKALSRLQ 654 (953)
T ss_pred HHHHHHHHH
Confidence 999998754
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=8.1e-18 Score=182.68 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=160.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
..+.+|+|++|+++.++.|..++...+.+ ...+.++||+||||||||++|+++|++++..+...++..+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--
Confidence 34568999999999999998888654322 135678999999999999999999999999888776653321
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCC
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------------GNS 406 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----------------~~~ 406 (723)
...+..++... ..++||||||||.+... .... |...|+... .-.
T Consensus 90 ----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 90 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ----hHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHH---HHHHHHhcceeeeeccCccccceeecCC
Confidence 12233444433 34689999999998431 1122 223333221 113
Q ss_pred ceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
++.+|++||++..++++|++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.| +++.+.++++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 999999999999999999999887654443 22236788888887 789999999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 486 AILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 486 ~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
...+..++...|+.+++..+++..
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 877777666789999999998654
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.1e-17 Score=186.68 Aligned_cols=219 Identities=46% Similarity=0.743 Sum_probs=197.6
Q ss_pred hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEE
Q 004921 288 LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFI 367 (723)
Q Consensus 288 l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfI 367 (723)
+..++.+..++..+|++++++||||||||+++++++.+ +.+++.+++.+....+.|..+.+.+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 77668889999999999999999999999999999999999
Q ss_pred cCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHH
Q 004921 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKI 447 (723)
Q Consensus 368 DEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~I 447 (723)
||+|.+.+.+.. ........++.+++..++++.... +++++.||++..+|+++++||||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988765 334456778999999999999444 8899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHc
Q 004921 448 LQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD------LKEISKDEISDALERIIA 511 (723)
Q Consensus 448 l~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~------~~~I~~edl~~Al~~~~~ 511 (723)
++.+.....+..+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9999988888778899999999999999999999999998888875 234788999999988754
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=9.8e-18 Score=179.88 Aligned_cols=210 Identities=25% Similarity=0.317 Sum_probs=154.1
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVG 346 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~ 346 (723)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++...+++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998877653221 134567999999999999999999999998887766543211
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCCceEE
Q 004921 347 ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------------GNSGVIV 410 (723)
Q Consensus 347 ~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----------------~~~~ViV 410 (723)
...+...+... ..+.+|||||+|.+.+. ....|+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222223322 34679999999998532 1222333333221 1234789
Q ss_pred EEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 411 LAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 411 IaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
|++||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.+++..+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 998899999999999999999887643332 22336788888887 6788889999887777
Q ss_pred HHhCCCCCCHHHHHHHHHH
Q 004921 490 ARRDLKEISKDEISDALER 508 (723)
Q Consensus 490 ~r~~~~~I~~edl~~Al~~ 508 (723)
...+...++.+++..++..
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 6666677999999999877
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.9e-18 Score=188.54 Aligned_cols=232 Identities=20% Similarity=0.238 Sum_probs=176.3
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHHHHHhh
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVELFVG 344 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~~~~~G 344 (723)
.|++-...+|++..+ ..-.| ...+.++||+||+|||||.|++++++++ .+++..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 455555666655544 21112 2234579999999999999999999987 457778999988877677
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh-hcCC-CCCCceEEEEeeCCCCCCCc
Q 004921 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE-MDGF-SGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~-ld~~-~~~~~ViVIaaTN~p~~LD~ 422 (723)
...+.++.+|..|.+++|+||++|++|.++...+ ..++......+.++.++.+ +..+ ..+..+.||++.+....|+|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 7788899999999999999999999999987222 2233333444455555533 2222 33455799999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--C--CCCC
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--D--LKEI 497 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~--~--~~~I 497 (723)
.|.+|++|+.++.++.|+..+|.+||+..+++.... ..-|++-++..|+||...|+..++.+|...|... . .+.+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999888765432 1224555999999999999999999998877732 2 2368
Q ss_pred CHHHHHHHHHHHHc
Q 004921 498 SKDEISDALERIIA 511 (723)
Q Consensus 498 ~~edl~~Al~~~~~ 511 (723)
+.++|.+++...+.
T Consensus 637 tke~f~ksL~~F~P 650 (952)
T KOG0735|consen 637 TKELFEKSLKDFVP 650 (952)
T ss_pred hHHHHHHHHHhcCh
Confidence 99999999987543
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=9.2e-17 Score=164.68 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=166.7
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHh
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~ 343 (723)
.+.+|+|.+|++++|+.|+-++..-+.. .....++|||||||.|||+||+.+|+|.|+.+-..++.-+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 3568999999999999999888764432 234568999999999999999999999999999888765432
Q ss_pred hhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------C--------CCc
Q 004921 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------G--------NSG 407 (723)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~--------~~~ 407 (723)
...+-.++..... .+|||||||+.+.+. .+.+ |...|+.|. . -..
T Consensus 91 ---~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-----------vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ---PGDLAAILTNLEE--GDVLFIDEIHRLSPA-----------VEEV---LYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---hhhHHHHHhcCCc--CCeEEEehhhhcChh-----------HHHH---hhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1122233333332 379999999999542 1222 233454442 1 135
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQNLMNEAA 486 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~sgadL~~lv~~A~ 486 (723)
+.+|+||.+...|...|+. ||....++..++.++..+|+....+...+.-+ ....++|++..| +++-..+++++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 7899999999999999998 99999999999999999999987765554422 236789999997 9999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 487 ILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 487 ~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
-.|.-++...|+.+-...|+.....
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHhCc
Confidence 9998888899999988888887643
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=5.9e-17 Score=194.12 Aligned_cols=200 Identities=26% Similarity=0.333 Sum_probs=138.7
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH---------H
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV---------E 340 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~---------~ 340 (723)
++.|++++|+.+.+.+...+.. +......+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4889999999988876642211 111223699999999999999999999999999998765432 1
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC-----CC--------CCCc
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-----FS--------GNSG 407 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~-----~~--------~~~~ 407 (723)
.|.|....++.+.|..+....| ||||||||.+.+.... + ..+.|++.||. +. ..++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-----~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-----D-----PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-----C-----HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 3566667778888888876665 8999999999753211 1 24556665552 11 1246
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-----CCCCC------ccccHHHHHh-hCCCCCH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR-----GKALA------KDVDFEKISR-RTPGFTG 475 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~-----~~~l~------~d~dl~~La~-~t~G~sg 475 (723)
+++|+|||.++.|+++|++ ||+ .|.|+.|+.+++.+|++.++. ...+. .+..+..+++ .+.....
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 8999999999999999999 895 789999999999999987762 11221 1123444554 3334445
Q ss_pred HHHHHHHHHHHHHH
Q 004921 476 ADLQNLMNEAAILA 489 (723)
Q Consensus 476 adL~~lv~~A~~~A 489 (723)
++|+..+...+..+
T Consensus 541 R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 541 RNLERQIEKICRKA 554 (775)
T ss_pred hHHHHHHHHHHHHH
Confidence 66665555544433
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.1e-16 Score=171.31 Aligned_cols=204 Identities=28% Similarity=0.425 Sum_probs=141.8
Q ss_pred CccccccccchHhHHH---HHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLE---LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~---L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
+.+|+|++|+++...+ |++++.. ....+++||||||||||++|+.||+..+.+|..+|+.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----
Confidence 4689999999988643 4444432 1234699999999999999999999999999999973
Q ss_pred HhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC-C
Q 004921 342 FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN-R 416 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN-~ 416 (723)
-.+.+.+|++++.|++. ...|||||||+.+-.. .+..||-.|+ ++.+++|+||. .
T Consensus 83 --~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 83 --TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCCC
Confidence 34567899999999653 2479999999999443 2345666665 55677776654 4
Q ss_pred CC-CCCccccCCCCcccccccCCCCHHHHHHHHHHHh--cCCCCC------ccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 417 PD-VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS--RGKALA------KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 417 p~-~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l--~~~~l~------~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
|. .|.++|++ |. +++.+.+.+.++..++++..+ ....+. ++.-...++..+.| ..+-..|++..+..
T Consensus 143 PsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~~~ 218 (436)
T COG2256 143 PSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLLELAAL 218 (436)
T ss_pred CCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence 54 69999999 44 568999999999999998733 222332 22235667777776 44444455554433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 488 LAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 488 ~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
.+ +.+. .+..+++.+.+.+...
T Consensus 219 ~~-~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 219 SA-EPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred hc-CCCc-ccCHHHHHHHHhhhhh
Confidence 32 2222 4457888888776544
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.70 E-value=1.8e-16 Score=188.93 Aligned_cols=223 Identities=21% Similarity=0.314 Sum_probs=160.4
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeech
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~ 335 (723)
-++++++|.++....+ +..|.. +...++||+||||||||++++++|..+ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~---~~~L~~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERT---IQVLCR---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHH---HHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 4789999998776544 443322 224579999999999999999999987 677899998
Q ss_pred hhHH--HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 336 SEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 336 s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
+.+. ..|.|+.+.+++++|+.+....|+||||||+|.+.+.+... +++. ...+.|...+. ++.+.+|++
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~---~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSM---DASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccH---HHHHHHHHHHh----CCCeEEEEe
Confidence 8887 46889999999999999988789999999999998654321 1111 12334444443 467899999
Q ss_pred eCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC----CC-CccccHHHHHhhCCCC-----CHHHH
Q 004921 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----AL-AKDVDFEKISRRTPGF-----TGADL 478 (723)
Q Consensus 414 TN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~----~l-~~d~dl~~La~~t~G~-----sgadL 478 (723)
||..+ .+|++|.| ||. .|.++.|+.+++.+||+...... .+ -.+..+..++..+..| -|.-.
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 99743 47999999 996 79999999999999999655431 11 1233355566555544 24445
Q ss_pred HHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcC
Q 004921 479 QNLMNEAAILAARR----DLKEISKDEISDALERIIAG 512 (723)
Q Consensus 479 ~~lv~~A~~~A~r~----~~~~I~~edl~~Al~~~~~g 512 (723)
-.++.+|+.....+ ....++.+|+.+++.+...-
T Consensus 395 i~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred HHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCC
Confidence 67777776533322 23458999999999887543
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=5.4e-16 Score=178.21 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=147.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCcee
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFF 331 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i 331 (723)
...+.+|++++|++...+.|+..+ . ...+.++||+||||||||++|+++..++ +.+|+
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 345689999999999987776432 1 1235689999999999999999998642 46899
Q ss_pred eechhhH-------HHHHhhhhhh----------------HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHH
Q 004921 332 SCAASEF-------VELFVGVGAS----------------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDER 388 (723)
Q Consensus 332 ~is~s~~-------~~~~~G~~~~----------------~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~ 388 (723)
.++|... .+...+.... .-...+.++ ...+|||||||.+...
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~------------ 190 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPV------------ 190 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHH------------
Confidence 9987531 1111111000 001122222 3469999999998432
Q ss_pred HHHHHHHHHhhcCCC--------------------------CCCc-eEEEEeeCCCCCCCccccCCCCcccccccCCCCH
Q 004921 389 EQTINQLLTEMDGFS--------------------------GNSG-VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (723)
Q Consensus 389 ~~~ln~LL~~ld~~~--------------------------~~~~-ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~ 441 (723)
.++.||..|+... .... .++++||+.|+.|++++++ |+ ..+.+++++.
T Consensus 191 --~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~ 265 (531)
T TIGR02902 191 --QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLD 265 (531)
T ss_pred --HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCH
Confidence 4455555443210 0112 3455667789999999999 77 4788999999
Q ss_pred HHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 442 AGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 442 ~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
+++.+|++..+++..+. ++..++.++..++ +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 266 eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 266 EEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 99999999988765543 2223566666654 79999999999999888888788999999999753
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=5.9e-16 Score=183.08 Aligned_cols=223 Identities=22% Similarity=0.331 Sum_probs=156.7
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeechh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAAS 336 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~s 336 (723)
.++.++|.++....+.+++.. +.+.++||+||||||||++|+++|... +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 577899998776555544332 124568999999999999999999864 4555666665
Q ss_pred hHH--HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 337 EFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 337 ~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
.+. ..|.|..+.+++.+|+.+....++||||||||.+...+... ++......++..++ .+..+.||++|
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L-------~~g~i~vIgAT 322 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLL-------SSGKIRVIGST 322 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHH-------hCCCeEEEecC
Confidence 555 35788889999999999988888999999999998654321 11222222222222 25679999999
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccH-----HHHHhhC-----CCCCHHHHH
Q 004921 415 NRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF-----EKISRRT-----PGFTGADLQ 479 (723)
Q Consensus 415 N~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl-----~~La~~t-----~G~sgadL~ 479 (723)
|.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++++ ..++..+ .-+-|....
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 9875 47999999 996 7999999999999999977654443333332 2222222 234567888
Q ss_pred HHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcCC
Q 004921 480 NLMNEAAILAA----RRDLKEISKDEISDALERIIAGP 513 (723)
Q Consensus 480 ~lv~~A~~~A~----r~~~~~I~~edl~~Al~~~~~g~ 513 (723)
.++.+|+.... ......++.+|+.+.+.+...-+
T Consensus 400 dlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 89999875432 22334688999999988876543
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=167.87 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=148.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------eee-
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i~i- 333 (723)
...+.+|+||+|++.+...|+..+.. .+.+..+||+||||||||++|+++|+.+++.- ..+
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 34567999999999999887776642 13466799999999999999999999886521 111
Q ss_pred chhhHHHH----------HhhhhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVEL----------FVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~~----------~~G~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|..+... ....+...+|++.+.+. .....|+||||+|.+.. ..+|.||..|
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------~A~NALLKtL 145 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------QSFNALLKTL 145 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------HHHHHHHHHh
Confidence 11111100 01122345566655544 23456999999999832 3688889988
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++..+.++..+....+. .+..+..|++...| +.++.
T Consensus 146 EE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdA 219 (484)
T PRK14956 146 EE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDM 219 (484)
T ss_pred hc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHH
Confidence 74 44678889999999999999999 66 468888899888888888877654442 33346788888887 89999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.+++..+... ....|+.+++.+.+
T Consensus 220 L~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 9998876533 22357877776554
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=2.4e-15 Score=170.21 Aligned_cols=222 Identities=21% Similarity=0.344 Sum_probs=149.3
Q ss_pred CCccccccc-cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 264 TGVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 264 ~~~~f~dv~-G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
+..+|++.+ |.. -+.....+..+..++. ...++++||||||||||+|++++++++ +..++++++.+
T Consensus 117 ~~~tfd~fv~g~~-n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 117 PKYTFDNFVVGKS-NRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCcccccccCCC-cHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456899954 533 2222222222222221 223569999999999999999999987 56789999998
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
|...+..........-|..... .+.+|+|||+|.+..++ . ....|+..++........+||+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~---------~---~~~~l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE---------R---TQEEFFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH---------H---HHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 8776554332211222332222 46799999999985321 1 222333333333233345677666666
Q ss_pred CC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 004921 418 DV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (723)
Q Consensus 418 ~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 491 (723)
.. +++.+.+ ||. ..+.+.+|+.++|.+|++..++...+. ++..++.|+....| +.++|..+++.....+..
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 54 7788888 885 589999999999999999988654332 23337888888876 999999999988777655
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 004921 492 RDLKEISKDEISDALERII 510 (723)
Q Consensus 492 ~~~~~I~~edl~~Al~~~~ 510 (723)
.+ +.|+.+.+.+++....
T Consensus 333 ~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 333 TG-KPITLELAKEALKDLL 350 (450)
T ss_pred hC-CCCCHHHHHHHHHHhh
Confidence 44 6699999999998764
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-15 Score=173.62 Aligned_cols=207 Identities=19% Similarity=0.314 Sum_probs=146.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC------------c
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV------------P 329 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~------------p 329 (723)
++.+.+|+||+|++.+++.|++.+..- ++++.+||+||+|+|||++|+.+|+.+++ |
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 345679999999999999888776531 45678999999999999999999998876 1
Q ss_pred eeeec-hhh--------HHHH--HhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 330 FFSCA-ASE--------FVEL--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 330 ~i~is-~s~--------~~~~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
.-.+. |.. +++. -...+...+|++.+.+.. ....|+||||+|.|.. ...|.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~AaNA 143 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------HAFNA 143 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------HHHHH
Confidence 11111 111 1110 001234556776666542 3347999999999832 36789
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~ 473 (723)
||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.++..+....+..+ ..+..|++...|
T Consensus 144 LLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 144 MLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred HHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999884 44567899999999999999999 66 78999999999998888877755444322 235677888776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
+.++..+++..+... +...|+.+++.
T Consensus 218 s~RdALsLLdQaia~----~~~~It~~~V~ 243 (700)
T PRK12323 218 SMRDALSLTDQAIAY----SAGNVSEEAVR 243 (700)
T ss_pred CHHHHHHHHHHHHHh----ccCCcCHHHHH
Confidence 999999998876532 22345554443
No 61
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.65 E-value=4.6e-15 Score=165.72 Aligned_cols=222 Identities=23% Similarity=0.363 Sum_probs=148.3
Q ss_pred CCccccc-cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 264 TGVTFAD-VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 264 ~~~~f~d-v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
+..+|++ ++|.+.. .....+..+..++. ....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4568999 5564432 12222222222221 234569999999999999999999876 67899999988
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 338 FVELFVGVGA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 338 ~~~~~~G~~~-~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
|...+..... ..+..+.+..+ .+.+|+|||+|.+..+. . ....|+..++.....+..+||+++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~---~~~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------R---TQEEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------H---HHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 8765543221 12222222222 35799999999985321 1 22233333333322344566666666
Q ss_pred CCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 417 PDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 417 p~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
|.. +++.+++ ||. ..+.+++|+.++|.+|++..++...+. ++..+..|+....+ +.++|..+++.....+.
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 654 6688888 786 479999999999999999888655443 33346788888875 89999999999877765
Q ss_pred HhCCCCCCHHHHHHHHHHHHc
Q 004921 491 RRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 491 r~~~~~I~~edl~~Al~~~~~ 511 (723)
.. .+.|+.+.+.+++.....
T Consensus 320 ~~-~~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 320 LT-GKPITLELAKEALKDLLR 339 (405)
T ss_pred Hh-CCCCCHHHHHHHHHHhcc
Confidence 54 467999999999877643
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=3.4e-15 Score=170.29 Aligned_cols=211 Identities=22% Similarity=0.302 Sum_probs=148.0
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
|...+.+.+|+||+|++++++.|++++..+.+ ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 44556778999999999999999888765332 1347889999999999999999999999999999998875
Q ss_pred HHHHhhhhhhHHHHHHHHHHc------CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEE
Q 004921 339 VELFVGVGASRVRDLFEKAKS------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (723)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIa 412 (723)
... ..++.+...+.. ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|.
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEE
Confidence 421 122222222221 246799999999985421 11245566666652 2234666
Q ss_pred eeCCCCCCCc-cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 413 ATNRPDVLDS-ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 413 aTN~p~~LD~-aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
++|.+..+++ .+++ ....|.|+.|+..++..+++..+....+. ++..+..|+..+.| |++.+++.....+
T Consensus 136 i~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a- 207 (482)
T PRK04195 136 TANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA- 207 (482)
T ss_pred eccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh-
Confidence 7888888777 5554 34689999999999999999887654442 23346778877765 7777777665533
Q ss_pred HhCCCCCCHHHHHHHH
Q 004921 491 RRDLKEISKDEISDAL 506 (723)
Q Consensus 491 r~~~~~I~~edl~~Al 506 (723)
.+...++.+++....
T Consensus 208 -~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 -EGYGKLTLEDVKTLG 222 (482)
T ss_pred -cCCCCCcHHHHHHhh
Confidence 345668888876553
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.1e-15 Score=167.24 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=144.2
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC--------------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------------- 328 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------------- 328 (723)
..+.+|+|++|++++++.|+..+.. . +.|.++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~---~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK---N--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4567999999999998877765542 1 35678999999999999999999998764
Q ss_pred ----------ceeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 329 ----------PFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 329 ----------p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+.. ..++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHH
Confidence 233333221 1223445665555542 2346999999999842 25677
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~ 473 (723)
|+..++.. ...+++|++|+.+..+++++++ |+ ..+.|.+|+.++...+++..++...+. .+..+..|++.+.|
T Consensus 137 LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 88888743 3457777777788899999999 66 479999999999999998877543322 23346778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~ 507 (723)
+.+++.+.+..+... .+ ..|+.+++.+++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 677777777654432 12 3499999988764
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.63 E-value=2.5e-14 Score=157.28 Aligned_cols=221 Identities=19% Similarity=0.238 Sum_probs=150.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC---------Cceeeechh
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAAS 336 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---------~p~i~is~s 336 (723)
...++++|.++..++|...+..... ...+.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3456899998888777776654211 13456799999999999999999987652 578888875
Q ss_pred hHH----------HHHh--hh--------hhhHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 337 EFV----------ELFV--GV--------GASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 337 ~~~----------~~~~--G~--------~~~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
... +... |. .....+.+++... ...+.||+|||+|.+.... +..+..|
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhH
Confidence 322 1111 11 0122344555443 3457899999999996210 1255566
Q ss_pred HHhhcCC-CCCCceEEEEeeCCCC---CCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhcC----CCCCccccHH--
Q 004921 396 LTEMDGF-SGNSGVIVLAATNRPD---VLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFE-- 464 (723)
Q Consensus 396 L~~ld~~-~~~~~ViVIaaTN~p~---~LD~aLlrpgRfd-~~I~v~~Pd~~~R~~Il~~~l~~----~~l~~d~dl~-- 464 (723)
+...+.. ..+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++. ..+.++ .+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i 229 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG-VIPLC 229 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh-HHHHH
Confidence 6542211 2235788999999886 47888877 674 67999999999999999988752 112222 122
Q ss_pred -HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 465 -KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 465 -~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
.++..+.| ..+.+.++|..|...|..++...|+.+|+..|++.+
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 33444455 677888899999988988888899999999998876
No 65
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1e-14 Score=164.17 Aligned_cols=223 Identities=16% Similarity=0.262 Sum_probs=149.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
.+..+|++.+--+.-......+..+..++.. .++++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4567899976323333233333333333321 3469999999999999999999975 46789999998
Q ss_pred HHHHHhhhh-hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 338 FVELFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 338 ~~~~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
|...+.... ...+.. |.......+.+|+|||++.+..+. . +...|+..++.+......+|+++.+.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~---~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------G---VQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------H---HHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 877654322 122222 333333457899999999885321 1 12233333333333344566666666
Q ss_pred CCC---CCccccCCCCc--ccccccCCCCHHHHHHHHHHHhcC--CCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 417 PDV---LDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRG--KALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 417 p~~---LD~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l~~--~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
|.. +++.+.+ || ...+.+.+||.+.|.+|++..++. ..++++ .+..|++...| +.++|..+++.....+
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 664 5677887 66 457889999999999999988764 334333 37888888876 9999999999886666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHc
Q 004921 490 ARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 490 ~r~~~~~I~~edl~~Al~~~~~ 511 (723)
...+ ..|+.+...+++...+.
T Consensus 314 ~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 314 ETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHhC-CCCCHHHHHHHHHHHhc
Confidence 5554 67999999999987653
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7.6e-15 Score=169.45 Aligned_cols=196 Identities=21% Similarity=0.278 Sum_probs=141.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------eee-
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC- 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i~i- 333 (723)
++.+.+|+||+|++++++.|++.+.. .++++.+||+||+|||||++|+++|+.+++.- -.|
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 35567999999999999888776542 24567789999999999999999999886521 000
Q ss_pred chhhHHH----------HHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVE----------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|..+.+ .....+...++++++.+.. ....|+||||+|.|.. ...|.||+.|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHH
Confidence 1111110 0001233456777766542 2346999999999832 3578888888
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..++|+..++...+. ++..+..|++...| +.++.
T Consensus 144 EE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdA 217 (830)
T PRK07003 144 EE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDA 217 (830)
T ss_pred Hh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 34567899999999999999999 66 689999999999999998887655443 33346778888887 88998
Q ss_pred HHHHHHHHHH
Q 004921 479 QNLMNEAAIL 488 (723)
Q Consensus 479 ~~lv~~A~~~ 488 (723)
.+++..+..+
T Consensus 218 LsLLdQAia~ 227 (830)
T PRK07003 218 LSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHh
Confidence 8888877643
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.62 E-value=1.1e-14 Score=163.16 Aligned_cols=200 Identities=26% Similarity=0.406 Sum_probs=144.3
Q ss_pred CCccccccccchHhHHH---HHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 264 TGVTFADVAGADQAKLE---LQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~---L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
.+.+|+|++|++++... |.+++. . ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 34689999999998665 555553 2 123479999999999999999999999999999987532
Q ss_pred HHhhhhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 341 LFVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
+...++.+++.+. .....||||||+|.+.. ...+.|+..++. ..+++|++|+.
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCC
Confidence 2334556666653 23568999999998843 134556666652 44666766543
Q ss_pred --CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-----CCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 417 --PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-----ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 417 --p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-----~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
...+++++++ |+ ..+.+++++.++...+++..+... .+. +..+..+++.+.| +.+.+.++++.+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~~~- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAALG- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHc-
Confidence 3478999999 77 679999999999999998776431 222 2235677777754 788888888876543
Q ss_pred HHhCCCCCCHHHHHHHHHHHH
Q 004921 490 ARRDLKEISKDEISDALERII 510 (723)
Q Consensus 490 ~r~~~~~I~~edl~~Al~~~~ 510 (723)
...|+.+++.+++....
T Consensus 204 ----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 ----VDSITLELLEEALQKRA 220 (413)
T ss_pred ----cCCCCHHHHHHHHhhhh
Confidence 45799999999987654
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=159.20 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=146.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee--------e
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS--------C 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~--------i 333 (723)
+..+.+|+||+|++.+++.|+..+.. .+.|+.+||+||||+|||++|+++|+++.+.... .
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567999999999999888766642 1456789999999999999999999988642110 1
Q ss_pred chhhHHHH-----H-----hhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVEL-----F-----VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~~-----~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|.++... + .......++++.+.+.. ....|++|||+|.+.. ...+.||..+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------~a~naLLk~l 143 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------HSFNALLKTL 143 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------------HHHHHHHHHH
Confidence 11111110 0 00223446666665432 2246999999998832 3567788888
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+.. ...+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++..++..+.. ++..+..++..+.| +++++
T Consensus 144 Ee~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 144 EEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDA 217 (363)
T ss_pred hcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 753 3456677777888889999988 66 578999999999999998877654432 23346777888776 88888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.+++..+... +...|+.+++.+++
T Consensus 218 l~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 218 LNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 8888876533 35678988887765
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.8e-14 Score=164.97 Aligned_cols=202 Identities=19% Similarity=0.272 Sum_probs=145.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------- 329 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------------- 329 (723)
..+.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 4567999999999998888776652 2456789999999999999999999988652
Q ss_pred -----------eeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 330 -----------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 330 -----------~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
++.+++++ ..+...+|++...+.. ....|++|||+|.+.. ...|.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NA 137 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNA 137 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHH
Confidence 22222211 1233456666655432 3347999999998832 25778
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~ 473 (723)
|+..|+.. ...+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++..+. .+..+..|++.+.|
T Consensus 138 LLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888843 3556777788888888888887 66 688999999999999988877665443 23346778888776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+++.+++..+... +...|+.+++...
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 899998888776532 3456787777554
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.60 E-value=4.8e-14 Score=145.53 Aligned_cols=210 Identities=14% Similarity=0.145 Sum_probs=133.8
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
.+..+|++.+|.++.. .+..+..... . .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~------~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFI------D---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhh------c---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3457899998776432 1111211111 1 112358999999999999999999986 4455555554321
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc-eEEEEeeCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG-VIVLAATNRPD 418 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~-ViVIaaTN~p~ 418 (723)
.. ..++++..+ ...+|+|||++.+..+ ...+..+..++..+ ...++ +++++++..|.
T Consensus 80 ~~--------~~~~~~~~~--~~dlLilDDi~~~~~~---------~~~~~~l~~l~n~~---~~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENLE--QQDLVCLDDLQAVIGN---------EEWELAIFDLFNRI---KEQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHH---HHcCCcEEEEeCCCChH
Confidence 11 112233332 3479999999988432 22333344444433 22333 45566666676
Q ss_pred CCC---ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 004921 419 VLD---SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 419 ~LD---~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 494 (723)
.++ +.|.++.+++..+.++.|+.++|.+|++.++....+. ++.-+..|+++..| +.+.+.++++.... +.....
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~-~~~~~~ 215 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDK-ASLQAQ 215 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH-HHHhcC
Confidence 654 8899866677899999999999999999777544332 23336788888886 89999999997643 333434
Q ss_pred CCCCHHHHHHHH
Q 004921 495 KEISKDEISDAL 506 (723)
Q Consensus 495 ~~I~~edl~~Al 506 (723)
+.||...+.+++
T Consensus 216 ~~it~~~v~~~L 227 (229)
T PRK06893 216 RKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHh
Confidence 579988888775
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.3e-14 Score=163.56 Aligned_cols=203 Identities=18% Similarity=0.235 Sum_probs=145.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc------------
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------------ 329 (723)
++.+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 35567999999999999888877643 2456789999999999999999999988653
Q ss_pred ------------eeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHH
Q 004921 330 ------------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (723)
Q Consensus 330 ------------~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln 393 (723)
++.++++ ...+...+|++.+.+.. ....|++|||+|.+.. ...|
T Consensus 78 ~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~n 137 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFN 137 (509)
T ss_pred HHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHH
Confidence 2222221 11233456666665442 2346999999999843 3578
Q ss_pred HHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCC
Q 004921 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (723)
Q Consensus 394 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G 472 (723)
.||..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..++...+. .+..+..+++.+.|
T Consensus 138 aLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 138 ALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899888853 3457777788888888888888 65 678899888888888887777654443 23346778888765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 473 ~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+++.+++..+... +...|+.+++.+.
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 899999999877533 2345777666554
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=1.7e-14 Score=173.64 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=151.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+-++++++|.++. +++++..|.... ..+++|+||||||||++++.+|... +..++.++
T Consensus 183 ~~~ld~~iGr~~e---i~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDE---IRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHH---HHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 3579999999875 666666554322 2478999999999999999999875 24577777
Q ss_pred hhhHHH--HHhhhhhhHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 335 ASEFVE--LFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 335 ~s~~~~--~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. ++.+ ..|.|+..+. ++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l~----~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPALA----RGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHhh----CCCeEEE
Confidence 776653 5788899999999999875 468999999999998654321 1111 2233444333 5678999
Q ss_pred EeeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC----C-CccccHHHHHhhCCCCC-----HH
Q 004921 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA----L-AKDVDFEKISRRTPGFT-----GA 476 (723)
Q Consensus 412 aaTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~----l-~~d~dl~~La~~t~G~s-----ga 476 (723)
+||+..+ .+|++|.| ||. .|.++.|+.+++.+||+.+.+... + -.+..+..++..+.+|- |.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9999754 48999999 995 899999999999999875543321 1 12334566667666543 55
Q ss_pred HHHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 004921 477 DLQNLMNEAAILAAR-RDLKEISKDEISDAL 506 (723)
Q Consensus 477 dL~~lv~~A~~~A~r-~~~~~I~~edl~~Al 506 (723)
-.-.++.+|+..... .....+..+++.+.+
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 666788887654433 233444555555443
No 73
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.59 E-value=4.5e-14 Score=153.28 Aligned_cols=212 Identities=21% Similarity=0.271 Sum_probs=138.7
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----Cceee
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFS 332 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-----~p~i~ 332 (723)
+|..++.+.+|++++|.+++++.|.+++.. + . ..++||+||||||||++|+++++++. .++++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 455566778999999999998888776542 1 1 22699999999999999999999873 45788
Q ss_pred echhhHHHHH-------------hhh-------hhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCCCCCCCChH
Q 004921 333 CAASEFVELF-------------VGV-------GASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDE 387 (723)
Q Consensus 333 is~s~~~~~~-------------~G~-------~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~ 387 (723)
++++++.... .+. ....++.+...... ..+.+|+|||+|.+.. .
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~ 140 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------D 140 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------H
Confidence 8887764321 011 11223333333322 2346999999998832 1
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHH
Q 004921 388 REQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKI 466 (723)
Q Consensus 388 ~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~L 466 (723)
..+.|+..++..... ..+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++..++++..++...+. ++..+..+
T Consensus 141 ---~~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l 212 (337)
T PRK12402 141 ---AQQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELI 212 (337)
T ss_pred ---HHHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 234455555543332 3455566666777778887 54 578999999999999999887655443 33346778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 467 SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 467 a~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+..+.| +.+++.+.+.. .+ . ....|+.+++.+++
T Consensus 213 ~~~~~g-dlr~l~~~l~~---~~-~-~~~~It~~~v~~~~ 246 (337)
T PRK12402 213 AYYAGG-DLRKAILTLQT---AA-L-AAGEITMEAAYEAL 246 (337)
T ss_pred HHHcCC-CHHHHHHHHHH---HH-H-cCCCCCHHHHHHHh
Confidence 887754 55555444443 33 2 23469999888765
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.1e-14 Score=161.64 Aligned_cols=214 Identities=21% Similarity=0.290 Sum_probs=153.1
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce----------
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---------- 330 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~---------- 330 (723)
....+.+|+|++|++.+.+.|+..+.. .+.|.++||+||||||||++|+++|+.+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 345678999999999999888765532 24577899999999999999999999886521
Q ss_pred -e-eechhhHHHH----------HhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 331 -F-SCAASEFVEL----------FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 331 -i-~is~s~~~~~----------~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
. .-+|..+.+. ....+...++++++.+... ...|++|||+|.+.. ..++.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~na 147 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNA 147 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHH
Confidence 1 1112121110 0112345678888777532 346999999998832 35788
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~ 473 (723)
|+..|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..++.++...+++..++..... ++..+..+++.+.|
T Consensus 148 LLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G- 221 (507)
T PRK06645 148 LLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG- 221 (507)
T ss_pred HHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 44567888888888899999998 66 578899999999999999888765543 22346778888876
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+.+++.++++.+...+.. ....|+.+++.+.+
T Consensus 222 slR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 222 SARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 999999999988655432 12357777776554
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.58 E-value=4.5e-14 Score=144.62 Aligned_cols=204 Identities=18% Similarity=0.238 Sum_probs=133.4
Q ss_pred Ccccccccc--chHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 265 GVTFADVAG--ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 265 ~~~f~dv~G--~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
..+|++.+. .+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 467888762 3445555554432 1235689999999999999999999876 5789999998876
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
... .+++.... .+.+|+|||+|.+... ......+..++..+. .....+|++++..+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~---~~~~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVR---EAGGRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChHH
Confidence 432 23333322 2469999999988431 111223333333332 2223445544444444
Q ss_pred CC---ccccCCCCc--ccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 004921 420 LD---SALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (723)
Q Consensus 420 LD---~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 493 (723)
++ +.+.+ |+ ..++.+++|+.+++..+++.+..+..+. .+.-+..|+.. ++.+.+++.++++++...+...
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~- 212 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA- 212 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh-
Confidence 32 66776 55 5789999999999999999876544332 22236777775 5569999999999987655554
Q ss_pred CCCCCHHHHHHHH
Q 004921 494 LKEISKDEISDAL 506 (723)
Q Consensus 494 ~~~I~~edl~~Al 506 (723)
...|+.+.+.+.+
T Consensus 213 ~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 KRKITIPFVKEVL 225 (226)
T ss_pred CCCCCHHHHHHHh
Confidence 4579988887765
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.9e-14 Score=163.54 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=148.8
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------eeec
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSCA 334 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i~is 334 (723)
++.+.+|+||+|++.+++.|++.+.. .++++++||+||+|+|||++|+++|+.++++- -.+.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 35567999999999999888877653 25678899999999999999999999876531 1111
Q ss_pred -hhhHHHH----------HhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 335 -ASEFVEL----------FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 335 -~s~~~~~----------~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
|..+... ..+.+...++++++.+.. ....||||||+|.+.. ...|.||..|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------------~A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--------------SAFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH--------------HHHHHHHHHH
Confidence 1111000 012234467777766532 2346999999998732 3578889888
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..++...+. .+..+..|++...| +.+++
T Consensus 144 EEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdA 217 (709)
T PRK08691 144 EEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDA 217 (709)
T ss_pred HhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHH
Confidence 853 3456778888889999888887 66 678888999999999998888765543 22346778888865 99999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.+++..+... +...|+.+++...+
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9999887643 23457776665553
No 77
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=1.6e-13 Score=152.49 Aligned_cols=221 Identities=18% Similarity=0.243 Sum_probs=150.5
Q ss_pred cccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhHH-
Q 004921 267 TFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFV- 339 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~~- 339 (723)
..+.++|.++..++|...+.. +.. ..|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 456788888877777666643 221 235679999999999999999999876 5788899875321
Q ss_pred ---------HHHhhh-------h-hhHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 340 ---------ELFVGV-------G-ASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 340 ---------~~~~G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
....+. . ...+..+++... ...+.||+|||+|.+.... ....+..|+..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 111110 1 112223333333 2456899999999996211 12366777776665
Q ss_pred CCCCCceEEEEeeCCCC---CCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhcCC---CCCccccHHHHHhhCCC--
Q 004921 402 FSGNSGVIVLAATNRPD---VLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRGK---ALAKDVDFEKISRRTPG-- 472 (723)
Q Consensus 402 ~~~~~~ViVIaaTN~p~---~LD~aLlrpgRfd-~~I~v~~Pd~~~R~~Il~~~l~~~---~l~~d~dl~~La~~t~G-- 472 (723)
.. ..++.+|+++|..+ .+++.+.+ ||. ..+.|++++.++..+|++.+++.. ....+..++.+++.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 43 23688888888764 46777766 553 578999999999999999887532 11122235666666632
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 473 ~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
...+.+.+++..|+..|..++...|+.+|+..|+++.
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2566777889999888888888899999999999876
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=5.3e-14 Score=152.27 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=134.8
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----Cceeeech
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFSCAA 335 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-----~p~i~is~ 335 (723)
.++.+.+|+|++|++++.+.|+.++.. . ..| ++||+||||||||++|+++|+++. ..++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD---G--------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 445678999999999998888776542 1 223 599999999999999999999873 24566666
Q ss_pred hhHHHHHhhhhhhHHHHHHHH---HH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCce
Q 004921 336 SEFVELFVGVGASRVRDLFEK---AK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV 408 (723)
Q Consensus 336 s~~~~~~~G~~~~~vr~lF~~---A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~V 408 (723)
++... ...+++.... .. ...+.|++|||+|.+... ..+.|+..|+.... ..
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~~--~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYSN--TT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcccC--Cc
Confidence 54321 1123332222 11 123579999999998431 34556666664433 23
Q ss_pred EEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 409 iVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
.+|.+||.++.+.+++++ |+ ..+.|++|+.++....++..++...+. .+..+..++....| +.+.+.+.++.+
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~-- 204 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT-- 204 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH--
Confidence 566778888888899998 65 579999999999999998877654432 23346777777765 555555555422
Q ss_pred HHHHhCCCCCCHHHHHHH
Q 004921 488 LAARRDLKEISKDEISDA 505 (723)
Q Consensus 488 ~A~r~~~~~I~~edl~~A 505 (723)
+ .+...|+.+++...
T Consensus 205 -~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 205 -H--SGFGFVNQENVFKV 219 (319)
T ss_pred -H--hcCCCCCHHHHHHH
Confidence 1 13456887776644
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.7e-14 Score=163.41 Aligned_cols=207 Identities=23% Similarity=0.333 Sum_probs=144.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------eee-c
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC-A 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i~i-s 334 (723)
..+.+|+||+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+++|+.+++.. -.+ +
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3457899999999999888776653 14567789999999999999999999886521 111 0
Q ss_pred hhhHHH-----H--Hh---hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEFVE-----L--FV---GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~~~-----~--~~---G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|..+.+ . +. ..+...+|++.+.+.. ....|+||||+|.|.. ...|.||..|+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------------~a~NALLKtLE 144 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLE 144 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------HHHHHHHHHHH
Confidence 111110 0 00 0123446666555432 3346999999999832 47889999998
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....|+..++...+. ++..+..|+..+.| +.++..
T Consensus 145 E--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al 218 (647)
T PRK07994 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDAL 218 (647)
T ss_pred c--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567788888889999999999 75 789999999999999998877554433 23346678888776 899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
+++..+... +...|+.+++..
T Consensus 219 ~lldqaia~----~~~~it~~~v~~ 239 (647)
T PRK07994 219 SLTDQAIAS----GNGQVTTDDVSA 239 (647)
T ss_pred HHHHHHHHh----cCCCcCHHHHHH
Confidence 998776432 223455555443
No 80
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=7.9e-14 Score=159.62 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=134.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r 377 (723)
+.++|||++|+|||+|++++++++ +..++++++.+|.+.+.........+.|.+.. ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999976 56889999999887765433222223344332 246899999999985431
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC---CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHh
Q 004921 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD---VLDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l 452 (723)
..+ ..|+..++.+...++.+||++...|. .+++.|++ || ...+.+..||.+.|.+||+.++
T Consensus 394 ---------~tq---eeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ---------STQ---EEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ---------HHH---HHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 122 22333333332333445554444443 57889998 76 5577999999999999999888
Q ss_pred cCCCCCc-cccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 453 RGKALAK-DVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 453 ~~~~l~~-d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
+...+.- +.-+..|+.+..+ +.++|..+++.....+...+ +.|+.+.+.+++..++.
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 7655542 2236778888775 89999999998866665544 67999999999877654
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.8e-14 Score=164.99 Aligned_cols=193 Identities=20% Similarity=0.255 Sum_probs=137.7
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeeec-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSCA- 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~is- 334 (723)
..+.+|+||+|++.+++.|++.+.. .+++..+||+||||||||++|+++|+.+++. +..++
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 4557999999999999888776542 1456778999999999999999999988763 11111
Q ss_pred hhhHHHH-------Hh---hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEFVEL-------FV---GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~~~~-------~~---G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|-.+.+. +- ..+...+|++.+.+.. ....|+||||+|.|. ...+|.||..|+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtLE 144 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTLE 144 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHHh
Confidence 1111110 00 0123345666555432 234699999999983 347899999998
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.+..|.+.+++ |+ .++.|.+++.++..++|+..+....+. .+..+..|++.+.| +.+++.
T Consensus 145 E--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 145 E--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL 218 (944)
T ss_pred c--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34556777778888889999998 65 679999999999999988877654332 22346777888776 899999
Q ss_pred HHHHHHH
Q 004921 480 NLMNEAA 486 (723)
Q Consensus 480 ~lv~~A~ 486 (723)
+++..+.
T Consensus 219 nLLdQal 225 (944)
T PRK14949 219 SLTDQAI 225 (944)
T ss_pred HHHHHHH
Confidence 9998775
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=1.7e-14 Score=174.13 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=139.9
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeech
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~ 335 (723)
-++++++|.++. +++++..|.... ..+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 175 ~~l~~vigr~~e---i~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEE---IRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHH---HHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 478999999774 666666554322 2468999999999999999999987 778899888
Q ss_pred hhHH--HHHhhhhhhHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEE
Q 004921 336 SEFV--ELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (723)
Q Consensus 336 s~~~--~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIa 412 (723)
+.+. ..|.|..+.+++.+|+.+.. ..++||||||+|.+.+.+.. .++.+ ..+.|...+ .++.+.+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~d----~~~~lkp~l----~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAMD----AGNMLKPAL----ARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccchh----HHHHhcchh----hcCCCeEEE
Confidence 8776 35788999999999998643 56899999999999765432 11111 223333322 356789999
Q ss_pred eeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCc-----cccHHHHHhhCC-----CCCHHH
Q 004921 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-----DVDFEKISRRTP-----GFTGAD 477 (723)
Q Consensus 413 aTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-----d~dl~~La~~t~-----G~sgad 477 (723)
+|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.......... +..+...+..+. .+-+..
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdk 389 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChH
Confidence 999887 38999999 997 588999999999999987665433222 112223323333 234455
Q ss_pred HHHHHHHHHH
Q 004921 478 LQNLMNEAAI 487 (723)
Q Consensus 478 L~~lv~~A~~ 487 (723)
...++..++.
T Consensus 390 Ai~LiD~aaa 399 (857)
T PRK10865 390 AIDLIDEAAS 399 (857)
T ss_pred HHHHHHHHhc
Confidence 5566666653
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5e-14 Score=158.90 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=148.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC--------------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------------- 328 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------------- 328 (723)
+.+.+|+||+|++.+++.|++.+.. .++|+++||+||||+|||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 4567999999999999888765542 256788999999999999999999996533
Q ss_pred ----------ceeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 329 ----------PFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 329 ----------p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+.. ..+|.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~Na 135 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNA 135 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHH
Confidence 223333321 1234567777777653 2346999999998832 36788
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~ 473 (723)
||..|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..++..+.. ++..+..|++.+.|
T Consensus 136 LLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 136 LLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999985 34567788888888889999998 55 568999999999999888877654433 33346778888875
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+++.+++..+.... ...|+.+++.+.
T Consensus 210 slR~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 210 SMRNALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred CHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8999999998876543 246888777664
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.8e-14 Score=161.77 Aligned_cols=209 Identities=18% Similarity=0.276 Sum_probs=146.0
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc------------
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------------ 329 (723)
++.+.+|+||+|++.+++.|++.+..- +.|..+||+||+|+|||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 345679999999999998888766532 456778999999999999999999987641
Q ss_pred eeee-chhhH--------HHH--HhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 330 FFSC-AASEF--------VEL--FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 330 ~i~i-s~s~~--------~~~--~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
.-.+ +|..+ .+. ....+...+|++.+.+... .-.|++|||+|.+.. ...|.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a~Na 143 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TAFNA 143 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HHHHH
Confidence 1111 11111 100 0012334577777665432 235999999999843 25788
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~ 473 (723)
||..|+. ....+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+++..+. ++..+..|++.+.|
T Consensus 144 LLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G- 217 (618)
T PRK14951 144 MLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG- 217 (618)
T ss_pred HHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 34566778888888888888888 55 689999999999999998877655443 22346788888876
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+++.+++..+... +...|+.+++.+.
T Consensus 218 slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 218 SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 899998888766543 2345776666544
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.5e-14 Score=158.20 Aligned_cols=202 Identities=22% Similarity=0.320 Sum_probs=144.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------- 329 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------------- 329 (723)
..+.+|+||+|++.+++.|+..+.. .++|..+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 4567999999999999888887764 1456678999999999999999999987531
Q ss_pred ----------eeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 330 ----------FFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 330 ----------~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
++.++.+. ..+...++++.+.+.. ..+.||+|||+|.+. ...++.|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naL 136 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNAL 136 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHH
Confidence 22222210 1223445665544432 345799999998773 2367888
Q ss_pred HHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCC
Q 004921 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFT 474 (723)
Q Consensus 396 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~s 474 (723)
+..|+.. ...+++|.+|+.+..+.+.+.+ |+ ..+.|.+|+.++....++..++...+. .+..+..++..+.| +
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-d 210 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-A 210 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888853 3456777788889999999998 65 479999999999999998887655443 22346778888776 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 475 GADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 475 gadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.+++.++++.+... ...|+.+++.+.+
T Consensus 211 lR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 211 MRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77777777765321 3468888776653
No 86
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=1.5e-13 Score=154.62 Aligned_cols=193 Identities=19% Similarity=0.268 Sum_probs=129.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA 379 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~ 379 (723)
++++||||||+|||+|++++++++ +..++++++.+|...+.......-...|.... ..+.+|+|||++.+..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999875 78899999988776544322111112344433 3467999999998853211
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcC
Q 004921 380 GLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD---VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRG 454 (723)
Q Consensus 380 ~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~---~LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~ 454 (723)
...+.-.++|.+. .....+|+++++.|. .+++.|++ ||. ..+.+.+|+.++|..|++..++.
T Consensus 220 ----~qeelf~l~N~l~-------~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 220 ----TQEEFFHTFNSLH-------TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ----hHHHHHHHHHHHH-------HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1112222233322 223445666555554 47789998 885 78899999999999999988866
Q ss_pred CCCCc-cccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHc
Q 004921 455 KALAK-DVDFEKISRRTPGFTGADLQNLMNEAAILAAR--RDLKEISKDEISDALERIIA 511 (723)
Q Consensus 455 ~~l~~-d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r--~~~~~I~~edl~~Al~~~~~ 511 (723)
..+.- +..+..++....+ +.++|.+.++..+...+. -....++.+++.+++...+.
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 54432 2235667777775 888999888887532221 13357999999999987654
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.55 E-value=1.9e-13 Score=140.65 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=131.7
Q ss_pred CCCcccccccc--chHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh
Q 004921 263 ETGVTFADVAG--ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~G--~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~ 337 (723)
..+.+|+++++ .+.+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 44578999763 3444444444333 12335679999999999999999999875 77888998877
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC-
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR- 416 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~- 416 (723)
+.+.. .. .....+|+|||+|.+.. ..... |+..++........++|.+++.
T Consensus 81 ~~~~~------------~~--~~~~~~liiDdi~~l~~-----------~~~~~---L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLAF------------DF--DPEAELYAVDDVERLDD-----------AQQIA---LFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred hHHHH------------hh--cccCCEEEEeChhhcCc-----------hHHHH---HHHHHHHHHHcCCcEEEEeCCCC
Confidence 54321 11 12356999999998732 12223 3333433333344334444443
Q ss_pred CC--CCCccccCCCCc--ccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 004921 417 PD--VLDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (723)
Q Consensus 417 p~--~LD~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 491 (723)
|. .+.+.|++ || ...+.+++|+.+++..+++.+.....+. ++.-+..|++..+ .+.+++.++++.....+..
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~ 209 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLE 209 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Confidence 32 35567776 65 5789999999999989988766543332 2223677777554 5999999999986554444
Q ss_pred hCCCCCCHHHHHHHHH
Q 004921 492 RDLKEISKDEISDALE 507 (723)
Q Consensus 492 ~~~~~I~~edl~~Al~ 507 (723)
.++.|+...+.+++.
T Consensus 210 -~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 -QKRPVTLPLLREMLA 224 (227)
T ss_pred -hCCCCCHHHHHHHHh
Confidence 447899988888764
No 88
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=4.3e-14 Score=171.04 Aligned_cols=201 Identities=21% Similarity=0.318 Sum_probs=144.8
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeech
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~ 335 (723)
-+++.++|.++. +++++..|... ...+++|+||||||||++++++|... +.+++.++.
T Consensus 170 ~~~~~~igr~~e---i~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEE---IRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHH---HHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 478899999875 55556554332 23568999999999999999999875 678888888
Q ss_pred hhHH--HHHhhhhhhHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEE
Q 004921 336 SEFV--ELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (723)
Q Consensus 336 s~~~--~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIa 412 (723)
+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+... ++ ....+.|...+ .+..+.+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~~----~d~~~~Lk~~l----~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--GA----MDAGNMLKPAL----ARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--ch----hHHHHHhchhh----hcCceEEEE
Confidence 7775 45788889999999999865 458999999999997643221 11 12233333322 356789999
Q ss_pred eeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-----ccHHHHHhhCCCC-----CHHH
Q 004921 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-----VDFEKISRRTPGF-----TGAD 477 (723)
Q Consensus 413 aTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-----~dl~~La~~t~G~-----sgad 477 (723)
+|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+......... ..+..++..+.+| -|.-
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 999874 47999999 996 5899999999999999877655443322 2345555555543 3566
Q ss_pred HHHHHHHHHHHHHH
Q 004921 478 LQNLMNEAAILAAR 491 (723)
Q Consensus 478 L~~lv~~A~~~A~r 491 (723)
.-.++.+|+.....
T Consensus 385 Aidlld~a~a~~~~ 398 (852)
T TIGR03346 385 AIDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHHHHHHHHh
Confidence 67888888765443
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=1.5e-13 Score=148.20 Aligned_cols=207 Identities=19% Similarity=0.279 Sum_probs=133.3
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
.|..++.+.+|+|++|++++++.+...+.. ...|..+||+||||+|||++|++++++.+.+++.+++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 455567778999999999999888776651 135667888999999999999999999999999999876
Q ss_pred HHHHHhhhhhhHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 338 FVELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
. . .......+........ ...+.+|+|||+|.+.. ...+ +.|...++... .++.+|.+||.
T Consensus 79 -~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~---~~L~~~le~~~--~~~~~Ilt~n~ 140 (316)
T PHA02544 79 -C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQ---RHLRSFMEAYS--KNCSFIITANN 140 (316)
T ss_pred -c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHH---HHHHHHHHhcC--CCceEEEEcCC
Confidence 1 1 1111111222111111 13468999999998732 1122 23333444332 45678889999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc---------CCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR---------GKALAKDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~---------~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
++.+++++++ || ..+.++.|+.+++.++++.+++ +..+.+ ..+..++....| +++.+++....
T Consensus 141 ~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~-~al~~l~~~~~~----d~r~~l~~l~~ 212 (316)
T PHA02544 141 KNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDM-KVLAALVKKNFP----DFRRTINELQR 212 (316)
T ss_pred hhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHhcCC----CHHHHHHHHHH
Confidence 9999999998 77 4789999999999887764322 222211 124666666554 44455444333
Q ss_pred HHHHhCCCCCCHHHHHH
Q 004921 488 LAARRDLKEISKDEISD 504 (723)
Q Consensus 488 ~A~r~~~~~I~~edl~~ 504 (723)
.+. ...++.+++..
T Consensus 213 ~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 213 YAS---TGKIDAGILSE 226 (316)
T ss_pred HHc---cCCCCHHHHHH
Confidence 321 23566655443
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=158.81 Aligned_cols=208 Identities=23% Similarity=0.344 Sum_probs=147.0
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeeec-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSCA- 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~is- 334 (723)
..+.+|+||+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.+.++ .-.+.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 4467999999999999888877653 1456789999999999999999999987542 11111
Q ss_pred hhhHHH----------HHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEFVE----------LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~~~----------~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|..+.+ ...+.+...++++.+.+.. ....|++|||+|.+.. ...|.||..++
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLE 144 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNALLKTLE 144 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHHHHHhc
Confidence 111110 0011334567777777653 2346999999998832 36788998888
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.++.+.+.+++ |+ ..+.|.+|+.++....++..++...+. ++..+..+++...| +.+++.
T Consensus 145 e--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al 218 (559)
T PRK05563 145 E--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDAL 218 (559)
T ss_pred C--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34567777778889999999988 66 467899999999999998877655443 22346677887776 889998
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+++..+.... ...|+.+++...
T Consensus 219 ~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 219 SILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHhc----cCCCCHHHHHHH
Confidence 8888775442 345777766544
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=158.40 Aligned_cols=209 Identities=20% Similarity=0.295 Sum_probs=145.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeeec-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSCA- 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~is- 334 (723)
..+.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++. .-.++
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4457999999999999888776653 1456778999999999999999999988652 11111
Q ss_pred hhhHHH-----H-----HhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEFVE-----L-----FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~~~-----~-----~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|..+.. . -...+...+|++.+.+.. ....|++|||+|.+.. ...|.||..|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LE 144 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLE 144 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------------HHHHHHHHHHh
Confidence 111000 0 001233457777776643 2246999999998832 36788999988
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.++.+.+.+++ |+ ..++|..++.++..+.+...++...+. .+..+..+++.+.| +.+++.
T Consensus 145 e--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al 218 (527)
T PRK14969 145 E--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDAL 218 (527)
T ss_pred C--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 34566777788888888888888 65 789999999999988888777544433 22345677777765 899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+++..+... +...|+.+++.+.+
T Consensus 219 ~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 219 SLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999877543 34557776665543
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=8.4e-14 Score=154.05 Aligned_cols=187 Identities=22% Similarity=0.363 Sum_probs=127.8
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee------ee-chhhHH
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF------SC-AASEFV 339 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i------~i-s~s~~~ 339 (723)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|+.+.+.-- .+ +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999998875332 233445668899999999999999999999997644310 00 111110
Q ss_pred HH------H-----hhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 004921 340 EL------F-----VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (723)
Q Consensus 340 ~~------~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~ 404 (723)
.. + ...+...+|++++.+.. ....|+||||+|.+.. ...|.||..|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep-- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP-- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcC--
Confidence 00 0 11223457888887764 2346999999999943 2458888888853
Q ss_pred CCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHH
Q 004921 405 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 405 ~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL 478 (723)
..++++|.+|+.++.|.|.+++ |+ ..+.|++|+.++..+++.... .+. ......++..+.|..+..+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 3345555556668999999999 66 689999999998877776322 232 2345677888887555444
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=2.1e-13 Score=160.82 Aligned_cols=209 Identities=22% Similarity=0.270 Sum_probs=140.7
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
..+.+|+|++|++.+......+...+... ...++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~---- 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA---- 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh----
Confidence 34578999999999875433333333221 12468999999999999999999999999999887531
Q ss_pred hhhhhhHHHHHHHHHH-----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC-
Q 004921 343 VGVGASRVRDLFEKAK-----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR- 416 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~-----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~- 416 (723)
+...+++.+..+. .....+|||||+|.+... ..+.|+..++ +..+++|++|+.
T Consensus 89 ---~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTen 147 (725)
T PRK13341 89 ---GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTEN 147 (725)
T ss_pred ---hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCC
Confidence 1122334444332 134579999999998421 2445666555 345677776643
Q ss_pred C-CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-------CCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 417 P-DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR-------GKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 417 p-~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~-------~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
+ ..+++++++ |+ ..+.+++++.+++..+++..+. ...+. ++..+..|++...| +.+++.++++.+..
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2 468899998 53 4689999999999999998775 21121 22236778887765 88889899888764
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHH
Q 004921 488 LAARRDL--KEISKDEISDALERI 509 (723)
Q Consensus 488 ~A~r~~~--~~I~~edl~~Al~~~ 509 (723)
.+..... ..|+.+++.+++.+.
T Consensus 224 ~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 224 STPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred hcccCCCCceeccHHHHHHHHHHh
Confidence 3322221 237888888887664
No 94
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=1.4e-13 Score=153.07 Aligned_cols=182 Identities=28% Similarity=0.338 Sum_probs=118.8
Q ss_pred ccccc-cccchHhHHHHHHHHHH-hcCchhhhh--hCCC-CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 266 VTFAD-VAGADQAKLELQEVVDF-LKNPDKYTA--LGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 266 ~~f~d-v~G~~~~k~~L~eiv~~-l~~~~~~~~--~g~~-~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
-.+++ |+|++++|+.|...+.. ++.-..... -... ...++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 45665 89999999998766532 121100000 0112 2358999999999999999999999999999999988754
Q ss_pred -HHhhhhhhH-HHHHHHHH----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------
Q 004921 341 -LFVGVGASR-VRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------- 403 (723)
Q Consensus 341 -~~~G~~~~~-vr~lF~~A----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----------- 403 (723)
.|+|..... +..++..+ ....++||||||||.+.+++.......+.....+++.||+.|++-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 466664333 34444332 2346789999999999876332211112222457888888887531
Q ss_pred CCCceEEEEeeCCCC----------------------------------------------------CCCccccCCCCcc
Q 004921 404 GNSGVIVLAATNRPD----------------------------------------------------VLDSALLRPGRFD 431 (723)
Q Consensus 404 ~~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlrpgRfd 431 (723)
.....++|.|+|-.. -+.|+|+ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 111345566655410 0233443 4999
Q ss_pred cccccCCCCHHHHHHHHH
Q 004921 432 RQVTVDRPDVAGRVKILQ 449 (723)
Q Consensus 432 ~~I~v~~Pd~~~R~~Il~ 449 (723)
.++.|.+.+.++..+|+.
T Consensus 305 ~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 305 VVATLEELDEEALVRILT 322 (412)
T ss_pred eeeecCCCCHHHHHHHHH
Confidence 999999999999998886
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.53 E-value=1.9e-13 Score=149.68 Aligned_cols=205 Identities=22% Similarity=0.364 Sum_probs=145.9
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-----------
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP----------- 329 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p----------- 329 (723)
....+.+|+|++|++++++.|.+.+.. .+.|+.+||+||||+|||++|+++++.+..+
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345568999999999999888876642 1356789999999999999999999987432
Q ss_pred -------------eeeechhhHHHHHhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHH
Q 004921 330 -------------FFSCAASEFVELFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTI 392 (723)
Q Consensus 330 -------------~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~l 392 (723)
++.+++. ...+...++++++.+... ...||+|||+|.+.. ...
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~ 134 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAF 134 (355)
T ss_pred HHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHH
Confidence 1111111 011233567777776542 235999999998832 356
Q ss_pred HHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCC
Q 004921 393 NQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTP 471 (723)
Q Consensus 393 n~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~ 471 (723)
+.|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..++++.+++...+. ++..+..++..+.
T Consensus 135 ~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 135 NALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888753 3456777788888888889988 66 578999999999999999887655432 2233566777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 472 GFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 472 G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
| +++.+.+.++.+.... ...|+.+++.+++
T Consensus 210 g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 210 G-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred C-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 5 7788878777665442 2458999988765
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.8e-13 Score=157.28 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=142.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc------------
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------------ 329 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------------ 329 (723)
.+.+.+|+||+|++.+++.|++.+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 35568999999999999888877653 1345689999999999999999999988653
Q ss_pred ------------eeeechhhHHHHHhhhhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHH
Q 004921 330 ------------FFSCAASEFVELFVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (723)
Q Consensus 330 ------------~i~is~s~~~~~~~G~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln 393 (723)
++.+++.. ..+...++.+.+.+. .....||||||+|.+.. ..++
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------~a~n 137 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------EAFN 137 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------HHHH
Confidence 22222110 111233444333322 23347999999999832 3578
Q ss_pred HHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCC
Q 004921 394 QLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPG 472 (723)
Q Consensus 394 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G 472 (723)
.|+..|+. ....+++|.+||.++.+.+.+++ |+ .++.|+.++.++..++|+..++...+. ++..+..+++.+.|
T Consensus 138 aLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888875 33467888888888888888888 66 478999999999999888777654432 23346777777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 473 FTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 473 ~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+.+++.+++..+. ..+...|+.+++.+++
T Consensus 213 -dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 -SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred -CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 7777777777542 2244578888776554
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.2e-13 Score=162.56 Aligned_cols=209 Identities=21% Similarity=0.193 Sum_probs=142.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee-----eechh
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-----SCAAS 336 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i-----~is~s 336 (723)
++.+.+|+||+|++.+++.|+..+.. .++++.+||+||+|||||++|+.||+.+.+.-- +-.|.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 35567999999999999888776652 245677999999999999999999998865210 01111
Q ss_pred hHHHHHhh---------------hhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHH
Q 004921 337 EFVELFVG---------------VGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (723)
Q Consensus 337 ~~~~~~~G---------------~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~ 397 (723)
.+.....| .+...+|++-+.+. .....|+||||+|.|.. ...|.||+
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------~a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------QGFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------HHHHHHHH
Confidence 11111000 12334555443332 23456999999999932 46788999
Q ss_pred hhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHhhCCCCCHH
Q 004921 398 EMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGA 476 (723)
Q Consensus 398 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d~dl~~La~~t~G~sga 476 (723)
.|+.. ...+++|.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..++...+.. +..+..|++...| +.+
T Consensus 143 ~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 3467778888888889999998 55 5789999999999998988876554432 2235667777765 888
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 477 DLQNLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 477 dL~~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
++.++++..+.. .+...|+.+++..
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~a 241 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHH
Confidence 888888875422 2234576665543
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.8e-13 Score=154.83 Aligned_cols=208 Identities=21% Similarity=0.322 Sum_probs=141.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeee-c
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSC-A 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~i-s 334 (723)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+.+|+.+.+ |.-.+ +
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4457999999999999887766642 135677999999999999999999997754 11111 0
Q ss_pred hh--------hHHH--HHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 AS--------EFVE--LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s--------~~~~--~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|. ++.+ .....+...++++.+.+.. ....|++|||+|.+.. ...|.||..|+
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------~a~naLLK~LE 144 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------QSFNALLKTLE 144 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------------HHHHHHHHHHh
Confidence 10 0000 0001122345566555442 2346999999998832 36788888888
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..++...+. .+..+..++..+.| +.+++.
T Consensus 145 e--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~al 218 (546)
T PRK14957 145 E--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDAL 218 (546)
T ss_pred c--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 33456777777778888888888 55 689999999999888888776654433 23345677777765 888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+++..+.... + ..|+.+++.++
T Consensus 219 nlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 219 SLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8888776432 2 45777666653
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=7.1e-13 Score=137.39 Aligned_cols=206 Identities=16% Similarity=0.174 Sum_probs=130.5
Q ss_pred CCCccccccc-c-chHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh
Q 004921 263 ETGVTFADVA-G-ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~-G-~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~ 337 (723)
.+..+|++.+ | ...+...++++.. .+ .+..++||||||||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3446888876 4 3344444444322 11 12479999999999999999999875 44566666554
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc-eEEEEeeCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG-VIVLAATNR 416 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~-ViVIaaTN~ 416 (723)
+... ..++++.... ..+|+|||++.+..+ ...+..+-.++..+- ..++ .+++++++.
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~---------~~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD---------ELWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC---------HHHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 3221 1122222222 259999999988432 223333333333321 1232 355666666
Q ss_pred CCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 417 PDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 417 p~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
|.. +.+.|++ |+. .++.+.+|+.+++.++++.+.....+. ++.-+..|+++..| +.+.+.++++..... .
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~-~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRA-S 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHH-H
Confidence 655 6789998 664 789999999999999998866543332 22336788888886 999999999986433 3
Q ss_pred HhCCCCCCHHHHHHHH
Q 004921 491 RRDLKEISKDEISDAL 506 (723)
Q Consensus 491 r~~~~~I~~edl~~Al 506 (723)
....+.||.+.+.+++
T Consensus 218 l~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 ITAQRKLTIPFVKEIL 233 (235)
T ss_pred HhcCCCCCHHHHHHHH
Confidence 3344669988888775
No 100
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=1.8e-13 Score=165.24 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=143.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeech
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~ 335 (723)
-.++.++|.++..+.+.+++ .. +.+++++|+||||||||++|+++|... +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L---~r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQIL---GR---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHH---cc---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 35889999987765555443 22 234689999999999999999999976 478999998
Q ss_pred hhHH--HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 336 SEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 336 s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
+.+. ..|.|+.+.+++.+|+.+....++||||||||.+...++.. +.. ...+-|...+. ++.+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--g~~----~~a~lLkp~l~----rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE--GAI----DAANILKPALA----RGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC--Ccc----cHHHHhHHHHh----CCCcEEEEe
Confidence 8877 35788899999999999988888999999999998654321 111 12233333332 567899999
Q ss_pred eCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhc------CCCCCccccHHHHHhhCCCCC-----HHH
Q 004921 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR------GKALAKDVDFEKISRRTPGFT-----GAD 477 (723)
Q Consensus 414 TN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~------~~~l~~d~dl~~La~~t~G~s-----gad 477 (723)
|+..+ ..|+++.+ ||. .|.++.|+.++...|++.... +..+ .+..+..++..+.+|. |.-
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdk 389 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDK 389 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchH
Confidence 99765 47899999 996 579999999999888874431 2223 2223555666555543 455
Q ss_pred HHHHHHHHHHHHHH
Q 004921 478 LQNLMNEAAILAAR 491 (723)
Q Consensus 478 L~~lv~~A~~~A~r 491 (723)
.-.++.+|+.....
T Consensus 390 aidlld~a~a~~~~ 403 (821)
T CHL00095 390 AIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHHHh
Confidence 66788887755433
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=5.1e-13 Score=150.72 Aligned_cols=220 Identities=16% Similarity=0.281 Sum_probs=143.8
Q ss_pred Cccccccc-cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhH
Q 004921 265 GVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEF 338 (723)
Q Consensus 265 ~~~f~dv~-G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~ 338 (723)
..+|++.+ |... ...+..+..+..+|. ...++++|||++|+|||+|++++++++ +..++++++.+|
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 36899965 4433 222222222223221 123569999999999999999999854 578899999998
Q ss_pred HHHHhhhhhh---HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 339 VELFVGVGAS---RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 339 ~~~~~G~~~~---~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
...+...... .+..+.+.. ..+.+|+|||++.+..+ ...+ ..|...++......+.+|+++..
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k---------~~~~---e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK---------EKTN---EIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC---------HHHH---HHHHHHHHHHHHcCCcEEEECCC
Confidence 8766543221 222222222 24579999999988432 1222 23333333332233445555555
Q ss_pred CCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCC---CccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 416 RPDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKAL---AKDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 416 ~p~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l---~~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
.|+. +++.|.+ ||. ..+.+.+|+.++|.+|++.+++...+ -++..+..|+....| +++.+.++++.+..
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 5543 6788888 774 57789999999999999998865432 223346778888876 99999999999876
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHH
Q 004921 488 LAARRD-LKEISKDEISDALERI 509 (723)
Q Consensus 488 ~A~r~~-~~~I~~edl~~Al~~~ 509 (723)
.+.... ...|+.+.+.+++...
T Consensus 326 ~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 326 WSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHhcccCCCCCCHHHHHHHHhhc
Confidence 655542 3679999999998765
No 102
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-13 Score=157.18 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=128.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH--------
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-------- 340 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-------- 340 (723)
.|..|++++|+.+-|.+...+.... + ...-++|+||||+|||+|++.||+.+|.+|+.++..-..+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~---~---kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK---L---KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc---C---CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4678999999988887765332211 1 1134899999999999999999999999999998754432
Q ss_pred -HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-------------CC
Q 004921 341 -LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-------------NS 406 (723)
Q Consensus 341 -~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-------------~~ 406 (723)
.|+|....++-+-..+|...+| +++|||||.++..-. ++ -...||+.+|--.. -+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GD-----PASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CC-----hHHHHHhhcCHhhcCchhhccccCccchh
Confidence 4788888888888999988877 889999999975421 11 33456666553211 24
Q ss_pred ceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l 452 (723)
.|++|+|+|..+.|+..|+. |+ .+|++.-++.++..+|.+.|+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 69999999999999999999 88 689999999999999999887
No 103
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-13 Score=155.32 Aligned_cols=163 Identities=26% Similarity=0.415 Sum_probs=128.1
Q ss_pred ccccccchHhHHHHHHHHHH--hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-----
Q 004921 268 FADVAGADQAKLELQEVVDF--LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE----- 340 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~--l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~----- 340 (723)
=+|-.|++++|+.+.|++.. |+.. .-.+-++|+||||+|||+++|.||+.+|..|+.++..-+.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 35678999999999887765 4443 22356899999999999999999999999999998653322
Q ss_pred ----HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-------------
Q 004921 341 ----LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------------- 403 (723)
Q Consensus 341 ----~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~------------- 403 (723)
.|+|....++-+.++......| +++|||||.+++.- . ++ --..||+.||--.
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~----q-GD-----PasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH----Q-GD-----PASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC----C-CC-----hHHHHHHhcChhhccchhhhcccccc
Confidence 3788888888888999888877 88999999998311 1 11 2334555554211
Q ss_pred CCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 004921 404 GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 404 ~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l 452 (723)
.-+.|++|||.|..+.|++.|+. |+ ..|.++-+..++..+|.+.|+
T Consensus 551 DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred chhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 12469999999999999999999 88 689999999999999999887
No 104
>PRK08727 hypothetical protein; Validated
Probab=99.51 E-value=8.1e-13 Score=136.80 Aligned_cols=180 Identities=21% Similarity=0.244 Sum_probs=120.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGA 379 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~ 379 (723)
..++|+||+|||||+|+++++.++ +...++++..++... +.+.++... ...+|+|||+|.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~--- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQ--- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---
Confidence 459999999999999999997764 667777776654432 233444443 3469999999988432
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC---CccccCCCCc--ccccccCCCCHHHHHHHHHHHhcC
Q 004921 380 GLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL---DSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSRG 454 (723)
Q Consensus 380 ~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L---D~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l~~ 454 (723)
......+-.++..+. ....-+|+++...|..+ +++|++ || ..++.+++|+.+++.+|++.++..
T Consensus 109 ------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 109 ------REDEVALFDFHNRAR---AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred ------hHHHHHHHHHHHHHH---HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 122233334444332 22223444455556654 789998 76 567899999999999999987654
Q ss_pred CCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 455 KALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 455 ~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
..+. ++..+..|++.+.| +.+.+.++++.....+... .+.||.+.+.+.+..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHhh
Confidence 3332 23346788888875 7777777788765444444 357998888887753
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=1.9e-13 Score=162.98 Aligned_cols=216 Identities=25% Similarity=0.324 Sum_probs=142.5
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH---------
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--------- 340 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~--------- 340 (723)
|+.|++.+|+.+.+.+...+.... .....++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 489999999999887775332111 12235999999999999999999999999999888654322
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----C--------CCCc
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----S--------GNSG 407 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~--------~~~~ 407 (723)
.|.|....++...+..+....| ||+|||||.+..... + .....|+..+|.- . .-++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g-----~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G-----DPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C-----CHHHHHHHHhccccEEEEecccccccccCCc
Confidence 2455555566666666654444 899999999965321 1 1345666666531 1 1267
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC-----CCCC---cccc---HHHHHh-hCCCCCH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG-----KALA---KDVD---FEKISR-RTPGFTG 475 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~-----~~l~---~d~d---l~~La~-~t~G~sg 475 (723)
+++|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.|+.. ..+. -.++ +..+++ .+..+-.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~Ga 541 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGV 541 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCC
Confidence 8999999987 59999999 994 7999999999999999988731 1111 0111 344443 2334445
Q ss_pred HHHHHHHHHHHHHHHHh----CC---CCCCHHHHHHHH
Q 004921 476 ADLQNLMNEAAILAARR----DL---KEISKDEISDAL 506 (723)
Q Consensus 476 adL~~lv~~A~~~A~r~----~~---~~I~~edl~~Al 506 (723)
+.|+.+++..+...+.+ +. -.|+.+++.+.+
T Consensus 542 R~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 542 RSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 66666666554433332 11 246666665554
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.50 E-value=3.2e-13 Score=140.18 Aligned_cols=195 Identities=20% Similarity=0.220 Sum_probs=133.9
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc------e
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------F 330 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------~ 330 (723)
.-|...+.+.+|+|++|++.+.+.|...+.. ++ -..+|||||||||||+.|+++|+++..| +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RI-----------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3455667788999999999999888876654 21 2358999999999999999999998652 2
Q ss_pred eeechhhHHHHHhhhhhhHHHHHHHHHHcCC---------C-eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 331 FSCAASEFVELFVGVGASRVRDLFEKAKSKA---------P-CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 331 i~is~s~~~~~~~G~~~~~vr~lF~~A~~~a---------P-~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
...+.++..+.-+ ...+++ -|.+..... | -|++|||.|.+.. ...+.|...|+
T Consensus 92 l~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTME 154 (346)
T ss_pred hhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHh
Confidence 3334444333211 111121 233332211 2 6999999999843 36788889999
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~-dl~~La~~t~G~sgadL~ 479 (723)
.+... +.+|..||..+.|...+.+ |+ ..+.|+..+.+.....|+....+..+.-+. .+..++....| +-++..
T Consensus 155 ~~s~~--trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFSRT--TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccccc--eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 76544 5778888999999999998 66 467777777777777777777665554333 36777777776 555555
Q ss_pred HHHHHHH
Q 004921 480 NLMNEAA 486 (723)
Q Consensus 480 ~lv~~A~ 486 (723)
..++.+.
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 5555554
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.7e-13 Score=155.17 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=143.6
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeee-c
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-A 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~i-s 334 (723)
+.+.+|+||+|++.+++.|+..+.. .++|+.+||+||+|||||++|+++|+.+++. .-.+ +
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 4567999999999999888776642 2456778999999999999999999987642 1111 1
Q ss_pred hhhHHHH---------Hhh---hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 335 ASEFVEL---------FVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 335 ~s~~~~~---------~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
|-.+... ..+ .+...+|++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------~A~NALLK~ 141 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------AGFNALLKI 141 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------HHHHHHHHH
Confidence 1111100 000 123445555544432 2336999999999832 378889999
Q ss_pred hcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHH
Q 004921 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgad 477 (723)
|+. ....+++|.+|+.++.|.+.+++ |. .++.|..++.++..+.++..++..... ++..+..+++...| +.++
T Consensus 142 LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~ 215 (584)
T PRK14952 142 VEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRD 215 (584)
T ss_pred Hhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 984 44567888888888999999998 64 679999999999888888877655432 22235556666654 8899
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 478 LQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 478 L~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.++++.+.... +...|+.+++...
T Consensus 216 aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 216 TLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 999988765332 2345777666554
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.2e-13 Score=154.95 Aligned_cols=208 Identities=22% Similarity=0.356 Sum_probs=145.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------eee-c
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------FSC-A 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i~i-s 334 (723)
..+.+|+||+|++++++.|.+.+.. .+.|+.+|||||+|+|||++|+++|+.+.+.- -.+ +
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 4567999999999999888876642 14577899999999999999999999875421 011 1
Q ss_pred hhhH--------HHH--HhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEF--------VEL--FVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~--------~~~--~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|.++ .+. ....+...++++.+.+... ...|++|||+|.+.. ...|.||..|+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naLLk~LE 144 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNALLKTLE 144 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHHHHHHH
Confidence 1111 000 0012334577777666432 235999999998832 36788999988
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++....++..++...+. ++..+..+++.+.| +.+++.
T Consensus 145 e--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al 218 (576)
T PRK14965 145 E--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSL 218 (576)
T ss_pred c--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567888888999999999998 65 578999999988888888776654432 23346778888876 888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+++..+.... + ..|+.+++...
T Consensus 219 ~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 219 STLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8887665432 2 34777776554
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.1e-13 Score=155.06 Aligned_cols=211 Identities=22% Similarity=0.324 Sum_probs=149.4
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee---eechhh
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---SCAASE 337 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i---~is~s~ 337 (723)
..+.+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.++-. .-.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 345678999999999999888877653 145678999999999999999999998765311 011211
Q ss_pred HHH---H----H--hh---hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 338 FVE---L----F--VG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 338 ~~~---~----~--~G---~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
+.. . + -+ .+...+|++.+.+.. ....|++|||+|.+.. ...+.||..|+.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc
Confidence 111 0 0 01 224457777777654 2346999999998832 368889998884
Q ss_pred CCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHhhCCCCCHHHHHH
Q 004921 402 FSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADLQN 480 (723)
Q Consensus 402 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d~dl~~La~~t~G~sgadL~~ 480 (723)
....+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++...+++..+....+.. +..+..++..+.| +.+++.+
T Consensus 145 --PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 145 --PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred --CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 34567888888889999999998 66 4799999999999988887765544432 2236677777775 8888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 481 LMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 481 lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
++..+.... ...|+.+++.+.+
T Consensus 219 lLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 219 IAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHhc----cCCCCHHHHHHHH
Confidence 888765432 2347877776643
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.8e-13 Score=146.37 Aligned_cols=210 Identities=19% Similarity=0.308 Sum_probs=141.2
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH---
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF--- 338 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~--- 338 (723)
+..+.+|+|++|++.+++.+.+.+.. .+.|+++|||||||+|||++|+++|+.+..+.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 45568999999999998777766542 1456789999999999999999999987543211111000
Q ss_pred ---HHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 339 ---VELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 339 ---~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....++|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~I 142 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFI 142 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEE
Confidence 000011223567777776643 2347999999998732 2467777777642 3345666
Q ss_pred EeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 412 aaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
.+|+.+..+.+++.+ |+ ..+.+++|+.++...++...++...+. ++..+..++..+.| +.+.+.+.++.....+
T Consensus 143 l~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 143 LATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 677778888999988 54 468999999999988888776654432 23346777777765 7777777777655432
Q ss_pred HhCCCCCCHHHHHHHH
Q 004921 491 RRDLKEISKDEISDAL 506 (723)
Q Consensus 491 r~~~~~I~~edl~~Al 506 (723)
+.. |+.+++.+.+
T Consensus 218 --~~~-it~~~v~~~~ 230 (367)
T PRK14970 218 --GKN-ITRQAVTENL 230 (367)
T ss_pred --CCC-CCHHHHHHHh
Confidence 222 8877776654
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=5.4e-13 Score=146.11 Aligned_cols=175 Identities=31% Similarity=0.478 Sum_probs=125.6
Q ss_pred cccchHhHHHHHHHHHH-hcCchhhhhh-CCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-HHhh-hh
Q 004921 271 VAGADQAKLELQEVVDF-LKNPDKYTAL-GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVG-VG 346 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~-l~~~~~~~~~-g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~~~G-~~ 346 (723)
|+|++++|+.+...+.. ++.......+ ....|+++||+||||||||++|+++|+.++.||+.+++..+.+ .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 79999999998766553 2221111111 1235789999999999999999999999999999999887764 4666 34
Q ss_pred hhHHHHHHHHHH--------------------------------------------------------------------
Q 004921 347 ASRVRDLFEKAK-------------------------------------------------------------------- 358 (723)
Q Consensus 347 ~~~vr~lF~~A~-------------------------------------------------------------------- 358 (723)
+..++.+|+.|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 555555555540
Q ss_pred -----------------------------------------------------------------------cCCCeEEEE
Q 004921 359 -----------------------------------------------------------------------SKAPCIVFI 367 (723)
Q Consensus 359 -----------------------------------------------------------------------~~aP~ILfI 367 (723)
...-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred cCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEEEeeC----CCCCCCccccCCCCcccccc
Q 004921 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRFDRQVT 435 (723)
Q Consensus 368 DEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlrpgRfd~~I~ 435 (723)
||||.++.+..+ .+.+-....++..||..++|-. ...++++|++-. .|+.|=|.|. |||..++.
T Consensus 254 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 329 (441)
T TIGR00390 254 DEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVE 329 (441)
T ss_pred EchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999876422 2233345568899999998742 245688887754 3555667776 49999999
Q ss_pred cCCCCHHHHHHHHH
Q 004921 436 VDRPDVAGRVKILQ 449 (723)
Q Consensus 436 v~~Pd~~~R~~Il~ 449 (723)
+..++.++..+||.
T Consensus 330 L~~L~~edL~rILt 343 (441)
T TIGR00390 330 LQALTTDDFERILT 343 (441)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999988883
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=149.11 Aligned_cols=210 Identities=19% Similarity=0.287 Sum_probs=144.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceee-e
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFS-C 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~-i 333 (723)
...+.+|+|++|++.+.+.|+..+.. .+.++.+|||||+|+|||++|+.+|+.+++ |+-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567999999999999888776643 134567899999999999999999998753 1111 1
Q ss_pred chhhHHH-----HH-----hhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVE-----LF-----VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~-----~~-----~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|..+.. .+ ...+...++.+.+.+.. ....|++|||+|.+.. ...+.|+..+
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~L 143 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTL 143 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHH
Confidence 1111111 00 01223345666555543 3347999999998832 2567888888
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d~dl~~La~~t~G~sgadL 478 (723)
+.. ...+++|.+|+.++.+.+++.+ |+ ..+.|.+|+.++...+++.+++...+.. +..+..++..+.| +.+++
T Consensus 144 Eep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 144 EEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred hcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 743 3455666677778888888888 65 3789999999999999998877655432 2335677777765 78888
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.++++.+... +...++.+++.+++
T Consensus 218 l~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 218 ASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 8888877543 23468888877754
No 113
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.47 E-value=5.2e-13 Score=140.66 Aligned_cols=206 Identities=28% Similarity=0.442 Sum_probs=133.1
Q ss_pred CccccccccchHhHHHHHHHHH-HhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc---eeeechhhHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEFVE 340 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~-~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p---~i~is~s~~~~ 340 (723)
+-+++|.+|++++..+ .-++. .++.. +. .+++||||||||||+||+.|+....-+ |+.+++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq~--------~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQN--------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHcC--------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 3579999999887654 22222 22221 12 258999999999999999999988666 78777632
Q ss_pred HHhhhhhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 341 LFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.....+|++|+++++ ....|||||||+.+-... +..||-..+ ++.|++|++|.
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ--------------QD~fLP~VE----~G~I~lIGATT 258 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ--------------QDTFLPHVE----NGDITLIGATT 258 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh--------------hhcccceec----cCceEEEeccc
Confidence 334678899999875 345799999999984422 122333332 56677887664
Q ss_pred -CCC-CCCccccCCCCcccccccCCCCHHHHHHHHHHHhc------C--CCCCc------cccHHHHHhhCCCCCHHHHH
Q 004921 416 -RPD-VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR------G--KALAK------DVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 416 -~p~-~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~------~--~~l~~------d~dl~~La~~t~G~sgadL~ 479 (723)
.|. .|..+|++++ +++.+.....+....||..-.. + ..+.. +--++.++..+.|-..+.|
T Consensus 259 ENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL- 334 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL- 334 (554)
T ss_pred CCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH-
Confidence 454 5899999944 4688888888888888886432 1 11211 1125667777777333333
Q ss_pred HHHHHHH-HHHHHhC---CCCCCHHHHHHHHHHH
Q 004921 480 NLMNEAA-ILAARRD---LKEISKDEISDALERI 509 (723)
Q Consensus 480 ~lv~~A~-~~A~r~~---~~~I~~edl~~Al~~~ 509 (723)
|.++.++ +...|.+ ...++.+|+.+.+.+-
T Consensus 335 N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 3333332 2233333 3468899999998764
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.47 E-value=1.7e-12 Score=150.64 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=138.4
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHhc----------CCceeeechh
Q 004921 269 ADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAAS 336 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~g-vLL~GPpGtGKT~LAralA~e~----------~~p~i~is~s 336 (723)
+.|.|.++..++|..++.. +.. ..|.+ ++|+|+||||||++++.+.+++ .+.+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4455666555555554443 221 22434 5699999999999999997765 2557889985
Q ss_pred hHHHH----------Hhh-------hhhhHHHHHHHHHH--cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHH
Q 004921 337 EFVEL----------FVG-------VGASRVRDLFEKAK--SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (723)
Q Consensus 337 ~~~~~----------~~G-------~~~~~vr~lF~~A~--~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~ 397 (723)
.+... +.+ .....+..+|.... .....||+|||||.|..+ .+.++..|+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 43211 101 11234556666552 234579999999999642 1345666666
Q ss_pred hhcCCCCCCceEEEEeeCC---CCCCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcCCC-CCccccHHHHHhhCCC
Q 004921 398 EMDGFSGNSGVIVLAATNR---PDVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRGKA-LAKDVDFEKISRRTPG 472 (723)
Q Consensus 398 ~ld~~~~~~~ViVIaaTN~---p~~LD~aLlrpgRfd~-~I~v~~Pd~~~R~~Il~~~l~~~~-l~~d~dl~~La~~t~G 472 (723)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... .-.+..+..+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 533 23457899999996 4567888888 5543 588899999999999998887431 1223235566663332
Q ss_pred --CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 473 --FTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 473 --~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
...+....+|+.|+.. ++...|+.+|+.+|+.++..
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 2455556666666653 34457999999999877643
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=99.47 E-value=2e-12 Score=134.01 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=124.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~ 378 (723)
.+.++|+||+|+|||+|++++++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+..+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC--
Confidence 3679999999999999999998754 6788889988876531 1223333322 59999999987432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC---CCccccCCCCc--ccccccCCCCHHHHHHHHHHHhc
Q 004921 379 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV---LDSALLRPGRF--DRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 379 ~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~---LD~aLlrpgRf--d~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
.. ....|+..++.+...+..++++++..|.. +.+.|++ || ...+.+..|+.++|.++++.+..
T Consensus 113 -------~~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 113 -------AD---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -------hH---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 11 22334444444444556677777776653 4688888 76 46788899999999999996654
Q ss_pred CCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 454 GKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 454 ~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
...+. ++.-++.|+++..+ +.+.+.++++..... ....++.||...+.+++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~-~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA-SLQAQRKLTIPFLKETL 232 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HHHcCCcCCHHHHHHHh
Confidence 43332 23346778888876 999999999987643 33444678988887775
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.6e-12 Score=148.07 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=142.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeee-
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSC- 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~i- 333 (723)
...+.+|+||+|++.+++.|+..+.. .+.|+.+|||||+|+|||++|+++|+.+.+ |...+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45568999999999999888877642 145777899999999999999999998632 11111
Q ss_pred chhhHHHH-----Hh-----hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVEL-----FV-----GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~~-----~~-----G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|..+.+. +. ..+...++++.+.+.. ....|++|||+|.+.. ..+|.||..|
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~--------------~A~NALLK~L 141 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK--------------EAFNALLKTL 141 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHHHHHH
Confidence 11111000 00 0123456666655432 1235999999998832 3678889998
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+.. ...+.+|.+|+.+..|.+.+++ |. .+++|.+++.++..+.++..++..++. .+..+..+++...| +.+++
T Consensus 142 EEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~a 215 (535)
T PRK08451 142 EEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDT 215 (535)
T ss_pred hhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 854 3446677777888999999999 64 588999999999888888777654432 23346777777766 89999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
.+++..+...+ ...|+.+++.+
T Consensus 216 lnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 216 LTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HHHHHHHHHhc----CCCCCHHHHHH
Confidence 99988776543 23456555543
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=151.43 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=148.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee--------
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-------- 333 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i-------- 333 (723)
++.+.+|+||+|++.+++.|...+.. .+.|.++||+||+|+|||++|+++|+.+.+.....
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45567999999999999888876652 25678899999999999999999999886532111
Q ss_pred -----chhhHHHH-H---------hhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 334 -----AASEFVEL-F---------VGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 334 -----s~s~~~~~-~---------~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
+|..+.+. + ...+...+|++.+.+... ...|++|||+|.+.. ...|.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~na 151 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNA 151 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHH
Confidence 11111110 0 012345677887776532 246999999998832 35788
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGF 473 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~ 473 (723)
||..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+++....-+ ..+..|++.+.|
T Consensus 152 LLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888843 3456777777888888888888 65 57999999999999888887765544322 345667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+.+++.+++..+... +...|+.+++.+.+
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 899999988876543 23468888887654
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.46 E-value=5.6e-13 Score=146.04 Aligned_cols=175 Identities=33% Similarity=0.468 Sum_probs=128.1
Q ss_pred cccchHhHHHHHHHHHH-hcCchhhhhhC-CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-HHhh-hh
Q 004921 271 VAGADQAKLELQEVVDF-LKNPDKYTALG-AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVG-VG 346 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~-l~~~~~~~~~g-~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~~~G-~~ 346 (723)
|+|++++|+.+...+.. ++.......+. ...|+++||+||||||||++|+++|+.++.||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999998776642 22111101111 123689999999999999999999999999999999998886 5777 44
Q ss_pred hhHHHHHHHHHH--------------------------------------------------------------------
Q 004921 347 ASRVRDLFEKAK-------------------------------------------------------------------- 358 (723)
Q Consensus 347 ~~~vr~lF~~A~-------------------------------------------------------------------- 358 (723)
+..++++|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566666666661
Q ss_pred --c--------------------------------------------------------------------CCCeEEEEc
Q 004921 359 --S--------------------------------------------------------------------KAPCIVFID 368 (723)
Q Consensus 359 --~--------------------------------------------------------------------~aP~ILfID 368 (723)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 123599999
Q ss_pred CccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEEEeeC----CCCCCCccccCCCCccccccc
Q 004921 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 369 EiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlrpgRfd~~I~v 436 (723)
|||.++.+.++ .+.+-....++..||..++|-. ..+++++|++-. .|+.|-|.|.- ||..++.+
T Consensus 257 EiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 257 EIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred cchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999876432 2333445668899999998842 245678887654 35667778865 99999999
Q ss_pred CCCCHHHHHHHHH
Q 004921 437 DRPDVAGRVKILQ 449 (723)
Q Consensus 437 ~~Pd~~~R~~Il~ 449 (723)
..++.++..+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999988884
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=8.3e-13 Score=151.26 Aligned_cols=210 Identities=17% Similarity=0.251 Sum_probs=143.6
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-----eeech
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-----FSCAA 335 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-----i~is~ 335 (723)
....+.+|+|++|++.+++.|.+.+.. .+.|+++||+||||+|||++|+++|+.+.+.- .+-.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345668999999999999888765532 24567899999999999999999999874310 01111
Q ss_pred hhHHH-------------HHhhhhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 336 SEFVE-------------LFVGVGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 336 s~~~~-------------~~~G~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
..+.. .....+...+|.+.+.+... ...|++|||+|.+.. ...+.|+..
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKt 142 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKT 142 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHH
Confidence 11100 00012234567776665432 235999999998832 256788888
Q ss_pred hcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHH
Q 004921 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgad 477 (723)
|+. ....+++|.+|+.+..|.+.+++ |+ ..+.|.+|+.++....++..+...+.. ++..+..++..+.| +.++
T Consensus 143 LEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~ 216 (605)
T PRK05896 143 LEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRD 216 (605)
T ss_pred HHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 884 34467888888889999999998 65 479999999999998888777554321 22346677777765 8888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 478 LQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 478 L~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.++++.+.... + ..|+.+++.+.
T Consensus 217 AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 217 GLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 888888754332 2 23887776664
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.3e-12 Score=145.46 Aligned_cols=214 Identities=18% Similarity=0.274 Sum_probs=142.8
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee----------
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---------- 331 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i---------- 331 (723)
...+.+|++|+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 34567999999999999888776542 256778999999999999999999998865210
Q ss_pred ee------chhhHHH-------HHhh---hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHH
Q 004921 332 SC------AASEFVE-------LFVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT 391 (723)
Q Consensus 332 ~i------s~s~~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ 391 (723)
.- +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.. ..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------~~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------AA 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------HH
Confidence 00 1111110 0111 123456665555532 2236999999998832 25
Q ss_pred HHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhC
Q 004921 392 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRT 470 (723)
Q Consensus 392 ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t 470 (723)
.+.|+..++.. ....++|.+|+.+..+-+.+.+ |+ ..+++.+++.++..+.++..++..... .+..+..++..+
T Consensus 144 ~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 66788887743 3345666666777888888887 55 478999999998888888776544332 233467777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 004921 471 PGFTGADLQNLMNEAAILAAR-RDLKEISKDEISDAL 506 (723)
Q Consensus 471 ~G~sgadL~~lv~~A~~~A~r-~~~~~I~~edl~~Al 506 (723)
.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 65 788888888876555432 234578888877655
No 121
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.45 E-value=2.9e-12 Score=135.01 Aligned_cols=184 Identities=23% Similarity=0.270 Sum_probs=114.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechh------hHHHHHhhhhhhHH-H--------------------HHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS------EFVELFVGVGASRV-R--------------------DLFE 355 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s------~~~~~~~G~~~~~v-r--------------------~lF~ 355 (723)
+.+||+||||||||++|+++|...|.|++.++|. ++...+.+.....+ . .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4699999999999999999999999999998764 33333222111111 1 1122
Q ss_pred HHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------------CCCceEEEEeeCCCC---
Q 004921 356 KAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------------GNSGVIVLAATNRPD--- 418 (723)
Q Consensus 356 ~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------------~~~~ViVIaaTN~p~--- 418 (723)
.++ .+.+|+|||||.+.+ . +.+.|+..|+.-. .+.++.||+|+|...
T Consensus 102 A~~--~g~~lllDEi~r~~~-----------~---~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSKP-----------E---TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHH--cCCEEEEcchhhCCH-----------H---HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 222 236999999998732 2 4444555443211 123678999999763
Q ss_pred --CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHhh------CCCCCHHHHHHHHHHHHHH
Q 004921 419 --VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV--DFEKISRR------TPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 419 --~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~--dl~~La~~------t~G~sgadL~~lv~~A~~~ 488 (723)
.++++|++ || ..+.++.|+.++..+|++.+.. +.... .+-.++.. ....+.+. .+.-+...
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~~r~---~i~~~~~~ 236 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSGLRA---SLMIAEVA 236 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCcHHH---HHHHHHHH
Confidence 57899999 88 6889999999999999998752 22111 01111111 11233333 33333333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc
Q 004921 489 AARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
+.......++.+|+.+.+..++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHhc
Confidence 44445667888888888777654
No 122
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.4e-12 Score=144.57 Aligned_cols=222 Identities=24% Similarity=0.324 Sum_probs=134.9
Q ss_pred cccc-cccchHhHHHHHHHHHH-hcCchh----hhhhCCCC-CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 267 TFAD-VAGADQAKLELQEVVDF-LKNPDK----YTALGAKI-PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 267 ~f~d-v~G~~~~k~~L~eiv~~-l~~~~~----~~~~g~~~-p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
.|++ |+|++++++.+...+.. ++.-.. ....+... +.++||+||||||||++|+++|..++.||..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 4555 69999999988776632 111100 00001112 35899999999999999999999999999999988765
Q ss_pred H-HHhhhh-hhHHHHHHHHH----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC---------
Q 004921 340 E-LFVGVG-ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--------- 404 (723)
Q Consensus 340 ~-~~~G~~-~~~vr~lF~~A----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~--------- 404 (723)
. .|+|.. ...+..++..+ ....++||||||||.+.+++.......+-....+++.||+.|+|...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 466654 33344444322 23457899999999998754322111111223577788888875421
Q ss_pred --CCceEEEEeeCCCC--------------------------------------------------CCCccccCCCCccc
Q 004921 405 --NSGVIVLAATNRPD--------------------------------------------------VLDSALLRPGRFDR 432 (723)
Q Consensus 405 --~~~ViVIaaTN~p~--------------------------------------------------~LD~aLlrpgRfd~ 432 (723)
..+.++|.|+|-.- .+.|+|+ ||+|.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCe
Confidence 12457777777510 0224444 48999
Q ss_pred ccccCCCCHHHHHHHHHHH----hc---------CCCCC-ccccHHHHHhh--CCCCCHHHHHHHHHHHHHHHH
Q 004921 433 QVTVDRPDVAGRVKILQVH----SR---------GKALA-KDVDFEKISRR--TPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 433 ~I~v~~Pd~~~R~~Il~~~----l~---------~~~l~-~d~dl~~La~~--t~G~sgadL~~lv~~A~~~A~ 490 (723)
++.|.+.+.++..+|+... ++ +..+. .+.-+..|++. ...+-.+.|+.+++....-..
T Consensus 312 Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 9999999999998888642 11 11111 11123455554 234455666666666554433
No 123
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.44 E-value=1.3e-12 Score=133.93 Aligned_cols=170 Identities=24% Similarity=0.373 Sum_probs=113.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhHHHHHhhhhh-hHHHHHHHHHHcCCCeEEEEcCccchhhh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVELFVGVGA-SRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~~~~~~G~~~-~~vr~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
..++||||+|+|||+|.+|++++. +..++++++.+|...+..... ..+.++.+..+ ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 358999999999999999998864 678999999999876654322 22333333333 3469999999998542
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC---CCccccCCCCccc--ccccCCCCHHHHHHHHHHH
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV---LDSALLRPGRFDR--QVTVDRPDVAGRVKILQVH 451 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~---LD~aLlrpgRfd~--~I~v~~Pd~~~R~~Il~~~ 451 (723)
..+...|...++.+...++.+|+++...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 2244455555555544566677777777764 5677877 6654 8899999999999999988
Q ss_pred hcCCCCCccc-cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 452 SRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 452 l~~~~l~~d~-dl~~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
+....+.-+. -...|++...+ +.++|..+++.....+
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 7655544222 25677787765 8999999988765443
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.4e-12 Score=148.55 Aligned_cols=209 Identities=19% Similarity=0.268 Sum_probs=144.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeee-c
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-A 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~i-s 334 (723)
..+.+|+||+|++.+++.|+..+.. .+.++.+|||||||+|||++|+++|+.+.++ .-.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 4567999999999999888776642 1456789999999999999999999987642 1111 1
Q ss_pred hhhHHHH-------Hhh---hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 ASEFVEL-------FVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~s~~~~~-------~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
|-.+... +.| .+...++++.+.+.. ....|++|||+|.+. ...+|.||..++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~LE 144 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIE 144 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhhc
Confidence 1111100 011 122355555544432 344699999999883 236788998888
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ....+++|.+|+.+..|.+++++ |+. .+.|.+++.++..++++..++...+. .+..+..|++...| +.+++.
T Consensus 145 e--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~al 218 (563)
T PRK06647 145 E--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred c--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567888888888889999998 663 68999999999998888777544433 23346677777766 888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+++..+...+ ...++.+++.+.+
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8888765432 2457777766643
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.44 E-value=2e-12 Score=132.05 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=124.7
Q ss_pred CCCccccccccch---HhHHHHHHHHHHhcCchhhhhhCCCCC--cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 263 ETGVTFADVAGAD---QAKLELQEVVDFLKNPDKYTALGAKIP--KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~G~~---~~k~~L~eiv~~l~~~~~~~~~g~~~p--~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
.+..+|++++--+ .+...++++.+ .| + ..| +.++||||||||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3456899975443 23333333322 11 1 123 679999999999999999999988764332 111
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
.. .+.+ + ...+|+|||||.+- . . .|...++.+...++.++|+++..|
T Consensus 78 ~~-----------~~~~---~--~~d~lliDdi~~~~----------~----~---~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 78 FN-----------EEIL---E--KYNAFIIEDIENWQ----------E----P---ALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred hc-----------hhHH---h--cCCEEEEeccccch----------H----H---HHHHHHHHHHhcCCEEEEEcCCCc
Confidence 10 0111 1 23699999999541 0 1 222222223334567888888777
Q ss_pred CC--CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 418 DV--LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 418 ~~--LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
.. + ++|++ |+. .++.+..|+.+.+..+++.++....+. ++...+.|+.+..+ +.+.+.++++.....+..
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~- 199 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI- 199 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-
Confidence 64 5 78888 664 478999999999999998887644332 23346788888876 999999999986543433
Q ss_pred CCCCCCHHHHHHHH
Q 004921 493 DLKEISKDEISDAL 506 (723)
Q Consensus 493 ~~~~I~~edl~~Al 506 (723)
..+.||...+.+++
T Consensus 200 ~~~~it~~~~~~~l 213 (214)
T PRK06620 200 SKRKITISLVKEVL 213 (214)
T ss_pred cCCCCCHHHHHHHh
Confidence 44678988887765
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.8e-12 Score=144.71 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=140.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce--------e-e
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--------F-S 332 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~--------i-~ 332 (723)
...+.+|+||+|++.+++.|+..+.. .+.|+.+|||||||+|||++|+++|+.+.+.- . +
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 34568999999999999887776643 14577899999999999999999999874421 0 0
Q ss_pred echhhHHHH-------Hhh---hhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 333 CAASEFVEL-------FVG---VGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 333 is~s~~~~~-------~~G---~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
.+|..+... +.| .+...++.+-+... .....|++|||+|.+.. ...+.|+..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~LLk~ 144 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSLLKT 144 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHHHHH
Confidence 111111100 011 11233444333222 23457999999998832 256888888
Q ss_pred hcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHH
Q 004921 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgad 477 (723)
|+.. ...+++|.+||.+..|.+.+++ |+ ..++|..++.++..+.++..+++.+.. ++..+..|+..+.| +.++
T Consensus 145 lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~ 218 (451)
T PRK06305 145 LEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRD 218 (451)
T ss_pred hhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8853 3466777788888899999998 65 468999999999888888776554432 23346778888765 6777
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 478 LQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 478 L~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
+.+.++..... .+ ..|+.+++.+++
T Consensus 219 a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 219 AESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 77776654432 22 348888776654
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.44 E-value=4.4e-12 Score=136.50 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=135.9
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----Cceee
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFS 332 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-----~p~i~ 332 (723)
.|...+.+.+|+|++|.+++++.|+..+.. . .. .+++|+||||||||++++++++++. .+++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 455566778999999999998887776532 1 11 2489999999999999999999863 34555
Q ss_pred echhhHHHHHhhhhhhHHHHHHHH-HHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 004921 333 CAASEFVELFVGVGASRVRDLFEK-AKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (723)
Q Consensus 333 is~s~~~~~~~G~~~~~vr~lF~~-A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~ 406 (723)
+++++-.+ ...+++.+.. +.. ..+.+|+|||+|.+... ..+.|+..++.....
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~~~- 132 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYSQN- 132 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCCCC-
Confidence 54432111 1112222211 111 23569999999988321 234566666654433
Q ss_pred ceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
..+|.++|.+..+.+.+.+ |+. .+.+++|+.++...+++.+++...+. .+..+..++..+.| +.+.+.+.++.+
T Consensus 133 -~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 133 -TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred -CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3555667777777778887 654 58999999999999999888654432 23347778887765 666666666554
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 004921 486 AILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 486 ~~~A~r~~~~~I~~edl~~Al 506 (723)
... ...|+.+++..++
T Consensus 208 ~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 208 AAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred HHc-----CCCCCHHHHHHHh
Confidence 322 3579999988775
No 128
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.42 E-value=6.9e-12 Score=137.68 Aligned_cols=227 Identities=20% Similarity=0.318 Sum_probs=157.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
.+..+|++.+.-+.-.....-...+-..|.. .-..++||||.|.|||+|++|++++. +..+++++..+
T Consensus 81 ~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~ 153 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED 153 (408)
T ss_pred CCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH
Confidence 4567899976444433333222333222211 23459999999999999999998876 34689999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
|...++......-.+-|+.-. +-.+++||+|+.+..+.. +...|...++.+...++.+|+.+...|
T Consensus 154 f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------------~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 154 FTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------------TQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred HHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------------HHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 988776554444444566555 446999999999965421 233334444333345556777777777
Q ss_pred CC---CCccccCCCCccc--ccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 004921 418 DV---LDSALLRPGRFDR--QVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAAR 491 (723)
Q Consensus 418 ~~---LD~aLlrpgRfd~--~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 491 (723)
.. +.+.|.+ ||.. .+.+.+||.+.|..||+.......+. ++.-...++.+... +.+++..+++.....+..
T Consensus 220 ~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~ 296 (408)
T COG0593 220 KELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALF 296 (408)
T ss_pred hhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHh
Confidence 75 5588888 7764 77888999999999999876554443 22235677777764 899999999998877766
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCC
Q 004921 492 RDLKEISKDEISDALERIIAGPE 514 (723)
Q Consensus 492 ~~~~~I~~edl~~Al~~~~~g~~ 514 (723)
.+ ..||.+.+.+++.......+
T Consensus 297 ~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 297 TK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred cC-ccCcHHHHHHHHHHhhcccc
Confidence 55 48999999999988776544
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.41 E-value=6.7e-12 Score=128.50 Aligned_cols=190 Identities=20% Similarity=0.353 Sum_probs=132.6
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
..+.+++++|++..|+.|.+-... +.. .+..++||+|++|||||+++|++..+. |..++.+...++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 368999999999999988765543 432 456789999999999999999998865 7888888876654
Q ss_pred HHHhhhhhhHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC--CCCCceEEEEeeCC
Q 004921 340 ELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SGNSGVIVLAATNR 416 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~--~~~~~ViVIaaTN~ 416 (723)
. +..+++..+. ..+-|||+|++. + . +.......|-..|||- ....+|++.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e-----------~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F-E-----------EGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C-C-----------CCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 3 4455555543 345799999963 2 1 1122345566666665 33567999999998
Q ss_pred CCCCCccccC---------------------CCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccH----HHHHhhC
Q 004921 417 PDVLDSALLR---------------------PGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDF----EKISRRT 470 (723)
Q Consensus 417 p~~LD~aLlr---------------------pgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl----~~La~~t 470 (723)
-..+.+.... ..||...+.|.+|+.++-.+|++.+++...+.-+ .++ ...+..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 5543332211 1399999999999999999999999976655433 122 2334444
Q ss_pred CCCCHHHHHHHHHH
Q 004921 471 PGFTGADLQNLMNE 484 (723)
Q Consensus 471 ~G~sgadL~~lv~~ 484 (723)
.|.||+-..+.++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 56777766666653
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.5e-12 Score=147.05 Aligned_cols=206 Identities=19% Similarity=0.284 Sum_probs=140.0
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee-------ec
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-------CA 334 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~-------is 334 (723)
...+.+|++++|++.+++.|++.+..- +.+.++||+||+|+|||++|+++|+.+++.... -.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 345679999999999998888777641 345679999999999999999999988652110 01
Q ss_pred hhhHH-------------HHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHH
Q 004921 335 ASEFV-------------ELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (723)
Q Consensus 335 ~s~~~-------------~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~ 397 (723)
|..+. +.....+...+|++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST--------------AAFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------------HHHHHHHH
Confidence 11100 00112344578888877653 2236999999999832 36788999
Q ss_pred hhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHH
Q 004921 398 EMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGA 476 (723)
Q Consensus 398 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sga 476 (723)
.|+. ....+++|.+|+.++.+-+.+++ |+ ..+.|..++.++....+...+++..+. .+..+..++..+.| +.+
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr 217 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLR 217 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34557778888888888899988 65 568888888888777776665543322 22336777777776 667
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 477 DLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 477 dL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
++.++++..... . ..|+.+++.
T Consensus 218 ~A~~lLeklsL~---~--~~It~e~V~ 239 (620)
T PRK14948 218 DAESLLDQLSLL---P--GPITPEAVW 239 (620)
T ss_pred HHHHHHHHHHhc---c--CCCCHHHHH
Confidence 777777754332 1 246655544
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=3.1e-12 Score=144.14 Aligned_cols=195 Identities=25% Similarity=0.382 Sum_probs=149.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeeec-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSCA- 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~is- 334 (723)
+.+.+|+|++|++.+...|.+.+..- +.+.+.||+||.|||||++||.+|+.+++. +..+.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 45678999999999999999887753 345678999999999999999999987653 11111
Q ss_pred h--------hhHHHH--HhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 335 A--------SEFVEL--FVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 335 ~--------s~~~~~--~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
| .++++. -...+...+|++.+.+.- ....|++|||+|-+. .+..|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccc
Confidence 1 111111 112345677888777652 334699999999883 458999999998
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcccc-HHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~d-l~~La~~t~G~sgadL~ 479 (723)
++...|++|.+|..++.+++.+++ |+ .++.|..-+.++....|...+.+..+..+.+ +..+++...| |.+|..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 567789999999999999999999 55 5688888999999999998887777654443 6777777776 999999
Q ss_pred HHHHHHHHH
Q 004921 480 NLMNEAAIL 488 (723)
Q Consensus 480 ~lv~~A~~~ 488 (723)
+++..+...
T Consensus 219 slLDq~i~~ 227 (515)
T COG2812 219 SLLDQAIAF 227 (515)
T ss_pred HHHHHHHHc
Confidence 999998654
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=3.8e-12 Score=150.98 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=116.1
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCC-cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-----HHhh
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-----LFVG 344 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p-~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-----~~~G 344 (723)
|+|++++++.|.+.+...+..-. ....| ..+||+||||||||.+|+++|..++.+++.++++++.+ .+.|
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 79999999999888775322100 01224 36999999999999999999999999999999998754 2333
Q ss_pred hhhhH-----HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCceEE
Q 004921 345 VGASR-----VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVIV 410 (723)
Q Consensus 345 ~~~~~-----vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~~ViV 410 (723)
..... -..+.+..+....+||||||||.+.+ .+.+.|++.||.-. .-.++++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 21111 11233334455568999999999843 36777777776321 1136789
Q ss_pred EEeeCCC-------------------------CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc
Q 004921 411 LAATNRP-------------------------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 411 IaaTN~p-------------------------~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
|+|||.- ..+.|.|+. |+|.+|.|++.+.++..+|+...++
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999932 125577777 9999999999999999999987663
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.39 E-value=2.2e-12 Score=139.64 Aligned_cols=219 Identities=22% Similarity=0.326 Sum_probs=133.9
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------CCceeee--c
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSC--A 334 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~i--s 334 (723)
.+..|++|+|++++++.|.-..- ++. -.++||+||||||||++|+++++-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 35789999999999877653211 110 1469999999999999999999976 3322111 1
Q ss_pred h-hhH---------------HHHHhhhhhhHHHH--HHHHH-----------H--cCCCeEEEEcCccchhhhcCCCCCC
Q 004921 335 A-SEF---------------VELFVGVGASRVRD--LFEKA-----------K--SKAPCIVFIDEIDAVGRQRGAGLGG 383 (723)
Q Consensus 335 ~-s~~---------------~~~~~G~~~~~vr~--lF~~A-----------~--~~aP~ILfIDEiD~l~~~r~~~~~~ 383 (723)
+ .++ .....+.++.++-. .|+.+ . .....+||+||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 000 00000101110000 01111 0 01125999999998843
Q ss_pred CChHHHHHHHHHHHhhcCCC-----------CCCceEEEEeeCCCC-CCCccccCCCCcccccccCCCCH-HHHHHHHHH
Q 004921 384 GNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPDV-AGRVKILQV 450 (723)
Q Consensus 384 ~~~~~~~~ln~LL~~ld~~~-----------~~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~Pd~-~~R~~Il~~ 450 (723)
.+++.|++.|+.-. ....+++++++|..+ .++++++. ||...+.++.|.. ++|.+|++.
T Consensus 143 ------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 143 ------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 35666666664321 234688999988755 58999999 9999999998866 899999986
Q ss_pred HhcCCC----CC-----------c----------cc-----c---HHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q 004921 451 HSRGKA----LA-----------K----------DV-----D---FEKISRRTP-GFTGADLQNLMNEAAILAARRDLKE 496 (723)
Q Consensus 451 ~l~~~~----l~-----------~----------d~-----d---l~~La~~t~-G~sgadL~~lv~~A~~~A~r~~~~~ 496 (723)
...... +. . ++ . +..++..+. .-.-++|. +++.|...|+.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 432110 00 0 00 0 123333333 12345555 8899999999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 004921 497 ISKDEISDALERIIA 511 (723)
Q Consensus 497 I~~edl~~Al~~~~~ 511 (723)
|+.+|+..+..-++.
T Consensus 294 V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 294 VGRSHLRSVATMALS 308 (334)
T ss_pred eCHHHHHHHHHHhhh
Confidence 999999887755543
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.6e-12 Score=144.83 Aligned_cols=213 Identities=18% Similarity=0.292 Sum_probs=142.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee-----------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF----------- 331 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i----------- 331 (723)
..+.+|++|+|++.+++.|++.+.. .+.+.++||+||+|||||++|+++|+.+.+.--
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 4567999999999999888775532 256778999999999999999999998866210
Q ss_pred e-----echhhHHH-------HHhh---hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHH
Q 004921 332 S-----CAASEFVE-------LFVG---VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTI 392 (723)
Q Consensus 332 ~-----is~s~~~~-------~~~G---~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~l 392 (723)
. -+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.. ...
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------~a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------AAF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------------HHH
Confidence 0 01111110 0111 123456666555532 2346999999998832 357
Q ss_pred HHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCC
Q 004921 393 NQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTP 471 (723)
Q Consensus 393 n~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~ 471 (723)
|.||..|+... ..+++|.+|+.+..|-+.+++ |. ..++|..++.++....++..++..... ++..+..|+..+.
T Consensus 145 naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 78888888533 345666666777888888888 44 579999999998888887766543321 3334677788776
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 004921 472 GFTGADLQNLMNEAAILAAR-RDLKEISKDEISDAL 506 (723)
Q Consensus 472 G~sgadL~~lv~~A~~~A~r-~~~~~I~~edl~~Al 506 (723)
| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 777777777765544311 224568877776654
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.1e-11 Score=144.42 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=140.4
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee-----eec-h
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF-----SCA-A 335 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i-----~is-~ 335 (723)
...+.+|+||+|++.+++.|+..+..- +.++.+||+||||+|||++|+++|+.+++..- .++ |
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 345679999999999998887766531 34667899999999999999999998754221 111 1
Q ss_pred h---hHHHH----H------hhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 336 S---EFVEL----F------VGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 336 s---~~~~~----~------~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
. .+... + ...+...++++.+.+.. ....||+|||+|.+.. ..++.||..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHHHHHH
Confidence 1 11100 0 01122345555544432 2346999999998832 357788888
Q ss_pred hcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHH
Q 004921 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGAD 477 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgad 477 (723)
|+... ..+++|.+++..+.+.+.+++ |+ ..+.|..++..+...+++..++...+. ++..+..|+..+.| +.++
T Consensus 144 LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred HhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 88543 446677777777888888887 55 468899999999888888776554432 22346777777766 8888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 478 LQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 478 L~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+.++..... ....|+.+++.+.
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 88888865432 2346888877654
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=7.9e-12 Score=149.39 Aligned_cols=161 Identities=25% Similarity=0.355 Sum_probs=116.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCc-ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH----
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPK-GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL---- 341 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~-gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~---- 341 (723)
.|+|++++++.+.+.+...+. |. ..|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~-------g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRA-------GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhc-------CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHH
Confidence 478888888887776664321 22 1244 48999999999999999999999999999999988652
Q ss_pred -Hhhhh-----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCC
Q 004921 342 -FVGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNS 406 (723)
Q Consensus 342 -~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~ 406 (723)
..|.. ......+.+..+....+||+|||||.+.+ .+.+.|++.||... .-.
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCC
Confidence 22221 11222344445556668999999998743 36777777776431 123
Q ss_pred ceEEEEeeCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhc
Q 004921 407 GVIVLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 407 ~ViVIaaTN~p~-------------------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
+.++|+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..++
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 578999998632 14566666 9999999999999999999987764
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.36 E-value=6e-12 Score=136.66 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=140.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------CCceeeec-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCA- 334 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~is- 334 (723)
.....|++|+|++++|..|.- .+.+|. ..|+||.||+|||||++||++++.+ +.||....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~---~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALIL---NVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHH---hccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 334689999999999876643 233331 3589999999999999999997755 23443100
Q ss_pred -----hhhHHHHH-------------------hhhhhhH------HHHHHHHHH---------cCCCeEEEEcCccchhh
Q 004921 335 -----ASEFVELF-------------------VGVGASR------VRDLFEKAK---------SKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 335 -----~s~~~~~~-------------------~G~~~~~------vr~lF~~A~---------~~aP~ILfIDEiD~l~~ 375 (723)
++++.... .|.++.+ +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 01111100 1111121 111222111 11235999999999843
Q ss_pred hcCCCCCCCChHHHHHHHHHHHhhcC---------C--CCCCceEEEEeeCCCC-CCCccccCCCCcccccccCCCC-HH
Q 004921 376 QRGAGLGGGNDEREQTINQLLTEMDG---------F--SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPD-VA 442 (723)
Q Consensus 376 ~r~~~~~~~~~~~~~~ln~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~Pd-~~ 442 (723)
. +++.|+..|+. . .....+++|++.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 159 ~--------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 H--------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred H--------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 2 45556666542 1 1234678888888665 59999999 999999999997 58
Q ss_pred HHHHHHHHHhcCC-------------------------------CCCccc-c-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 443 GRVKILQVHSRGK-------------------------------ALAKDV-D-FEKISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 443 ~R~~Il~~~l~~~-------------------------------~l~~d~-d-l~~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
.+.+|++...... .+++++ + +..++..+.--+++--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 9999998653210 000000 0 233344444346677778888888899
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcC
Q 004921 490 ARRDLKEISKDEISDALERIIAG 512 (723)
Q Consensus 490 ~r~~~~~I~~edl~~Al~~~~~g 512 (723)
+.+++..++.+|+..+..-++..
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998877654
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=2.8e-11 Score=141.50 Aligned_cols=213 Identities=23% Similarity=0.325 Sum_probs=132.5
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+.+|++++|++.+.+.+.+.+ .. ..+..++|+||||||||++|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 578999999999877654333 11 224579999999999999999998754 46789998
Q ss_pred hhhHH-------HHHhhhhhh----HHHHHHHH----------HHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHH
Q 004921 335 ASEFV-------ELFVGVGAS----RVRDLFEK----------AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTIN 393 (723)
Q Consensus 335 ~s~~~-------~~~~G~~~~----~vr~lF~~----------A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln 393 (723)
|..+. ..+.|.... ..+..+.. .......+|||||++.+... .+.
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~ 283 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQN 283 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------HHH
Confidence 86541 111121100 01111111 00123469999999988432 223
Q ss_pred HHHHhhcCC--------------------------CCCCceEEEE-eeCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 004921 394 QLLTEMDGF--------------------------SGNSGVIVLA-ATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (723)
Q Consensus 394 ~LL~~ld~~--------------------------~~~~~ViVIa-aTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~ 446 (723)
.|+..|+.- .....+++|+ +|+.++.++++|++ ||. .+.+++++.+++..
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 333333211 0122355555 45668889999988 886 57889999999999
Q ss_pred HHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHH
Q 004921 447 ILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--------DLKEISKDEISDALER 508 (723)
Q Consensus 447 Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~--------~~~~I~~edl~~Al~~ 508 (723)
|++..++..... .+.-+..|+..++ .++...+++..+...+..+ ....|+.+|+++++..
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999988754322 2223455666654 5666667776665444222 1236889999988754
No 139
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.35 E-value=2.4e-11 Score=128.25 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=78.1
Q ss_pred EEEEeeCC------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCH
Q 004921 409 IVLAATNR------------PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTG 475 (723)
Q Consensus 409 iVIaaTN~------------p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sg 475 (723)
++|.|||+ |.-|+..|+. |+ ..|...+.+.++.++|++...+...+. .+..++.|+..-..-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 67777886 5567778877 65 577888899999999999988665443 23346778877777788
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 476 ADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 476 adL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
+...+|+.-|...|.+++...+..+|+++|.+-.
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 8999999999999999999999999999997543
No 140
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=7.6e-12 Score=133.99 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=132.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH--HhhhhhhH----------HHHHHHHHHcCCCeEEEEcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVGVGASR----------VRDLFEKAKSKAPCIVFIDE 369 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~--~~G~~~~~----------vr~lF~~A~~~aP~ILfIDE 369 (723)
.+++||.||||||||++++.+|..++.|++.+++...... +.|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999998765543 34432110 1123344443 468999999
Q ss_pred ccchhhhcCCCCCCCChHHHHHHHHHHHh-----hc----CCCCCCceEEEEeeCCCC------------CCCccccCCC
Q 004921 370 IDAVGRQRGAGLGGGNDEREQTINQLLTE-----MD----GFSGNSGVIVLAATNRPD------------VLDSALLRPG 428 (723)
Q Consensus 370 iD~l~~~r~~~~~~~~~~~~~~ln~LL~~-----ld----~~~~~~~ViVIaaTN~p~------------~LD~aLlrpg 428 (723)
+|..-+ .....++.+|+. +. .+.....+.||+|.|..+ .++++++.
T Consensus 143 in~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 998732 334455666652 11 112345688999999864 36889999
Q ss_pred CcccccccCCCCHHHHHHHHHHHhcCCCCCc-c------ccHHHHHhh-------CCCCCHHHHHHHHHHHHHHHHHhCC
Q 004921 429 RFDRQVTVDRPDVAGRVKILQVHSRGKALAK-D------VDFEKISRR-------TPGFTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 429 Rfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d------~dl~~La~~-------t~G~sgadL~~lv~~A~~~A~r~~~ 494 (723)
||-.++.++.|+.++-.+|+.....+..-.. + +++....+. ..|+|++.+..+.+.+.+. +
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f----~- 284 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF----D- 284 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----C-
Confidence 9988889999999999999987654322000 0 111111121 2356777777776655432 1
Q ss_pred CCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhh
Q 004921 495 KEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGAL 541 (723)
Q Consensus 495 ~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~ 541 (723)
.++..|++..+... -++..+.++||.-..+.+.-
T Consensus 285 -----~~~~~a~~~~~~n~--------~~~~er~~~~e~~q~~f~~~ 318 (327)
T TIGR01650 285 -----HDIALAFRLTFLNK--------CDELERPTVAEFFQRAFGED 318 (327)
T ss_pred -----ccHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHcCCC
Confidence 25677777665421 12334567787655544433
No 141
>PRK09087 hypothetical protein; Validated
Probab=99.33 E-value=1.7e-11 Score=126.32 Aligned_cols=171 Identities=19% Similarity=0.200 Sum_probs=117.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~ 383 (723)
.++|+||+|+|||+|+++++...++. +++..++...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 48999999999999999999887665 444434333221 11111 3899999997621
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC
Q 004921 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA 458 (723)
Q Consensus 384 ~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~ 458 (723)
.. ..|+..++.....+..+||+++..|.. ..+.|++ ||. ..+.+..|+.++|.++++.+++...+.
T Consensus 102 ~~-------~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 DE-------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred CH-------HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 123333333333455677777766653 3678888 664 789999999999999999988765443
Q ss_pred -ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 459 -KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 459 -~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
++..+..|+++..+ +.+.+..+++.....+... .+.+|...+.+++...
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 23346788888875 8888888887775555444 4679999999988754
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.8e-11 Score=140.04 Aligned_cols=208 Identities=21% Similarity=0.326 Sum_probs=140.4
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee--------e-
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS--------C- 333 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~--------i- 333 (723)
+.+.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|+.+.+.... +
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 4557999999999999888776642 2467789999999999999999999987532110 0
Q ss_pred chhhHHHH-------Hhh---hhhhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 334 AASEFVEL-------FVG---VGASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 334 s~s~~~~~-------~~G---~~~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
+|..+.+. +.+ .+...++++.+.+... ...|++|||+|.+.. ...+.|+..|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~naLLK~L 145 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNAFLKTL 145 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHHHHHHH
Confidence 11111110 001 1234567777666432 235999999998832 3678888888
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~sgadL 478 (723)
+... ...++|.+|+.+..|-+.+++ |+ ..+.|.+++.++....++..++...+.-+ ..+..|+..+.| +.+++
T Consensus 146 Eepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~a 219 (614)
T PRK14971 146 EEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDA 219 (614)
T ss_pred hCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 8533 455677777777889999998 55 56999999999988888877765554322 246777877755 77777
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
.+.+.....++ +.. |+.+++.+.
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 77776654432 212 666555443
No 143
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.5e-11 Score=129.08 Aligned_cols=213 Identities=20% Similarity=0.319 Sum_probs=149.4
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-----eeeechhhHHHHH-
Q 004921 270 DVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-----FFSCAASEFVELF- 342 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-----~i~is~s~~~~~~- 342 (723)
.+.+.++..+.+..++.. +++ ..|.++++|||||||||.+++.+++++.-+ ++++||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 388888888777776554 332 346679999999999999999999987433 8999986543221
Q ss_pred --------------hhhhh-hHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 004921 343 --------------VGVGA-SRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (723)
Q Consensus 343 --------------~G~~~-~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~ 406 (723)
.|... .....+++... .....||++||+|.|..+.+ .++..|+...+.. ..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ce
Confidence 11111 11222232222 24567999999999976421 4777777766644 56
Q ss_pred ceEEEEeeCCCC---CCCccccCCCCc-ccccccCCCCHHHHHHHHHHHhcCC----CCCccccHHHH---HhhCCCCCH
Q 004921 407 GVIVLAATNRPD---VLDSALLRPGRF-DRQVTVDRPDVAGRVKILQVHSRGK----ALAKDVDFEKI---SRRTPGFTG 475 (723)
Q Consensus 407 ~ViVIaaTN~p~---~LD~aLlrpgRf-d~~I~v~~Pd~~~R~~Il~~~l~~~----~l~~d~dl~~L---a~~t~G~sg 475 (723)
++.+|+.+|..+ .+|+.+.+ +| ...|.|++.+.++...|++...+.. .+++++ +..+ +....| +.
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DA 231 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DA 231 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-cH
Confidence 789999999875 58888887 44 3458999999999999999877532 222221 2223 334444 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 476 ADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 476 adL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
+-...+++.|+..|.+++...++.+++..|.+.
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 777899999999999999999999999999544
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=2.6e-11 Score=131.57 Aligned_cols=215 Identities=24% Similarity=0.304 Sum_probs=136.6
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------CCcee--------
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFF-------- 331 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------~~p~i-------- 331 (723)
.|..|+|++++|..|.- .+-+|. ..+++|.|+||+|||++++++++-+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~---~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLL---NVIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHH---HhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58899999999876532 222221 2479999999999999999999865 33332
Q ss_pred -eechhh---H-------------HHHHhhhhhhHH------H------------HHHHHHHcCCCeEEEEcCccchhhh
Q 004921 332 -SCAASE---F-------------VELFVGVGASRV------R------------DLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 332 -~is~s~---~-------------~~~~~G~~~~~v------r------------~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
..+|.. + .+.-.|..+.++ . .++.+| ...+|||||++.+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH-
Confidence 111111 0 010001111111 1 112222 235999999998843
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCceEEEEeeCCCC-CCCccccCCCCcccccccCCCCH-HH
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPDV-AG 443 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~Pd~-~~ 443 (723)
.+++.|+..|+.-. ....+++|++.|..+ .+.++|+. ||..++.++.|+. ++
T Consensus 146 -------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 146 -------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 25556666664211 124578888888655 69999999 9999999999875 88
Q ss_pred HHHHHHHHhcC-------------------------------CCCCccc--cHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 444 RVKILQVHSRG-------------------------------KALAKDV--DFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 444 R~~Il~~~l~~-------------------------------~~l~~d~--dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
|.+|++..... ..+++.+ -+..++..+..-+.+.-..+++.|...|+
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 88888764321 0011100 02334444443366777788899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC
Q 004921 491 RRDLKEISKDEISDALERIIAG 512 (723)
Q Consensus 491 r~~~~~I~~edl~~Al~~~~~g 512 (723)
.+++..++.+|+..+..-++..
T Consensus 291 l~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 291 FEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988776653
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=3.4e-11 Score=112.38 Aligned_cols=120 Identities=46% Similarity=0.669 Sum_probs=82.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhhhH---HHHHHHHHHcCCCeEEEEcCccchhh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASR---VRDLFEKAKSKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~~~---vr~lF~~A~~~aP~ILfIDEiD~l~~ 375 (723)
.++++++||||||||++++.+++.. +.+++.+++.++........... ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4579999999999999999999998 89999999887665433222111 12223344456689999999998722
Q ss_pred hcCCCCCCCChHHHHHHHHHHHhhcCCC----CCCceEEEEeeCCCC--CCCccccCCCCcccccccC
Q 004921 376 QRGAGLGGGNDEREQTINQLLTEMDGFS----GNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 376 ~r~~~~~~~~~~~~~~ln~LL~~ld~~~----~~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~ 437 (723)
. ....++..+.... ...++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 99 -----------~---~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 -----------G---AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------H---HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 2223333333332 245788889988877 67778777 888777765
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=1e-10 Score=141.16 Aligned_cols=194 Identities=23% Similarity=0.286 Sum_probs=125.3
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH---
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~g-vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~--- 341 (723)
..|+|++++.+.+.+.+...+..-.+ ...|.| +||+||||+|||.+|+++|..+ +..++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 35789999988887766542211000 123565 8999999999999999999988 458899999988653
Q ss_pred ---------HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------
Q 004921 342 ---------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------- 403 (723)
Q Consensus 342 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------- 403 (723)
|+|.... ..+.+..++...+||+|||||...+ .+.+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~--------------~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP--------------DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH--------------HHHHHHHHHhhcceeecCCCcEE
Confidence 2332221 1234445566779999999987632 35666777665331
Q ss_pred CCCceEEEEeeCCCC-----------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC
Q 004921 404 GNSGVIVLAATNRPD-----------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (723)
Q Consensus 404 ~~~~ViVIaaTN~p~-----------------------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~ 454 (723)
.-.+.++|.|||... .+.|+|+. |++ +|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 013578999988521 14466666 887 8899999999999999876533
Q ss_pred C--------CCCccc---cHHHHHhhCCC--CCHHHHHHHHHHH
Q 004921 455 K--------ALAKDV---DFEKISRRTPG--FTGADLQNLMNEA 485 (723)
Q Consensus 455 ~--------~l~~d~---dl~~La~~t~G--~sgadL~~lv~~A 485 (723)
. .+.-.+ -...|+....+ +-.+.+.++++.-
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 1 111111 13445554432 3466666666554
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.24 E-value=7e-11 Score=138.93 Aligned_cols=213 Identities=24% Similarity=0.307 Sum_probs=136.9
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc--------------------
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------------------- 326 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------------------- 326 (723)
.|.+|+|++.+|..|.-. +.++. ..||||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 488999999998666322 22221 1469999999999999999999876
Q ss_pred ---------------CCceeeechhhHHHHHhhhh--hhHH--------HHHHHHHHcCCCeEEEEcCccchhhhcCCCC
Q 004921 327 ---------------GVPFFSCAASEFVELFVGVG--ASRV--------RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGL 381 (723)
Q Consensus 327 ---------------~~p~i~is~s~~~~~~~G~~--~~~v--------r~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~ 381 (723)
..||+.+.++...+..+|.- ...+ ..++..| ...|||||||+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCH------
Confidence 34666665543333333321 0000 1111111 225999999999843
Q ss_pred CCCChHHHHHHHHHHHhhcCC-----------CCCCceEEEEeeCCCC-CCCccccCCCCcccccccCCCC-HHHHHHHH
Q 004921 382 GGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRPD-VAGRVKIL 448 (723)
Q Consensus 382 ~~~~~~~~~~ln~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~Pd-~~~R~~Il 448 (723)
.+++.|+..|+.- .....+++|+++|..+ .+.++|+. ||+.+|.++.|. .+++.+++
T Consensus 141 --------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 141 --------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred --------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 3666777776522 1124588999988543 58889999 999999888774 57777777
Q ss_pred HHHhcC-------------------------------CCCCccccHHHHHhhC--CCC-CHHHHHHHHHHHHHHHHHhCC
Q 004921 449 QVHSRG-------------------------------KALAKDVDFEKISRRT--PGF-TGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 449 ~~~l~~-------------------------------~~l~~d~dl~~La~~t--~G~-sgadL~~lv~~A~~~A~r~~~ 494 (723)
+..... ..++ +..+..++..+ .|. +.+....+++-|..+|+.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 643210 0111 11122222222 134 455666788888889999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 004921 495 KEISKDEISDALERIIA 511 (723)
Q Consensus 495 ~~I~~edl~~Al~~~~~ 511 (723)
..++.+|+.+|+.-++.
T Consensus 290 ~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 290 RRVTAEDVREAAELVLP 306 (633)
T ss_pred CcCCHHHHHHHHHHHhh
Confidence 99999999999988774
No 148
>PHA02244 ATPase-like protein
Probab=99.23 E-value=2.1e-10 Score=124.23 Aligned_cols=122 Identities=28% Similarity=0.364 Sum_probs=80.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH--hh---hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF--VG---VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~--~G---~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r 377 (723)
..+||+||||||||++|+++|..++.||+.++.. .+.+ .| ....-...-|-.|. ....+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH--
Confidence 4699999999999999999999999999998842 1111 11 00000111122222 2357999999998743
Q ss_pred CCCCCCCChHHHHHHHHHHHh-----hc-CCCCCCceEEEEeeCCC-----------CCCCccccCCCCcccccccCCCC
Q 004921 378 GAGLGGGNDEREQTINQLLTE-----MD-GFSGNSGVIVLAATNRP-----------DVLDSALLRPGRFDRQVTVDRPD 440 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~-----ld-~~~~~~~ViVIaaTN~p-----------~~LD~aLlrpgRfd~~I~v~~Pd 440 (723)
.....++.++.. .+ ......++.+|+|+|.+ ..|++++++ || ..|+++.|+
T Consensus 195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~ 262 (383)
T PHA02244 195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDE 262 (383)
T ss_pred ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCc
Confidence 233344444431 11 11234578999999973 468999999 99 479999998
Q ss_pred H
Q 004921 441 V 441 (723)
Q Consensus 441 ~ 441 (723)
.
T Consensus 263 ~ 263 (383)
T PHA02244 263 K 263 (383)
T ss_pred H
Confidence 4
No 149
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=2.1e-10 Score=130.43 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=137.7
Q ss_pred ccccccccCCCccccccccchHhHHHHHHHHHHhcCc--hhhh----hh----C--------------CCCC-cceEEeC
Q 004921 255 KSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNP--DKYT----AL----G--------------AKIP-KGCLLVG 309 (723)
Q Consensus 255 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~--~~~~----~~----g--------------~~~p-~gvLL~G 309 (723)
..++|.....+..|.|+.|-+.+-..+ +.|||.| ..|. ++ | -+++ +-+||+|
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~---L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~G 333 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRM---LGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCG 333 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHH---HHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeec
Confidence 345888888889999999999886444 4444432 2222 11 0 1122 4689999
Q ss_pred CCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHH-H---cCCCeEEEEcCccchhhhcCCCCCCCC
Q 004921 310 PPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA-K---SKAPCIVFIDEIDAVGRQRGAGLGGGN 385 (723)
Q Consensus 310 PpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A-~---~~aP~ILfIDEiD~l~~~r~~~~~~~~ 385 (723)
|||-|||+||+.+|+.+|..++.+|+|+=... ..-..++..+...- - ...|..|+|||||.-.
T Consensus 334 ppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------- 400 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------- 400 (877)
T ss_pred CCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------
Confidence 99999999999999999999999999874432 11112222221111 1 1568899999998642
Q ss_pred hHHHHHHHHHHHhhc-------CCCC---------CCc---eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 004921 386 DEREQTINQLLTEMD-------GFSG---------NSG---VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (723)
Q Consensus 386 ~~~~~~ln~LL~~ld-------~~~~---------~~~---ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~ 446 (723)
...++.++..+. |-.. ..+ --||+.+|. .--|+|+.---|..+|.|.+|...-..+
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHH
Confidence 223444444433 1111 000 246777786 3346664322488899999999988888
Q ss_pred HHHHHhcCCCCCccc-cHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 004921 447 ILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 447 Il~~~l~~~~l~~d~-dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 494 (723)
-|+..+....+..+. .+..|+..+.+ ||++.+|....++.+..+
T Consensus 476 RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 476 RLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 888777665554332 24556666555 999999999888766543
No 150
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.3e-10 Score=125.24 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=125.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeee---
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSC--- 333 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~i--- 333 (723)
.+..+++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456899999999999888776653 256778999999999999999999998744 21111
Q ss_pred -chhhHHHH--------H-h-------------hhhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCCh
Q 004921 334 -AASEFVEL--------F-V-------------GVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGND 386 (723)
Q Consensus 334 -s~s~~~~~--------~-~-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~ 386 (723)
.|..+... + + .-+...+|.+-+... .....|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 11111000 0 0 001233444433322 23457999999999832
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHH
Q 004921 387 EREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKI 466 (723)
Q Consensus 387 ~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~L 466 (723)
...|.||..++.. ..+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++++.......++ +.....+
T Consensus 156 ---~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 156 ---NAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred ---HHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 3577888888853 3345666667888988899988 76 689999999999999998743222211 2224566
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q 004921 467 SRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 467 a~~t~G~sgadL~~lv~~A 485 (723)
++.+.| +++...++++..
T Consensus 227 ~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHcCC-CHHHHHHHHhcC
Confidence 666665 777766666543
No 151
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=9.9e-10 Score=110.95 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=136.3
Q ss_pred cccccccCC-CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCcee
Q 004921 256 SKFQEVPET-GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFF 331 (723)
Q Consensus 256 ~~~~~~~~~-~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i 331 (723)
..+.+++.. .+.+++|+|++.+|+.|-+-...+.. ..+.++|||+|..||||++|+||+-++. +..++
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 345555554 48999999999999988654443221 1345789999999999999999998876 67789
Q ss_pred eechhhHHHHHhhhhhhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--CCCce
Q 004921 332 SCAASEFVELFVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--GNSGV 408 (723)
Q Consensus 332 ~is~s~~~~~~~G~~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--~~~~V 408 (723)
.++-.++.. +-.+++..+.. ..-|||+|++- + ++.......|-..|||-- ...+|
T Consensus 118 EV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F------------e~gd~~yK~LKs~LeG~ve~rP~NV 175 (287)
T COG2607 118 EVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS-F------------EEGDDAYKALKSALEGGVEGRPANV 175 (287)
T ss_pred EEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC-C------------CCCchHHHHHHHHhcCCcccCCCeE
Confidence 998877654 34455555542 34699999972 1 112234455556666652 34679
Q ss_pred EEEEeeCCCCCCCcccc--------------------CCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc---ccHHH
Q 004921 409 IVLAATNRPDVLDSALL--------------------RPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD---VDFEK 465 (723)
Q Consensus 409 iVIaaTN~p~~LD~aLl--------------------rpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d---~dl~~ 465 (723)
++-+|+|+-..|+.... =+.||...+.|.+++.++-..|+..+++...++-+ .+.+.
T Consensus 176 l~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eA 255 (287)
T COG2607 176 LFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEA 255 (287)
T ss_pred EEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999998665543221 12499999999999999999999999987766432 12222
Q ss_pred --HHhhCCCCCHHHHHHHHHHH
Q 004921 466 --ISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 466 --La~~t~G~sgadL~~lv~~A 485 (723)
.|..-.|-||+-..+.++..
T Consensus 256 l~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 256 LQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHhcCCCccHhHHHHHHHH
Confidence 23333466777666666543
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.6e-10 Score=131.21 Aligned_cols=165 Identities=24% Similarity=0.368 Sum_probs=121.8
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
.-+++-|+|.++-...+ ++.|... ..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 166 ~gklDPvIGRd~EI~r~---iqIL~RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRT---IQILSRR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHH---HHHHhcc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 35788899997665444 4443322 22456899999999999999999854 56678888
Q ss_pred hhhHHH--HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEE
Q 004921 335 ASEFVE--LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLA 412 (723)
Q Consensus 335 ~s~~~~--~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIa 412 (723)
.+.++. +|.|+.+.+++.+.+......+.||||||||.+.+...... + .......+...|. +..+-+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELRCIG 304 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeEEEE
Confidence 887774 68999999999999999988899999999999976533211 1 1112222333332 55678999
Q ss_pred eeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhc
Q 004921 413 ATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 413 aTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
||+..+ .=|+||-| || ..|.+.-|+.++-..||+-.-.
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHH
Confidence 998654 36899999 99 5889999999999999985443
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.19 E-value=3.2e-10 Score=137.63 Aligned_cols=195 Identities=19% Similarity=0.310 Sum_probs=127.1
Q ss_pred cccccchHhHHHHHHHHHHhc----CchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 269 ADVAGADQAKLELQEVVDFLK----NPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~----~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
..|+|++.+.+.+.+.+...+ +|. ++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 458999999888888776532 221 233468999999999999999999976 568999999887542
Q ss_pred H-----hhhhh-----hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------
Q 004921 342 F-----VGVGA-----SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------- 403 (723)
Q Consensus 342 ~-----~G~~~-----~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-------- 403 (723)
. .|... .....+....+....+||+||||+.+.+ .+.+.|++.|+.-.
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~--------------~v~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP--------------DVFNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH--------------HHHHHHHHHHhcCceecCCCeE
Confidence 1 12110 0112333444455557999999998743 35677777664321
Q ss_pred -CCCceEEEEeeCCCCC-------------------------CCccccCCCCcccccccCCCCHHHHHHHHHHHhcC---
Q 004921 404 -GNSGVIVLAATNRPDV-------------------------LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG--- 454 (723)
Q Consensus 404 -~~~~ViVIaaTN~p~~-------------------------LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~--- 454 (723)
.-.+.+||+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+..
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~ 781 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRK 781 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHH
Confidence 1235789999997321 3356666 99999999999999999998866532
Q ss_pred ----CCCC---ccccHHHHHhhCC--CCCHHHHHHHHHHHH
Q 004921 455 ----KALA---KDVDFEKISRRTP--GFTGADLQNLMNEAA 486 (723)
Q Consensus 455 ----~~l~---~d~dl~~La~~t~--G~sgadL~~lv~~A~ 486 (723)
..+. .+.....|++... .+..+.|+++++...
T Consensus 782 ~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 782 RLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1111 1112344555433 456677777666654
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.17 E-value=4.9e-10 Score=135.74 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=110.7
Q ss_pred ccccccchHhHHHHHHHHHHhc----CchhhhhhCCCCC-cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 268 FADVAGADQAKLELQEVVDFLK----NPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~----~~~~~~~~g~~~p-~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
.+.|+|++.+.+.+.+.+...+ +|. .| ..+||+||||||||++|+++|+.+ +.+++.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~--------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN--------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC--------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 4468899999888888776532 221 23 358999999999999999999876 5689999999886
Q ss_pred HHH-----hhhh-----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC--CC---
Q 004921 340 ELF-----VGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF--SG--- 404 (723)
Q Consensus 340 ~~~-----~G~~-----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~--~~--- 404 (723)
+.. .|.. ......+....+....+||+|||++.+.+ .+.+.|+..++.- ..
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~--------------~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP--------------DVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH--------------HHHHHHHHHHhhCceecCCc
Confidence 532 2111 01111122223334348999999998732 2566666666532 11
Q ss_pred ----CCceEEEEeeCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhc
Q 004921 405 ----NSGVIVLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 405 ----~~~ViVIaaTN~p~-------------------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~ 453 (723)
-.+.++|+|||... .+.|+|+. |+|.++.|.+++.+...+|++..+.
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 12457888999731 24567777 9999999999999999998887664
No 155
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.7e-11 Score=136.79 Aligned_cols=159 Identities=24% Similarity=0.359 Sum_probs=115.9
Q ss_pred cccccchHhHHHHHHHHHH----hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhHHHH
Q 004921 269 ADVAGADQAKLELQEVVDF----LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVEL 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~----l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~~~~ 341 (723)
..|+|++++...+.+.+.. |++|. +|-..+||.||+|+|||-||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3489999998888877764 44443 2224688899999999999999999986 89999999999874
Q ss_pred ------------HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC----
Q 004921 342 ------------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN---- 405 (723)
Q Consensus 342 ------------~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~---- 405 (723)
|+|..+ -..+-+..+++..|||++|||+.-.+ .++|-||+.||.-.-.
T Consensus 564 HsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHp--------------dV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHP--------------DVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCH--------------HHHHHHHHHhcCCeeecCCC
Confidence 333322 12344455566669999999988644 4899999998754211
Q ss_pred -----CceEEEEeeCCCC----------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHh
Q 004921 406 -----SGVIVLAATNRPD----------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 406 -----~~ViVIaaTN~p~----------------------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l 452 (723)
.+.++|.|||--. ...|.|+. |+|.+|.|.+.+.+...+|+...+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 2478999998421 13345555 888888888888888888887665
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=4.1e-10 Score=123.80 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=124.5
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-------e-----
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-------F----- 331 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-------i----- 331 (723)
.+.++++|+|++.+++.|.+.+.. .++|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456899999999999888876653 25678899999999999999999999762210 0
Q ss_pred ---eechhhH--HH-----------H-Hhhh--------hhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCC
Q 004921 332 ---SCAASEF--VE-----------L-FVGV--------GASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLG 382 (723)
Q Consensus 332 ---~is~s~~--~~-----------~-~~G~--------~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~ 382 (723)
.-.|... +. . +.+. ....+|++-+.+. ...+.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 0011111 00 0 0011 1234555554443 24578999999998832
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcccc
Q 004921 383 GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD 462 (723)
Q Consensus 383 ~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~d 462 (723)
...|.||..++. ...+.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++..+.... .+..
T Consensus 156 -------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~ 220 (365)
T PRK07471 156 -------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDDP 220 (365)
T ss_pred -------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHHH
Confidence 477888888884 33456778889999999999888 65 689999999999988887654221 1112
Q ss_pred HHHHHhhCCCCCHHHHHHHHH
Q 004921 463 FEKISRRTPGFTGADLQNLMN 483 (723)
Q Consensus 463 l~~La~~t~G~sgadL~~lv~ 483 (723)
+..++..+.| ++.....+++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHhc
Confidence 2456666655 6666555543
No 157
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.14 E-value=9.5e-10 Score=123.08 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=118.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhh-HHHHHhhhh-hhHH--HHHHHHHHcC---CCeEEEEcCccch
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE-FVELFVGVG-ASRV--RDLFEKAKSK---APCIVFIDEIDAV 373 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~-~~~~~~G~~-~~~v--r~lF~~A~~~---aP~ILfIDEiD~l 373 (723)
.++||+||||||||++|++++...+. +|...++.- ......|.. .... ..-|...... ...+||+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 46999999999999999999997643 555444321 111222211 0110 1123222111 2349999999766
Q ss_pred hhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEEEeeCCCC---CCCccccCCCCcccccccCCCC-H
Q 004921 374 GRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATNRPD---VLDSALLRPGRFDRQVTVDRPD-V 441 (723)
Q Consensus 374 ~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVIaaTN~p~---~LD~aLlrpgRfd~~I~v~~Pd-~ 441 (723)
.+ .+++.||..|+.-. .-+..++++|||... ...+++.. ||-..+.+++|+ .
T Consensus 120 sp--------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 120 GP--------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred CH--------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 33 47778888773221 011134555557432 23358888 998889999997 4
Q ss_pred HHHHHHHHHHhcC--CC------CC-----------------ccc-c-HHHHHhh---C---CCCCHHHHHHHHHHHHHH
Q 004921 442 AGRVKILQVHSRG--KA------LA-----------------KDV-D-FEKISRR---T---PGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 442 ~~R~~Il~~~l~~--~~------l~-----------------~d~-d-l~~La~~---t---~G~sgadL~~lv~~A~~~ 488 (723)
++..+++...... .. +. +.+ + +..|... + ...|++-...+++-+...
T Consensus 184 ~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~ 263 (498)
T PRK13531 184 ANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS 263 (498)
T ss_pred HHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH
Confidence 5657777653211 10 10 000 0 1233321 2 237899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCC
Q 004921 489 AARRDLKEISKDEISDALERIIAGP 513 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al~~~~~g~ 513 (723)
|...++..++.+|+. .+..+++..
T Consensus 264 A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 264 AFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHCCCCCCCHHHHH-HhHHHhccC
Confidence 999999999999999 777777654
No 158
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.14 E-value=6.1e-10 Score=121.24 Aligned_cols=132 Identities=34% Similarity=0.420 Sum_probs=88.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHH------HHHHHc--CCC--eEEEEcCccc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDL------FEKAKS--KAP--CIVFIDEIDA 372 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~l------F~~A~~--~aP--~ILfIDEiD~ 372 (723)
+++||.||||||||++|+++|..++.+|+.++|.......-..+....... |..... ... +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999755432111111111110 000000 011 4999999987
Q ss_pred hhhhcCCCCCCCChHHHHHHHHHHHhhcC----------CCCCCceEEEEeeCC-----CCCCCccccCCCCcccccccC
Q 004921 373 VGRQRGAGLGGGNDEREQTINQLLTEMDG----------FSGNSGVIVLAATNR-----PDVLDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 373 l~~~r~~~~~~~~~~~~~~ln~LL~~ld~----------~~~~~~ViVIaaTN~-----p~~LD~aLlrpgRfd~~I~v~ 437 (723)
..+ .+.+.||..|+. +.-..+++||+|+|. ...|++++++ ||...+.++
T Consensus 124 a~p--------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 APP--------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred CCH--------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 633 366666666654 334467899999994 3458999999 998899999
Q ss_pred CCCHH-HHHHHHHH
Q 004921 438 RPDVA-GRVKILQV 450 (723)
Q Consensus 438 ~Pd~~-~R~~Il~~ 450 (723)
.|+.+ +...++..
T Consensus 188 yp~~~~e~~~i~~~ 201 (329)
T COG0714 188 YPDSEEEERIILAR 201 (329)
T ss_pred CCCchHHHHHHHHh
Confidence 99544 44444443
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=9e-10 Score=133.36 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=113.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCc-ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH---
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~-gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~--- 341 (723)
+.|+|++++.+.+.+.+...+..-. ....|. .+||+||+|||||.+|+++|+.+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4588999999888877764221000 012243 47999999999999999999987 468999998887532
Q ss_pred --Hhhhh-----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CC
Q 004921 342 --FVGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GN 405 (723)
Q Consensus 342 --~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~ 405 (723)
+.|.. ......+.+..+....+||+|||+|.+.+ .+.+.|++.|+.-. .-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~--------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP--------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH--------------HHHHHHHHHhccCceecCCCcEEec
Confidence 22211 11123345555555558999999998743 36777777776421 12
Q ss_pred CceEEEEeeCCCCC-------------------------------------CCccccCCCCcccccccCCCCHHHHHHHH
Q 004921 406 SGVIVLAATNRPDV-------------------------------------LDSALLRPGRFDRQVTVDRPDVAGRVKIL 448 (723)
Q Consensus 406 ~~ViVIaaTN~p~~-------------------------------------LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il 448 (723)
.+.++|.|||.... +.|.|+. |+|.+|.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 45789999885321 2245566 99999999999999999999
Q ss_pred HHHhc
Q 004921 449 QVHSR 453 (723)
Q Consensus 449 ~~~l~ 453 (723)
+..+.
T Consensus 729 ~~~l~ 733 (821)
T CHL00095 729 EIMLK 733 (821)
T ss_pred HHHHH
Confidence 87764
No 160
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=1.3e-09 Score=114.63 Aligned_cols=189 Identities=16% Similarity=0.244 Sum_probs=116.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCC-cee--e-----echhhHHHHH---hhhh---h------hHHHHHH-HHHHcCCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGV-PFF--S-----CAASEFVELF---VGVG---A------SRVRDLF-EKAKSKAP 362 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~-p~i--~-----is~s~~~~~~---~G~~---~------~~vr~lF-~~A~~~aP 362 (723)
-++|+||+|+|||++++.+++++.. .+. . .+..++.... .|.. . ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 221 1 1112222111 1211 0 1122222 22335667
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC---CCC----ccccCCCCcccccc
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD---VLD----SALLRPGRFDRQVT 435 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~---~LD----~aLlrpgRfd~~I~ 435 (723)
.+|+|||+|.+.. .....+..|..... .....+.|+.+ ..++ .+. ..+.+ |+...+.
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998732 11222322222211 11222222222 3332 121 12444 7777889
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC-----CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 436 VDRPDVAGRVKILQVHSRGKAL-----AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 436 v~~Pd~~~R~~Il~~~l~~~~l-----~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
+++.+.++..+++...++.... -.+..+..|.+.+.| .++.|..+++.+...|..++.+.|+.+++.+++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRG-IPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999887754321 123356778888888 467799999999999999999999999999998764
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.12 E-value=2.7e-10 Score=130.57 Aligned_cols=208 Identities=21% Similarity=0.304 Sum_probs=130.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh-----------cCCceeeec
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE-----------AGVPFFSCA 334 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e-----------~~~p~i~is 334 (723)
.+|++++|.....+.+.+.+..+.. .+..|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4799999999988888777665332 2357999999999999999999876 467999999
Q ss_pred hhhHHHH-----Hhhhhh--------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 335 ASEFVEL-----FVGVGA--------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 335 ~s~~~~~-----~~G~~~--------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
|+.+.+. ..|... ..-..+|+.|.. ..||||||+.+... .+..|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~--------------~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLP--------------LQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHH--------------HHHHHHhhhhc
Confidence 9865432 122110 011235555543 49999999998432 44455555432
Q ss_pred C-----CC----CCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhcC----C--
Q 004921 402 F-----SG----NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG----K-- 455 (723)
Q Consensus 402 ~-----~~----~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~~----Il~~~l~~----~-- 455 (723)
- .. ..++-+|++||..- . .+...|+|.. .+.+..|...+|.+ +++.+++. .
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 1 11 12467899988742 1 2223344432 46677788887754 33444432 1
Q ss_pred CCCcccc------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 456 ALAKDVD------FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 456 ~l~~d~d------l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
.+.++.- +..|....+-.+.++|++++++++..........++.+++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 2222210 14566666777999999999999876433223456766654
No 162
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.12 E-value=6.3e-10 Score=126.77 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=130.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------------------
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------------------- 326 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~------------------- 326 (723)
..|+||.|++.+++.+.-.+ .....++|.||||||||++++.+++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999999876654322 122469999999999999999998632
Q ss_pred ---------CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHH
Q 004921 327 ---------GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (723)
Q Consensus 327 ---------~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~ 397 (723)
..||...+++.......|.+...-...+..|. ..+|||||++.+.+ .++..|++
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~--------------~~~~~L~~ 317 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR--------------SVLDALRE 317 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH--------------HHHHHHHH
Confidence 13444433332222223322111122344443 35999999998743 24555555
Q ss_pred hhcCCC-----------CCCceEEEEeeCCC------C-----------------CCCccccCCCCcccccccCCCCHHH
Q 004921 398 EMDGFS-----------GNSGVIVLAATNRP------D-----------------VLDSALLRPGRFDRQVTVDRPDVAG 443 (723)
Q Consensus 398 ~ld~~~-----------~~~~ViVIaaTN~p------~-----------------~LD~aLlrpgRfd~~I~v~~Pd~~~ 443 (723)
.|+... -..++.+|+++|.- + .|...|++ |||.++.++.++..+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 554321 12468899999852 1 47778888 999999998765432
Q ss_pred -------------HHHHHHH------HhcCC---CCCcccc-----------------HHHHHhhCCCCCHHHHHHHHHH
Q 004921 444 -------------RVKILQV------HSRGK---ALAKDVD-----------------FEKISRRTPGFTGADLQNLMNE 484 (723)
Q Consensus 444 -------------R~~Il~~------~l~~~---~l~~d~d-----------------l~~La~~t~G~sgadL~~lv~~ 484 (723)
|..+.+. .+++. .+...+. +..... ..++|.+....+++-
T Consensus 396 l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrv 474 (499)
T TIGR00368 396 LLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKV 474 (499)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHH
Confidence 2223221 11121 1111111 112222 235899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Q 004921 485 AAILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 485 A~~~A~r~~~~~I~~edl~~Al~ 507 (723)
|..+|..++.+.|+.+|+.+|+.
T Consensus 475 ArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 475 ARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999999974
No 163
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.2e-09 Score=118.11 Aligned_cols=180 Identities=16% Similarity=0.272 Sum_probs=118.6
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH--Hhh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVG 344 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~--~~G 344 (723)
+|+||+|++.+++.|.+.+.. .+.|+.+||+||+|+|||++|+++|+.+-+....-+..++... +.|
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 699999999999888776532 2567789999999999999999999976321110001111000 011
Q ss_pred --hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 345 --VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 345 --~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
-+...+|++.+.+.. ....|++||++|.+. ....|.||..++. ...++++|.+|+.++
T Consensus 71 ~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 123356666654432 234699999999883 2367889999984 445567776778889
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHH
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQN 480 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~ 480 (723)
.+.+.+++ |+ ..++|++|+.++....+.....+ + .+.....++..+.| ++..+..
T Consensus 135 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g-~~~~a~~ 189 (313)
T PRK05564 135 QILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG-IPGKVEK 189 (313)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC-CHHHHHH
Confidence 99999999 55 58999999999888777655432 2 12234456665554 4443433
No 164
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.09 E-value=2.1e-09 Score=125.65 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=66.6
Q ss_pred ceEEEEeeCCC--CCCCccccCCCCcc---cccccC--CC-CHHHHHHHHHHHh---cCCCCCcccc---HHHHH----h
Q 004921 407 GVIVLAATNRP--DVLDSALLRPGRFD---RQVTVD--RP-DVAGRVKILQVHS---RGKALAKDVD---FEKIS----R 468 (723)
Q Consensus 407 ~ViVIaaTN~p--~~LD~aLlrpgRfd---~~I~v~--~P-d~~~R~~Il~~~l---~~~~l~~d~d---l~~La----~ 468 (723)
++.+|+++|.. ..+|+.|++ ||+ ..+.++ .| +.+.|.++.+... +.....+.++ +..+. +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999975 469999999 998 555553 24 4555655554332 2221112222 22332 1
Q ss_pred hC-----CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 469 RT-----PGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 469 ~t-----~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
.. ...+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 1246799999999998888778888999999999987543
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=9.5e-10 Score=109.90 Aligned_cols=149 Identities=18% Similarity=0.235 Sum_probs=98.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------e-eeechhhHHHH---------Hh--hhhhhHHHHHHHHHHc-
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------F-FSCAASEFVEL---------FV--GVGASRVRDLFEKAKS- 359 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~-i~is~s~~~~~---------~~--G~~~~~vr~lF~~A~~- 359 (723)
+.|..+||+||+|+|||++|+.+++.+... . ...+|..+... .. ..+...++++.+.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 567889999999999999999999986432 1 00011110000 00 0123456666666654
Q ss_pred ---CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccccc
Q 004921 360 ---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 360 ---~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v 436 (723)
....||+|||+|.+.. ...+.||..|+... ...++|.+|+.+..+.+++++ |+ ..+.+
T Consensus 92 ~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred cccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 3356999999999843 25677888887633 345666667778899999998 55 48999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCC
Q 004921 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG 472 (723)
Q Consensus 437 ~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G 472 (723)
++|+.++..++++.+ .++ +..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999998888775 232 2235556666554
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=5.1e-10 Score=103.25 Aligned_cols=126 Identities=31% Similarity=0.423 Sum_probs=82.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCc---eeeechhhHHHH--------------HhhhhhhHHHHHHHHHHcCCCeE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEFVEL--------------FVGVGASRVRDLFEKAKSKAPCI 364 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p---~i~is~s~~~~~--------------~~G~~~~~vr~lF~~A~~~aP~I 364 (723)
+..++|+||||||||++++.+|..+..+ +++++++..... .........+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999998775 888887654321 11234556778888898887899
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHH--HHhhcCCCCCCceEEEEeeCC-CCCCCccccCCCCcccccccCCC
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQL--LTEMDGFSGNSGVIVLAATNR-PDVLDSALLRPGRFDRQVTVDRP 439 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L--L~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlrpgRfd~~I~v~~P 439 (723)
|+|||++.+...... ...... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE----------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH----------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998643211 011000 000111122445688888886 3334444444 88888877654
No 167
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-10 Score=119.64 Aligned_cols=136 Identities=29% Similarity=0.406 Sum_probs=90.8
Q ss_pred cccc-cccchHhHHHHHHHHHH-hcCchhh-hhhCCCCC-cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-H
Q 004921 267 TFAD-VAGADQAKLELQEVVDF-LKNPDKY-TALGAKIP-KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-L 341 (723)
Q Consensus 267 ~f~d-v~G~~~~k~~L~eiv~~-l~~~~~~-~~~g~~~p-~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~ 341 (723)
-+++ |+|++.+|+.|.-.|.- .+.-... .+-...+. .++||.||.|||||+||+.+|+.+++||-..++..+.+ .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4555 78999999877644431 1110000 11113333 37999999999999999999999999999999998876 4
Q ss_pred HhhhhhhH-HHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC
Q 004921 342 FVGVGASR-VRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (723)
Q Consensus 342 ~~G~~~~~-vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~ 402 (723)
|+|+...+ +-.++..|. +....||+|||||.+.++.....-.-+-..+.+...||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88876444 344444332 12246999999999987654332222223456888899988875
No 168
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.08 E-value=4.6e-09 Score=108.49 Aligned_cols=100 Identities=22% Similarity=0.281 Sum_probs=72.1
Q ss_pred eEEEEeeCC-------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHhhCCCC
Q 004921 408 VIVLAATNR-------------PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAK-DVDFEKISRRTPGF 473 (723)
Q Consensus 408 ViVIaaTN~-------------p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d~dl~~La~~t~G~ 473 (723)
-+||.+||+ |.-+++.|+. |+ .+|..-+.+.++.++|++...+-..+.- +..+..++.....-
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t 402 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST 402 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch
Confidence 367788886 3446677776 55 4566667888899999998876655532 22356666665556
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 474 TGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 474 sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
|-+...+++.-|.+.|...+++.|..+|++++-+-.+
T Consensus 403 sLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 403 SLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred hHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 7777778888888888888999999999998865443
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.08 E-value=1.5e-09 Score=124.85 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=129.4
Q ss_pred ccccchHhHHHHHHHHHHhcCchhh--hhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-eeee---chhhHHHHHh
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKY--TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-FFSC---AASEFVELFV 343 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~--~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-~i~i---s~s~~~~~~~ 343 (723)
+|.|++.+|..+.-. .+...... .....+-..++||+|+||||||++|+++++..... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~--l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLL--LFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHH--HhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 578899887665322 22211111 11122233479999999999999999999976433 3221 2211211000
Q ss_pred h---hhhhHHH-HHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCce
Q 004921 344 G---VGASRVR-DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGV 408 (723)
Q Consensus 344 G---~~~~~vr-~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~V 408 (723)
. .+...++ ..+..| ...+++|||+|.+.. .....|++.|+.-. -+..+
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 0 0000000 011112 235999999999843 24445555554321 12457
Q ss_pred EEEEeeCCCC-------------CCCccccCCCCccccccc-CCCCHHHHHHHHHHHhcCCC-------------C----
Q 004921 409 IVLAATNRPD-------------VLDSALLRPGRFDRQVTV-DRPDVAGRVKILQVHSRGKA-------------L---- 457 (723)
Q Consensus 409 iVIaaTN~p~-------------~LD~aLlrpgRfd~~I~v-~~Pd~~~R~~Il~~~l~~~~-------------l---- 457 (723)
.||+|+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... +
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEF 422 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHH
Confidence 8999999752 58999999 99986554 67899888888876432100 0
Q ss_pred ------------Ccccc---HHHHH------hh---------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004921 458 ------------AKDVD---FEKIS------RR---------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 458 ------------~~d~d---l~~La------~~---------t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~ 507 (723)
.+.+. ...+. +. ..+.|++.+..+++-|...|..+.+..++.+|+.+|+.
T Consensus 423 l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 423 LRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 00010 01110 11 23568899999999999999999999999999999976
Q ss_pred HH
Q 004921 508 RI 509 (723)
Q Consensus 508 ~~ 509 (723)
-+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 54
No 170
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.07 E-value=6.6e-09 Score=109.76 Aligned_cols=217 Identities=19% Similarity=0.262 Sum_probs=134.5
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechh----
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAAS---- 336 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s---- 336 (723)
--+|+..+++.|..+-+.+..|.. .-+.++||+|++|.|||++++.+.+.. .+|++++.+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 458899999999988888888764 224579999999999999999998743 3577777652
Q ss_pred --hHHHHH---hhh-------hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 004921 337 --EFVELF---VGV-------GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG 404 (723)
Q Consensus 337 --~~~~~~---~G~-------~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~ 404 (723)
.|.... .|. ....-..+....+...+.+|+|||++.+..- .......++|.|-..-+ .-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~N--eL 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGN--EL 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhh--cc
Confidence 222111 110 1112223344455667789999999998542 12223334443333222 11
Q ss_pred CCceEEEEeeCCCC--CCCccccCCCCcccccccCCC-CHHHHHHHHHHHhcCCCCCc--ccc---H-HHHHhhCCCCCH
Q 004921 405 NSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRP-DVAGRVKILQVHSRGKALAK--DVD---F-EKISRRTPGFTG 475 (723)
Q Consensus 405 ~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~~P-d~~~R~~Il~~~l~~~~l~~--d~d---l-~~La~~t~G~sg 475 (723)
.-.++.+++-.-.. .-|+.+-+ ||+ .+.+|.- .-++-..++..+-+..++.. +.. + ..|-..+.| +.
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~i 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LI 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-ch
Confidence 22345555433222 35677777 885 4444432 23345556665554444422 222 2 445566666 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 476 ADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 476 adL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+++.++++.|+..|++.+.+.|+.+.++..
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 799999999999999999999998887764
No 171
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.07 E-value=7e-10 Score=127.25 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=128.1
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechhhHHHH-
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFVEL- 341 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s~~~~~- 341 (723)
.+|++++|.....+.+.+.+..+.. .+..|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 6799999999988888777655332 2357999999999999999999865 4679999999765432
Q ss_pred ----Hhhhhh--------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----CC
Q 004921 342 ----FVGVGA--------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SG 404 (723)
Q Consensus 342 ----~~G~~~--------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~~ 404 (723)
..|... ..-..+|+.|.. ..||||||+.+... .+..|+..++.- ..
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCC
Confidence 122110 012234555543 48999999998432 344455544321 11
Q ss_pred ----CCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhcCC------CCCccccH
Q 004921 405 ----NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRGK------ALAKDVDF 463 (723)
Q Consensus 405 ----~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~~----Il~~~l~~~------~l~~d~dl 463 (723)
..++-+|++||..-. .+...|+|.. .+.+..|+..+|.+ +++.+++.. .+.++ .+
T Consensus 342 ~~~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~ 417 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AA 417 (526)
T ss_pred CceeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HH
Confidence 123578888887421 1122233322 45667788877754 333443321 22211 12
Q ss_pred HH-------HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 464 EK-------ISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 464 ~~-------La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
.. |....+-.+.++|++++++++..+.......|+.+++..
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 33 667777779999999999987664322234677777543
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=2.7e-09 Score=124.20 Aligned_cols=259 Identities=12% Similarity=0.139 Sum_probs=142.0
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee-ech
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-CAA 335 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~-is~ 335 (723)
..|.....+.+++||+|+++..++|+.++..... +....+.++|+||||||||++++.+|++++..++. .+.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4566667789999999999888877776654221 11223459999999999999999999998866544 111
Q ss_pred hh---HH----------HHH--hhhhhhHHHHHHHHHHc----------CCCeEEEEcCccchhhhcCCCCCCCChHHHH
Q 004921 336 SE---FV----------ELF--VGVGASRVRDLFEKAKS----------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ 390 (723)
Q Consensus 336 s~---~~----------~~~--~G~~~~~vr~lF~~A~~----------~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~ 390 (723)
.. .. ..+ .......++.++..+.. ....|||||||+.+... ...
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~ 213 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTR 213 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHH
Confidence 10 00 000 01122334455555541 24579999999987532 112
Q ss_pred HHHHHHH-hhcCCCCCCceEEEEeeC-CCC--------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC
Q 004921 391 TINQLLT-EMDGFSGNSGVIVLAATN-RPD--------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG 454 (723)
Q Consensus 391 ~ln~LL~-~ld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~ 454 (723)
.+..+|. ... ....+.+|++++ .+. .|.+++++..|. .+|.|.+.+.....+.|+..++.
T Consensus 214 ~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 214 ALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred HHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 3444444 221 122333333333 221 133677753344 47899999999977777766643
Q ss_pred CC--C------CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCCCccc--
Q 004921 455 KA--L------AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR-------DLKEISKDEISDALERIIAGPEKKN-- 517 (723)
Q Consensus 455 ~~--l------~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~-------~~~~I~~edl~~Al~~~~~g~~~~~-- 517 (723)
.. . ..+..+..|+....| |++.+++.....+.+. +...++..++..+..+...-.....
T Consensus 290 E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~ 365 (637)
T TIGR00602 290 EAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQE 365 (637)
T ss_pred hhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHH
Confidence 21 1 112245666665555 8887777665543322 2223444444444322210000000
Q ss_pred -ccccccchhHHHHHHHHHHHHhhh
Q 004921 518 -AVVSDEKKKLVAYHEAGHALVGAL 541 (723)
Q Consensus 518 -~~~~~~~~~~~A~hEaGhalv~~~ 541 (723)
..+...+..+..+|-.|..+-...
T Consensus 366 l~~~~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 366 IQALGGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred HHhhccccchhHHHHHhChhhcccc
Confidence 012233445677888877765443
No 173
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.07 E-value=1.8e-10 Score=115.65 Aligned_cols=119 Identities=27% Similarity=0.403 Sum_probs=67.8
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc--------------------
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------------------- 326 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------------------- 326 (723)
.|+||+|++.+|..|.-...- ..++||+||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 489999999999888654432 2579999999999999999998733
Q ss_pred --------CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 327 --------GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 327 --------~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
..||....-+--....+|.+....-..+..|. ..|||+||+-.+ ...+++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 11333222221112222222111111222232 359999999665 34588888887
Q ss_pred hcCCCC-----------CCceEEEEeeCC
Q 004921 399 MDGFSG-----------NSGVIVLAATNR 416 (723)
Q Consensus 399 ld~~~~-----------~~~ViVIaaTN~ 416 (723)
|+.-.- ..++++|+|.|.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHCCeEEEEECCceEEEecccEEEEEecc
Confidence 764211 235789999984
No 174
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=5.6e-10 Score=124.50 Aligned_cols=212 Identities=28% Similarity=0.385 Sum_probs=135.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~ 340 (723)
...+|+||+|......++.+.+... ...+..|||.|.+||||.++|++|-+.. +.||+.+||..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3468999999998877666655543 2445689999999999999999997755 77999999975433
Q ss_pred H-----Hhhh------hhhH--HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC-----C
Q 004921 341 L-----FVGV------GASR--VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-----F 402 (723)
Q Consensus 341 ~-----~~G~------~~~~--vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~-----~ 402 (723)
. ..|. ++.+ -..+|+.|... -||+|||..+.. ..+..||..++. +
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl--------------~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL--------------PLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH--------------HHHHHHHHHHhhceEEec
Confidence 2 1221 1111 33456665544 899999988732 244555554432 2
Q ss_pred CC----CCceEEEEeeCCCCCCCccccCCCCcc-------cccccCCCCHHHHHHHH----HHHhc----CC----C-CC
Q 004921 403 SG----NSGVIVLAATNRPDVLDSALLRPGRFD-------RQVTVDRPDVAGRVKIL----QVHSR----GK----A-LA 458 (723)
Q Consensus 403 ~~----~~~ViVIaaTN~p~~LD~aLlrpgRfd-------~~I~v~~Pd~~~R~~Il----~~~l~----~~----~-l~ 458 (723)
.+ .-.|-||+|||+. +-.+ ...|+|- .++.+..|...+|.+=+ .+++. +. . +.
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~-i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKM-IAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHH-HhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 22 2258999999983 1112 2224442 26677788888885422 22222 11 1 22
Q ss_pred ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 004921 459 KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS-DALER 508 (723)
Q Consensus 459 ~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~-~Al~~ 508 (723)
+ ..+..|.+.-|-.+.++|+|++.++.... .....|+.+|+. ..+..
T Consensus 450 ~-~a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~~ 497 (560)
T COG3829 450 P-DALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFALEE 497 (560)
T ss_pred H-HHHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhhcc
Confidence 2 23567777777779999999999997643 333458888877 55443
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.8e-09 Score=115.13 Aligned_cols=183 Identities=16% Similarity=0.233 Sum_probs=124.2
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce----------eeechh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF----------FSCAAS 336 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~----------i~is~s 336 (723)
.|++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999998887754 24577899999999999999999998752211 001111
Q ss_pred hHH---------H-----H---Hhh--------hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChH
Q 004921 337 EFV---------E-----L---FVG--------VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDE 387 (723)
Q Consensus 337 ~~~---------~-----~---~~G--------~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~ 387 (723)
++. + . ..| -....+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 111 0 0 000 012345666555543 334799999999883
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHH
Q 004921 388 REQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIS 467 (723)
Q Consensus 388 ~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La 467 (723)
....|.||..|+... +.++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 236788999998644 33567777889999999999 65 67999999999998888865432111 22246777
Q ss_pred hhCCCCCHHHHHHHHH
Q 004921 468 RRTPGFTGADLQNLMN 483 (723)
Q Consensus 468 ~~t~G~sgadL~~lv~ 483 (723)
....| +++...++++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77766 7776666554
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=3.7e-09 Score=113.96 Aligned_cols=146 Identities=23% Similarity=0.309 Sum_probs=98.7
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC----------------------
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---------------------- 327 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---------------------- 327 (723)
+++|.+++...+...+.... +.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 56777777666655443211 4456799999999999999999999886
Q ss_pred --CceeeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 328 --VPFFSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 328 --~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
-.++.++.++-... ......++++-+.... ...-|++|||+|.+.. ...|.++..++.
T Consensus 72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEe 135 (325)
T COG0470 72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE 135 (325)
T ss_pred CCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc
Confidence 35556665543221 0123345554444332 2347999999999943 477888888884
Q ss_pred CCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 004921 402 FSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (723)
Q Consensus 402 ~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~ 446 (723)
......+|.+||.++.+-+.+++ |+ ..+.|++|+...+..
T Consensus 136 --p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 --PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred --CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHH
Confidence 44556888888999999999998 54 467777755544433
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.03 E-value=1.8e-09 Score=108.39 Aligned_cols=208 Identities=19% Similarity=0.265 Sum_probs=127.4
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-C----Cceeee
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-G----VPFFSC 333 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-~----~p~i~i 333 (723)
|..++.+..+.||+|.++..+.|.-+...-..| +++|.||||||||+-+.++|+++ | --++.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 556677889999999999988877665432222 48999999999999999999987 3 234566
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHcCCC----eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceE
Q 004921 334 AASEFVELFVGVGASRVRDLFEKAKSKAP----CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (723)
Q Consensus 334 s~s~~~~~~~G~~~~~vr~lF~~A~~~aP----~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~Vi 409 (723)
++|+-.+ ...-..++ +.|.+-+-.-| .||++||.|++.. .....|-..|+-++... -
T Consensus 85 NASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~--------------gAQQAlRRtMEiyS~tt--R 145 (333)
T KOG0991|consen 85 NASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTA--------------GAQQALRRTMEIYSNTT--R 145 (333)
T ss_pred cCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhh--------------HHHHHHHHHHHHHcccc--h
Confidence 6654221 11111222 34666554332 5999999999842 13334445555444443 4
Q ss_pred EEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 410 VIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
+..++|..+.|=+.+.+ |+ -.+.+...+..+...-+....+...+. .+.-++.+.-...| |.++.+|.. .
T Consensus 146 FalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL--Q 216 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL--Q 216 (333)
T ss_pred hhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH--H
Confidence 66778888887777776 44 234455555544443333333333332 23346666666666 777777764 3
Q ss_pred HHHhCCCCCCHHHHHHHH
Q 004921 489 AARRDLKEISKDEISDAL 506 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al 506 (723)
+...+...++.+.+...+
T Consensus 217 st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHhccccccchhhhhhcc
Confidence 445566667776655443
No 178
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.02 E-value=2e-09 Score=115.77 Aligned_cols=66 Identities=39% Similarity=0.601 Sum_probs=52.3
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHH
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFV 339 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~ 339 (723)
..+.++|+.++++..--+++..+..+. ..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 456899999999999989988776432 357999999999999999999999996 899999998774
No 179
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.01 E-value=1.8e-09 Score=125.10 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=127.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
..+|++++|.....+++.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 46899999999988877776665432 23569999999999999999998864 679999999766432
Q ss_pred Hh-----hhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----C
Q 004921 342 FV-----GVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----G 404 (723)
Q Consensus 342 ~~-----G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~ 404 (723)
.. |... ......|..+ ...+|||||||.+... .+..|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC
Confidence 11 1100 0001123333 2469999999998432 4445555554211 1
Q ss_pred ----CCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHH----HHHHHHhcC--------CCCCccc
Q 004921 405 ----NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRV----KILQVHSRG--------KALAKDV 461 (723)
Q Consensus 405 ----~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~----~Il~~~l~~--------~~l~~d~ 461 (723)
..++.+|++|+..- .. +...|+|.. .+.+..|...+|. .|++.++.. ..++ +.
T Consensus 325 ~~~~~~~~riI~~s~~~l--~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s-~~ 400 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDL--EE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT-PS 400 (534)
T ss_pred CceEeecEEEEEeCCCCH--HH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC-HH
Confidence 12478888887631 11 122333422 3455566665553 344444421 1122 22
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 462 DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 462 dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
.+..|....+..+.++|+++++.|+..+ ....|+.+|+..
T Consensus 401 a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 401 AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 3577778877779999999999987543 345788888653
No 180
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.00 E-value=1.9e-09 Score=120.34 Aligned_cols=205 Identities=23% Similarity=0.342 Sum_probs=133.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL- 341 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~- 341 (723)
..+.+++|...+.+++.+.+..+... ...|||+|++||||.++|++|.... +.||+.+||..+-+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 46889999999999999988876543 3469999999999999999997755 569999999754322
Q ss_pred ----Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc-----CCCC-
Q 004921 342 ----FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD-----GFSG- 404 (723)
Q Consensus 342 ----~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld-----~~~~- 404 (723)
..|... .+-...|+.|... .||||||..+.. .++..||..++ ...+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl--------------~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPL--------------ELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCH--------------HHHHHHHHHHHcCeeEecCCC
Confidence 223111 1122356666554 999999988743 24555555543 2222
Q ss_pred ---CCceEEEEeeCCCCCCCccccCCCCcc-------cccccCCCCHHHHHH----HHHHHhc----CCCC-C---cccc
Q 004921 405 ---NSGVIVLAATNRPDVLDSALLRPGRFD-------RQVTVDRPDVAGRVK----ILQVHSR----GKAL-A---KDVD 462 (723)
Q Consensus 405 ---~~~ViVIaaTN~p~~LD~aLlrpgRfd-------~~I~v~~Pd~~~R~~----Il~~~l~----~~~l-~---~d~d 462 (723)
+-+|-||++||+. |.. ....|+|- .++.+..|...+|.+ +++++++ .... . ....
T Consensus 271 ~~i~vdvRiIaaT~~d--L~~-~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRD--LEE-EVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcC--HHH-HHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 2258899999983 221 12224442 377888899988865 3333332 1111 1 2223
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 463 FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 463 l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
+..|....|-.+.++|+|++.+++..+ ....|+.+++.
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 566666667668899999999887654 34456665544
No 181
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.00 E-value=4.8e-09 Score=122.31 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=124.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHHHHHhhhhhhHHHHHHHHHH---------cCCCeEEEEcCcc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVGASRVRDLFEKAK---------SKAPCIVFIDEID 371 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~---------~~aP~ILfIDEiD 371 (723)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. .+...+.... .....+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999764 4788887533333333321 1111010000 1122599999999
Q ss_pred chhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCceEEEEeeCCCC---CCCccccCCCCcccccccC
Q 004921 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPD---VLDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 372 ~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~ViVIaaTN~p~---~LD~aLlrpgRfd~~I~v~ 437 (723)
.+.+ .+++.|+..|+.-. ....+.||+++|..+ .+.++|+. ||+.++.+.
T Consensus 95 rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 9843 36667777665321 123578899999765 68899999 999887776
Q ss_pred -CCCHHHHHHHHHHHhcC-------------------------CCCCccccHHHHHhhC--CCCC-HHHHHHHHHHHHHH
Q 004921 438 -RPDVAGRVKILQVHSRG-------------------------KALAKDVDFEKISRRT--PGFT-GADLQNLMNEAAIL 488 (723)
Q Consensus 438 -~Pd~~~R~~Il~~~l~~-------------------------~~l~~d~dl~~La~~t--~G~s-gadL~~lv~~A~~~ 488 (723)
.|+.++|.+|++.+... ..++++ .+..++... .|.+ .+.-..+++-|...
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 46778888888765421 111111 122222221 2333 45556778888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc
Q 004921 489 AARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
|+.+++..++.+|+..++.-++.
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999987764
No 182
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.00 E-value=2.8e-09 Score=115.94 Aligned_cols=188 Identities=22% Similarity=0.254 Sum_probs=113.7
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH-----
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF----- 342 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~----- 342 (723)
++|.....+.+.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 3566666656555554432 224579999999999999999997654 5799999997553221
Q ss_pred hhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCC
Q 004921 343 VGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNS 406 (723)
Q Consensus 343 ~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~ 406 (723)
.|... .....+|+.|. ..+|||||||.+.. . .+..|+..++.-. ...
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~-----------~---~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASL-----------L---VQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCH-----------H---HHHHHHHHHHcCcEEecCCCceecc
Confidence 12110 01122344443 45999999999843 2 4444555443211 124
Q ss_pred ceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHHHH----HHHHHhc------CC----CCCccccHHH
Q 004921 407 GVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSR------GK----ALAKDVDFEK 465 (723)
Q Consensus 407 ~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l~------~~----~l~~d~dl~~ 465 (723)
++.+|++||..- .+.+.|.. ||. .+.+..|...+|.+ +++.++. +. .+ .+..+..
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~l-s~~a~~~ 209 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGF-TPQAREQ 209 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHH
Confidence 578899988631 23444544 442 35566677777644 3333332 11 12 2223577
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 466 ISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 466 La~~t~G~sgadL~~lv~~A~~~A 489 (723)
|....+..+.++|++++++++..+
T Consensus 210 L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 210 LLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhC
Confidence 778887779999999999887553
No 183
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=3.3e-09 Score=117.02 Aligned_cols=198 Identities=23% Similarity=0.299 Sum_probs=127.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
...+.+|+|...+..++.+.++..... +..|||.|.+||||..+||+|-... +.||+.+||+.+-+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 568899999999988888888765433 3479999999999999999997755 679999999866543
Q ss_pred Hhh-hhhhHHHHHHHHHHcC--------CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh-----hcCCCCCC-
Q 004921 342 FVG-VGASRVRDLFEKAKSK--------APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE-----MDGFSGNS- 406 (723)
Q Consensus 342 ~~G-~~~~~vr~lF~~A~~~--------aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~-----ld~~~~~~- 406 (723)
... +--...+..|.-|... ...-||+|||..+.. . .+..||.. ++.+.++.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-----------~---lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-----------A---LQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-----------H---HHHHHHHHHhhcceeecCCCce
Confidence 211 1111223333333321 124899999988732 2 33444443 33333322
Q ss_pred ---ceEEEEeeCCCCCCCccccCCCCcc-------cccccCCCCHHHHHH----HHHHHhc----CCCCC----ccccHH
Q 004921 407 ---GVIVLAATNRPDVLDSALLRPGRFD-------RQVTVDRPDVAGRVK----ILQVHSR----GKALA----KDVDFE 464 (723)
Q Consensus 407 ---~ViVIaaTN~p~~LD~aLlrpgRfd-------~~I~v~~Pd~~~R~~----Il~~~l~----~~~l~----~d~dl~ 464 (723)
.|-||+|||+ +|..+.. .|+|- .++.+..|...+|.+ +.+++++ ..... ....++
T Consensus 355 ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 4899999998 3333332 34543 266777788888743 2222222 11210 112356
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHH
Q 004921 465 KISRRTPGFTGADLQNLMNEAAILA 489 (723)
Q Consensus 465 ~La~~t~G~sgadL~~lv~~A~~~A 489 (723)
.|.+..+-.+.++|+|++++|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 7777777779999999999999887
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.99 E-value=3.4e-09 Score=117.75 Aligned_cols=141 Identities=26% Similarity=0.406 Sum_probs=87.6
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeeec----hh
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSCA----AS 336 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~is----~s 336 (723)
++++.+.+...+.+ +..+.. .++++|+||||||||++|+.+|..++. ..+.++ ..
T Consensus 174 l~d~~i~e~~le~l---~~~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETI---LKRLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHH---HHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 66777766554443 443332 357999999999999999999987742 122232 23
Q ss_pred hHHHHHh--hhhhh----HHHHHHHHHHc--CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc--------
Q 004921 337 EFVELFV--GVGAS----RVRDLFEKAKS--KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD-------- 400 (723)
Q Consensus 337 ~~~~~~~--G~~~~----~vr~lF~~A~~--~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld-------- 400 (723)
++++.+. +.+.. .+.++...|+. ..|++||||||+.....+ +...++..|+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 4443221 11111 23445566654 357999999998764322 2222222222
Q ss_pred ------------CCCCCCceEEEEeeCCCC----CCCccccCCCCcccccccCC
Q 004921 401 ------------GFSGNSGVIVLAATNRPD----VLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 401 ------------~~~~~~~ViVIaaTN~p~----~LD~aLlrpgRfd~~I~v~~ 438 (723)
.+....++.+|||.|..+ .+|.||+| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 244456899999999988 69999999 994 455543
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=1.3e-10 Score=110.14 Aligned_cols=113 Identities=33% Similarity=0.395 Sum_probs=68.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH--HHhhhhhh------HHHHHHHHHHcCCCeEEEEcCccchhh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--LFVGVGAS------RVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~--~~~G~~~~------~vr~lF~~A~~~aP~ILfIDEiD~l~~ 375 (723)
+|||+||||||||++|+.+|..++.+++.++++...+ .+.|.-.. .....+.++. ..+++++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 4899999999999999999999999999988865432 12221100 0000000011 146899999998762
Q ss_pred hcCCCCCCCChHHHHHHHHHHHhhcCC--------CCCC------ceEEEEeeCCCC----CCCccccCCCCc
Q 004921 376 QRGAGLGGGNDEREQTINQLLTEMDGF--------SGNS------GVIVLAATNRPD----VLDSALLRPGRF 430 (723)
Q Consensus 376 ~r~~~~~~~~~~~~~~ln~LL~~ld~~--------~~~~------~ViVIaaTN~p~----~LD~aLlrpgRf 430 (723)
......++.++..-.-. .... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23333444444321100 0111 489999999988 89999999 77
No 186
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.98 E-value=2.8e-09 Score=115.87 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=118.6
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH---
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~--- 341 (723)
+++++|.....+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999888777777665532 224579999999999999999997654 579999999865321
Q ss_pred --Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--C------
Q 004921 342 --FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--G------ 404 (723)
Q Consensus 342 --~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--~------ 404 (723)
+.|... ......|..+. ...|||||||.+... .+..|+..++.-. .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCce
Confidence 122110 01122344443 358999999998432 3444454443211 1
Q ss_pred -CCceEEEEeeCCC-------CCCCccccCCCCcccccccCCCCHHHHHH----HHHHHh----cCCCC-----CccccH
Q 004921 405 -NSGVIVLAATNRP-------DVLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHS----RGKAL-----AKDVDF 463 (723)
Q Consensus 405 -~~~ViVIaaTN~p-------~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l----~~~~l-----~~d~dl 463 (723)
..++.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+ +++.++ +.... -.+..+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1247888888763 234455555 552 34556677777743 343333 22111 112235
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 464 EKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 464 ~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
..|....+-.+.++|++++++++..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 6777777777999999999998654
No 187
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=1.7e-09 Score=118.62 Aligned_cols=196 Identities=23% Similarity=0.311 Sum_probs=122.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh----cCCceeeechhhHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAASEFVE 340 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e----~~~p~i~is~s~~~~ 340 (723)
...+++++|.+..-+++++-+..+. .....||++|++||||+++|+.|... .+.||+.+||+.+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 3579999999888777766555421 22346999999999999999998643 467999999987754
Q ss_pred HHh-----hh-------hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----C
Q 004921 341 LFV-----GV-------GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----S 403 (723)
Q Consensus 341 ~~~-----G~-------~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~ 403 (723)
... |. ....-..+|++|..+ +||+|||..+.+ + .+..|+..||.- .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~---~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP-----------E---GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH-----------h---HHHHHHHHHHcCceEecC
Confidence 321 11 122334567766555 999999999843 2 344455555431 1
Q ss_pred ----CCCceEEEEeeCCC--CCCCc--cccCCCCcccccccCCCCHHHHHH----HHH----HHhcCCCCC--ccc--cH
Q 004921 404 ----GNSGVIVLAATNRP--DVLDS--ALLRPGRFDRQVTVDRPDVAGRVK----ILQ----VHSRGKALA--KDV--DF 463 (723)
Q Consensus 404 ----~~~~ViVIaaTN~p--~~LD~--aLlrpgRfd~~I~v~~Pd~~~R~~----Il~----~~l~~~~l~--~d~--dl 463 (723)
....|.+|+|||.. +.+-. .|.++ |+ .+.+.+|+..+|.. ++. .++++.... .+. -+
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 23458889998862 12222 33331 33 34555677777643 223 333333332 221 24
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 464 EKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 464 ~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
..|-...+-.+.++++|+|..++..+.
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 555555555599999999999987653
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=98.98 E-value=6.8e-09 Score=123.79 Aligned_cols=170 Identities=21% Similarity=0.202 Sum_probs=124.1
Q ss_pred eEEeC--CCCCcHHHHHHHHHHhc-----CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCC------CeEEEEcCcc
Q 004921 305 CLLVG--PPGTGKTLLARAVAGEA-----GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKA------PCIVFIDEID 371 (723)
Q Consensus 305 vLL~G--PpGtGKT~LAralA~e~-----~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~a------P~ILfIDEiD 371 (723)
-+..| |.+.|||++|+++|+++ +.+++.+|+++..+ ...+|++...+.... ..|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 56899999987532 234565555443222 3699999999
Q ss_pred chhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 004921 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 451 (723)
Q Consensus 372 ~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~ 451 (723)
.+.. ..++.|+..|+... ..+.+|.+||.++.+.+++++ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt~--------------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9932 36788888888533 457888999999999999998 65 67999999999888888877
Q ss_pred hcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 452 SRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 452 l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+++..+. ++..+..++..+.| +.+...++++.++.. ...|+.+++...
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 7654432 34457888888887 666666666654322 235777666544
No 189
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.98 E-value=4.2e-09 Score=121.27 Aligned_cols=193 Identities=22% Similarity=0.247 Sum_probs=122.7
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH--
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-- 341 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~-- 341 (723)
++.+++|.....+.+.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578899999888887777665432 24579999999999999999998764 579999999876432
Q ss_pred ---Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------
Q 004921 342 ---FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------- 403 (723)
Q Consensus 342 ---~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-------- 403 (723)
..|... ......|+.|. ...|||||||.+... .+..|+..++.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCc
Confidence 122100 00112354443 358999999999432 4445555443211
Q ss_pred -CCCceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHHHH----HHHHHhc----C-----CCCCcccc
Q 004921 404 -GNSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSR----G-----KALAKDVD 462 (723)
Q Consensus 404 -~~~~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l~----~-----~~l~~d~d 462 (723)
...++-+|++||..- .+.+.|.. |+. .+.+..|...+|.+ +++++++ + ..+ .+.-
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~-s~~a 393 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL-SPAA 393 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC-CHHH
Confidence 123578899998742 13333332 331 45677788877754 2333322 1 112 2223
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 463 FEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 463 l~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
+..|....+-.+.++|++++++|+..+.
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 5777788887799999999999987654
No 190
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.2e-09 Score=108.33 Aligned_cols=137 Identities=27% Similarity=0.443 Sum_probs=85.0
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEEEeeC----CCCCCCccccCCCCc
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAATN----RPDVLDSALLRPGRF 430 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlrpgRf 430 (723)
.||||||||.++.+.+. ++.+-.++.++..||-.++|.. ..+.+++|++-. .|++|-|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~--g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS--GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCC--CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999876543 2224456678888888887753 234688888754 4777888885 599
Q ss_pred ccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCC----CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 431 DRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG----FTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 431 d~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G----~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.-.+++...+.++-..||..--. .+ -..+..| -.|+| |+-..|..+..-|.. .......|...-+...+
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~--sL--ikQY~aL-lkTE~v~l~FtddaI~~iAeiA~~--vN~~~ENIGARRLhTvl 400 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKA--SL--IKQYKAL-LKTEGVELEFTDDAIKRIAEIAYQ--VNEKTENIGARRLHTVL 400 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcch--HH--HHHHHHH-HhhcCeeEEecHHHHHHHHHHHHH--hcccccchhHHHHHHHH
Confidence 99999999999998888741000 00 0001111 12333 555666666554432 22334456665566666
Q ss_pred HHHH
Q 004921 507 ERII 510 (723)
Q Consensus 507 ~~~~ 510 (723)
++++
T Consensus 401 ErlL 404 (444)
T COG1220 401 ERLL 404 (444)
T ss_pred HHHH
Confidence 5554
No 191
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=6.2e-09 Score=113.01 Aligned_cols=161 Identities=21% Similarity=0.287 Sum_probs=108.1
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeee-chhhHHH--------HH-h----hhhhhHHHHHHHHH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-AASEFVE--------LF-V----GVGASRVRDLFEKA 357 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~i-s~s~~~~--------~~-~----G~~~~~vr~lF~~A 357 (723)
.+.|.++||+||+|+|||++|+++|+.+.+. .-.+ +|..+.. .. . .-+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999976431 1001 0111100 00 0 11335677766665
Q ss_pred Hc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccc
Q 004921 358 KS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQ 433 (723)
Q Consensus 358 ~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~ 433 (723)
.. ....|++||++|.+.. ...|.||+.|+. +..++++|.+|+.++.|.|.+++ |+ ..
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~--------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR--------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQ 159 (328)
T ss_pred hhccccCCCeEEEECChhhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-ee
Confidence 43 3356999999999842 478999999985 44678888999999999999999 66 45
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHH
Q 004921 434 VTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 434 I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv 482 (723)
+.|++|+.++..+.+...... ..+.+...++....| ++.....+.
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l~ 204 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQLH 204 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHHH
Confidence 999999999888888755321 122234455666665 555444443
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.6e-09 Score=114.06 Aligned_cols=154 Identities=23% Similarity=0.388 Sum_probs=110.9
Q ss_pred HHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec-hhhHHHHHhhhhhhHHHHHHHHHHcCCC
Q 004921 284 VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA-ASEFVELFVGVGASRVRDLFEKAKSKAP 362 (723)
Q Consensus 284 iv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is-~s~~~~~~~G~~~~~vr~lF~~A~~~aP 362 (723)
++...+++++ ..-.++||+||||+|||.||-.+|...+.||+.+- ..+.++.........++..|+.|.+..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 4444555554 23458999999999999999999999999999764 4444443333345678999999999888
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC-ceEEEEeeCCCCCCCc-cccCCCCcccccccCCCC
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS-GVIVLAATNRPDVLDS-ALLRPGRFDRQVTVDRPD 440 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~-~ViVIaaTN~p~~LD~-aLlrpgRfd~~I~v~~Pd 440 (723)
+||++|+|+.|..-- ..+..+.+.++..|+..+....+.+ +.+|++||.+.+.|.. .++. .|+..+.+|...
T Consensus 600 siivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT 673 (744)
T ss_pred eEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence 999999999986532 2345567778888888888766554 4677777777655432 3444 688899998765
Q ss_pred H-HHHHHHHH
Q 004921 441 V-AGRVKILQ 449 (723)
Q Consensus 441 ~-~~R~~Il~ 449 (723)
. ++..+++.
T Consensus 674 ~~~~~~~vl~ 683 (744)
T KOG0741|consen 674 TGEQLLEVLE 683 (744)
T ss_pred chHHHHHHHH
Confidence 4 55555554
No 193
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=1.4e-09 Score=107.44 Aligned_cols=109 Identities=33% Similarity=0.425 Sum_probs=75.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC----ceeeechhhHHHHHhhhhhhHHHHHHHH------HHcCCCeEEEEcCccc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV----PFFSCAASEFVELFVGVGASRVRDLFEK------AKSKAPCIVFIDEIDA 372 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~----p~i~is~s~~~~~~~G~~~~~vr~lF~~------A~~~aP~ILfIDEiD~ 372 (723)
..+||.||+|+|||.+|+++|..+.. +++.++++++.+. +.....+..++.. .... .||||||||.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 36899999999999999999999996 9999999988761 1111122222211 1111 3999999999
Q ss_pred hhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCceEEEEeeCCCC
Q 004921 373 VGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVIVLAATNRPD 418 (723)
Q Consensus 373 l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~~ViVIaaTN~p~ 418 (723)
+.+.. ..+.+.....+++.||+.||+-. ...++++|+|+|.-.
T Consensus 80 a~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 98751 22334455678888888886431 124689999999754
No 194
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.95 E-value=2.9e-09 Score=125.98 Aligned_cols=208 Identities=19% Similarity=0.273 Sum_probs=128.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH-
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE- 340 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~- 340 (723)
..+|++++|.+...+++.+.+..+.. .+..|||+|++||||+++|++|.... +.||+.++|..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999998877666655544321 23469999999999999999998764 57999999976532
Q ss_pred ----HHhhhh--h--hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----CC--
Q 004921 341 ----LFVGVG--A--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----GN-- 405 (723)
Q Consensus 341 ----~~~G~~--~--~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~~-- 405 (723)
.+.|.. . ......|+.| ....||||||+.+... .+..|+..++.-. ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCce
Confidence 222211 0 0001123333 3469999999998432 3444555443211 11
Q ss_pred --CceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhcC--------CCCCccccHH
Q 004921 406 --SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG--------KALAKDVDFE 464 (723)
Q Consensus 406 --~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~~----Il~~~l~~--------~~l~~d~dl~ 464 (723)
-++.+|++|+..- ..+...|+|.. .+.+..|...+|.+ +++.+++. ..+ .+..+.
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~-s~~a~~ 529 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKI-DDDALA 529 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCc-CHHHHH
Confidence 1467899988642 12222234421 45677788887743 33333321 112 222367
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 465 KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 465 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.|....+..+.++|+++++.+...+ ....|+.+|+...+
T Consensus 530 ~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 530 RLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 7778887779999999999987543 34567877776554
No 195
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.95 E-value=1.2e-08 Score=116.09 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=128.1
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC------------------
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG------------------ 327 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~------------------ 327 (723)
..|.++.|...+++.+. + .......++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~----l----------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE----I----------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh----e----------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 37889999877765542 1 112235699999999999999999987431
Q ss_pred ----------CceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHH
Q 004921 328 ----------VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT 397 (723)
Q Consensus 328 ----------~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~ 397 (723)
.||.....+--....+|.+...-...+..|... +|||||++.+.+ .++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~--------------~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER--------------RTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH--------------HHHHHHHH
Confidence 112111111111112333222223455666554 999999987732 35566666
Q ss_pred hhcCCC-----------CCCceEEEEeeCCCC---------------------CCCccccCCCCcccccccCCCCHHH--
Q 004921 398 EMDGFS-----------GNSGVIVLAATNRPD---------------------VLDSALLRPGRFDRQVTVDRPDVAG-- 443 (723)
Q Consensus 398 ~ld~~~-----------~~~~ViVIaaTN~p~---------------------~LD~aLlrpgRfd~~I~v~~Pd~~~-- 443 (723)
.|+.-. ...++.+|+|+|... .|...++. |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 553221 134689999999753 36678888 999999999885321
Q ss_pred ------------HHHHHHH--H--hcCCCCCcccc-------------HH---HHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 004921 444 ------------RVKILQV--H--SRGKALAKDVD-------------FE---KISRRTPGFTGADLQNLMNEAAILAAR 491 (723)
Q Consensus 444 ------------R~~Il~~--~--l~~~~l~~d~d-------------l~---~La~~t~G~sgadL~~lv~~A~~~A~r 491 (723)
|..+... . .+...+...+. .. .-+....|.|.+....+++-|..+|..
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1111110 0 00001011110 01 112234478999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHH
Q 004921 492 RDLKEISKDEISDALER 508 (723)
Q Consensus 492 ~~~~~I~~edl~~Al~~ 508 (723)
++++.|+.+|+.+|+.-
T Consensus 475 ~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 475 DQSDIITRQHLQEAVSY 491 (506)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 99999999999999863
No 196
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.94 E-value=9.2e-09 Score=122.63 Aligned_cols=194 Identities=19% Similarity=0.289 Sum_probs=121.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
+..|++++|.....+.+.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 45789999999988887776665432 23479999999999999999998754 679999999765321
Q ss_pred -----Hhhhh-------hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC------
Q 004921 342 -----FVGVG-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------ 403 (723)
Q Consensus 342 -----~~G~~-------~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~------ 403 (723)
..|.. .......|+.+. ..+|||||||.+... ....|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCC
Confidence 22210 011123354443 369999999998432 4444555443211
Q ss_pred ---CCCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhcC------CCC--Cccc
Q 004921 404 ---GNSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG------KAL--AKDV 461 (723)
Q Consensus 404 ---~~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~~----Il~~~l~~------~~l--~~d~ 461 (723)
...++.+|++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++.. ... -...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1235788999887421 1112223322 45677788888755 33333321 111 1222
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 462 DFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 462 dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
.+..|....+-.+.++|++++++|+..
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 367777777777999999999998754
No 197
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.93 E-value=7.4e-09 Score=119.40 Aligned_cols=204 Identities=21% Similarity=0.259 Sum_probs=124.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
..+|++++|.....+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 35899999998876666554443221 23459999999999999999986543 479999999865432
Q ss_pred -----Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----C-
Q 004921 342 -----FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----S- 403 (723)
Q Consensus 342 -----~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~- 403 (723)
..|... .....+|+.|. ...|||||||.+... ....|+..++.- .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCC
Confidence 122111 11123455554 358999999998432 334444444321 1
Q ss_pred ---CCCceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHHHH----HHHHHh----cCC-----CCCcc
Q 004921 404 ---GNSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHS----RGK-----ALAKD 460 (723)
Q Consensus 404 ---~~~~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l----~~~-----~l~~d 460 (723)
...++.||++|+.+- .+.+.|.. |+. .+.+..|...+|.+ +++.++ ... .+.++
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 123467888887642 23344444 442 36666777777753 222322 221 22222
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 461 VDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 461 ~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
-+..|....+..+.++|++++.+|...+ ....|+.+|+
T Consensus 410 -a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 -LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred -HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 3566777767779999999999886543 3456777664
No 198
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.8e-09 Score=116.55 Aligned_cols=210 Identities=24% Similarity=0.343 Sum_probs=119.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----------------
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG----------------- 327 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~----------------- 327 (723)
...|.||+|++.+|..|.....- -+++|++||||||||++|+-+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999988765433 35799999999999999998876321
Q ss_pred ------------CceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 328 ------------VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 328 ------------~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
.||..-.-+--....+|.+...--.-... ....|||+||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsL---AH~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISL---AHNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceee---ecCCEEEeeccchh--------------hHHHHHHH
Confidence 11211111111111122110000000001 11359999999655 34688888
Q ss_pred HHhhcCCCC-----------CCceEEEEeeCCCC-----------------------CCCccccCCCCcccccccCCCCH
Q 004921 396 LTEMDGFSG-----------NSGVIVLAATNRPD-----------------------VLDSALLRPGRFDRQVTVDRPDV 441 (723)
Q Consensus 396 L~~ld~~~~-----------~~~ViVIaaTN~p~-----------------------~LD~aLlrpgRfd~~I~v~~Pd~ 441 (723)
.+-|+.-.- ...+.+|+++|..- .|...|++ |+|..+.++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 887764311 12467888888521 23344555 9999999988774
Q ss_pred HHH--------------HHHHHHH----hcCCCC--Cc----------------cccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 442 AGR--------------VKILQVH----SRGKAL--AK----------------DVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 442 ~~R--------------~~Il~~~----l~~~~l--~~----------------d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
.++ ..+++.+ .+...+ .. +.++...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 432 1222211 111111 11 11222233334456777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 004921 486 AILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 486 ~~~A~r~~~~~I~~edl~~Al~ 507 (723)
..+|-..+...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 7777777777777777777764
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.1e-08 Score=111.53 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=105.7
Q ss_pred ccccccc-chHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce--e---eechhhHHH
Q 004921 267 TFADVAG-ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--F---SCAASEFVE 340 (723)
Q Consensus 267 ~f~dv~G-~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~--i---~is~s~~~~ 340 (723)
.|+.|.| ++.+++.|+..+.. .++|..+||+||+|+||+++|+++|+.+-++- - .-.|.....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88888877776542 25678899999999999999999999763221 0 000111000
Q ss_pred H------------Hhh--hhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC
Q 004921 341 L------------FVG--VGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (723)
Q Consensus 341 ~------------~~G--~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~ 402 (723)
. ..| .+...+|++.+.+.. ....|++|||+|.+. ....|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEE- 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcC-
Confidence 0 001 122356666555432 234699999999883 2377899999984
Q ss_pred CCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 004921 403 SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 403 ~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~ 450 (723)
....+++|.+|+.++.|.+.+++ |+ .+++|.+|+.++..++++.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 44566777788889999999999 54 5799999999887777753
No 200
>PRK08116 hypothetical protein; Validated
Probab=98.85 E-value=1.4e-08 Score=107.46 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=75.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhh----hhhHHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV----GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~----~~~~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
+.|++|+|+||||||+||.++++++ +.++++++.+++...+... ......++++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4589999999999999999999975 8899999998887654321 1112223444333 33599999996421
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC-CC----CCccccCCCCc---ccccccCCCCH
Q 004921 375 RQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP-DV----LDSALLRPGRF---DRQVTVDRPDV 441 (723)
Q Consensus 375 ~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p-~~----LD~aLlrpgRf---d~~I~v~~Pd~ 441 (723)
..++.... |...++.... .+..+|.|||.+ +. ++..+.+ |+ ...|.+..||.
T Consensus 192 ---------~t~~~~~~---l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREK---VYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHH---HHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12333333 3344443221 223477777764 22 4566666 53 23456666664
No 201
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.83 E-value=2.1e-08 Score=108.90 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=57.9
Q ss_pred cc-ccccchHhHHHHHHHHHHhcCchhhhhhCCC-CCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeeech---
Q 004921 268 FA-DVAGADQAKLELQEVVDFLKNPDKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSCAA--- 335 (723)
Q Consensus 268 f~-dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~-~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~is~--- 335 (723)
|+ ++.|+++++.++ +.+++... .|.. ..+.++|+||||+|||+||++|++.++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~l---v~~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERF---VNYFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHH---HHHHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 66 899999996555 44544332 1222 3467899999999999999999999976 8999887
Q ss_pred -hhHHHHHhhhhhhHHHHHHHH
Q 004921 336 -SEFVELFVGVGASRVRDLFEK 356 (723)
Q Consensus 336 -s~~~~~~~G~~~~~vr~lF~~ 356 (723)
+.+.+..++......|..|.+
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHH
Confidence 666665555555555554443
No 202
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-08 Score=110.47 Aligned_cols=99 Identities=31% Similarity=0.532 Sum_probs=72.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-HHhhhh-hhHHHHHHHHHH----cCCCeEEEEcCccchhhhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGVG-ASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~~~G~~-~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r 377 (723)
+|||.||+|+|||+||+.||+-+++||..++|..+.. .|+|+. +.-+..++..|. +....|+||||+|.|..+-
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998865 488865 445666665553 2334699999999998543
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCC
Q 004921 378 GAGLGGGNDEREQTINQLLTEMDGF 402 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~ld~~ 402 (723)
.+-...-+-..+.+...||..++|-
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred ccccccccccchhHHHHHHHHhccc
Confidence 2211111222355777888887764
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.80 E-value=4.7e-08 Score=106.66 Aligned_cols=157 Identities=27% Similarity=0.457 Sum_probs=102.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------CCceeee----
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSC---- 333 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~i---- 333 (723)
...|.-++|++..|..|--- .-+|. -.|+||.|+.|||||+++|+||.-+ |+||-+=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46799999999998766211 11222 2489999999999999999999865 3332210
Q ss_pred --chhhHHHH-------------------HhhhhhhHH------H------------HHHHHHHcCCCeEEEEcCccchh
Q 004921 334 --AASEFVEL-------------------FVGVGASRV------R------------DLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 334 --s~s~~~~~-------------------~~G~~~~~v------r------------~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
.|.++..+ -.|.++.++ . .++.+|. ..||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEecccccc
Confidence 11111111 112222211 1 1222222 2599999998773
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHhhcC---------C--CCCCceEEEEeeCCCC-CCCccccCCCCcccccccCCC-CH
Q 004921 375 RQRGAGLGGGNDEREQTINQLLTEMDG---------F--SGNSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRP-DV 441 (723)
Q Consensus 375 ~~r~~~~~~~~~~~~~~ln~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~P-d~ 441 (723)
.++++.||..+.. + ....++++|+|.|.-+ .|-|.|+. ||...+.+..| +.
T Consensus 158 --------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 158 --------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred --------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 3477777776643 1 2234689999999764 68999999 99999999877 67
Q ss_pred HHHHHHHHHHh
Q 004921 442 AGRVKILQVHS 452 (723)
Q Consensus 442 ~~R~~Il~~~l 452 (723)
++|.+|.+...
T Consensus 222 ~~rv~Ii~r~~ 232 (423)
T COG1239 222 EERVEIIRRRL 232 (423)
T ss_pred HHHHHHHHHHH
Confidence 88988887554
No 204
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.77 E-value=3.8e-08 Score=96.87 Aligned_cols=132 Identities=29% Similarity=0.440 Sum_probs=80.2
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-----H
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-----F 342 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~-----~ 342 (723)
|+|.+...+++.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|+.+-+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4677777666666555432 224679999999999999999998865 579999999866432 2
Q ss_pred hhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----CC----CC
Q 004921 343 VGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SG----NS 406 (723)
Q Consensus 343 ~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~~----~~ 406 (723)
.|... .....+|++|... +||||||+.+... ++..|+..|+.- .. ..
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHH--------------HHHHHHHHHhhchhccccccccccc
Confidence 33211 1123678887765 9999999999542 444555554421 11 22
Q ss_pred ceEEEEeeCCCCCCCccccCCCCccc
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDR 432 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~ 432 (723)
++.+|++|+.+ |.. +...|+|..
T Consensus 134 ~~RiI~st~~~--l~~-~v~~g~fr~ 156 (168)
T PF00158_consen 134 DVRIIASTSKD--LEE-LVEQGRFRE 156 (168)
T ss_dssp -EEEEEEESS---HHH-HHHTTSS-H
T ss_pred cceEEeecCcC--HHH-HHHcCCChH
Confidence 68999999963 333 333456643
No 205
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.75 E-value=1e-07 Score=100.17 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=124.0
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
-++.++.+-+++|+++++++...+.++.+.- +.| ++|+|||||||||....+.|..+-.|.-+-+ -
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~--m 95 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTS--M 95 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchh--H
Confidence 4555677789999999999887776663322 223 7999999999999999999998866511111 1
Q ss_pred HHHHH----hhhhhhH-HHHHHHHHHc-------CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 004921 338 FVELF----VGVGASR-VRDLFEKAKS-------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN 405 (723)
Q Consensus 338 ~~~~~----~G~~~~~-vr~lF~~A~~-------~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~ 405 (723)
+.+.- .|-..-+ --..|+.++. ..+..+++||.|++.. ...|+|-+.++.+..+
T Consensus 96 ~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek~t~n 161 (360)
T KOG0990|consen 96 LLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEKYTAN 161 (360)
T ss_pred HHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHHhccc
Confidence 11111 1111111 1234665553 2678999999999854 3677777778777665
Q ss_pred CceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcccc-HHHHHhhCCCCCHHHHHHHHHH
Q 004921 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD-FEKISRRTPGFTGADLQNLMNE 484 (723)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~d-l~~La~~t~G~sgadL~~lv~~ 484 (723)
.. +...+|.+..+.|++.+ ||. .+.+.+.+...-...+.++++........+ ...+++. +-.|+...++.
T Consensus 162 ~r--F~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 TR--FATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRVALNY 232 (360)
T ss_pred eE--EEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHHHHHH
Confidence 54 44667999999999998 774 456666666666667777765544332221 2334443 33477666665
Q ss_pred HHHHH
Q 004921 485 AAILA 489 (723)
Q Consensus 485 A~~~A 489 (723)
....+
T Consensus 233 Lqs~~ 237 (360)
T KOG0990|consen 233 LQSIL 237 (360)
T ss_pred HHHHH
Confidence 54433
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.6e-08 Score=107.29 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=96.7
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee---e---echhhH--HHH-------Hh--------------------
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF---S---CAASEF--VEL-------FV-------------------- 343 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i---~---is~s~~--~~~-------~~-------------------- 343 (723)
.+.|.++||+||+|+||+++|+++|+.+.+..- . -.|... ... ++
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 378899999999999999999999987644210 0 011100 000 00
Q ss_pred -------------hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 004921 344 -------------GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (723)
Q Consensus 344 -------------G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~ 406 (723)
.-+...+|++.+.+.. ..-.|++||++|.+. ....|.||+.++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCc
Confidence 0123456666655432 223599999999984 347899999999 5667
Q ss_pred ceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 004921 407 GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 451 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~ 451 (723)
++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 78999999999999999999 66 68999999999888888653
No 207
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.72 E-value=5.6e-08 Score=110.00 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=121.3
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV 343 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~ 343 (723)
.+.+++|.....+.+.+.+..+.. ....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456788877776666655543321 23469999999999999999997754 57999999987643221
Q ss_pred -----hhh-------hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----CC--
Q 004921 344 -----GVG-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SG-- 404 (723)
Q Consensus 344 -----G~~-------~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~~-- 404 (723)
|.. .......|..| ...+|||||||.+... .+..|+..++.- ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCCc
Confidence 110 00011122222 3469999999998432 344444444321 11
Q ss_pred --CCceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHHHH----HHHHHhcC------C---CCCcccc
Q 004921 405 --NSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSRG------K---ALAKDVD 462 (723)
Q Consensus 405 --~~~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l~~------~---~l~~d~d 462 (723)
..++.+|++|+..- .+.+.|.. |+ ..+.+..|...+|.+ +++.+++. . .+ .+..
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~-~~~a 345 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF-TDDA 345 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC-CHHH
Confidence 12578888887642 23333333 33 245667788877764 33333321 1 12 2223
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 463 FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 463 l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
+..|....+..+.++|++++++|+..+ ....|+.+++
T Consensus 346 ~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 346 LRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 677778887779999999999987543 3345666654
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.70 E-value=4.4e-08 Score=95.87 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=85.8
Q ss_pred cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee----echhhHHHH-------
Q 004921 273 GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS----CAASEFVEL------- 341 (723)
Q Consensus 273 G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~----is~s~~~~~------- 341 (723)
|++++.+.|.+.+.. .+.|..+||+||+|+||+++|+++|+.+-..-.. -.|......
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 667777777665543 2567889999999999999999999976321111 111111100
Q ss_pred --H---h----hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCce
Q 004921 342 --F---V----GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV 408 (723)
Q Consensus 342 --~---~----G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~V 408 (723)
+ . .-....++++.+.+.. ....|++|||+|.+. ....|.||..|+. ...++
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEe--pp~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEE--PPENT 133 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TTTTE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcC--CCCCE
Confidence 0 0 1123456666655433 235699999999984 3478999999994 45678
Q ss_pred EEEEeeCCCCCCCccccCCCCcccccccCC
Q 004921 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 409 iVIaaTN~p~~LD~aLlrpgRfd~~I~v~~ 438 (723)
++|.+|+.++.|-+.+++ |+ ..+.+++
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 999999999999999999 55 3455543
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.68 E-value=2.4e-07 Score=96.56 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred Cccccccc-cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH
Q 004921 265 GVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (723)
Q Consensus 265 ~~~f~dv~-G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~ 340 (723)
..+|++.. +.+..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +..+++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 45777764 33444444444444443211 113489999999999999999999987 78899999998887
Q ss_pred HHhhhh---hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 341 LFVGVG---ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 341 ~~~G~~---~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
.+.... ......+++... ..++|+|||++... ..++...++.+++..-- ....-+|.+||..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 544321 112234454443 46799999998752 23445556666666422 1123467777864
No 210
>PRK12377 putative replication protein; Provisional
Probab=98.67 E-value=2.7e-07 Score=96.40 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=65.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhh--hHHHHHHHHHHcCCCeEEEEcCccchhhh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGA--SRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~--~~vr~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
..+++|+||||||||+||.|+++++ +..+++++..++.......-. ....++++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3589999999999999999999977 678888888888765432110 1122334443 345799999997652
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
.+.....++.+++..-.. ...-+|.|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 133445566666654321 112356778864
No 211
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=3.2e-07 Score=104.81 Aligned_cols=193 Identities=17% Similarity=0.275 Sum_probs=126.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc----------CCceeeechhhHHHH---H-------hhh------hhhHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASEFVEL---F-------VGV------GASRVRDLFEKA 357 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~s~~~~~---~-------~G~------~~~~vr~lF~~A 357 (723)
.+.++|-||||||.+++.+..++ ..+++.+|+-.+.+. | .|. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999998754 357788887554321 2 111 122233333311
Q ss_pred -HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC----ccccCCCCcc-
Q 004921 358 -KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD----SALLRPGRFD- 431 (723)
Q Consensus 358 -~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD----~aLlrpgRfd- 431 (723)
-...++||+|||+|.|..+. +.++..++.+.- ..+.+++||+..|..+... ...-+ |++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 13457999999999997643 336666665543 3456788888888766422 22223 443
Q ss_pred cccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHhCC-------CCCCHHHH
Q 004921 432 RQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGF--TGADLQNLMNEAAILAARRDL-------KEISKDEI 502 (723)
Q Consensus 432 ~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~--sgadL~~lv~~A~~~A~r~~~-------~~I~~edl 502 (723)
..+.|.+.+..+..+|+...+++.......-.+-+|++.... +.+....+|++|...|..+.. ..++..|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 478999999999999999998876433332344455554433 446677889999888877655 45677788
Q ss_pred HHHHHHHHc
Q 004921 503 SDALERIIA 511 (723)
Q Consensus 503 ~~Al~~~~~ 511 (723)
.+|+...+.
T Consensus 649 ~~Ai~em~~ 657 (767)
T KOG1514|consen 649 MEAINEMLA 657 (767)
T ss_pred HHHHHHHhh
Confidence 887776554
No 212
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.5e-07 Score=100.14 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=94.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeee-chh--------hHH--HHHhh--hhhhHHHHHHHHHHc
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-AAS--------EFV--ELFVG--VGASRVRDLFEKAKS 359 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~i-s~s--------~~~--~~~~G--~~~~~vr~lF~~A~~ 359 (723)
+.|.++||+||+|+||+++|+++|+.+-+. .-.+ +|. ++. ....| -+...+|++-+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 568899999999999999999999866321 1011 011 110 00001 134566766555543
Q ss_pred ----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccc
Q 004921 360 ----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVT 435 (723)
Q Consensus 360 ----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~ 435 (723)
..-.|++||++|.+. ....|.||+.++ ++..++++|.+|+.++.|.|.+++ |+ ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT--------------EAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 334699999999983 347899999999 466678899999999999999999 65 5789
Q ss_pred cCCCCHHHHHHHHHHH
Q 004921 436 VDRPDVAGRVKILQVH 451 (723)
Q Consensus 436 v~~Pd~~~R~~Il~~~ 451 (723)
|++|+.++..+.|...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999998887777654
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.66 E-value=1.3e-08 Score=94.58 Aligned_cols=111 Identities=30% Similarity=0.367 Sum_probs=59.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechh-hHH-HHHhhhhhhHHH-HHHHHHHc-CCCeEEEEcCccchhhhcCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS-EFV-ELFVGVGASRVR-DLFEKAKS-KAPCIVFIDEIDAVGRQRGA 379 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s-~~~-~~~~G~~~~~vr-~lF~~A~~-~aP~ILfIDEiD~l~~~r~~ 379 (723)
++||+|+||+|||++|+++|+..+..|..+.+. ++. +...|...-... ..|.-.+. --..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 489999999999999999999999999988764 332 222332100000 00000000 0014999999977643
Q ss_pred CCCCCChHHHHHHHHHHHhhcCC---------CCCCceEEEEeeCCCC-----CCCccccCCCCc
Q 004921 380 GLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVLAATNRPD-----VLDSALLRPGRF 430 (723)
Q Consensus 380 ~~~~~~~~~~~~ln~LL~~ld~~---------~~~~~ViVIaaTN~p~-----~LD~aLlrpgRf 430 (723)
++++.||+.|..- .-...++||||-|..+ .|+++++. ||
T Consensus 77 ----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4677777776532 2234689999999876 48888887 77
No 214
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.66 E-value=2.9e-07 Score=109.71 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=87.6
Q ss_pred ccccchHhHHHHHHHHHHhcCchhh-----------hhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-------Ccee
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKY-----------TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-------VPFF 331 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~-----------~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-------~p~i 331 (723)
.|.|++.+|..| ++..+....+. .....+-..+|||.|+||||||.+|+++++... .++.
T Consensus 451 ~I~G~e~vK~ai--lL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGL--LCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHH--HHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 478999998766 22323222111 011234445799999999999999999988542 3444
Q ss_pred eechhhHHHHHh-hhhhhHH-HHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC------
Q 004921 332 SCAASEFVELFV-GVGASRV-RDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------ 403 (723)
Q Consensus 332 ~is~s~~~~~~~-G~~~~~v-r~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~------ 403 (723)
.+.+..+..... ..+...+ ...+..| ...++||||+|.+.. .....|++.|+.-.
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~--------------~~Q~aLlEaMEqqtIsI~Ka 591 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHN--------------ESRLSLYEVMEQQTVTIAKA 591 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCCH--------------HHHHHHHHHHhCCEEEEecC
Confidence 444433221000 0010000 0011112 235999999999843 23444555554221
Q ss_pred -----CCCceEEEEeeCCCC-------------CCCccccCCCCccccc-ccCCCCHHH
Q 004921 404 -----GNSGVIVLAATNRPD-------------VLDSALLRPGRFDRQV-TVDRPDVAG 443 (723)
Q Consensus 404 -----~~~~ViVIaaTN~p~-------------~LD~aLlrpgRfd~~I-~v~~Pd~~~ 443 (723)
-+..+.||||+|... .|+++|++ |||..+ -++.|+.+.
T Consensus 592 Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDT 648 (915)
T ss_pred CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHH
Confidence 134689999999742 37899999 999875 445666543
No 215
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.64 E-value=8.2e-07 Score=92.41 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFEKISRRTPGFTGADLQNLMNEAAILAARRDLK 495 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~-dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 495 (723)
|.-|+-.|+. |. ..|...+++.++.++||+..+......-+. .+..|......-|-+...+|+..|.+.+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4457777776 54 467777889999999999988665443222 2455555555667888889999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 004921 496 EISKDEISDALERII 510 (723)
Q Consensus 496 ~I~~edl~~Al~~~~ 510 (723)
.+..+|+..+..-.+
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 999999999876554
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3e-07 Score=100.24 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=105.1
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCC-------ceeeec-hhhHHH--------HH-h----hhhhhHHHHHHHHH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGV-------PFFSCA-ASEFVE--------LF-V----GVGASRVRDLFEKA 357 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~-------p~i~is-~s~~~~--------~~-~----G~~~~~vr~lF~~A 357 (723)
.+.|.++||+||+|+||+++|.++|..+-+ +.-.+. |..+.. .. . .-+...+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 367889999999999999999999986632 111111 111100 00 0 01234566666555
Q ss_pred Hc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccc
Q 004921 358 KS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQ 433 (723)
Q Consensus 358 ~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~ 433 (723)
.. ..-.|++||++|.+. ....|.||+.|+ ++..+.++|..|+.++.|.|.+++ |+. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 42 334699999999983 347899999999 466778999999999999999999 664 6
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHH
Q 004921 434 VTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNL 481 (723)
Q Consensus 434 I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~l 481 (723)
+.|++|+.++..+.|.... ..+ ..+...+++.+.| ++.....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G-~~~~Al~l 204 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAG-APGAALAL 204 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC-CHHHHHHH
Confidence 8999999888777765321 222 1223455556655 55444344
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.61 E-value=2.1e-07 Score=108.78 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=63.1
Q ss_pred ceEEEEeeCCC--CCCCccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhcCCC---CCcccc---HHHHHh---h
Q 004921 407 GVIVLAATNRP--DVLDSALLRPGRFD---RQVTVDR--P-DVAGRVKILQVHSRGKA---LAKDVD---FEKISR---R 469 (723)
Q Consensus 407 ~ViVIaaTN~p--~~LD~aLlrpgRfd---~~I~v~~--P-d~~~R~~Il~~~l~~~~---l~~d~d---l~~La~---~ 469 (723)
++.||+++|+. ..+||+|.. ||. ..+.+.. + +.+.+..+++...+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889998885 457899988 774 3444432 2 34555666654332211 111222 222222 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 470 TPG------FTGADLQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 470 t~G------~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
..| ...++|.+++++|...|..++.+.++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 347899999999999999988889999999888754
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=6.2e-07 Score=96.90 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=103.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCce----eeechhhHHHH-------Hh-------h------hhhhHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPF----FSCAASEFVEL-------FV-------G------VGASRVRDLFE 355 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~----i~is~s~~~~~-------~~-------G------~~~~~vr~lF~ 355 (723)
+.|.++||+||+|+||+++|.++|+.+-+.- -.+.+..+... ++ | -+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 6788999999999999999999998663210 01111111110 00 1 12445666666
Q ss_pred HHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcc
Q 004921 356 KAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFD 431 (723)
Q Consensus 356 ~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd 431 (723)
.+... .-.|++||++|.+. ....|.||+.|+. ...++++|..|+.++.|-|.+++ |+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC- 164 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC- 164 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-
Confidence 55432 23699999999983 3478999999984 44567888888999999999999 65
Q ss_pred cccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHH
Q 004921 432 RQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 432 ~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv 482 (723)
..+.|+.|+.++..+.|... ..+ ..+...++....| ++.....++
T Consensus 165 q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G-~p~~A~~~~ 209 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG-HPGLAAQWL 209 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC-CHHHHHHHh
Confidence 57889999998777766532 221 1223355555555 444443333
No 219
>PRK08181 transposase; Validated
Probab=98.60 E-value=2.4e-07 Score=97.92 Aligned_cols=100 Identities=20% Similarity=0.332 Sum_probs=66.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhh-hhhHHHHHHHHHHcCCCeEEEEcCccchhhhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r 377 (723)
..+++|+||||||||+||.+++.++ |..+++++..++.+.+... ........++... .+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC--
Confidence 3579999999999999999998754 7888999998888765321 1223334455443 457999999987632
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+......+-+++..... . + -+|.|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 22334455555554322 1 1 366777764
No 220
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.59 E-value=3.1e-07 Score=104.72 Aligned_cols=207 Identities=20% Similarity=0.254 Sum_probs=125.6
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH-
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF- 342 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~- 342 (723)
.+.+++|.....+.+.+.+..+.. ....+||+|++|||||++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 456788887776666655543322 23469999999999999999998865 5799999997663321
Q ss_pred ----hhhhhh-------HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----C--
Q 004921 343 ----VGVGAS-------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----G-- 404 (723)
Q Consensus 343 ----~G~~~~-------~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~-- 404 (723)
.|.... .....|+.+ ....|||||+|.+... .+..|+..++.-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCCC
Confidence 111100 001122222 2458999999998432 3345555444211 1
Q ss_pred --CCceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHHHH----HHHHHhcC----C--CC--CccccH
Q 004921 405 --NSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGRVK----ILQVHSRG----K--AL--AKDVDF 463 (723)
Q Consensus 405 --~~~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~----Il~~~l~~----~--~l--~~d~dl 463 (723)
...+.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++.+++. . .. ..+..+
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12467888887632 24444444 442 35555676666643 44444321 1 11 122346
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 464 EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 464 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
..|....+..+.++|+++++++...+ ....|+.+|+...+
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 77888888889999999999987553 34578888875443
No 221
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.59 E-value=5.3e-07 Score=102.27 Aligned_cols=205 Identities=19% Similarity=0.289 Sum_probs=121.7
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH-
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF- 342 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~- 342 (723)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 345677776655555444333221 23469999999999999999997754 5799999997664321
Q ss_pred ----hhhhhh-------HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----CC--
Q 004921 343 ----VGVGAS-------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SG-- 404 (723)
Q Consensus 343 ----~G~~~~-------~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~~-- 404 (723)
.|.... .....|..+ ...+|||||||.+... .+..|+..++.- ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCCc
Confidence 111000 001123222 2359999999998432 344555554421 11
Q ss_pred --CCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhcC------C---CCCcccc
Q 004921 405 --NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRVK----ILQVHSRG------K---ALAKDVD 462 (723)
Q Consensus 405 --~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~~----Il~~~l~~------~---~l~~d~d 462 (723)
..++.+|++||..-. .+.+.|+|.. .+.+..|...+|.+ +++.++.. . .+ .+..
T Consensus 274 ~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~-~~~a 349 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDI-DPMA 349 (457)
T ss_pred eeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCc-CHHH
Confidence 134788999986421 2233344433 45677788887754 32333221 1 12 2223
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 463 FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 463 l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+..|....+..+.++|++++++|+..+ ....|+.+|+...
T Consensus 350 ~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 350 MSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 567777777779999999999987543 3456777776543
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.57 E-value=5.1e-07 Score=97.23 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=79.0
Q ss_pred Cccccccccch-HhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH
Q 004921 265 GVTFADVAGAD-QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (723)
Q Consensus 265 ~~~f~dv~G~~-~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~ 340 (723)
..+|+++...+ ..+..+.....|+.+. .. ....+|++|+||+|||||+|+.|+|+++ |.++.+++.++|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35777776443 2222333344444321 11 1235799999999999999999999987 78888888888876
Q ss_pred HHhhh-hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHH-HHHHHHHHh-hcCCCCCCceEEEEeeCCC
Q 004921 341 LFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDERE-QTINQLLTE-MDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 341 ~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~-~~ln~LL~~-ld~~~~~~~ViVIaaTN~p 417 (723)
.+... ....+.+.++..+ ...+|+|||+..-. .+++.. .++..++.. +. .+.-+|.|||.+
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~---------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ---------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc---------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 54321 1122344455443 35699999996642 122322 345555442 22 223577888864
No 223
>PRK06526 transposase; Provisional
Probab=98.54 E-value=3.3e-07 Score=96.20 Aligned_cols=100 Identities=24% Similarity=0.376 Sum_probs=64.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhh-hhhHHHHHHHHHHcCCCeEEEEcCccchhhhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r 377 (723)
+.+++|+||||||||+||.+++.++ |..+++++..++.+..... ....+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4689999999999999999998865 7788888888887654321 111223333332 3467999999987632
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 378 GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+......+.+++..... .. -+|.+||.+
T Consensus 174 -------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred -------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 22333455555544321 11 366777875
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=2.1e-06 Score=94.47 Aligned_cols=204 Identities=20% Similarity=0.215 Sum_probs=127.0
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhHHH---
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVE--- 340 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~~~--- 340 (723)
..+.|.+.-...+++++..- +....+.++.+.|-||||||.+..-+-... ....++++|..+.+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 34667777666666655541 123456789999999999999988665433 22447788764321
Q ss_pred -------HH----hhhh-hhHHHHHHHH-HHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCC
Q 004921 341 -------LF----VGVG-ASRVRDLFEK-AKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNS 406 (723)
Q Consensus 341 -------~~----~G~~-~~~vr~lF~~-A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~ 406 (723)
.+ .+.+ .......|.. .... .+-+|++||+|.|+.+.. .++..|.. +..+ .+.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFe-wp~l-p~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFE-WPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeehh-cccC-Ccc
Confidence 11 1111 1122233333 2223 378999999999985422 13333332 2222 356
Q ss_pred ceEEEEeeCCCCCCCccccC----CCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHhhCCCCCH--HHH
Q 004921 407 GVIVLAATNRPDVLDSALLR----PGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV--DFEKISRRTPGFTG--ADL 478 (723)
Q Consensus 407 ~ViVIaaTN~p~~LD~aLlr----pgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~--dl~~La~~t~G~sg--adL 478 (723)
.+++|+..|..+.=|..|-| .+--...+.|++++.++..+||+..+......... .++..|++..|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78999999988765544432 22234578999999999999999998766544333 35777888888776 445
Q ss_pred HHHHHHHHHHHHHhC
Q 004921 479 QNLMNEAAILAARRD 493 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~ 493 (723)
..+|+.|..++....
T Consensus 369 Ldv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777776665543
No 225
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.52 E-value=4.5e-07 Score=105.34 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=128.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHHHHHhhhhh--hHH--------HHHHHHHHcCCCeEEEEcCc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVGA--SRV--------RDLFEKAKSKAPCIVFIDEI 370 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~~~~~G~~~--~~v--------r~lF~~A~~~aP~ILfIDEi 370 (723)
.||||.|++||||++++++++.-+. .||+.+..+--.+..+|... ..+ ..++..|. ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58887765544444455321 111 12222222 259999999
Q ss_pred cchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCceEEEEeeCCC---CCCCccccCCCCccccccc
Q 004921 371 DAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRP---DVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 371 D~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~ViVIaaTN~p---~~LD~aLlrpgRfd~~I~v 436 (723)
..+- ..+++.|++.|+.-. -...+++|++-|.. ..|.++++. ||+.++.+
T Consensus 103 n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 7773 348888888886421 12357888874432 348899999 99999999
Q ss_pred CCCCHHHH-------HHHHH--HHhcCCCCCccccHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004921 437 DRPDVAGR-------VKILQ--VHSRGKALAKDVDFEKISRR--TPGF-TGADLQNLMNEAAILAARRDLKEISKDEISD 504 (723)
Q Consensus 437 ~~Pd~~~R-------~~Il~--~~l~~~~l~~d~dl~~La~~--t~G~-sgadL~~lv~~A~~~A~r~~~~~I~~edl~~ 504 (723)
+.|+..+. .+|.. ..+.+..++.. .+..++.. ..|. |.+--..+++-|..+|..+++..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 98876532 12332 22333333222 23333322 2355 7788888999999999999999999999999
Q ss_pred HHHHHHc
Q 004921 505 ALERIIA 511 (723)
Q Consensus 505 Al~~~~~ 511 (723)
|+.-++.
T Consensus 246 Aa~lvL~ 252 (584)
T PRK13406 246 AARLVLA 252 (584)
T ss_pred HHHHHHH
Confidence 9987764
No 226
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.51 E-value=8.8e-07 Score=90.05 Aligned_cols=165 Identities=24% Similarity=0.306 Sum_probs=88.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC---ceeeech-h-hH---HHHH-------------h-----------------
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV---PFFSCAA-S-EF---VELF-------------V----------------- 343 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~---p~i~is~-s-~~---~~~~-------------~----------------- 343 (723)
...++|+||+|+|||+|++.+.....- ..+++.. . .. ...+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 356999999999999999999998721 2222211 0 00 0000 1
Q ss_pred hhhhhHHHHHHHHHHcC-CCeEEEEcCccchh-hhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC--
Q 004921 344 GVGASRVRDLFEKAKSK-APCIVFIDEIDAVG-RQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV-- 419 (723)
Q Consensus 344 G~~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~-~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~-- 419 (723)
......+..+++..... ...||+|||++.+. ... .....+..|...++......++.+|.+......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 01233455666665543 24899999999996 211 223455566666665444445444444333211
Q ss_pred ----CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-CC-CccccHHHHHhhCCCCCHHHHH
Q 004921 420 ----LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-AL-AKDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 420 ----LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-~l-~~d~dl~~La~~t~G~sgadL~ 479 (723)
-...+. +|+.. +.+++.+.++..++++..++.. .+ .++.++..+...+.| .|+.|.
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 122233 37766 9999999999999999877655 11 245567777787776 666654
No 227
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.50 E-value=2.2e-07 Score=102.09 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=84.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCC-ceeeechhhHHHHHhh------hhhhHHHHHHHHHHcCCCeEEEEcCcc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGV-PFFSCAASEFVELFVG------VGASRVRDLFEKAKSKAPCIVFIDEID 371 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~-p~i~is~s~~~~~~~G------~~~~~vr~lF~~A~~~aP~ILfIDEiD 371 (723)
...|+|++||||+|+|||+|...+...+.. .-..+...+|...... ....-+..+-+.... .-.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457899999999999999999999887644 1122222233221100 011122222222222 23599999986
Q ss_pred chhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC-CCCCccccCCCCcccccccCCCCHHHHHHHHHH
Q 004921 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP-DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 372 ~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p-~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~ 450 (723)
.- +-....++..|+..+- ..|+++|+|+|++ +.|-+.=+.+.+|-. -.++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp-----------~I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFLP-----------FIDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHHH-----------HHHHHHh
Confidence 53 1223456777777764 4678999999974 444433333233321 1456777
Q ss_pred HhcCCCCCccccHHHH
Q 004921 451 HSRGKALAKDVDFEKI 466 (723)
Q Consensus 451 ~l~~~~l~~d~dl~~L 466 (723)
++.-..++.+.|+...
T Consensus 192 ~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRR 207 (362)
T ss_pred ceEEEEecCCCchhhh
Confidence 8777777777787654
No 228
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.50 E-value=8e-07 Score=101.06 Aligned_cols=205 Identities=21% Similarity=0.262 Sum_probs=120.4
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH--
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF-- 342 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~-- 342 (723)
..+++|......++.+.+..+.. .+..+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 34578877776666554444322 23469999999999999999998764 5799999987653321
Q ss_pred ---hhhhhh-------HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----C----
Q 004921 343 ---VGVGAS-------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----S---- 403 (723)
Q Consensus 343 ---~G~~~~-------~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~---- 403 (723)
.|.... .....|.. ...+.|||||||.+... ....|+..++.- .
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCCce
Confidence 121000 00011222 23568999999998432 334444444321 1
Q ss_pred CCCceEEEEeeCCCC-------CCCccccCCCCcccccccCCCCHHHH----HHHHHHHhcC----C-----CCCccccH
Q 004921 404 GNSGVIVLAATNRPD-------VLDSALLRPGRFDRQVTVDRPDVAGR----VKILQVHSRG----K-----ALAKDVDF 463 (723)
Q Consensus 404 ~~~~ViVIaaTN~p~-------~LD~aLlrpgRfd~~I~v~~Pd~~~R----~~Il~~~l~~----~-----~l~~d~dl 463 (723)
...++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..+++.+++. . .+ .+..+
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~-~~~a~ 341 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLL-DPEAL 341 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCc-CHHHH
Confidence 112567888887642 22333333 332 245555665544 3444444321 1 12 22336
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 464 EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 464 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
..|....+-.+.++|++++..++..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 77777777778999999999987654 34578888876554
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.49 E-value=1.7e-06 Score=99.15 Aligned_cols=211 Identities=14% Similarity=0.190 Sum_probs=114.5
Q ss_pred cccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec-
Q 004921 256 SKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA- 334 (723)
Q Consensus 256 ~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is- 334 (723)
...|.....+.+.+||+-...-.++++..+.... .+....+-+||+||||||||++++.+|+++|..+..-.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~n 78 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWIN 78 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecC
Confidence 3556667778899999988554444444443211 12233456889999999999999999999987665432
Q ss_pred hhhHH------HHHhhhh------hhH---HHHH-HHHHHc-----------CCCeEEEEcCccchhhhcCCCCCCCChH
Q 004921 335 ASEFV------ELFVGVG------ASR---VRDL-FEKAKS-----------KAPCIVFIDEIDAVGRQRGAGLGGGNDE 387 (723)
Q Consensus 335 ~s~~~------~~~~G~~------~~~---vr~l-F~~A~~-----------~aP~ILfIDEiD~l~~~r~~~~~~~~~~ 387 (723)
...+. ..+.+.. ... ..++ +..++. ..+.||+|||+-.++.. .
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~----------~ 148 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR----------D 148 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch----------h
Confidence 11110 0111100 011 1111 111111 24679999999766432 1
Q ss_pred HHHHHHHHHHhhcCCCCCC-ceEEEEe-eCC------C--------CCCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 004921 388 REQTINQLLTEMDGFSGNS-GVIVLAA-TNR------P--------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 451 (723)
Q Consensus 388 ~~~~ln~LL~~ld~~~~~~-~ViVIaa-TN~------p--------~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~ 451 (723)
.......|...+.. ... .+|+|.+ +.. . ..+++.++...++ .+|.|.+-...-..+.|+..
T Consensus 149 ~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 149 TSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 12222222233331 222 5666665 111 1 1355555553334 46778776665555555544
Q ss_pred hcCC--------CCCcccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 452 SRGK--------ALAKDVD-FEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 452 l~~~--------~l~~d~d-l~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
+... ......+ ++.|+..+.| ||+.+++...+.+.
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 3221 1222222 5677776655 99999998877776
No 230
>PRK15115 response regulator GlrR; Provisional
Probab=98.44 E-value=8.6e-07 Score=100.32 Aligned_cols=180 Identities=23% Similarity=0.317 Sum_probs=109.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhh-----hhh-------hHHHHHHHHHHcCCCeEEEE
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVG-----VGA-------SRVRDLFEKAKSKAPCIVFI 367 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G-----~~~-------~~vr~lF~~A~~~aP~ILfI 367 (723)
..++|+|++|||||++|+++.... +.||+.++|..+.+.... ... .....+|..+ ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 359999999999999999998764 579999999765432211 100 0001122222 2459999
Q ss_pred cCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----C----CCceEEEEeeCCCCCCCccccCCCCccc------
Q 004921 368 DEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----G----NSGVIVLAATNRPDVLDSALLRPGRFDR------ 432 (723)
Q Consensus 368 DEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~----~~~ViVIaaTN~p~~LD~aLlrpgRfd~------ 432 (723)
||||.+... .+..|+..++.-. . ..++.+|++|+.. ++..+ ..|+|..
T Consensus 235 ~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l 297 (444)
T PRK15115 235 DEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRL 297 (444)
T ss_pred EccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhh
Confidence 999998432 3344444443211 1 1257888888863 33333 2345522
Q ss_pred -ccccCCCCHHHHHH----HHHHHhcC------CCC--CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 004921 433 -QVTVDRPDVAGRVK----ILQVHSRG------KAL--AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (723)
Q Consensus 433 -~I~v~~Pd~~~R~~----Il~~~l~~------~~l--~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ 499 (723)
.+.+..|...+|.+ +++.+++. ... -.+.-+..|....+..+.++|+++++.|+..+ ....|+.
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~ 374 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISD 374 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccCh
Confidence 45666788888753 33333321 111 12334677888887779999999999987542 3456777
Q ss_pred HHHHHH
Q 004921 500 DEISDA 505 (723)
Q Consensus 500 edl~~A 505 (723)
+++...
T Consensus 375 ~~l~~~ 380 (444)
T PRK15115 375 ALVEQA 380 (444)
T ss_pred hhhhhh
Confidence 766543
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=9.4e-07 Score=95.99 Aligned_cols=132 Identities=22% Similarity=0.363 Sum_probs=90.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCC--------ceeeec-hh--------hHHHHH-------hh-----hhhhHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGV--------PFFSCA-AS--------EFVELF-------VG-----VGASRV 350 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~--------p~i~is-~s--------~~~~~~-------~G-----~~~~~v 350 (723)
+.|.++||+||+|+|||++|+.+|+.+.+ |.-.+. |. +|.... .| -+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 78899999999999999999999997632 111110 00 110000 01 134567
Q ss_pred HHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccC
Q 004921 351 RDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLR 426 (723)
Q Consensus 351 r~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlr 426 (723)
|++.+.+.. ....|++||++|.+.. ...|.|+..++... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 777776653 2346999999999843 36677777777553 346677789999999999988
Q ss_pred CCCcccccccCCCCHHHHHHHHHH
Q 004921 427 PGRFDRQVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 427 pgRfd~~I~v~~Pd~~~R~~Il~~ 450 (723)
|+ ..+.|++|+.++..+.|..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 55 6789999999887777653
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.5e-06 Score=91.58 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=51.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhh-hhhhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVG-VGASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G-~~~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
..+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...|... ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4579999999999999999997654 778888888877754322 1222344555543 245689999999775
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.42 E-value=2.1e-06 Score=93.35 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=50.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhh---hhhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV---GASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~---~~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
.+++|+||+|||||+||.|+|+++ |..+++++..++...+... ........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999986 7889999998887754321 1111122233333 3469999999765
No 234
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.2e-06 Score=94.78 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=92.9
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCc------eeee-chh--------hHHHHHh---h--hhhhHHHHHHHHHH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVP------FFSC-AAS--------EFVELFV---G--VGASRVRDLFEKAK 358 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p------~i~i-s~s--------~~~~~~~---G--~~~~~vr~lF~~A~ 358 (723)
.+.|.++||+||.|+||+.+|+++|+.+-+. .=.+ +|. |+..-.. | -+...+|++-+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 3678899999999999999999999865221 0000 010 1100000 1 12345566554443
Q ss_pred c----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccc
Q 004921 359 S----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (723)
Q Consensus 359 ~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I 434 (723)
. ..-.|++||++|.+. ....|.||+.++ ++..++++|..|+.++.|-|.+++ |+ ..+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred hCcccCCceEEEecchhhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 2 234699999999983 347899999999 456678999999999999999999 65 478
Q ss_pred ccCCCCHHHHHHHHHH
Q 004921 435 TVDRPDVAGRVKILQV 450 (723)
Q Consensus 435 ~v~~Pd~~~R~~Il~~ 450 (723)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999887777653
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.41 E-value=3.4e-07 Score=91.02 Aligned_cols=71 Identities=30% Similarity=0.466 Sum_probs=49.9
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhh-hhhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGV-GASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~-~~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
...|++|+||||||||+||.++++++ |.++.+++.+++.+..... ......+.++.... +.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 35689999999999999999999865 8899999999998764322 12223344555443 469999999643
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=2.4e-06 Score=89.67 Aligned_cols=70 Identities=29% Similarity=0.480 Sum_probs=50.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhh-hHHHH-HHHHHHcCCCeEEEEcCccch
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGA-SRVRD-LFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~-~~vr~-lF~~A~~~aP~ILfIDEiD~l 373 (723)
+.+++|+||||+|||+||-|+++++ |.++++++..+++......-. ..... +.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 5789999999999999999999876 889999999998875432211 11111 22212 23469999999765
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.41 E-value=6.8e-06 Score=85.08 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=115.8
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-C--Cceee-------
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-G--VPFFS------- 332 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-~--~p~i~------- 332 (723)
..+-+|+.+.+.++....|..+... . ..| ++|+|||+|+||-+.+.++-+++ | ++=..
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~----~-------d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST----G-------DFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc----C-------CCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 3445788888888887777665441 1 112 59999999999999999998876 2 21111
Q ss_pred -----------echhhHHHH---Hhhhh-hhHHHHHHHHHHcCCC---------eEEEEcCccchhhhcCCCCCCCChHH
Q 004921 333 -----------CAASEFVEL---FVGVG-ASRVRDLFEKAKSKAP---------CIVFIDEIDAVGRQRGAGLGGGNDER 388 (723)
Q Consensus 333 -----------is~s~~~~~---~~G~~-~~~vr~lF~~A~~~aP---------~ILfIDEiD~l~~~r~~~~~~~~~~~ 388 (723)
++....++. -.|.. .--+.++.++..+..| .+++|.|+|.+..
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------------- 141 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------------- 141 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-------------
Confidence 111111110 01211 1234555555443322 5999999999854
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHH
Q 004921 389 EQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKIS 467 (723)
Q Consensus 389 ~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La 467 (723)
..+..|-..|+.+..+. -+|..+|....+-+++++ |. ..|.+|.|+.++...++...+++..+.-. .-+..++
T Consensus 142 -dAQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa 215 (351)
T KOG2035|consen 142 -DAQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIA 215 (351)
T ss_pred -HHHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 24556777788776654 566677888888899998 43 45899999999999999988877665432 2346666
Q ss_pred hhCCC
Q 004921 468 RRTPG 472 (723)
Q Consensus 468 ~~t~G 472 (723)
+...|
T Consensus 216 ~kS~~ 220 (351)
T KOG2035|consen 216 EKSNR 220 (351)
T ss_pred HHhcc
Confidence 66655
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.40 E-value=6.7e-07 Score=84.94 Aligned_cols=105 Identities=29% Similarity=0.461 Sum_probs=65.6
Q ss_pred cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhHHHHHhhhhhhH
Q 004921 273 GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVELFVGVGASR 349 (723)
Q Consensus 273 G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~~~~~~G~~~~~ 349 (723)
|.....+++++-+..+.. ....|||+|++||||+++|+++....+ .+|+.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------
T ss_pred CCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------
Confidence 455555566655554332 235699999999999999999988764 478887776533
Q ss_pred HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
.++++.+ ....|||+|+|.+.. . .+..|+..++... ..++-+|+++..
T Consensus 62 -~~~l~~a---~~gtL~l~~i~~L~~-----------~---~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 -AELLEQA---KGGTLYLKNIDRLSP-----------E---AQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp -HHHHHHC---TTSEEEEECGCCS-H-----------H---HHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred -HHHHHHc---CCCEEEECChHHCCH-----------H---HHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 3455555 456999999999943 2 3334444444322 344566666654
No 239
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.8e-06 Score=102.85 Aligned_cols=129 Identities=27% Similarity=0.325 Sum_probs=91.9
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-----
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL----- 341 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~----- 341 (723)
.|+|++++...+.+.+..-+..-. +. .++-.+||.||.|+|||-||+++|... .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 478999988888877765332110 00 345679999999999999999999976 457899999987762
Q ss_pred ----HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC---------CCce
Q 004921 342 ----FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG---------NSGV 408 (723)
Q Consensus 342 ----~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~---------~~~V 408 (723)
|+|. .....+.+..++..-+||+|||||.-.+ .++|.|++.+|...- -.++
T Consensus 639 sp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh~--------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 639 SPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAHP--------------DVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCcccccc--hhHHHHHHHHhcCCceEEEEechhhcCH--------------HHHHHHHHHHhcCccccCCCcEeeccce
Confidence 2222 2344666677777779999999988632 377777777775432 2358
Q ss_pred EEEEeeCCCC
Q 004921 409 IVLAATNRPD 418 (723)
Q Consensus 409 iVIaaTN~p~ 418 (723)
|||.|+|.-.
T Consensus 703 I~IMTsn~~~ 712 (898)
T KOG1051|consen 703 IFIMTSNVGS 712 (898)
T ss_pred EEEEecccch
Confidence 9999998643
No 240
>PRK06921 hypothetical protein; Provisional
Probab=98.39 E-value=3.3e-06 Score=89.29 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=47.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
..+++|+||||+|||+|+.++|+++ +..+++++..++....... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999975 6788888887766543221 11222233333 3457999999943
No 241
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.6e-06 Score=81.27 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=48.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
+.++|+||+|+|||++++.++++.. -.++++++.+.......... +.+.|.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998876 77888887765542211111 223333332235689999999887
No 242
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.36 E-value=1.6e-06 Score=97.85 Aligned_cols=181 Identities=24% Similarity=0.306 Sum_probs=108.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh-----hhhhh-------HHHHHHHHHHcCCCeEEE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV-----GVGAS-------RVRDLFEKAKSKAPCIVF 366 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~-----G~~~~-------~vr~lF~~A~~~aP~ILf 366 (723)
...++++|.+||||+++|+++.... +.||+.++|..+.+... |.... ....+|.. ...++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE---ADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeE---CCCCEEE
Confidence 3569999999999999999997654 57999999976543221 11000 00011222 2357999
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----C----CCceEEEEeeCCCCCCCccccCCCCccc-----
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----G----NSGVIVLAATNRPDVLDSALLRPGRFDR----- 432 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----~----~~~ViVIaaTN~p~~LD~aLlrpgRfd~----- 432 (723)
|||||.+... .+..|+..++.-. . ..++.+|++|+.+- .....+|+|..
T Consensus 239 ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 239 LDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYR 301 (441)
T ss_pred EeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHH
Confidence 9999999542 3345555544221 1 12467888887632 12334455543
Q ss_pred --ccccCCCCHHHHHH----HHHHHhcC------CCC--CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 004921 433 --QVTVDRPDVAGRVK----ILQVHSRG------KAL--AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498 (723)
Q Consensus 433 --~I~v~~Pd~~~R~~----Il~~~l~~------~~l--~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~ 498 (723)
.+.+..|...+|.+ +++.++.. ... -.+..+..|....+..+.++|.++++.++.. .....|+
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~ 378 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYIS 378 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccc
Confidence 45667788877744 33333321 110 1223457777777777999999999988654 2345677
Q ss_pred HHHHHHH
Q 004921 499 KDEISDA 505 (723)
Q Consensus 499 ~edl~~A 505 (723)
.+++...
T Consensus 379 ~~~l~~~ 385 (441)
T PRK10365 379 ERELPLA 385 (441)
T ss_pred hHhCchh
Confidence 7776543
No 243
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=2.6e-05 Score=87.40 Aligned_cols=213 Identities=15% Similarity=0.239 Sum_probs=109.5
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHHhcCchhh-hhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKY-TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~-~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
..|..+..+-+.+|++-+ |+.+.++-.||+.-..+ .+++ .+-+||+||+|||||+.++.+++++|+.++.-+.
T Consensus 70 elW~eKy~P~t~eeLAVH---kkKI~eVk~WL~~~~~~~~~l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVH---KKKISEVKQWLKQVAEFTPKLG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred chhHHhcCcccHHHHhhh---HHhHHHHHHHHHHHHHhccCCC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 345555666788888765 44444444444411110 0111 2358999999999999999999999887665431
Q ss_pred -------------hhHHHHHhhhhhhHHHHHHHHHH------------cCCCeEEEEcCccchhhhcCCCCCCCChHHHH
Q 004921 336 -------------SEFVELFVGVGASRVRDLFEKAK------------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQ 390 (723)
Q Consensus 336 -------------s~~~~~~~G~~~~~vr~lF~~A~------------~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~ 390 (723)
+.+..................+. ..++.+|+|||+-..+.. + ...
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~---------d-~~~ 213 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR---------D-DSE 213 (634)
T ss_pred CccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh---------h-hHH
Confidence 11111111111112222222221 244679999999766432 1 223
Q ss_pred HHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccC------CCCcccccccCCCCHHHHHHHHHHHhcCC-------CC
Q 004921 391 TINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLR------PGRFDRQVTVDRPDVAGRVKILQVHSRGK-------AL 457 (723)
Q Consensus 391 ~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlr------pgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-------~l 457 (723)
.+...|.+.-......-|++|.-++.++..++..+. ..|+ .+|.|.+-...-.++.|+..++.. .+
T Consensus 214 ~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 214 TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 333344433322223323333333333443333322 1234 356776666665666666554321 12
Q ss_pred CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 458 AKDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 458 ~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
.....++.++... ++||+.+++...+.+.
T Consensus 293 ~~~~~v~~i~~~s----~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 293 PDTAEVELICQGS----GGDIRSAINSLQLSSS 321 (634)
T ss_pred chhHHHHHHHHhc----CccHHHHHhHhhhhcc
Confidence 2233344555544 4599999998877753
No 244
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.22 E-value=7.9e-06 Score=88.47 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=92.4
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCce--eeechhhHHHHH--------hhhhh-----------hHHHHHHHHH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--FSCAASEFVELF--------VGVGA-----------SRVRDLFEKA 357 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~--i~is~s~~~~~~--------~G~~~-----------~~vr~lF~~A 357 (723)
..+|+|++|||.-|||||+|...+-..+.... -.+...+|.... ...+. .-+.-+-++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45699999999999999999998876542100 011122222110 00000 0000111111
Q ss_pred HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC-CCCCCccccCCCCccccccc
Q 004921 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR-PDVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlrpgRfd~~I~v 436 (723)
. ...++|++||+..- +-...-+++.|...+- ++||+++||+|+ |+.|-..=+.+.-|...
T Consensus 191 a-~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR~~F~Pf--- 251 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQRENFIPF--- 251 (467)
T ss_pred h-hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhhhhhhhH---
Confidence 1 12379999998653 1223346677777665 458999999998 45555544442223222
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCC-C--CCH-HHHHHHHHHHH
Q 004921 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTP-G--FTG-ADLQNLMNEAA 486 (723)
Q Consensus 437 ~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~-G--~sg-adL~~lv~~A~ 486 (723)
..+|+.+++-..+...+|+...+.... + |.+ .|...++++-.
T Consensus 252 --------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 252 --------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred --------HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 467888888888888899984433222 1 233 37777777654
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=7.1e-06 Score=78.38 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=63.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh----------------------hh--hhhHHHHHHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV----------------------GV--GASRVRDLFEKA 357 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~----------------------G~--~~~~vr~lF~~A 357 (723)
++|+||||+|||+++..++... +.++++++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776543322110 00 001112234555
Q ss_pred HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
....|.+|+|||+..+.........+........+..|+..+. ..++.+|.+++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6678899999999998654211001112233344444444443 345566666665543
No 246
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=3.4e-06 Score=78.49 Aligned_cols=98 Identities=18% Similarity=0.301 Sum_probs=57.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc--------CCceeeechhhHH------HHH---hh------hhhhH-HHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAASEFV------ELF---VG------VGASR-VRDLFEKA 357 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~--------~~p~i~is~s~~~------~~~---~G------~~~~~-vr~lF~~A 357 (723)
.+.++++||||+|||++++.++... ..+++.+++.... ... .+ ..... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999977 7788888775432 111 11 01222 23333334
Q ss_pred HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
......+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444699999999983 1 346666666556 222234444443
No 247
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=3.2e-06 Score=90.55 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=93.9
Q ss_pred chHhHHHHHHHHHHhcCchh----hhhhC---CCCCcceEEeCCCCCcHHHHHHHHHHhcCCce-eeechhhHHHH----
Q 004921 274 ADQAKLELQEVVDFLKNPDK----YTALG---AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF-FSCAASEFVEL---- 341 (723)
Q Consensus 274 ~~~~k~~L~eiv~~l~~~~~----~~~~g---~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~-i~is~s~~~~~---- 341 (723)
+..+.+.|.++.+.+..+.. +..+. ..+|+|+.|||+-|.|||+|...+-..+..+- ..+....|...
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 44455566666654322211 11122 34789999999999999999999988775432 33333333321
Q ss_pred ---HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC-C
Q 004921 342 ---FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR-P 417 (723)
Q Consensus 342 ---~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~-p 417 (723)
..|+.. -+..+-.... ..-.||+|||+..- +-....++..|+++|- ..||++++|+|. |
T Consensus 110 l~~l~g~~d-pl~~iA~~~~-~~~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P 172 (367)
T COG1485 110 LHTLQGQTD-PLPPIADELA-AETRVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAP 172 (367)
T ss_pred HHHHcCCCC-ccHHHHHHHH-hcCCEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCCh
Confidence 122221 1111111111 11249999998642 2223457788888776 458999999997 4
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHH
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFE 464 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~ 464 (723)
+.|-+.=+.+.||-.. .++++.++.-+.++...|+.
T Consensus 173 ~~LY~dGlqR~~FLP~-----------I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 173 DNLYKDGLQRERFLPA-----------IDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred HHhcccchhHHhhHHH-----------HHHHHHheEEEEecCCcccc
Confidence 5555544444455322 45688888777777666654
No 248
>PF05729 NACHT: NACHT domain
Probab=98.07 E-value=2.9e-05 Score=74.62 Aligned_cols=140 Identities=17% Similarity=0.258 Sum_probs=72.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc------C--Cc-eeeechhhHHH---------HH---hhhhhhHHHH-HHHHHHcCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA------G--VP-FFSCAASEFVE---------LF---VGVGASRVRD-LFEKAKSKA 361 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~------~--~p-~i~is~s~~~~---------~~---~G~~~~~vr~-lF~~A~~~a 361 (723)
-++|+|+||+|||++++.++..+ . .+ ++.+++.+... .. .......+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47999999999999999998754 1 11 22333332221 00 1111111222 222334456
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC--CCCccccCCCCcccccccCCC
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRP 439 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~~P 439 (723)
+.+|+||.+|.+...... .........|...+.. ....++-++.+++... .+...+.. ...+.++..
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 789999999999653211 1112222222233332 1122333333333211 22222222 156888888
Q ss_pred CHHHHHHHHHHHhcC
Q 004921 440 DVAGRVKILQVHSRG 454 (723)
Q Consensus 440 d~~~R~~Il~~~l~~ 454 (723)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 249
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00011 Score=75.76 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=113.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC---Cceeeech-----hhHHHHHhhhh------------hhHHHHHHHHHHc-CCCe
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAG---VPFFSCAA-----SEFVELFVGVG------------ASRVRDLFEKAKS-KAPC 363 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~---~p~i~is~-----s~~~~~~~G~~------------~~~vr~lF~~A~~-~aP~ 363 (723)
+.++|+.|+|||+++|++....+ +..++++. +.+.+.++.+. +..-+.+.+..++ ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 68999999999999997766553 22233332 33333333222 1222333333333 4568
Q ss_pred EEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCC------CCcccccccC
Q 004921 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRP------GRFDRQVTVD 437 (723)
Q Consensus 364 ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrp------gRfd~~I~v~ 437 (723)
++++||.+.+... ....+.-|.+.-++....-.++.++-. .|.+.++.+ -|++-.|.++
T Consensus 134 ~l~vdEah~L~~~-----------~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLNDS-----------ALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhChh-----------HHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEecC
Confidence 9999999988432 122333333322222333345555532 233333221 1777778889
Q ss_pred CCCHHHHHHHHHHHhcCCCC----CccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 438 RPDVAGRVKILQVHSRGKAL----AKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 438 ~Pd~~~R~~Il~~~l~~~~l----~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
+.+.++-..+++.++++-.. ..+..+..+...+.| .|+.|.+++..|...|...+...|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99999888999988865433 334446777777887 799999999999988888888888766553
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.03 E-value=2.1e-05 Score=79.82 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH-HHHhhh----------------------hhhHHH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-ELFVGV----------------------GASRVR 351 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~-~~~~G~----------------------~~~~vr 351 (723)
|.....-++|+||||+|||+++..++.+. +.+.++++..++. +.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 44445568999999999999999887643 6677887775421 111110 011133
Q ss_pred HHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 352 DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 352 ~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.+.+.+....|++|+||-+..+....... ......+.+..++..|..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444555578999999999986432110 11122233334444444443455666666644
No 251
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.03 E-value=4.2e-05 Score=81.75 Aligned_cols=208 Identities=22% Similarity=0.274 Sum_probs=122.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
...|+.+++.....+.+.+-...+ . -....+||.|..||||-++||+.-... ..||+.+||..+-+.
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~------A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~ 269 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL------A----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED 269 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh------h----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh
Confidence 346888887765544433222111 1 112348999999999999999986543 689999999765432
Q ss_pred -----Hhhhh--hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC-C----CC----C
Q 004921 342 -----FVGVG--ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-F----SG----N 405 (723)
Q Consensus 342 -----~~G~~--~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~-~----~~----~ 405 (723)
..|.. ...-..+|+.|... -+|+|||..+.+ . ....||..+.. - .. .
T Consensus 270 ~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-----------~---lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 270 AAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-----------R---LQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred HhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-----------H---HHHHHHHHhcCCceeecCCcceEE
Confidence 22322 24455788888765 899999987743 2 44455555432 1 11 1
Q ss_pred CceEEEEeeCCCCC--CCccccCCCCcc--cccccCCCCHHHHHH--------HHHHHhcCCCCC-ccc---cHHHHHhh
Q 004921 406 SGVIVLAATNRPDV--LDSALLRPGRFD--RQVTVDRPDVAGRVK--------ILQVHSRGKALA-KDV---DFEKISRR 469 (723)
Q Consensus 406 ~~ViVIaaTN~p~~--LD~aLlrpgRfd--~~I~v~~Pd~~~R~~--------Il~~~l~~~~l~-~d~---dl~~La~~ 469 (723)
-+|-||+||..+-. .+.--.|..-|. .++.+..|...+|.. .++.+....... +.. -+..+.+.
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 24889999987521 121111111111 256777788777743 222333332221 111 25667777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 470 TPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 470 t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
-|-.+.+++.|++-+|+... ....++.+++
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i 442 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLL---EGYELRIEDI 442 (511)
T ss_pred CCCccHHHHHHHHHHHHHHh---ccCccchhhc
Confidence 77779999999999887543 2334454444
No 252
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.00 E-value=3.8e-05 Score=79.48 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=73.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGL 381 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~ 381 (723)
..|-.++||+|||||..+|.+|+.+|.+++.++|++-.+ ...+..+|.-+... .+-+++||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~------ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE------ 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH------
Confidence 356789999999999999999999999999999987544 24456666655443 47999999999832
Q ss_pred CCCChHHHHHHHHHHHhh----cCCC-----------CCCceEEEEeeCC----CCCCCccccCCCCcccccccCCCCHH
Q 004921 382 GGGNDEREQTINQLLTEM----DGFS-----------GNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVA 442 (723)
Q Consensus 382 ~~~~~~~~~~ln~LL~~l----d~~~-----------~~~~ViVIaaTN~----p~~LD~aLlrpgRfd~~I~v~~Pd~~ 442 (723)
+.-.++.+.+..+ ..-. -+...-+..|.|. -..|++.|+. +-|.+.+..||..
T Consensus 99 -----~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~ 170 (231)
T PF12774_consen 99 -----EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLS 170 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HH
T ss_pred -----HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHH
Confidence 2222333333322 1110 0112334445553 2368888876 4488999999987
Q ss_pred HHHHHH
Q 004921 443 GRVKIL 448 (723)
Q Consensus 443 ~R~~Il 448 (723)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 253
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.99 E-value=1e-05 Score=92.45 Aligned_cols=181 Identities=26% Similarity=0.353 Sum_probs=110.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh--cCCceeeechhhHHHH-----Hhhhhh--------hHHHHHHHHHHcCCCeEEEEc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE--AGVPFFSCAASEFVEL-----FVGVGA--------SRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e--~~~p~i~is~s~~~~~-----~~G~~~--------~~vr~lF~~A~~~aP~ILfID 368 (723)
.+|+.|.|||||-.+++++-.. ...||+.++|.-+-+. +.|... +-.+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 5999999999999999999654 4679999999654332 222221 222333444433 389999
Q ss_pred CccchhhhcCCCCCCCChHHHHHHHHHHHhhc--------CCCCCCceEEEEeeCCCCCCCccccCCCCccc-------c
Q 004921 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--------GFSGNSGVIVLAATNRPDVLDSALLRPGRFDR-------Q 433 (723)
Q Consensus 369 EiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld--------~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~ 433 (723)
||..+.- ..+..||..+. +-...-.|-||+||+++=. .|.+.|||.. .
T Consensus 415 eIgd~p~--------------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 415 EIGDMPL--------------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNA 477 (606)
T ss_pred HhhhchH--------------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcC
Confidence 9987732 24445555443 2222235789999998532 5667788765 3
Q ss_pred cccCCCCHHHHHH---HHHHHhcCC-----CCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 434 VTVDRPDVAGRVK---ILQVHSRGK-----ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 434 I~v~~Pd~~~R~~---Il~~~l~~~-----~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+.+|...+|.+ +|..+++.. .++++ -+..|...-+-.+.+++.+++..++..+ +...+...|+...
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~-~~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~ 553 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDD-ALARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPE 553 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHH-HHHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHH
Confidence 4566788777643 333333221 22222 2344545555559999999999876543 4445666666555
Q ss_pred HHH
Q 004921 506 LER 508 (723)
Q Consensus 506 l~~ 508 (723)
+..
T Consensus 554 l~~ 556 (606)
T COG3284 554 LLE 556 (606)
T ss_pred HHh
Confidence 543
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.94 E-value=3.3e-06 Score=92.14 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=107.6
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhh--hCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh-----HHH--
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTA--LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE-----FVE-- 340 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~--~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~-----~~~-- 340 (723)
+|.|.+.+|..+- +..+....+... ...+-.-++||.|.||||||.|.+.++.-+...+ ++++.. +..
T Consensus 25 ~i~g~~~iK~ail--l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAIL--LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHC--CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHH--HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 5788888886542 111111111000 1123344799999999999999998876543332 222211 100
Q ss_pred -HHhhhhhhHHH-HHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC----C-------CCc
Q 004921 341 -LFVGVGASRVR-DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----G-------NSG 407 (723)
Q Consensus 341 -~~~G~~~~~vr-~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----~-------~~~ 407 (723)
+-...++..+. ..+-.|. ..|++|||+|.+-. .....|++.|+.-. . +..
T Consensus 102 ~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCT---TSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred ccccccceeEEeCCchhccc---Cceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcccccch
Confidence 00000000000 1222332 35999999999832 13555666665421 1 234
Q ss_pred eEEEEeeCCCC-------------CCCccccCCCCccccccc-CCCCHHHHHHHHHHHhc----CC------------CC
Q 004921 408 VIVLAATNRPD-------------VLDSALLRPGRFDRQVTV-DRPDVAGRVKILQVHSR----GK------------AL 457 (723)
Q Consensus 408 ViVIaaTN~p~-------------~LD~aLlrpgRfd~~I~v-~~Pd~~~R~~Il~~~l~----~~------------~l 457 (723)
.-|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.++ .. .+
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPI 242 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCcc
Confidence 67899999754 37889999 99988765 56665544444443222 11 11
Q ss_pred Cccc--cHHHHHh------------------------------hCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004921 458 AKDV--DFEKISR------------------------------RTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 505 (723)
Q Consensus 458 ~~d~--dl~~La~------------------------------~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~A 505 (723)
+.+. .+-..++ .....|.+.|+.+++-|...|..+-+..|+.+|+..|
T Consensus 243 ~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~A 322 (331)
T PF00493_consen 243 SEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEA 322 (331)
T ss_dssp -HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHH
Confidence 1110 0111111 1123566778888888888888888888999999988
Q ss_pred HHH
Q 004921 506 LER 508 (723)
Q Consensus 506 l~~ 508 (723)
+.-
T Consensus 323 i~L 325 (331)
T PF00493_consen 323 IRL 325 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 255
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.93 E-value=3.2e-05 Score=90.51 Aligned_cols=153 Identities=27% Similarity=0.313 Sum_probs=86.7
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhC--CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee-chhhHHHHHhh
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALG--AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC-AASEFVELFVG 344 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g--~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i-s~s~~~~~~~G 344 (723)
.-.|-|++.+|+.|. +..+....+...-| .+-.-++||.|-||||||-|.+.+++-+-.-++.. .++. -+|
T Consensus 285 aPsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 345788888887653 22233222211111 22334799999999999999999998775444332 1111 122
Q ss_pred hhhhHHHHHH-----HHHH---cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC----C-------C
Q 004921 345 VGASRVRDLF-----EKAK---SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----G-------N 405 (723)
Q Consensus 345 ~~~~~vr~lF-----~~A~---~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----~-------~ 405 (723)
-++..+++-+ -.|- -..+.|.+|||+|.+-. ...+.+...|+... . +
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~--------------~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE--------------EDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh--------------HHHHHHHHHHHhcEeeecccceeeecc
Confidence 2222222222 1111 13357999999998832 13344445554321 1 1
Q ss_pred CceEEEEeeCCCC-------------CCCccccCCCCcccccccC-CCCHH
Q 004921 406 SGVIVLAATNRPD-------------VLDSALLRPGRFDRQVTVD-RPDVA 442 (723)
Q Consensus 406 ~~ViVIaaTN~p~-------------~LD~aLlrpgRfd~~I~v~-~Pd~~ 442 (723)
...-|+||+|... .|++.|++ |||..+.+. .|+.+
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~ 473 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEE 473 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCcc
Confidence 2345788888653 37889999 999876554 45554
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=4.1e-05 Score=81.48 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH--------HH-hh----hhhhHHHHHHHHHHc----CC
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--------LF-VG----VGASRVRDLFEKAKS----KA 361 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~--------~~-~G----~~~~~vr~lF~~A~~----~a 361 (723)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+.. .. .+ -+...+|++-+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 367889999999999999999999997643210011111100 00 11 123455666555443 23
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCC
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~P 439 (723)
..|++||++|.+. ....|.||+.++ ++..++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt--------------~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT--------------LDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3699999999984 347899999998 456678888899999999999998 55 34556543
No 257
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.88 E-value=2.1e-05 Score=83.52 Aligned_cols=133 Identities=23% Similarity=0.354 Sum_probs=71.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC-c--eeeechhhHHHHHhhhhhhHHHHHHHHH-----------HcCCCeEEEEc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV-P--FFSCAASEFVELFVGVGASRVRDLFEKA-----------KSKAPCIVFID 368 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~-p--~i~is~s~~~~~~~G~~~~~vr~lF~~A-----------~~~aP~ILfID 368 (723)
+.+||+||+|||||++++.+-.+..- . ...++++.... ...+..+.+.. .....+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 57999999999999999988766532 2 22233332111 11121111111 11334799999
Q ss_pred CccchhhhcCCCCCCCChHHHHHHHHHHHhh-c--CCCC--------CCceEEEEeeCCCC---CCCccccCCCCccccc
Q 004921 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEM-D--GFSG--------NSGVIVLAATNRPD---VLDSALLRPGRFDRQV 434 (723)
Q Consensus 369 EiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l-d--~~~~--------~~~ViVIaaTN~p~---~LD~aLlrpgRfd~~I 434 (723)
|+..-.... +..+...+||+++ | |+-. -.++.+|++.+.+. .+++.++| .| ..+
T Consensus 108 DlN~p~~d~---------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~ 175 (272)
T PF12775_consen 108 DLNMPQPDK---------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NIL 175 (272)
T ss_dssp TTT-S---T---------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEE
T ss_pred ccCCCCCCC---------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEE
Confidence 997653321 2222333455443 2 1111 13577888888643 37788887 56 588
Q ss_pred ccCCCCHHHHHHHHHHHhc
Q 004921 435 TVDRPDVAGRVKILQVHSR 453 (723)
Q Consensus 435 ~v~~Pd~~~R~~Il~~~l~ 453 (723)
.++.|+.+....|+...+.
T Consensus 176 ~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp E----TCCHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHh
Confidence 9999999988887776553
No 258
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=0.00019 Score=90.74 Aligned_cols=173 Identities=18% Similarity=0.275 Sum_probs=97.7
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce---eeech-----h-
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF---FSCAA-----S- 336 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~---i~is~-----s- 336 (723)
..+++++|.+...++|..++.. .....+-+-|+||+|+|||+||+++++....+| +.++. .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 4688999999888887766642 112245688999999999999999988764332 11110 0
Q ss_pred -h--------------HHHHHhhh----h---hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHH
Q 004921 337 -E--------------FVELFVGV----G---ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQ 394 (723)
Q Consensus 337 -~--------------~~~~~~G~----~---~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~ 394 (723)
. +....... . ...+ ....+....++.+|++|++|.. ..+..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l~~ 313 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVLDA 313 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHHHH
Confidence 0 00000000 0 0000 1122223356789999998653 12333
Q ss_pred HHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccH----HHHHhhC
Q 004921 395 LLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF----EKISRRT 470 (723)
Q Consensus 395 LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl----~~La~~t 470 (723)
+....+.+. .+-.||.||+..+ +++....++.+.++.|+.++..+++..++-+....+ .++ .++++.+
T Consensus 314 L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c 385 (1153)
T PLN03210 314 LAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRA 385 (1153)
T ss_pred HHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHh
Confidence 333333222 2335566666543 333234678899999999999999988874433222 122 3455566
Q ss_pred CCC
Q 004921 471 PGF 473 (723)
Q Consensus 471 ~G~ 473 (723)
.|.
T Consensus 386 ~GL 388 (1153)
T PLN03210 386 GNL 388 (1153)
T ss_pred CCC
Confidence 553
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.85 E-value=0.00028 Score=74.78 Aligned_cols=174 Identities=20% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh--cCCce---eeechh------hHHHHH---hh
Q 004921 279 LELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE--AGVPF---FSCAAS------EFVELF---VG 344 (723)
Q Consensus 279 ~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e--~~~p~---i~is~s------~~~~~~---~G 344 (723)
.+++++.+.|.... ...+-+.|+|++|+|||+||+.+++. ....| +.++.+ ++.... .+
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 35666666655421 23456999999999999999999987 33222 222221 111111 11
Q ss_pred hh---------hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 345 VG---------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 345 ~~---------~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.. .......+.......+++|+||+++... .+..+...+.... .+.-||.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCHH--SS-EEEEEES
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc----------------ccccccccccccc--cccccccccc
Confidence 11 1223333444444559999999987652 2222222222222 2345666776
Q ss_pred CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC----CCccccHHHHHhhCCCCCHHHHHHHH
Q 004921 416 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA----LAKDVDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 416 ~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~----l~~d~dl~~La~~t~G~sgadL~~lv 482 (723)
...... ... .-+..+.++..+.++-.++|..+..... ...+.....+++.+.| .|-.|.-+.
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 543211 111 1146789999999999999998875433 1112235788888876 666665553
No 260
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00046 Score=73.71 Aligned_cols=154 Identities=15% Similarity=0.221 Sum_probs=95.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCc-------eeee-chhhHHH-H-----Hh---h--hhhhHHHHHHHHHHc-
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-------FFSC-AASEFVE-L-----FV---G--VGASRVRDLFEKAKS- 359 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p-------~i~i-s~s~~~~-~-----~~---G--~~~~~vr~lF~~A~~- 359 (723)
++|.++||+|| +||+.+|+++|..+-+. .-.+ +|..+.. . ++ | -....+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 66889999996 68999999999865321 1111 1111110 0 00 1 123566776665543
Q ss_pred ---CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccccc
Q 004921 360 ---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 360 ---~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v 436 (723)
....|++||++|.+. ....|.||+.++. +..++++|..|+.++.|-|.+++ |+ ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 233699999999984 3478999999984 55567888889999999999999 65 56777
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHH
Q 004921 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 437 ~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv 482 (723)
+. +.+...+++. ...+.. +...++....| ++.....+.
T Consensus 161 ~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 161 PK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred CC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 55 5555455554 222222 12333334444 566555554
No 261
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.84 E-value=8.3e-05 Score=84.55 Aligned_cols=221 Identities=20% Similarity=0.263 Sum_probs=117.5
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCC--CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGA--KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~--~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
-|-.|-|++.+|..+. +..+....++..-|. +-.-+|+|.|.|||||+-+.++.++-+-..++..--..- -.|
T Consensus 343 l~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSS---aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASS---AAG 417 (764)
T ss_pred hCccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccc---ccc
Confidence 3667889999997663 233333333333233 334479999999999999999999866544433211000 011
Q ss_pred hhhhHHHH--HHH---HHH---cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CC
Q 004921 345 VGASRVRD--LFE---KAK---SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GN 405 (723)
Q Consensus 345 ~~~~~vr~--lF~---~A~---~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~ 405 (723)
-+..-+++ -++ +|- -....|-+|||+|.+..+ -...+++.|+.-. -+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEeec
Confidence 11111110 000 010 022358899999998432 1223444454321 11
Q ss_pred CceEEEEeeCCCC-------------CCCccccCCCCccccc-ccCCCCHHHHHHHHHHHhcCCC-C-------------
Q 004921 406 SGVIVLAATNRPD-------------VLDSALLRPGRFDRQV-TVDRPDVAGRVKILQVHSRGKA-L------------- 457 (723)
Q Consensus 406 ~~ViVIaaTN~p~-------------~LD~aLlrpgRfd~~I-~v~~Pd~~~R~~Il~~~l~~~~-l------------- 457 (723)
.+--||||+|... .+++++++ |||..+ -++-|++..=..|-++.+.... +
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2235788888643 37889999 999754 5566766543333332221100 0
Q ss_pred ------------Ccccc----------HHHH--------HhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004921 458 ------------AKDVD----------FEKI--------SRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 458 ------------~~d~d----------l~~L--------a~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~ 507 (723)
.+.+. +..| .+.+++.|.++|+.+++-+-.+|.-+-.+.++.+|+.+|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 00000 0011 11133566777777777766666666666777777777765
Q ss_pred H
Q 004921 508 R 508 (723)
Q Consensus 508 ~ 508 (723)
-
T Consensus 642 L 642 (764)
T KOG0480|consen 642 L 642 (764)
T ss_pred H
Confidence 4
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.81 E-value=0.00015 Score=71.74 Aligned_cols=103 Identities=24% Similarity=0.265 Sum_probs=58.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH----HH--hhhh-----------------------h-----
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LF--VGVG-----------------------A----- 347 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----~~--~G~~-----------------------~----- 347 (723)
+|++||||||||+++..++.+. |.++++++..+-.+ .. .|.. .
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 66777776532221 10 0100 0
Q ss_pred hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 348 SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 348 ~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
.....+...+....|.+|+||++..+... ........+..++..+.. .++.+|.+++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 01233444445567999999999887542 112223344445555442 2445555555443
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.79 E-value=0.00012 Score=83.08 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh------hh--------hhhHHHHHHHHHHcC
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV--------GASRVRDLFEKAKSK 360 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~------G~--------~~~~vr~lF~~A~~~ 360 (723)
|+....-++|+||||+|||+|+..++... +.++++++..+..+... |. .+..+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 44445568999999999999999998754 67888888765443221 11 113355677777777
Q ss_pred CCeEEEEcCccchhhh
Q 004921 361 APCIVFIDEIDAVGRQ 376 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~ 376 (723)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988653
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.79 E-value=5.9e-05 Score=68.55 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~ 327 (723)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00023 Score=74.47 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=80.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCc-----eeee-chhhHHHH------H--h---hhhhhHHHHHHHHHHc---
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-----FFSC-AASEFVEL------F--V---GVGASRVRDLFEKAKS--- 359 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p-----~i~i-s~s~~~~~------~--~---G~~~~~vr~lF~~A~~--- 359 (723)
.+|..+||+||+|+||..+|.++|..+-+. .-.+ +|..+... + . .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 357889999999999999999999865221 1111 11111100 0 0 1123445555544322
Q ss_pred --CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccC
Q 004921 360 --KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 360 --~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~ 437 (723)
....|++||++|.+. ....|.||..++ ++..++++|..|+.++.+.|.+++ |. ..+.++
T Consensus 85 e~~~~KV~II~~ae~m~--------------~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN--------------KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhC--------------HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 224699999999984 347899999998 466778999999999999999999 65 335565
Q ss_pred CC
Q 004921 438 RP 439 (723)
Q Consensus 438 ~P 439 (723)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 266
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=6e-05 Score=77.36 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.++|+|+||||||+||.+++..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 267
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.72 E-value=0.00017 Score=79.84 Aligned_cols=79 Identities=27% Similarity=0.381 Sum_probs=55.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH------hhh--------hhhHHHHHHHHHHcC
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF------VGV--------GASRVRDLFEKAKSK 360 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~------~G~--------~~~~vr~lF~~A~~~ 360 (723)
|+....-++|+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+..+++.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34445568999999999999999998754 4578888765432211 111 122355677777778
Q ss_pred CCeEEEEcCccchhhh
Q 004921 361 APCIVFIDEIDAVGRQ 376 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~ 376 (723)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=0.00022 Score=73.25 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH-HH---Hhhh-------------------hhhHHH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-EL---FVGV-------------------GASRVR 351 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~-~~---~~G~-------------------~~~~vr 351 (723)
|+....-++|+||||+|||+++..+|.+. +.+++++++..+. +. ..+. ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 44445568999999999999999998744 6777888776221 11 1110 001112
Q ss_pred HHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 352 DLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 352 ~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.+..... ..+.+|+||-+.++....-.. ........+.+..++..|..+....++.++.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222122 578999999999986532110 1122233344444444443333344555655433
No 269
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=3.3e-05 Score=79.57 Aligned_cols=26 Identities=42% Similarity=0.818 Sum_probs=21.8
Q ss_pred CCCCcc--eEEeCCCCCcHHHHHHHHHH
Q 004921 299 AKIPKG--CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 299 ~~~p~g--vLL~GPpGtGKT~LAralA~ 324 (723)
...++| +-|.||+|||||||.+.+|+
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444 88999999999999999998
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.66 E-value=0.00012 Score=75.24 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=21.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
.|.-+||||+||+|||++|+.+++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356799999999999999999974
No 271
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.64 E-value=0.00044 Score=79.46 Aligned_cols=120 Identities=33% Similarity=0.351 Sum_probs=68.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeech--hhHHHHHhhhhhh-----HHHHHHHHHH---cCCCeEEEEcCcc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA--SEFVELFVGVGAS-----RVRDLFEKAK---SKAPCIVFIDEID 371 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~--s~~~~~~~G~~~~-----~vr~lF~~A~---~~aP~ILfIDEiD 371 (723)
.-+|||+|-||||||-+.+.+++-+..-.+. ++ +.- +|.++. ..+++.-+.- .....|-+|||+|
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSa----vGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSA----VGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccch----hcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 3479999999999999999999876433322 21 111 111110 1111111111 0223588999999
Q ss_pred chhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----------CCCCceEEEEeeCCCC-------------CCCccccCC
Q 004921 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----------SGNSGVIVLAATNRPD-------------VLDSALLRP 427 (723)
Q Consensus 372 ~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----------~~~~~ViVIaaTN~p~-------------~LD~aLlrp 427 (723)
.+-.. +.+-|++.|+.- .-+...-|||+.|... .|+|.|++
T Consensus 537 KM~dS--------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS- 601 (804)
T KOG0478|consen 537 KMSDS--------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS- 601 (804)
T ss_pred hhhHH--------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh-
Confidence 99321 223333434321 1122346889999532 38899999
Q ss_pred CCccccc-ccCCCCHH
Q 004921 428 GRFDRQV-TVDRPDVA 442 (723)
Q Consensus 428 gRfd~~I-~v~~Pd~~ 442 (723)
|||.++ -++.||..
T Consensus 602 -RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 -RFDLIFLLLDKPDER 616 (804)
T ss_pred -hhcEEEEEecCcchh
Confidence 999866 45566665
No 272
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.59 E-value=0.0024 Score=67.47 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=58.9
Q ss_pred cccchHhHHHHHHHHH-HhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----Cceeeec-------hhh
Q 004921 271 VAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFSCA-------ASE 337 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~-~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-----~p~i~is-------~s~ 337 (723)
+.|+.-+++.+-..+. ++.++. .+.|--+=|+|++||||.+.++.||+..- -+++..- -..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 6788888876665554 455543 23455677999999999999999999662 2222110 111
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
-++.|..+-...+++. +...+.+|.++||+|.+.
T Consensus 158 ~ie~Yk~eL~~~v~~~---v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGT---VQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCCceEEechhhhcC
Confidence 2233333333444443 334556799999999994
No 273
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.58 E-value=0.0004 Score=75.15 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-H---hh------------hhhhHHHHHHHHHH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-F---VG------------VGASRVRDLFEKAK 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~-~---~G------------~~~~~vr~lF~~A~ 358 (723)
|.+..+-++|+||||||||+||..++.++ |.+++++++.+..+. + .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34444568999999999999988776544 677777776443221 0 11 11122222233345
Q ss_pred cCCCeEEEEcCccchhhhcCCC-CCCCC--hHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 359 SKAPCIVFIDEIDAVGRQRGAG-LGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~~-~~~~~--~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
...+.+|+||-+.++.++..-. ..+.. ....+.++++|..|...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5778999999999987642211 00111 122234456666665555556667776643
No 274
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.00068 Score=72.92 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=87.2
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCC-----------c--eeeechhhHHHHHhhhhhhHHHHHHHHHHc-----CC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGV-----------P--FFSCAASEFVELFVGVGASRVRDLFEKAKS-----KA 361 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~-----------p--~i~is~s~~~~~~~G~~~~~vr~lF~~A~~-----~a 361 (723)
+.++..||+|+.|.||+.+|+.++..+-+ | ++.++.. +. .-....++++.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCC
Confidence 45677999999999999999999987622 1 1222200 00 0112345555554422 24
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCH
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~ 441 (723)
..|++||++|.+. ....|.||..++. +...+++|..|+.++.|-+.+++ |+ .++.+.+|+.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 5799999998873 3477889999985 44556777777788899999988 44 5689999998
Q ss_pred HHHHHHHHH
Q 004921 442 AGRVKILQV 450 (723)
Q Consensus 442 ~~R~~Il~~ 450 (723)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877766653
No 275
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.57 E-value=0.00027 Score=85.19 Aligned_cols=211 Identities=17% Similarity=0.215 Sum_probs=123.7
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHHhcCc--hhhhhhCCCCC-c-ceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNP--DKYTALGAKIP-K-GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~--~~~~~~g~~~p-~-gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
..+...+.+....++.|.......+.+.++..+++ ..|...+.... + .+|++||||.|||+.+.++|++.|..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 34555566677788888877665555444433322 11221111111 1 36999999999999999999999999999
Q ss_pred echhhHHHHHh-----hh--hhhHHHHHHH---HH--HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 333 CAASEFVELFV-----GV--GASRVRDLFE---KA--KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 333 is~s~~~~~~~-----G~--~~~~vr~lF~---~A--~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
.|.++..+... +. +...+...|. .. ....-.||++||+|.+... +.-.-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~--------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE--------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--------hhhhHHHHHHHHH---
Confidence 99886654321 11 1122333330 00 0111239999999998641 0011123333333
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
....-+|+++|..+......+. |-+..++|+.|+...+..-+...+....+. .+-.++++...+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2223477777776655543333 444678999999998877776665443322 333467777766 45887
Q ss_pred HHHHHHHHH
Q 004921 480 NLMNEAAIL 488 (723)
Q Consensus 480 ~lv~~A~~~ 488 (723)
+.++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 777765444
No 276
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.51 E-value=0.0025 Score=70.86 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=39.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh----cCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e----~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
..++++.||+|||||+++.+++.. .| -.++.+.+...... ..+... ....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~v--~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGLV--GRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhhh--ccCCEEEEEcCCCCc
Confidence 357999999999999999998776 24 33344444432211 112221 345799999998863
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.51 E-value=0.00067 Score=70.31 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh----HHHHHh--hh------------------------
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----FVELFV--GV------------------------ 345 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~----~~~~~~--G~------------------------ 345 (723)
.+...-+++.||||||||+++..++... |.+.++++..+ +..... |.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 3444568999999999999986554422 56666666432 111100 00
Q ss_pred -hhhHHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 346 -GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 346 -~~~~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
....+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233344555555678999999998864
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.47 E-value=0.00064 Score=70.34 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=30.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s 336 (723)
|.+....++++||||+|||+++..++.+ .|.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5555667999999999999999999654 36677777653
No 279
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.46 E-value=0.0005 Score=69.61 Aligned_cols=104 Identities=25% Similarity=0.390 Sum_probs=60.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh-----cCCce-------------eeechhhHHH----HHhhhhhhHHHHHHHHHHcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE-----AGVPF-------------FSCAASEFVE----LFVGVGASRVRDLFEKAKSK 360 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e-----~~~p~-------------i~is~s~~~~----~~~G~~~~~vr~lF~~A~~~ 360 (723)
+-++|+||+|+|||++.|.++.. .|.++ ..++..+-.. .+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 56899999999999999999853 34332 1111111110 11 11225577777777656
Q ss_pred CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.|.+|++||.-.-. +..........++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 89999999973311 111222344555665532 245678888876643
No 280
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.45 E-value=0.00059 Score=72.85 Aligned_cols=159 Identities=19% Similarity=0.354 Sum_probs=92.3
Q ss_pred cccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHH-HH--hcCCceeeechhhHHH--H---
Q 004921 271 VAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV-AG--EAGVPFFSCAASEFVE--L--- 341 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAral-A~--e~~~p~i~is~s~~~~--~--- 341 (723)
+.|...-.+.+.+++.. .-..+ ...+++.||.|+|||++.... +. +.|-.|+.+....+.. +
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 45666666677777665 22211 357999999999999977544 33 6676776655432211 0
Q ss_pred ----------------HhhhhhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 342 ----------------FVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 342 ----------------~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
..|.....+..++...+. ..+.|.++||||.+++. .++..+..|+..-.
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDisq 166 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHHh
Confidence 112222233333333332 22345566799998653 11223333333222
Q ss_pred CCCCCCceEEEEeeCCCCC---CCccccCCCCcccc-cccCCC-CHHHHHHHHHHHh
Q 004921 401 GFSGNSGVIVLAATNRPDV---LDSALLRPGRFDRQ-VTVDRP-DVAGRVKILQVHS 452 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~---LD~aLlrpgRfd~~-I~v~~P-d~~~R~~Il~~~l 452 (723)
....++.||+.|.+.+. |.....+ ||... |++.++ ...+-.++++..+
T Consensus 167 --s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 --SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred --hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 23567899999998775 5567777 89655 666554 5777778887666
No 281
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.45 E-value=0.00038 Score=67.81 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.+..++|+||||||||++|+.+|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999988654
No 282
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.44 E-value=0.0001 Score=67.71 Aligned_cols=31 Identities=39% Similarity=0.766 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
++|.||||+|||++|+.||..+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 283
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0037 Score=70.04 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=72.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~ 383 (723)
-++|+||.+||||++++.+.+...-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 789999999999999988888775556666665554322111 112222333332245799999998862
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 004921 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (723)
Q Consensus 384 ~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~ 446 (723)
.+...+..+..... . .+++.+++...-....+-.=+||. ..+.+.+.+..+...
T Consensus 108 ---~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 ---DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 34455555544221 1 344444433333323333336784 677787888888754
No 284
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.0002 Score=70.46 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=30.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
-+++.||||+|||++|+.|+..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999988753
No 285
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.42 E-value=0.001 Score=74.01 Aligned_cols=227 Identities=24% Similarity=0.292 Sum_probs=124.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCC--CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec-hhhHHHHHhhhh
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGA--KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA-ASEFVELFVGVG 346 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~--~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is-~s~~~~~~~G~~ 346 (723)
+|.|++++|+.|.-++-. .+.+-..-|. +-.-+|+|.|.||+-|+-|.+.+.+-+-...+..- +|. -+|-+
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 588999999887544332 2222122233 33447999999999999999999987655444332 111 12222
Q ss_pred hhHHHHHHHH-------HH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc--CC--CCCCceEEEEee
Q 004921 347 ASRVRDLFEK-------AK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD--GF--SGNSGVIVLAAT 414 (723)
Q Consensus 347 ~~~vr~lF~~-------A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld--~~--~~~~~ViVIaaT 414 (723)
+.-+++-... |. -....|-+|||+|.+.... ......+..|--..+. |+ .-+-+.-|++|.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-------RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-------RTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-------hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 2222211000 00 0123588999999985321 0111111111111111 11 112345678888
Q ss_pred CCCC-------------CCCccccCCCCccccccc-CCCCHHHHHHHHH----HHhcCCCCCcc---ccH----------
Q 004921 415 NRPD-------------VLDSALLRPGRFDRQVTV-DRPDVAGRVKILQ----VHSRGKALAKD---VDF---------- 463 (723)
Q Consensus 415 N~p~-------------~LD~aLlrpgRfd~~I~v-~~Pd~~~R~~Il~----~~l~~~~l~~d---~dl---------- 463 (723)
|... .|+.||++ |||..+-+ +.||.+.-..+.+ .|.....-..+ ++.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a 567 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA 567 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence 8632 48999999 99986644 4676654443333 33322211100 110
Q ss_pred -------------------HHH---H--hhCC-CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 464 -------------------EKI---S--RRTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 464 -------------------~~L---a--~~t~-G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
-++ + ..-. -.|++-|..+++-+..+|..|-...+..+|+.+|+.-.-.
T Consensus 568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 011 1 0111 2367888888888888888888888999999999876544
No 286
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.42 E-value=0.0007 Score=69.12 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
|+....-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34444558999999999999999998764 5677777553
No 287
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00059 Score=65.90 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.+.-+.++|+||+|||+++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345569999999999999999999755
No 288
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.42 E-value=0.00026 Score=74.98 Aligned_cols=95 Identities=27% Similarity=0.442 Sum_probs=58.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC----------Cceeeec-hhhHHHHHhhh-------------hhhHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG----------VPFFSCA-ASEFVELFVGV-------------GASRVRDLFEKAK 358 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~----------~p~i~is-~s~~~~~~~G~-------------~~~~vr~lF~~A~ 358 (723)
++++|.||+|+|||+|.+++++... ..+..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2332222 12332211111 1122345666777
Q ss_pred cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 359 SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
...|.+|++||+.. ...+..++..+. .+..+|++|+.++
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhH
Confidence 78999999999621 123444555443 3567888888643
No 289
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.00068 Score=73.49 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-H---hhh------------hhhHHHHHHHHHHc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-F---VGV------------GASRVRDLFEKAKS 359 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~-~---~G~------------~~~~vr~lF~~A~~ 359 (723)
.+..+-+.++||||||||+||-.++.++ |.+.++++..+-.+. + .|. .+..+..+-...+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3444458899999999999999876543 677778776432211 0 111 11112222222355
Q ss_pred CCCeEEEEcCccchhhhcCC-CCCCCC--hHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 360 KAPCIVFIDEIDAVGRQRGA-GLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~~-~~~~~~--~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
..+.+|+||-+-++.++... +..+.. ....+.+.+.|..|...-...++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67899999999998763221 111111 112234455555555444455566666533
No 290
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.37 E-value=0.002 Score=69.93 Aligned_cols=137 Identities=17% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH------HHhh-------------hhhhHHH---HHHHH-
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE------LFVG-------------VGASRVR---DLFEK- 356 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~------~~~G-------------~~~~~vr---~lF~~- 356 (723)
..|..+.|+|..|||||.+.+.+-+.++.|.+.+++-+... .... .....+. .+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 46888999999999999999999999999999998865432 1110 0011222 23333
Q ss_pred --HHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcc-c
Q 004921 357 --AKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFD-R 432 (723)
Q Consensus 357 --A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd-~ 432 (723)
+.+. .--.|++|.+|.+-. ...-.++.|+..-+-.... .+.++......+. .-+.+-|-++ .
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD-----------~~a~ll~~l~~L~el~~~~-~i~iils~~~~e~--~y~~n~g~~~i~ 173 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD-----------MDAILLQCLFRLYELLNEP-TIVIILSAPSCEK--QYLINTGTLEIV 173 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc-----------cchHHHHHHHHHHHHhCCC-ceEEEEeccccHH--HhhcccCCCCce
Confidence 1122 245889999999942 2223455555443322222 2223322222111 1122223333 3
Q ss_pred ccccCCCCHHHHHHHHHH
Q 004921 433 QVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 433 ~I~v~~Pd~~~R~~Il~~ 450 (723)
.++||.|+.++...|+..
T Consensus 174 ~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 174 VLHFPQYSVEETQVILSR 191 (438)
T ss_pred EEecCCCCHHHHHHHHhc
Confidence 679999999999998864
No 291
>PF14516 AAA_35: AAA-like domain
Probab=97.37 E-value=0.0083 Score=65.63 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH-----------HHHhhh--------------------hhh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-----------ELFVGV--------------------GAS 348 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~-----------~~~~G~--------------------~~~ 348 (723)
.-+.|.||..+|||++...+...+ |...+++++..+. ..+... ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 348999999999999998886544 6777777764321 100000 111
Q ss_pred HHHHHHHHH---HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC---CCce-EEEEeeCCCCCCC
Q 004921 349 RVRDLFEKA---KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG---NSGV-IVLAATNRPDVLD 421 (723)
Q Consensus 349 ~vr~lF~~A---~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~---~~~V-iVIaaTN~p~~LD 421 (723)
.....|+.. ....|-||+|||||.+.... ......+..|-...+.-.. -..+ ++++-+..+....
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 223344432 22568999999999996421 1122233333332221111 1122 3333333222222
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
..-.+|=.+...|.++.-+.++...+++.|-.. +... .++.+-..+.| -|-=+..+|...
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgG-hP~Lv~~~~~~l 243 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGG-HPYLVQKACYLL 243 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCC-CHHHHHHHHHHH
Confidence 222344445567778877889988888876432 2222 27777778877 565555554443
No 292
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.33 E-value=0.0013 Score=74.83 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=53.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh------hh--------hhhHHHHHHHHHHcC
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV--------GASRVRDLFEKAKSK 360 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~------G~--------~~~~vr~lF~~A~~~ 360 (723)
|+....-+||+|+||+|||+|+..++... +.++++++..+-.+... |. .+..+..+.+.+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 44445568999999999999999987754 45788887654332211 11 112345566666777
Q ss_pred CCeEEEEcCccchhh
Q 004921 361 APCIVFIDEIDAVGR 375 (723)
Q Consensus 361 aP~ILfIDEiD~l~~ 375 (723)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998854
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.30 E-value=0.0044 Score=66.96 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC---CCC------------ccc
Q 004921 360 KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD---VLD------------SAL 424 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~---~LD------------~aL 424 (723)
..+-||||||+|.+.+. .+.++|..+..+-...++++|.+.+.-. .+. ...
T Consensus 171 ~~~iViiIDdLDR~~~~--------------~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE--------------EIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcCCcH--------------HHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 34679999999998432 3344444444444457788887776421 111 111
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHh
Q 004921 425 LRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 425 lrpgRfd~~I~v~~Pd~~~R~~Il~~~l 452 (723)
+.. -|+..+.+|.|+..+...++...+
T Consensus 237 LeK-iiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 237 LEK-IIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHh-hcCeEEEeCCCCHHHHHHHHHHHH
Confidence 211 467788999999988888877664
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.00058 Score=75.42 Aligned_cols=109 Identities=21% Similarity=0.372 Sum_probs=62.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc----C-CceeeechhhH-------HHH---Hhhhh------hhHHHHHHHHHHcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA----G-VPFFSCAASEF-------VEL---FVGVG------ASRVRDLFEKAKSK 360 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~----~-~p~i~is~s~~-------~~~---~~G~~------~~~vr~lF~~A~~~ 360 (723)
...++|.||+|+|||+++..||..+ | ..+..+....+ ... ..|.. ...+...+... .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 4578999999999999999998753 3 23434433322 111 11211 11223333333 3
Q ss_pred CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-CCceEEEEeeCCCCCCCcccc
Q 004921 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPDVLDSALL 425 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~aLl 425 (723)
...+|+||...... ....+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 215 ~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 215 NKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 34799999985331 12235555555544332 345788888888777665443
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.26 E-value=0.00039 Score=68.67 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=29.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
+++.|+||+|||+||+.++...+.|++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 7899999999999999999999999888765433
No 296
>PRK10536 hypothetical protein; Provisional
Probab=97.25 E-value=0.0009 Score=69.98 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.||+|||||+||.+++-+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999884
No 297
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.25 E-value=0.0023 Score=58.53 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=20.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988877655
No 298
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.23 E-value=0.00021 Score=71.91 Aligned_cols=123 Identities=19% Similarity=0.256 Sum_probs=58.8
Q ss_pred eEEeCCCCCcHHHHHHHH-HH---hcCCceeeechhhHH-HHHh---hhhhh-------------HHHHHHHHHHcCCCe
Q 004921 305 CLLVGPPGTGKTLLARAV-AG---EAGVPFFSCAASEFV-ELFV---GVGAS-------------RVRDLFEKAKSKAPC 363 (723)
Q Consensus 305 vLL~GPpGtGKT~LAral-A~---e~~~p~i~is~s~~~-~~~~---G~~~~-------------~vr~lF~~A~~~aP~ 363 (723)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +... +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988555 33 23666665 433221 1100 00000 001111111112468
Q ss_pred EEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCC
Q 004921 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 439 (723)
Q Consensus 364 ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~P 439 (723)
+|+|||++.+.+.+... .......+ +++.. ....++-++.+|-.+..||+.+++ ..+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998876541 01112233 33322 335677899999999999999987 77777666443
No 299
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.23 E-value=0.0011 Score=67.97 Aligned_cols=117 Identities=24% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---C------CceeeechhhH------HHHHhh-----------------h
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---G------VPFFSCAASEF------VELFVG-----------------V 345 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~------~p~i~is~s~~------~~~~~G-----------------~ 345 (723)
|.....-+.|+||||+|||+++..+|... + ..+++++..+- ...... .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 44445568999999999999999997653 3 55666665431 110000 0
Q ss_pred hhhHHHHHHHHH----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 346 GASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 346 ~~~~vr~lF~~A----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
....+...+... ....+++|+||-+..+....... ........+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 011112222222 24567899999999886532110 0011234456666766666665455566665543
No 300
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.20 E-value=0.0016 Score=67.02 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhhH------HHHHh--h----------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELFV--G---------------- 344 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~~------~~~~~--G---------------- 344 (723)
|.+...-+.|+||||+|||+++..++... +...++++..+- .+... +
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 44555568999999999999999997543 256677765431 11000 0
Q ss_pred ---hhhhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 345 ---VGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 345 ---~~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
+....+..+-...... .+.+|+||-+..+......+ .....+..+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0011112222223344 78999999999885421110 0111344556666677666555455566665543
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.20 E-value=0.00097 Score=62.91 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=27.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
+++.||||+|||++|+.+++..+. ..++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHHHHH
Confidence 689999999999999999999984 44555555543
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.0012 Score=66.81 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=42.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCC----ceeeech-hhHHH---------HHhhhhhhHHHHHHHHHHcCCCeEEEEcCc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGV----PFFSCAA-SEFVE---------LFVGVGASRVRDLFEKAKSKAPCIVFIDEI 370 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~----p~i~is~-s~~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfIDEi 370 (723)
+++.||+|+|||++++++++.... .++.+.. .++.. .-+|.......+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887642 2222211 11110 011222233455666777788999999998
No 303
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.18 E-value=0.0036 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
-.++|+||+||||++|.|++|.-
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 35899999999999999999973
No 304
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.17 E-value=0.0014 Score=61.19 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=39.0
Q ss_pred ccccchHhHHHHHHHHH-HhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 270 DVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~-~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.|.|++-+++.+-+.+. ++.++. .+.|--+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 58899999888777665 465531 2335556699999999999999999975
No 305
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.15 E-value=0.0044 Score=64.99 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGV 328 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~ 328 (723)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 4899999999999999999987643
No 306
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0015 Score=72.15 Aligned_cols=72 Identities=28% Similarity=0.436 Sum_probs=43.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC-----Cceeeechhh-------HHHHHhh---------hhhhHHH---HHHHHHH--
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAG-----VPFFSCAASE-------FVELFVG---------VGASRVR---DLFEKAK-- 358 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~-----~p~i~is~s~-------~~~~~~G---------~~~~~vr---~lF~~A~-- 358 (723)
.+|+||||+|||+|++.|++... +.++.+-..+ +.....| ....+++ .+++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998663 3322222212 2221111 1122222 3334443
Q ss_pred --cCCCeEEEEcCccchhhh
Q 004921 359 --SKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 359 --~~aP~ILfIDEiD~l~~~ 376 (723)
.....+||||||+.+...
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 245689999999999753
No 307
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.14 E-value=0.0022 Score=65.83 Aligned_cols=108 Identities=23% Similarity=0.274 Sum_probs=60.7
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHH----HH----------Hhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV----EL----------FVGV-------------- 345 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~----~~----------~~G~-------------- 345 (723)
|.+....+|+.||||||||+++..++.+. |-+.++++..+-. +. +...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 55556679999999999999998775432 7787777753221 11 1000
Q ss_pred -----hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 346 -----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 346 -----~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.......+-+..+...+.+++||-+..+. ... ........+..|...+. ..++.++.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01112333334455667899999999982 211 12334445566666553 33444444444
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.13 E-value=0.0005 Score=78.84 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=42.5
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-CCceeeec
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCA 334 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is 334 (723)
-|+|+.|++++++.+-+.+.. .- ..++ ...+-++|.||||+|||+||+.||+.+ ..|++.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~~---Aa--~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH---AA--QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH---HH--HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 588999999998766554421 10 0111 123478999999999999999999865 23555543
No 309
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.12 E-value=0.0012 Score=73.59 Aligned_cols=172 Identities=23% Similarity=0.267 Sum_probs=80.7
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHH
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRV 350 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~v 350 (723)
|.|.+++|+.+.=++-.-.....-..+..+-.-+|||.|.|||-|+-|.|-+-+-.-+-++. ++-. +.-.|-+++-+
T Consensus 333 IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~ 409 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVI 409 (729)
T ss_pred hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEE
Confidence 56777777665432211111000011112223469999999999999999887655433332 2100 00011111111
Q ss_pred H-----HHHHHHH---cCCCeEEEEcCccchhhhcCCCCCCCChHHH-HHHHHHHHhhcCC--CCCCceEEEEeeCCCC-
Q 004921 351 R-----DLFEKAK---SKAPCIVFIDEIDAVGRQRGAGLGGGNDERE-QTINQLLTEMDGF--SGNSGVIVLAATNRPD- 418 (723)
Q Consensus 351 r-----~lF~~A~---~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~-~~ln~LL~~ld~~--~~~~~ViVIaaTN~p~- 418 (723)
| +.+-+.- -....|++|||+|.+-...- ..-++..+ |++.- -. -|+ .-+++.-|+||.|.+-
T Consensus 410 RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR---VAIHEAMEQQTISI-AK--AGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR---VAIHEAMEQQTISI-AK--AGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred ecCCcceEEEecceEEEecCCEEEeehhhccCchhh---hHHHHHHHhhhHHH-hh--hcceeeecchhhhhhhcCCccc
Confidence 1 1110000 01235999999999832100 00011111 11110 00 111 1134456888888641
Q ss_pred ----------CC--CccccCCCCcccccccCCCCHHHH-----HHHHHHHhc
Q 004921 419 ----------VL--DSALLRPGRFDRQVTVDRPDVAGR-----VKILQVHSR 453 (723)
Q Consensus 419 ----------~L--D~aLlrpgRfd~~I~v~~Pd~~~R-----~~Il~~~l~ 453 (723)
.| -+.+++ |||.++-+.--..++| ..++..|..
T Consensus 484 RyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~ 533 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVS 533 (729)
T ss_pred cccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhcc
Confidence 23 377888 9999888765433333 345556664
No 310
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0019 Score=77.74 Aligned_cols=160 Identities=24% Similarity=0.317 Sum_probs=105.6
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeechhh
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASE 337 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~s~ 337 (723)
++-++|. .-++++++++.|.... .++-+|.|.||+|||.++.-+|... +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 5556665 2344566666654432 2567999999999999999998854 33455555544
Q ss_pred HH--HHHhhhhhhHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 338 FV--ELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 338 ~~--~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
+. .++.|+.+.+++.+...+. .....||||||++.+...... .-.....| +|..+-. .+++-+|+||
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~n-lLkp~L~---rg~l~~IGat 323 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAAN-LLKPLLA---RGGLWCIGAT 323 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHH-hhHHHHh---cCCeEEEecc
Confidence 33 3567888999999999888 455679999999999654322 11222333 3333322 3447788887
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHH
Q 004921 415 NRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVH 451 (723)
Q Consensus 415 N~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~ 451 (723)
..-. .=||++-| ||+ .+.++.|+.+.-..||+..
T Consensus 324 T~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGL 362 (898)
T ss_pred cHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhh
Confidence 7432 35899999 886 5677888877766666543
No 311
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0012 Score=64.99 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=30.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.+.|.|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999999876
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.11 E-value=0.0039 Score=64.79 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=30.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s 336 (723)
|......+|++||||+|||+++..++.+ .|-+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5566677999999999999999876543 36777777654
No 313
>PRK06762 hypothetical protein; Provisional
Probab=97.10 E-value=0.0017 Score=63.23 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=32.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5668999999999999999999998666767776666543
No 314
>PRK09354 recA recombinase A; Provisional
Probab=97.05 E-value=0.0032 Score=68.94 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH-H---hhh------------hhhHHHHHHHHHHc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL-F---VGV------------GASRVRDLFEKAKS 359 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~-~---~G~------------~~~~vr~lF~~A~~ 359 (723)
.+..+-++|+||||||||+|+-.++.++ |...++++..+-.+. + .|. .+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3444568899999999999998776543 677777776542221 1 011 11111112222345
Q ss_pred CCCeEEEEcCccchhhhcCC-CCCCC--ChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 360 KAPCIVFIDEIDAVGRQRGA-GLGGG--NDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~~-~~~~~--~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
..+.+|+||-+-++.++..- +..+. .....+.+.+.|..+-+.-...++.+|.+
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 67899999999998753211 11111 11222344444444444434455666665
No 315
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.04 E-value=0.0019 Score=79.86 Aligned_cols=133 Identities=29% Similarity=0.335 Sum_probs=88.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH--Hhh-----h--hhhHHH-HHHHHHHcCCCeEEEEcCcc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--FVG-----V--GASRVR-DLFEKAKSKAPCIVFIDEID 371 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~--~~G-----~--~~~~vr-~lF~~A~~~aP~ILfIDEiD 371 (723)
.+++||.|.||+|||.|..|+|++.|-.++.++.++-.+. ..| + ++-+.+ .=|-.|.+. ..-+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhh
Confidence 4679999999999999999999999999999998754331 111 1 111111 223333332 2488999985
Q ss_pred chhhhcCCCCCCCChHHHHHHHHHHHhhcCC------------CCCCceEEEEeeCCCC------CCCccccCCCCcccc
Q 004921 372 AVGRQRGAGLGGGNDEREQTINQLLTEMDGF------------SGNSGVIVLAATNRPD------VLDSALLRPGRFDRQ 433 (723)
Q Consensus 372 ~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~------------~~~~~ViVIaaTN~p~------~LD~aLlrpgRfd~~ 433 (723)
-. .+.++..|-.++|.- .-..+..|.||-|.-+ .|+..++. || .+
T Consensus 1622 La--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-sv 1684 (4600)
T COG5271 1622 LA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SV 1684 (4600)
T ss_pred hh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-he
Confidence 43 234555555555432 2345678888888643 48899998 89 46
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 004921 434 VTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 434 I~v~~Pd~~~R~~Il~~~l 452 (723)
++++..+.++...|.+...
T Consensus 1685 V~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred EEecccccchHHHHHHhhC
Confidence 7777777777766666544
No 316
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.03 E-value=0.0033 Score=66.37 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=28.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
|.....-++|.||||+|||+++..++... |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34444568999999999999999886653 667777765
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.99 E-value=0.0013 Score=66.48 Aligned_cols=98 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH----HHhhhhhhHHHHHHHHHHc---------CCCeEEE
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVGASRVRDLFEKAKS---------KAPCIVF 366 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----~~~G~~~~~vr~lF~~A~~---------~aP~ILf 366 (723)
+-.++.||||||||++++.+...+ +..++.+..+.-.. ...+.....+..++..... ....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357899999999999999886543 66666665432111 1112222233333222211 2237999
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
|||+..+.. ..+..|+..+.. ...++++++=.+.
T Consensus 99 VDEasmv~~--------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS--------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH--------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH--------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999977632 245666665553 2446777775554
No 318
>PRK13947 shikimate kinase; Provisional
Probab=96.99 E-value=0.00067 Score=66.34 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=28.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998765
No 319
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.99 E-value=0.0068 Score=61.34 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=26.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 346899999999999999999999987653
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.98 E-value=0.0016 Score=63.73 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=60.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhh--------HHHHHhh-----hhhhHHHHHHHHHHcCCCeEEE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE--------FVELFVG-----VGASRVRDLFEKAKSKAPCIVF 366 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~--------~~~~~~G-----~~~~~vr~lF~~A~~~aP~ILf 366 (723)
...+.|.||+|+|||+|.+.+++.... --+.++..+ .....++ .+..+-+-.+..|....|.+|+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 345889999999999999999986521 011222111 1111111 1122445567777778899999
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
+||-..- -+....+.+..++.++. .. +..+|.+|+.++.
T Consensus 106 lDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~ 144 (163)
T cd03216 106 LDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDE 144 (163)
T ss_pred EECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 9996432 23344555556665553 12 3456667776553
No 321
>PRK05973 replicative DNA helicase; Provisional
Probab=96.98 E-value=0.0034 Score=65.22 Aligned_cols=39 Identities=36% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
|.....-++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 34444468999999999999998876644 7777777754
No 322
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.97 E-value=0.0013 Score=62.91 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=28.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999988655
No 323
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.97 E-value=0.0021 Score=73.25 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=41.3
Q ss_pred ccccchHhHHHHHHHHHH--hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 270 DVAGADQAKLELQEVVDF--LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~--l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.|.|++.+|..+.-.+-. -+++.. +..++-.-+|||+|-|||||+-+.|.+++-....++..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 467888888766533321 233321 11223334799999999999999999999877666553
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0017 Score=64.63 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=26.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
-++|.||||+||||+|+.||+.+ ++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 38999999999999999999994 45555544443
No 325
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.96 E-value=0.00079 Score=71.16 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=62.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc---eeeech-hhH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAA-SEF 338 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p---~i~is~-s~~ 338 (723)
....+++++.-.+...+.+.+++...- +....+++.||+|+|||++++++..+.... ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 445689998877766666666555421 113579999999999999999999877333 333321 111
Q ss_pred HHH------Hh-hhhhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 339 VEL------FV-GVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 339 ~~~------~~-G~~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
.-. +. ........+++..+.+..|++|+|+|+..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 100 00 12344567888888899999999999943
No 326
>PRK13946 shikimate kinase; Provisional
Probab=96.95 E-value=0.0028 Score=63.26 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=31.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
.++.|+|.|+||+|||++++.+|+.+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35679999999999999999999999999987763
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0026 Score=70.73 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=63.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc-------CCc--eeeechhhH-----HHHHh---h------hhhhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA-------GVP--FFSCAASEF-----VELFV---G------VGASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~-------~~p--~i~is~s~~-----~~~~~---G------~~~~~vr~lF~~A 357 (723)
.|+-++|+||+|+|||+++..+|..+ +.. ++.+++... ...|. | .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999888754 233 444443111 11111 1 1122333334443
Q ss_pred HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC-CceEEEEeeCCCCCCCcccc
Q 004921 358 KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN-SGVIVLAATNRPDVLDSALL 425 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLl 425 (723)
....+|+||.+..... + ...+.++...++..... ..++|+.+|.....+...+.
T Consensus 253 --~~~DlVLIDTaGr~~~---------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3347999999976521 1 11244555555544333 46788888887766664443
No 328
>PRK03839 putative kinase; Provisional
Probab=96.94 E-value=0.00069 Score=67.06 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=27.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++|.|+||+|||++++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999997755
No 329
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.93 E-value=0.0062 Score=62.34 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=57.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHH-----hcCCceeee--------------chhhHHHHHhhhhhhHHHHHHH-HHHcCC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAG-----EAGVPFFSC--------------AASEFVELFVGVGASRVRDLFE-KAKSKA 361 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~-----e~~~p~i~i--------------s~s~~~~~~~G~~~~~vr~lF~-~A~~~a 361 (723)
++.++|+||.|+|||++.|.++. ..|.++..- ...+-...........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36699999999999999999973 234322111 1111011111111122222221 122356
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCcc
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 423 (723)
|++++|||+..-. +..+.......++..+-. ....+..+|.+|+..+.+...
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhh
Confidence 8999999985421 112233444455555432 111234677888887654443
No 330
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.90 E-value=0.00055 Score=67.25 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=33.4
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCc---eeeechhhH
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVP---FFSCAASEF 338 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p---~i~is~s~~ 338 (723)
++|.++..++|...+.. . ....++.++|+|++|+|||++.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46776665555554431 1 12345789999999999999999887765332 666666554
No 331
>PRK00625 shikimate kinase; Provisional
Probab=96.89 E-value=0.00088 Score=66.37 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=29.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|+|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.0049 Score=63.75 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
|.....-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 55555568999999999999998876543 778887774
No 333
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.88 E-value=0.0087 Score=59.13 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH-----HHHhh------------hhhhHHHHHHHHHHcCCCeEEE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV-----ELFVG------------VGASRVRDLFEKAKSKAPCIVF 366 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~-----~~~~G------------~~~~~vr~lF~~A~~~aP~ILf 366 (723)
-+|+.||||+|||++|..++.+.+.+++++...... ..... +....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 389999999999999999999988887777654321 11100 0011233333321 12356899
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
||-+..+..+.-.. .........+..|+..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99998886543210 0002233445556666653
No 334
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0028 Score=63.69 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=41.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---CCceeeech--h--hHHH---HHhhhh-----hhHHHHHHHHHH--cCCCeEEE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA--S--EFVE---LFVGVG-----ASRVRDLFEKAK--SKAPCIVF 366 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~--s--~~~~---~~~G~~-----~~~vr~lF~~A~--~~aP~ILf 366 (723)
-.+++||||+|||+++..++..+ +..++.+.. . .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 36899999999999998887654 555555532 1 1100 011110 112344444443 34568999
Q ss_pred EcCccch
Q 004921 367 IDEIDAV 373 (723)
Q Consensus 367 IDEiD~l 373 (723)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 335
>PRK13949 shikimate kinase; Provisional
Probab=96.87 E-value=0.0017 Score=63.97 Aligned_cols=31 Identities=42% Similarity=0.617 Sum_probs=29.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|.||||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 336
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.85 E-value=0.0099 Score=61.00 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
|.....-+++.|+||+|||+++..++.+. |.+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44555578999999999999998887543 6677777654
No 337
>PLN02200 adenylate kinase family protein
Probab=96.85 E-value=0.0013 Score=68.38 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=32.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
.+.|.-+++.||||+|||++|+.+|..+|.+. ++.++++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 44566789999999999999999999998764 55556654
No 338
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.84 E-value=0.043 Score=59.47 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCeEEEEcCccchhhhcCC---CCCCCChHHHHHHHHHHHhhcCCCC-CCceEE--EEeeCCC---C--CCCccccCCCC
Q 004921 361 APCIVFIDEIDAVGRQRGA---GLGGGNDEREQTINQLLTEMDGFSG-NSGVIV--LAATNRP---D--VLDSALLRPGR 429 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~---~~~~~~~~~~~~ln~LL~~ld~~~~-~~~ViV--IaaTN~p---~--~LD~aLlrpgR 429 (723)
-|.++-||++..+.....- ....-+...-.+...|+..+.+-.. .+|.+| +++|... . .++.++....-
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 5889999999999865211 1111122333455555555433322 344444 5555432 2 35555543111
Q ss_pred ------cc-------------cccccCCCCHHHHHHHHHHHhcCCCCCcccc----HHHHHhhCCCCCHHHHHH
Q 004921 430 ------FD-------------RQVTVDRPDVAGRVKILQVHSRGKALAKDVD----FEKISRRTPGFTGADLQN 480 (723)
Q Consensus 430 ------fd-------------~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~d----l~~La~~t~G~sgadL~~ 480 (723)
|. ..|.++..+.+|-..+++.+....-+....+ .+.+...+ |.+++++.+
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 11 1578888899999999998876554432111 23333333 447777653
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=96.84 E-value=0.0096 Score=65.11 Aligned_cols=73 Identities=32% Similarity=0.372 Sum_probs=43.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH-------HHHHh---hh----------hhhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELFV---GV----------GASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~-------~~~~~---G~----------~~~~vr~lF~~A 357 (723)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+ ...+. |. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36779999999999999888887654 455544544322 11111 10 012233444444
Q ss_pred HcCCCeEEEEcCccch
Q 004921 358 KSKAPCIVFIDEIDAV 373 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l 373 (723)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4444579999998655
No 340
>PRK13948 shikimate kinase; Provisional
Probab=96.84 E-value=0.0022 Score=64.14 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=34.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
+.|..++|.|++|+|||++++.+|+.++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34678999999999999999999999999999766 34444333
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.83 E-value=0.0014 Score=65.46 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=44.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC--Cceeeechh-hHHH---HH----------hhhhhhHHHHHHHHHHcCCCeEE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAAS-EFVE---LF----------VGVGASRVRDLFEKAKSKAPCIV 365 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s-~~~~---~~----------~G~~~~~vr~lF~~A~~~aP~IL 365 (723)
...++|.||+|+|||++++++++... ...+.+... ++.- .+ .+.......+++..+.+..|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 35699999999999999999998652 122222110 1100 00 01112345677777888889999
Q ss_pred EEcCc
Q 004921 366 FIDEI 370 (723)
Q Consensus 366 fIDEi 370 (723)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99999
No 342
>PRK13808 adenylate kinase; Provisional
Probab=96.81 E-value=0.003 Score=68.67 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
|+|+||||+|||++++.|+..++++.+.+ .+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~--gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST--GDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc--cHHH
Confidence 89999999999999999999998766554 4444
No 343
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.81 E-value=0.0023 Score=66.95 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=49.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHH------hcCCceeeechhhHHHHH-hhhhhhHHHHHHHHHHc--------CCCeE
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAG------EAGVPFFSCAASEFVELF-VGVGASRVRDLFEKAKS--------KAPCI 364 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~------e~~~p~i~is~s~~~~~~-~G~~~~~vr~lF~~A~~--------~aP~I 364 (723)
+....+||.||.|.||++||+-+-. .+..+|+.++|..+...- +..--..++..|.-|+. ....+
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 3345699999999999999998843 567899999998765320 00001122333332221 23469
Q ss_pred EEEcCccchhh
Q 004921 365 VFIDEIDAVGR 375 (723)
Q Consensus 365 LfIDEiD~l~~ 375 (723)
||+|||..++.
T Consensus 286 lfldeigelga 296 (531)
T COG4650 286 LFLDEIGELGA 296 (531)
T ss_pred EehHhhhhcCc
Confidence 99999998854
No 344
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.81 E-value=0.0018 Score=71.07 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=45.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC----Cceeeech-hhHHH---------HHhhhhhhHHHHHHHHHHcCCCeEEEEc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAA-SEFVE---------LFVGVGASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~----~p~i~is~-s~~~~---------~~~G~~~~~vr~lF~~A~~~aP~ILfID 368 (723)
..++++||+|+|||++.+++.+... ..++.+.- .++.. .-.|.......+.+..+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 3589999999999999999988664 22333321 12110 0122222235666777788899999999
Q ss_pred Ccc
Q 004921 369 EID 371 (723)
Q Consensus 369 EiD 371 (723)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 345
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.80 E-value=0.01 Score=58.64 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=54.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhh-----HHHH---Hh---------hhhhhHHHHHHHHHHcCCCeEEEE
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE-----FVEL---FV---------GVGASRVRDLFEKAKSKAPCIVFI 367 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~-----~~~~---~~---------G~~~~~vr~lF~~A~~~aP~ILfI 367 (723)
+|++|++|+|||++|..++.+.+.+.+++.... +... +. .+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988777777776432 2221 10 011223334443222 4679999
Q ss_pred cCccchhhhcCCCCCC-CChHHHHHHHHHHHhhc
Q 004921 368 DEIDAVGRQRGAGLGG-GNDEREQTINQLLTEMD 400 (723)
Q Consensus 368 DEiD~l~~~r~~~~~~-~~~~~~~~ln~LL~~ld 400 (723)
|-+..+..+--..... ........+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 9998887653221000 00122344555666655
No 346
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0011 Score=63.29 Aligned_cols=32 Identities=34% Similarity=0.662 Sum_probs=29.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|++|-||||||+++..+|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 36999999999999999999999999988765
No 347
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.78 E-value=0.0092 Score=62.95 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s 336 (723)
|+.....++++||||||||+++..++.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4555567899999999999999987653 25677766643
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.77 E-value=0.0012 Score=65.28 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=27.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
++++||||+|||++|+.+|...+++.+. .++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is--~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS--AGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CChHHH
Confidence 6899999999999999999999865554 445443
No 349
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.76 E-value=0.023 Score=70.11 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=82.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechh-------hHHHHH---h-----hh---h------------hhHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS-------EFVELF---V-----GV---G------------ASRVRD 352 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s-------~~~~~~---~-----G~---~------------~~~vr~ 352 (723)
+-++++||+|.|||+++...+...+ ++..++.. .|...+ . +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3489999999999999999887766 65555442 111110 0 00 0 011223
Q ss_pred HHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc-cccCCCCc
Q 004921 353 LFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS-ALLRPGRF 430 (723)
Q Consensus 353 lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~-aLlrpgRf 430 (723)
++..... ..|.+|+|||++.+. +......+..|+..+ ..+..+|| ++.....+.- .+...+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~~l~~~~-- 174 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIANLRVRD-- 174 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchHhHHhcC--
Confidence 3333333 678999999999872 122334555555432 22333444 4544222211 111111
Q ss_pred ccccccC----CCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHH
Q 004921 431 DRQVTVD----RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 431 d~~I~v~----~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~ 479 (723)
..+.+. ..+.++-.+++...+.. .+ ...+...+.+.|.| .+.-+.
T Consensus 175 -~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~G-wp~~l~ 223 (903)
T PRK04841 175 -QLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEG-WATALQ 223 (903)
T ss_pred -cceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCC-hHHHHH
Confidence 233444 55778878887655432 22 23346778888887 344443
No 350
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.74 E-value=0.0047 Score=66.97 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh-H-----HHHH--hhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE-F-----VELF--VGVG-------------- 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~-~-----~~~~--~G~~-------------- 346 (723)
|+....-+.|+||||+|||.|+..+|-.+ +...++++..+ | .+.. .|..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 34444568899999999999998876422 34667776543 1 1100 0100
Q ss_pred -----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 347 -----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 347 -----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
...+..+-.......+.+|+||-|-++.+..-.+ .+...++++.+++++..|..+....++.||.+
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0111222222334568899999999887532111 11223444556676666665554555555554
No 351
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.74 E-value=0.0038 Score=72.33 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
++...+|+.||+|||||+|.|+||+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445699999999999999999998
No 352
>PRK14532 adenylate kinase; Provisional
Probab=96.74 E-value=0.0013 Score=65.55 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=29.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.++|.||||+|||++|+.||+..|.+++. ..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHHHH
Confidence 48999999999999999999999876665 4455443
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.74 E-value=0.0087 Score=62.58 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=28.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~ 338 (723)
|+|+|+||+|||++|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 566777765444
No 354
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.73 E-value=0.0061 Score=66.23 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhhH------HHHH--hhhhh-------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELF--VGVGA------------- 347 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~~------~~~~--~G~~~------------- 347 (723)
|+....-++|+||||+|||.++-.+|-.+ +...++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45555668999999999999999988653 336777765431 1100 01000
Q ss_pred ------hHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 348 ------SRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 348 ------~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
..+..+...... ..+.+|+||-|-++....-.+ .+...++++.+.+++..|..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 466899999999886532111 1112234455666666655554455566666543
No 355
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.72 E-value=0.0084 Score=71.80 Aligned_cols=117 Identities=25% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechhhHHH-HH---hhh------------hhhHHHHHHHHHH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFVE-LF---VGV------------GASRVRDLFEKAK 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s~~~~-~~---~G~------------~~~~vr~lF~~A~ 358 (723)
|....+-++|+||||||||+|+..++.. .|.+.++++..+-.. .+ .|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 3444556899999999999999765443 366777777544222 00 111 1111111222234
Q ss_pred cCCCeEEEEcCccchhhhcCC-CCCCCC--hHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 359 SKAPCIVFIDEIDAVGRQRGA-GLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~-~~~~~~--~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
...+.+|+||-+.++.++..- +..+.. ....+.++++|..|..+-...++.+|.+-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467899999999999853211 111111 12234446666666666555666666653
No 356
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.72 E-value=0.0042 Score=62.80 Aligned_cols=108 Identities=30% Similarity=0.413 Sum_probs=56.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCc--eeeechh-----hHHHHH---hhh----------hhhHHHHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVP--FFSCAAS-----EFVELF---VGV----------GASRVRDLFEKAK 358 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p--~i~is~s-----~~~~~~---~G~----------~~~~vr~lF~~A~ 358 (723)
|+-++|.||+|+|||+.+-.+|..+ +.. ++..+.. +....| .|. ....+++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999888887654 333 3333321 111111 111 1123445555555
Q ss_pred cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 359 SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
...-.+|+||=..... .+.....-+..++..+ ....-.+|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 5445799998753321 1122223333444444 3344456677766655554
No 357
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.72 E-value=0.0013 Score=70.83 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=47.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeech-hhHH-------HHHhhhhhhHHHHHHHHHHcCCCeEEEEc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAA-SEFV-------ELFVGVGASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~-s~~~-------~~~~G~~~~~vr~lF~~A~~~aP~ILfID 368 (723)
.++++++||+|+|||++++++.+.. +..++.+.. .++. ............+++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3579999999999999999999875 223333321 1111 00011122256788889999999999999
Q ss_pred Ccc
Q 004921 369 EID 371 (723)
Q Consensus 369 EiD 371 (723)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 358
>PRK14531 adenylate kinase; Provisional
Probab=96.71 E-value=0.0015 Score=64.97 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=27.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+-++++||||+|||++++.+|...|++.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3589999999999999999999999877654
No 359
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.0036 Score=63.88 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=45.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc--------CCceeeech-hhHHHHHhh-------------hhhhHHHHHHHHHHcCC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA--------GVPFFSCAA-SEFVELFVG-------------VGASRVRDLFEKAKSKA 361 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~--------~~p~i~is~-s~~~~~~~G-------------~~~~~vr~lF~~A~~~a 361 (723)
+.|+.||||||||++.|-+|+-+ +..+..++- ++......| ...-+-..+....+.++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 48999999999999999998854 223333432 222221111 12223345666778899
Q ss_pred CeEEEEcCccch
Q 004921 362 PCIVFIDEIDAV 373 (723)
Q Consensus 362 P~ILfIDEiD~l 373 (723)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999543
No 360
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.71 E-value=0.0014 Score=61.91 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=28.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 361
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.70 E-value=0.0017 Score=64.08 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=31.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
+-++|.|+||+|||++|+.++...+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 45899999999999999999999988887766555543
No 362
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.70 E-value=0.0073 Score=65.28 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh-H-----HHHH--hhhhh-------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE-F-----VELF--VGVGA------------- 347 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~-~-----~~~~--~G~~~------------- 347 (723)
|+....-++++||||+|||+++-.+|-.+ +...++++..+ | .+.. .|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 44555668999999999999999887653 23677777644 1 1100 01000
Q ss_pred ------hHHHHHHHHHHcC--CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 348 ------SRVRDLFEKAKSK--APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 348 ------~~vr~lF~~A~~~--aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
..+..+.+..... .+.+|+||-+-.+....-.+ .+....+++.+++++..|..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~-~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG-RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0112222333333 36799999998875432111 111223445566666655555445556666553
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.68 E-value=0.0088 Score=59.73 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred eEEeCCCCCcHHHHHHHHHH-----hcCCcee--------------eechhhHHHHHhhhhh---hHHHHHHHHHHcCCC
Q 004921 305 CLLVGPPGTGKTLLARAVAG-----EAGVPFF--------------SCAASEFVELFVGVGA---SRVRDLFEKAKSKAP 362 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~-----e~~~p~i--------------~is~s~~~~~~~G~~~---~~vr~lF~~A~~~aP 362 (723)
++|+||.|+|||++.|.++- .+|.++. .+...+......+... .++..++..+ ..|
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~--~~~ 79 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA--TEN 79 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC--CCC
Confidence 68999999999999999973 3343221 1111121111111111 2233333322 468
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
.++++||...-. +..........++..+.. ..+..+|.+|+..+
T Consensus 80 ~llllDEp~~g~---------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 80 SLVLLDELGRGT---------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred eEEEEecCCCCC---------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 999999985421 112233444555555432 12345777788765
No 364
>PLN02674 adenylate kinase
Probab=96.68 E-value=0.0056 Score=63.92 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=30.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
+..++|.||||+|||++++.||...+++.+ +..+++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 456999999999999999999999986555 44455543
No 365
>PRK06217 hypothetical protein; Validated
Probab=96.68 E-value=0.0016 Score=64.85 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
-|+|.|+||+|||+++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999987765
No 366
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.68 E-value=0.0046 Score=67.74 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh------HHHHH--hhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGVG-------------- 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~------~~~~~--~G~~-------------- 346 (723)
|+....-..|+||||||||.|+..+|-.. +...++++... +.+.. .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 34444557899999999999999886432 24566666533 11110 0100
Q ss_pred -----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 347 -----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 347 -----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
...+..+-.......+.+|+||-|-++.+..-.+ .+...++++.+++++..|..+....++.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0111222222334568899999999886542111 11223455667777776655544555555554
No 367
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.68 E-value=0.0083 Score=61.68 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~ 335 (723)
|......++++||||+|||+++..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4555567999999999999999987643 2556666664
No 368
>PHA02774 E1; Provisional
Probab=96.67 E-value=0.005 Score=70.88 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=26.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceee-ec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS-CA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~-is 334 (723)
++++|+||||||||++|-+|++.++..++. +|
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 489999999999999999999998654433 44
No 369
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.017 Score=65.45 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 357889999999999999999998765 5555555543
No 370
>PRK04328 hypothetical protein; Provisional
Probab=96.64 E-value=0.017 Score=60.62 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=28.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh---cCCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~ 335 (723)
|.+....+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4555567999999999999999876543 3667777765
No 371
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.64 E-value=0.0017 Score=62.18 Aligned_cols=28 Identities=32% Similarity=0.717 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
++|+|+||+|||++|+.++...+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998877654
No 372
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0085 Score=60.26 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=21.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~ 326 (723)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 373
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.62 E-value=0.0017 Score=64.58 Aligned_cols=30 Identities=43% Similarity=0.753 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
|+|+||||+|||++|+.||...+++++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 799999999999999999999988776543
No 374
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.61 E-value=0.007 Score=58.33 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=29.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~ 340 (723)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66677777655543
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.60 E-value=0.0022 Score=66.44 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.|.-++|.||||+|||++|+.+|+.++++++.+.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3455999999999999999999999998887765
No 376
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.59 E-value=0.0033 Score=63.68 Aligned_cols=129 Identities=24% Similarity=0.354 Sum_probs=60.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH-HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCC
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGG 383 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~-~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~ 383 (723)
++|+||+|||||.+|-++|+..|.|++..+.-..... .+|.+.....+ + ...+ =+++||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l----~~~~-RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-L----KGTR-RIYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-G----TT-E-EEES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-H----cccc-eeeecccccc---------C
Confidence 6899999999999999999999999999886554432 23322111100 1 1112 3777764322 1
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccC---CCCcc-cccccCCCCHHHHHHHHHH
Q 004921 384 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLR---PGRFD-RQVTVDRPDVAGRVKILQV 450 (723)
Q Consensus 384 ~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlr---pgRfd-~~I~v~~Pd~~~R~~Il~~ 450 (723)
+.-...+....|+..++......++|+=+-+.. .|..-..+ ...|. .+..++.||.+.-..-.+.
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~ 137 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKR 137 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHH
Confidence 223345567777888888877666666665442 11100111 01222 2445677887765443333
No 377
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.016 Score=63.92 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc--CCceeeechhhHHHHH------hh--------hhhhHHHHHHHHHHcCCCe
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA--GVPFFSCAASEFVELF------VG--------VGASRVRDLFEKAKSKAPC 363 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~--~~p~i~is~s~~~~~~------~G--------~~~~~vr~lF~~A~~~aP~ 363 (723)
-+..-+||-|.||.|||+|.-.++..+ ..+++|+++.+-.... .| ..+.++.++.+......|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 333458899999999999887776654 3389999987654322 12 1245577888899999999
Q ss_pred EEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 364 ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
+++||-|..+....-.+..++-.......++|.+.
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999997654333233333444445555543
No 378
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.58 E-value=0.015 Score=57.76 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=56.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCC-------------ceeeechhhHHHHHh-h-----------hhhhHHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGV-------------PFFSCAASEFVELFV-G-----------VGASRVRDLFEKAK 358 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~-------------p~i~is~s~~~~~~~-G-----------~~~~~vr~lF~~A~ 358 (723)
-+.|.||+|+|||+|.+++....|- ++.++.-.++.+.+- + .+..+.+-.+..+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral 102 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASEL 102 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHH
Confidence 4789999999999999999743321 122222112222110 0 01123444566666
Q ss_pred cCC--CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 359 SKA--PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 359 ~~a--P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
... |.++++||-..-. +....+.+.+++..+. . .+..||.+|+.++.
T Consensus 103 ~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~ 151 (176)
T cd03238 103 FSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV 151 (176)
T ss_pred hhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH
Confidence 677 9999999974422 2233344444444432 1 24467777777653
No 379
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.57 E-value=0.0018 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
++|.||||+|||++|+.+++.++.+++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 47899999999999999999998776543
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.023 Score=63.67 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=58.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHHH-------HH---hhh---hhhHHHHHHHHHHcCCCeE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVE-------LF---VGV---GASRVRDLFEKAKSKAPCI 364 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~~-------~~---~G~---~~~~vr~lF~~A~~~aP~I 364 (723)
+.-++|.||+|+|||+++..+|... |..+..+++..+.. .| .|. ....+..+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999998754 43444444433221 11 111 1122334444444445578
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC---CCCCceEEEEeeCCCCCCCccc
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF---SGNSGVIVLAATNRPDVLDSAL 424 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~---~~~~~ViVIaaTN~p~~LD~aL 424 (723)
|+||=..... .+ ...+..|...++.. .....++|+.+|...+.+....
T Consensus 303 VLIDTaGr~~---------rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 303 ILIDTAGYSH---------RN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEeCCCCCc---------cC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 8888532211 01 12333343333322 2234567777777665544433
No 381
>PTZ00035 Rad51 protein; Provisional
Probab=96.56 E-value=0.0097 Score=65.23 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=64.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh------HHHHHh--hh---------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELFV--GV--------------- 345 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~------~~~~~~--G~--------------- 345 (723)
|+....-+.|+||||+|||.|+..++..+ +...++++... +..... +.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 44555568899999999999999987543 23455665432 111100 00
Q ss_pred ----hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 346 ----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 346 ----~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
....+..+........+.+|+||-|-++.+..-.+ .+...++++.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 00111122222234567899999999986532111 11223455667777776665544555666544
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.55 E-value=0.012 Score=59.31 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.0
Q ss_pred ceEEeCCCCCcHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVA 323 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA 323 (723)
-++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999988
No 383
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.55 E-value=0.0087 Score=62.18 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=18.1
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~ 324 (723)
.+|+||||+|||+|+..+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999998875
No 384
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.54 E-value=0.031 Score=58.21 Aligned_cols=132 Identities=11% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCC---ceeeechh--hHHHHH-----hhh---------h----hhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGV---PFFSCAAS--EFVELF-----VGV---------G----ASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~---p~i~is~s--~~~~~~-----~G~---------~----~~~vr~lF~~A 357 (723)
.|-.+++.|++|||||++++.+.....- +++.+... .....| +.. . ...+.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446899999999999999998775532 22222110 100000 000 0 01111222212
Q ss_pred Hc---CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccc
Q 004921 358 KS---KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (723)
Q Consensus 358 ~~---~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I 434 (723)
.. ..+++|++|++.. .....+.+.+++. ....-++-+|..+...-.|++.++. -.+.++
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~----~gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFN----NGRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHh----cccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 2368999999732 1122334555554 2334457778888888889999876 677777
Q ss_pred ccCCCCHHHHHHHHHHH
Q 004921 435 TVDRPDVAGRVKILQVH 451 (723)
Q Consensus 435 ~v~~Pd~~~R~~Il~~~ 451 (723)
-+. -+..+..-|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 664 4555555555443
No 385
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.002 Score=62.27 Aligned_cols=28 Identities=39% Similarity=0.643 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+-+.||||||||++|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999986
No 386
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.51 E-value=0.0082 Score=60.69 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~ 324 (723)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3489999999999999999983
No 387
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.51 E-value=0.0026 Score=69.48 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=47.6
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeech-hhHH-----------HHH--hhhhhhHHHHHHHHHHcCCCeE
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFV-----------ELF--VGVGASRVRDLFEKAKSKAPCI 364 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~-s~~~-----------~~~--~G~~~~~vr~lF~~A~~~aP~I 364 (723)
..+++|++||+|+|||++++++.....- .++.+-- .++. ..- .|...-...++++.+.+..|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3568999999999999999999986632 2222210 1111 000 1122234678889999999999
Q ss_pred EEEcCcc
Q 004921 365 VFIDEID 371 (723)
Q Consensus 365 LfIDEiD 371 (723)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 388
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.48 E-value=0.014 Score=55.94 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=54.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechh---hHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS---EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s---~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
...+.|.||+|+|||+|++++++.... --+.++.. .+...+.+ + .+-+-.+..+....|.++++||-..=.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G-~~~rv~laral~~~p~illlDEP~~~L-- 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-G-EKMRLALAKLLLENPNLLLLDEPTNHL-- 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-H-HHHHHHHHHHHhcCCCEEEEeCCccCC--
Confidence 345889999999999999999996521 00111110 00000111 1 223334566666789999999965421
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
+......+..++..+ . ..+|.+|+.++.
T Consensus 102 --------D~~~~~~l~~~l~~~---~----~til~~th~~~~ 129 (144)
T cd03221 102 --------DLESIEALEEALKEY---P----GTVILVSHDRYF 129 (144)
T ss_pred --------CHHHHHHHHHHHHHc---C----CEEEEEECCHHH
Confidence 223333444445443 1 256667776543
No 389
>PRK06547 hypothetical protein; Provisional
Probab=96.48 E-value=0.0029 Score=62.67 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
..+.-+++.|++|+|||++|+.+++..+++++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567899999999999999999999998877654
No 390
>PRK14530 adenylate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=65.23 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=27.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.++|.||||+|||++++.||+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999877754
No 391
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.47 E-value=0.0028 Score=62.57 Aligned_cols=34 Identities=29% Similarity=0.638 Sum_probs=30.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
++.++|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999988764
No 392
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.47 E-value=0.009 Score=64.90 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=62.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc------C---Cceeeechhh------HHHHH--hhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA------G---VPFFSCAASE------FVELF--VGVG-------------- 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~------~---~p~i~is~s~------~~~~~--~G~~-------------- 346 (723)
|+....-+.++||||+|||+|+..++..+ | ...++++..+ +.... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 44445568899999999999999887632 1 2456666543 11100 0000
Q ss_pred -----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 347 -----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 347 -----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
...+..+........+.+|+||-|-++....-.+. +....++..+.+++..|..+....++.|+.+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 01112222222345688999999998865321111 1112334456667766665544555555554
No 393
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.027 Score=62.49 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=57.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH----H---HH---------hhhhhhHHHHHHHHHHc-CC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----E---LF---------VGVGASRVRDLFEKAKS-KA 361 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~----~---~~---------~G~~~~~vr~lF~~A~~-~a 361 (723)
|+-++|.||+|+|||+++..||..+ +..+..+++..+. + .| .......+.+.+..++. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5779999999999999999998765 3344444442221 1 11 01233445555555543 23
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
-.+||||-..... .....+.+|...++.......++|+.+|...
T Consensus 321 ~DvVLIDTaGRs~------------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 321 VDYILIDTAGKNY------------RASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred CCEEEEeCccccC------------cCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 4689998764431 1123455555555443433345555554443
No 394
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.46 E-value=0.003 Score=64.14 Aligned_cols=23 Identities=52% Similarity=0.624 Sum_probs=18.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.+.||+|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999988654
No 395
>PTZ00202 tuzin; Provisional
Probab=96.46 E-value=0.21 Score=56.17 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=49.0
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
-...+.+|.+....+|.+++.... ...|+-+.|+||+|||||++++.+....+.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 356788999988888887775422 23456789999999999999999999999887777754
No 396
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.46 E-value=0.0086 Score=64.86 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=31.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++..++|+|+||||||++++.+|..+|.+|+.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45668999999999999999999999999999544
No 397
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.45 E-value=0.0037 Score=67.92 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=46.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeec-hhhHHHH------HhhhhhhHHHHHHHHHHcCCCeEEEEcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCA-ASEFVEL------FVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is-~s~~~~~------~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (723)
.+++|++|++|+|||+++++++... +..++.+- ..++.-. +.....-...+++..+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3579999999999999999998875 22333322 1121100 0111223467788888899999999999
Q ss_pred c
Q 004921 370 I 370 (723)
Q Consensus 370 i 370 (723)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 398
>PHA02624 large T antigen; Provisional
Probab=96.45 E-value=0.0043 Score=71.69 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhh-cC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ-RG 378 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~-r~ 378 (723)
+..+.++|+||||||||+++.+|++.++...+.++++.-... |...-....-+.+||++-.-.-. ..
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccccc
Confidence 334589999999999999999999999666777775432211 11111111248888887543221 10
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCC-------CCc--e---EEEEeeCCCCCCCccccCCCCcccccccCC
Q 004921 379 AGLGGGNDEREQTINQLLTEMDGFSG-------NSG--V---IVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 379 ~~~~~~~~~~~~~ln~LL~~ld~~~~-------~~~--V---iVIaaTN~p~~LD~aLlrpgRfd~~I~v~~ 438 (723)
-..+.+-+ -+..|-..+||... .+. + -.|.|||. ..|+..+.- ||.+++.|..
T Consensus 497 Lp~G~~~d----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMN----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CCcccccc----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00011110 12445566776511 111 1 23556663 467777776 8988888843
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.44 E-value=0.022 Score=65.59 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHh----cCCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e----~~~p~i~is~s 336 (723)
|....+.+|+.||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4556678999999999999999987432 26787777754
No 400
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.44 E-value=0.003 Score=61.89 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=28.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.++|.|++|+|||++++.+|..+|.|++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998665
No 401
>PRK13764 ATPase; Provisional
Probab=96.42 E-value=0.0039 Score=72.84 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=41.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC---Cceeeec-hhhHH-----HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCA-ASEFV-----ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is-~s~~~-----~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
.+++|++||||+|||+++++++..+. ..+..+. ..++. ..+.. .........+.+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998763 2232221 11111 11100 001122333334567899999999843
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.41 E-value=0.018 Score=66.32 Aligned_cols=78 Identities=24% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHh------hh----------------------h
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFV------GV----------------------G 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~------G~----------------------~ 346 (723)
|......+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 44555569999999999999999887754 66777777644322111 10 0
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCccchhh
Q 004921 347 ASRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 347 ~~~vr~lF~~A~~~aP~ILfIDEiD~l~~ 375 (723)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23445556666677899999999988753
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.41 E-value=0.0088 Score=59.49 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=55.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhh---H-HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE---F-VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~---~-~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~ 376 (723)
.-+.|.||.|+|||+|.+.+++.... =-+.++... . ...... +..+-+-.+..+....|.++++||-..-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEPts~L-- 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEPSAYL-- 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECCcccC--
Confidence 34789999999999999999986421 001111100 0 000011 11234445666667789999999974422
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
+......+..++..+. ...+..+|.+|+..+.
T Consensus 103 --------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 103 --------DIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred --------CHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 2233334444444432 1222356667776543
No 404
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.39 E-value=0.0035 Score=68.10 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=46.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeec-hhhHH---HH---HhhhhhhHHHHHHHHHHcCCCeEEEEcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCA-ASEFV---EL---FVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is-~s~~~---~~---~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (723)
.+++++.|++|+|||+++++++.+. ...++.+. ..++. .. +.....-...+++..+.+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3579999999999999999999863 12222221 11111 00 0111123467888999999999999999
Q ss_pred cc
Q 004921 370 ID 371 (723)
Q Consensus 370 iD 371 (723)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 405
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.38 E-value=0.011 Score=64.69 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh------HHHHH--hhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGVG-------------- 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~------~~~~~--~G~~-------------- 346 (723)
|+....-++++|+||+|||.++..+|-.+ +.+.++++..+ +.+.. .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34444557899999999999999877432 23577777644 11110 0000
Q ss_pred -h----hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 347 -A----SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 347 -~----~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
. ..+..+........+.+|+||-|-++.+....+ .+....+++.+.+++..|..+....++.||.+.
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 0 111122222344568899999999987542111 111234455677777777666555566666553
No 406
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.36 E-value=0.003 Score=69.29 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeech-hhHHH------------HHhhhhhhHHHHHHHHHHcCCCe
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFVE------------LFVGVGASRVRDLFEKAKSKAPC 363 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~-s~~~~------------~~~G~~~~~vr~lF~~A~~~aP~ 363 (723)
.+..+++|+.||+|+|||++++++++.... .++.+.. .++.- ...+...-...+++..+.+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 344568999999999999999999987632 2222111 11100 00112223466788889999999
Q ss_pred EEEEcCcc
Q 004921 364 IVFIDEID 371 (723)
Q Consensus 364 ILfIDEiD 371 (723)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999983
No 407
>PRK14526 adenylate kinase; Provisional
Probab=96.36 E-value=0.0096 Score=60.92 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
++|.||||+|||++++.+|+..+.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 408
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.36 E-value=0.014 Score=60.08 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
-|..+.+|-...|.+||+||=.+ +-+......+++|+..+..- -+..+|..|+..+
T Consensus 152 KRvaLARAialdPell~~DEPts----------GLDPI~a~~~~~LI~~L~~~---lg~T~i~VTHDl~ 207 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTS----------GLDPISAGVIDELIRELNDA---LGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCC----------CCCcchHHHHHHHHHHHHHh---hCCEEEEEECChH
Confidence 35567777778899999999432 23344556777777776532 3345666677654
No 409
>PRK02496 adk adenylate kinase; Provisional
Probab=96.35 E-value=0.0031 Score=62.62 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=26.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+++.||||+|||++++.||..++.+.+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~ 33 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTG 33 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhH
Confidence 899999999999999999999998776543
No 410
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.35 E-value=0.022 Score=60.47 Aligned_cols=139 Identities=19% Similarity=0.308 Sum_probs=83.8
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHhcC----Cceee
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEAG----VPFFS 332 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~g-vLL~GPpGtGKT~LAralA~e~~----~p~i~ 332 (723)
+..++..-.+|+++.-.+-+.+ + + ..|+| ||++||.|+|||+..-++-.+.+ .+++.
T Consensus 98 lR~Ip~~i~~~e~LglP~i~~~-~---~--------------~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlT 159 (353)
T COG2805 98 LRLIPSKIPTLEELGLPPIVRE-L---A--------------ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILT 159 (353)
T ss_pred EeccCccCCCHHHcCCCHHHHH-H---H--------------hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEE
Confidence 3345555567887755443332 2 1 22455 68899999999998888877664 33333
Q ss_pred ec---------hhhH-HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC
Q 004921 333 CA---------ASEF-VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF 402 (723)
Q Consensus 333 is---------~s~~-~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~ 402 (723)
+- -..+ ..+-+|..-....+.++.|.+..|+||++-|+-.. .++..-|..-
T Consensus 160 IEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~----------------ETi~~ALtAA--- 220 (353)
T COG2805 160 IEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDL----------------ETIRLALTAA--- 220 (353)
T ss_pred ecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccH----------------HHHHHHHHHH---
Confidence 32 1122 22345555555666777788889999999998443 3555555543
Q ss_pred CCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHH
Q 004921 403 SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVA 442 (723)
Q Consensus 403 ~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~ 442 (723)
..|-+|++|-+-.+ |... +||.|.+-++..+
T Consensus 221 --ETGHLV~~TLHT~s----A~~t---i~RiidvFp~~ek 251 (353)
T COG2805 221 --ETGHLVFGTLHTNS----AAKT---IDRIIDVFPAEEK 251 (353)
T ss_pred --hcCCEEEEeccccc----HHHH---HHHHHHhCChhhh
Confidence 34567888754322 2322 5566777666554
No 411
>PRK14528 adenylate kinase; Provisional
Probab=96.34 E-value=0.0034 Score=62.80 Aligned_cols=31 Identities=29% Similarity=0.616 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.+++.||||+|||++++.++...+.+.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~ 33 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTG 33 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCC
Confidence 4899999999999999999999998876643
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33 E-value=0.0082 Score=63.55 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=55.7
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCc-ceEEeCCCCCcHHHHHHHHHHhcC---Cceeeech-hhHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAA-SEFVE 340 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~-gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~-s~~~~ 340 (723)
.+++++.-.++..+.|++++. . ++ .+++.||+|+|||++++++..+.. ..++.+.. .++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~-----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K-----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 457776544454444443332 1 23 389999999999999999977653 23444321 11110
Q ss_pred -----HHh-hhhhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 341 -----LFV-GVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 341 -----~~~-G~~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
..+ ........++...+.+..|++|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 000 11112356677778888999999999943
No 413
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.013 Score=57.79 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=57.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechh--------hHHHH----------Hh-------hhhhhHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS--------EFVEL----------FV-------GVGASRVRDLFEK 356 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s--------~~~~~----------~~-------G~~~~~vr~lF~~ 356 (723)
-+.|.||+|+|||+|.+.+++.... --+.++.. .+... +. =.+..+-|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 4889999999999999999986411 00111110 01000 00 0112234445666
Q ss_pred HHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 357 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 357 A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
|....|.++++||--.-. +......+.+++..+. . .+..+|.+|+..+.
T Consensus 110 al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~ 158 (173)
T cd03246 110 ALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALK---A-AGATRIVIAHRPET 158 (173)
T ss_pred HHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH
Confidence 677889999999964322 3334445555555543 1 23456677776543
No 414
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0052 Score=63.22 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
.|.-|.+.|++|+|||++|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35568999999999999999999988 7788887766664
No 415
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.30 E-value=0.0045 Score=66.96 Aligned_cols=73 Identities=21% Similarity=0.372 Sum_probs=47.4
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeech-hhHH--H-----HH-----hhhhhhHHHHHHHHHHcCCCe
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFV--E-----LF-----VGVGASRVRDLFEKAKSKAPC 363 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~-s~~~--~-----~~-----~G~~~~~vr~lF~~A~~~aP~ 363 (723)
.+....+++.||+|+|||++++++++.... ..+.+.. .++. . .. .+...-.+.+++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 344568999999999999999999986621 1222210 0110 0 00 011123456788888889999
Q ss_pred EEEEcCcc
Q 004921 364 IVFIDEID 371 (723)
Q Consensus 364 ILfIDEiD 371 (723)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999984
No 416
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0058 Score=66.85 Aligned_cols=26 Identities=54% Similarity=0.866 Sum_probs=22.1
Q ss_pred CCCCcc--eEEeCCCCCcHHHHHHHHHH
Q 004921 299 AKIPKG--CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 299 ~~~p~g--vLL~GPpGtGKT~LAralA~ 324 (723)
....+| +-|.||+||||||+.|.||+
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344555 67999999999999999998
No 417
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.30 E-value=0.0036 Score=61.86 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
-+++.||||+|||++++.++..+|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999999866544
No 418
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.28 E-value=0.011 Score=64.50 Aligned_cols=70 Identities=29% Similarity=0.277 Sum_probs=46.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh-h-----------hhhHHHHHHHHHHcCCCeEEEEcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG-V-----------GASRVRDLFEKAKSKAPCIVFIDE 369 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G-~-----------~~~~vr~lF~~A~~~aP~ILfIDE 369 (723)
.+.++|.|+||+|||+|++.+++..+.+++.-.+.++.....+ . ....... ...+...++.+||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC
Confidence 3469999999999999999999999999877666655543321 0 0111112 2333345667999995
Q ss_pred ccch
Q 004921 370 IDAV 373 (723)
Q Consensus 370 iD~l 373 (723)
+.+
T Consensus 241 -~~~ 243 (325)
T TIGR01526 241 -DFI 243 (325)
T ss_pred -ChH
Confidence 444
No 419
>PRK14527 adenylate kinase; Provisional
Probab=96.27 E-value=0.004 Score=62.39 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=28.7
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+.|.-+++.||||+|||++|+.+|...+.+.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3456699999999999999999999998766554
No 420
>PRK13695 putative NTPase; Provisional
Probab=96.27 E-value=0.02 Score=56.30 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~ 326 (723)
++|+|++|+|||++++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 421
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.26 E-value=0.021 Score=55.94 Aligned_cols=100 Identities=31% Similarity=0.465 Sum_probs=56.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC-----------ceeeechh------hHHHHH----hh--hhhhHHHHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV-----------PFFSCAAS------EFVELF----VG--VGASRVRDLFEKAK 358 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~-----------p~i~is~s------~~~~~~----~G--~~~~~vr~lF~~A~ 358 (723)
..-+.|.||+|+|||+|++.+++.... .+.++.-. ...+.. .. .+..+-|-.+..|.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999986420 01111100 011111 00 11223444566666
Q ss_pred cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 359 SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
...|.++++||-..-. +......+.+++..+ +..+|.+|++++
T Consensus 107 ~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 7889999999975432 223344455555543 135666777654
No 422
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.26 E-value=0.0061 Score=67.52 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=45.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC-----Cceeeechh-hHH-----------HHHhhhhhhHHHHHHHHHHcCCCeEEE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG-----VPFFSCAAS-EFV-----------ELFVGVGASRVRDLFEKAKSKAPCIVF 366 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~-----~p~i~is~s-~~~-----------~~~~G~~~~~vr~lF~~A~~~aP~ILf 366 (723)
.+|++||+|+|||++++++..+.. ..++.+.-. ++. ..-+|.......+....+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 479999999999999999987662 334443211 211 111222222455667778888999999
Q ss_pred EcCcc
Q 004921 367 IDEID 371 (723)
Q Consensus 367 IDEiD 371 (723)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 423
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.25 E-value=0.017 Score=71.35 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=96.3
Q ss_pred CCCcceEEeCCCCCcHHHHH-HHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHc--------------CCCeE
Q 004921 300 KIPKGCLLVGPPGTGKTLLA-RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS--------------KAPCI 364 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LA-ralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~--------------~aP~I 364 (723)
..-|+++++||||+|||++. -++-.+.-..++++|.+.... +...++-+-+.... -.--|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 34579999999999999965 577778888888877653211 11122111111100 01149
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHHHH---hhcCCCC--------CCceEEEEeeCCCCCCC-----ccccCCC
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLT---EMDGFSG--------NSGVIVLAATNRPDVLD-----SALLRPG 428 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~---~ld~~~~--------~~~ViVIaaTN~p~~LD-----~aLlrpg 428 (723)
||.|||. +...+. +..+.+--+|. +-+|+.. -.++++.+++|.+.... ..++|.
T Consensus 1567 LFcDeIn-Lp~~~~--------y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~- 1636 (3164)
T COG5245 1567 LFCDEIN-LPYGFE--------YYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK- 1636 (3164)
T ss_pred EEeeccC-Cccccc--------cCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC-
Confidence 9999998 432211 11112211221 1123322 35789999999876532 344431
Q ss_pred CcccccccCCCCHHHHHHHHHHHhcCCCCCc-c------------ccH--------HHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 429 RFDRQVTVDRPDVAGRVKILQVHSRGKALAK-D------------VDF--------EKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 429 Rfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~-d------------~dl--------~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
...+++..|.......|...++.+.-+-. + +.+ ....+..-||+|+||-..++...-
T Consensus 1637 --~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1637 --PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred --ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 23577888999888888887765432211 1 011 111122347999999988875543
Q ss_pred H
Q 004921 488 L 488 (723)
Q Consensus 488 ~ 488 (723)
.
T Consensus 1715 y 1715 (3164)
T COG5245 1715 Y 1715 (3164)
T ss_pred H
Confidence 3
No 424
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.25 E-value=0.0038 Score=63.52 Aligned_cols=29 Identities=41% Similarity=0.788 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+++.||||+|||++|+.||...|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776654
No 425
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.11 Score=53.96 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=99.0
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeech--hhHHHHHhhh--hhhHHH---HHHHHHHcC---CCeEE--E
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA--SEFVELFVGV--GASRVR---DLFEKAKSK---APCIV--F 366 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~--s~~~~~~~G~--~~~~vr---~lF~~A~~~---aP~IL--f 366 (723)
...|.-+||=|+||+|||++|.-+|.++|++-+.-.. .+++-...+. ....-. +.++..+.. .| || |
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p-iiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP-IIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc-hhhhH
Confidence 4557789999999999999999999999987654321 1222222220 011111 222222211 11 11 2
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHH
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVK 446 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~ 446 (723)
.|.+..+.. -.+.++..-++ ....+++=+.-=-|..+++..+. --...+.+-.+|.+.-+.
T Consensus 165 ~dqa~~V~~-----------GI~~VI~RAi~------eG~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 165 EDQASAVMV-----------GIEAVIERAIE------EGEDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADEELHRE 225 (299)
T ss_pred HHHhHHHHH-----------HHHHHHHHHHh------cCcceEEEeeeeccccccHhhhc--cceEEEEEEeCCHHHHHH
Confidence 232222211 11222222222 12233443443447778777762 223455666688876665
Q ss_pred HHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 447 ILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 447 Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
-|....+...... .....++.. .+++.+-......|...+-..|+.+|+.+++++++.
T Consensus 226 RF~~R~~~t~~~r--p~~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 226 RFYDRIRYTHASR--PGGRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRILE 283 (299)
T ss_pred HHHHHHHHHhccC--chhHHHHHH-----HHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHH
Confidence 5543332221111 112233322 367777777777888888899999999999998764
No 426
>PRK04040 adenylate kinase; Provisional
Probab=96.22 E-value=0.0042 Score=62.41 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc--CCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA--GVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~--~~p~i~i 333 (723)
|+-++++|+||||||++++.++..+ +.+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 5568999999999999999999998 6665443
No 427
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.22 E-value=0.0098 Score=59.16 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=40.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc-------------CCceeeechhh----HHHHHhh--h--------------------
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA-------------GVPFFSCAASE----FVELFVG--V-------------------- 345 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~-------------~~p~i~is~s~----~~~~~~G--~-------------------- 345 (723)
++|+||||+|||+++..++... +.++++++... +...+.. .
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 7999999999999999887643 23666665421 2111100 0
Q ss_pred ----------hhhHHHHHHHHHHc-CCCeEEEEcCccchhhh
Q 004921 346 ----------GASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 346 ----------~~~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~ 376 (723)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555666 57899999999999754
No 428
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.21 E-value=0.03 Score=56.77 Aligned_cols=126 Identities=26% Similarity=0.345 Sum_probs=74.9
Q ss_pred cCchhhhhhCCCCC--cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh----hHHHH------------------
Q 004921 289 KNPDKYTALGAKIP--KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS----EFVEL------------------ 341 (723)
Q Consensus 289 ~~~~~~~~~g~~~p--~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s----~~~~~------------------ 341 (723)
.+.+.-+++|.-.| .=+++.|+.|||||.|.+.++--. +....+++.. +|...
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 34455556655444 458899999999999999987522 3333333321 11100
Q ss_pred ----------H-hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEE
Q 004921 342 ----------F-VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIV 410 (723)
Q Consensus 342 ----------~-~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViV 410 (723)
| .......+..+.+.-+.....||+||-+..+.... ....+++++..+..+...+++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 01122334445555555566899999999886531 23456667777666665555544
Q ss_pred EEeeCCCCCCCccccC
Q 004921 411 LAATNRPDVLDSALLR 426 (723)
Q Consensus 411 IaaTN~p~~LD~aLlr 426 (723)
+ |-+|+.++++.+-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 4 4467888887765
No 429
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0063 Score=58.78 Aligned_cols=104 Identities=26% Similarity=0.380 Sum_probs=57.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCc--eeeechhhHH-------HHHhh-----hhhhHHHHHHHHHHcCCCeEEEEc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEFV-------ELFVG-----VGASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p--~i~is~s~~~-------~~~~G-----~~~~~vr~lF~~A~~~aP~ILfID 368 (723)
.-+.|.||+|+|||+|.+++++..... -+.++..... ....+ .+..+-+-.+..+-...|.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 458899999999999999999965321 1222221110 00011 011233334555666778999999
Q ss_pred CccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 369 EiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
|...=. +......+..++..+-. . +..++.+|+..+.+
T Consensus 106 Ep~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 106 EPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred CCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 986432 22333444455544421 2 23567777765543
No 430
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.19 E-value=0.037 Score=54.25 Aligned_cols=32 Identities=41% Similarity=0.393 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
++++||||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999988764 5666666654
No 431
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.011 Score=58.23 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=57.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCc--eeeechhhH--------HH----------HHh-------hhhhhHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVP--FFSCAASEF--------VE----------LFV-------GVGASRVRDLF 354 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p--~i~is~s~~--------~~----------~~~-------G~~~~~vr~lF 354 (723)
..-+.|.||+|+|||+|.+.+++..... -+.+++... .. .+. =.+..+-+-.+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 3458999999999999999999864210 011111110 00 000 00111223345
Q ss_pred HHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 355 EKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 355 ~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
..+-...|.+|++||--.- -+......+..++..+. . +..+|.+|+.++.+
T Consensus 108 a~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 108 ARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 5666678999999996432 12233445555555543 1 24677778876654
No 432
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.18 E-value=0.023 Score=56.64 Aligned_cols=34 Identities=38% Similarity=0.728 Sum_probs=26.2
Q ss_pred hhhhhCCCCCcc--eEEeCCCCCcHHHHHHHHHHhc
Q 004921 293 KYTALGAKIPKG--CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 293 ~~~~~g~~~p~g--vLL~GPpGtGKT~LAralA~e~ 326 (723)
.........++| ++|+||+|.|||++.|.|..+.
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 334445566665 7899999999999999998754
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0039 Score=61.07 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=26.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++++|.||||||++++.++ ++|.+.+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 9998888765
No 434
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.17 E-value=0.033 Score=59.05 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=59.8
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhH
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASR 349 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~ 349 (723)
+++-.+++.+-+-++...|..|. .+.||.|.+|+||++++|..|.-++..++.+..+.-. -..+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 56667778877888777776643 3689999999999999999999999988888754311 12223345
Q ss_pred HHHHHHHHH-cCCCeEEEEcCcc
Q 004921 350 VRDLFEKAK-SKAPCIVFIDEID 371 (723)
Q Consensus 350 vr~lF~~A~-~~aP~ILfIDEiD 371 (723)
++.++.+|- +..|.+++|+|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 777777665 4568888887743
No 435
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.17 E-value=0.027 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=18.3
Q ss_pred cceEEeCCCCCcHHH-HHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTL-LARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~-LAralA~e~ 326 (723)
+.+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 455554433
No 436
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.17 E-value=0.013 Score=62.77 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=29.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-CCceeeechhhHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVEL 341 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is~s~~~~~ 341 (723)
++-+++.|+||||||++|+.++..+ +.. .++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHHHHH
Confidence 3458999999999999999999998 544 4454455443
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.16 E-value=0.024 Score=55.98 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=58.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhhHH-------HH--H----------------hh--hhhhHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASEFV-------EL--F----------------VG--VGASRVRD 352 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~~~-------~~--~----------------~G--~~~~~vr~ 352 (723)
...+.|.||+|+|||+|++.+++.... --+.+++.+.. .. | .. .+..+-+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 345889999999999999999986421 01112211110 00 0 00 01123344
Q ss_pred HHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 353 LFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 353 lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.+..|-...|.++++||-..-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 108 ~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 5566666889999999975422 2334445555555543 1 24566677766543
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.16 E-value=0.0099 Score=62.38 Aligned_cols=28 Identities=43% Similarity=0.770 Sum_probs=22.6
Q ss_pred CCCCCcc--eEEeCCCCCcHHHHHHHHHHh
Q 004921 298 GAKIPKG--CLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 298 g~~~p~g--vLL~GPpGtGKT~LAralA~e 325 (723)
....|.| +.|.||.|||||+|.|++++-
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3444443 789999999999999999983
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.15 E-value=0.0048 Score=63.03 Aligned_cols=29 Identities=41% Similarity=0.785 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
++++||||+|||++++.||...+++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777664
No 440
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.014 Score=62.45 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc----C-Cceeeechhh
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA----G-VPFFSCAASE 337 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~----~-~p~i~is~s~ 337 (723)
.++.++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35679999999999999999988754 3 4555555543
No 441
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.048 Score=56.52 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=91.0
Q ss_pred CCCcceEEeCCCC-CcHHHHHHHHHHhcCC---------ceeeechhhHHHH-HhhhhhhHHHHHHHHHHc----CCCeE
Q 004921 300 KIPKGCLLVGPPG-TGKTLLARAVAGEAGV---------PFFSCAASEFVEL-FVGVGASRVRDLFEKAKS----KAPCI 364 (723)
Q Consensus 300 ~~p~gvLL~GPpG-tGKT~LAralA~e~~~---------p~i~is~s~~~~~-~~G~~~~~vr~lF~~A~~----~aP~I 364 (723)
+.....||.|..+ +||..++.-++..... .++.+....-... -..-+...+|++-+.+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3456799999998 9999998887775422 1222221100000 001133456665555432 34469
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHH
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR 444 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R 444 (723)
++|+++|.+. ....|.||..++. +..++++|..|+.++.|.|.+++ |+ ..+.++.|+...-
T Consensus 93 iII~~ae~mt--------------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELMN--------------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEEechHHhC--------------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 9999999984 3478999999984 56677888888889999999999 55 5788998988777
Q ss_pred HHHHHHHhcC
Q 004921 445 VKILQVHSRG 454 (723)
Q Consensus 445 ~~Il~~~l~~ 454 (723)
.+.....+..
T Consensus 154 ~e~~~~~~~p 163 (263)
T PRK06581 154 NELYSQFIQP 163 (263)
T ss_pred HHHHHHhccc
Confidence 7666655543
No 442
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.12 E-value=0.044 Score=63.47 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechh
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAAS 336 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s 336 (723)
|.....-+||+|+||+|||+|+..++.+. |-+.++++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 34445669999999999999999776432 6677777764
No 443
>PF13245 AAA_19: Part of AAA domain
Probab=96.11 E-value=0.0076 Score=51.41 Aligned_cols=31 Identities=42% Similarity=0.596 Sum_probs=21.2
Q ss_pred eEEeCCCCCcHH-HHHHHHHHhc------CCceeeech
Q 004921 305 CLLVGPPGTGKT-LLARAVAGEA------GVPFFSCAA 335 (723)
Q Consensus 305 vLL~GPpGtGKT-~LAralA~e~------~~p~i~is~ 335 (723)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 566999999999 5556665544 445666554
No 444
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.11 E-value=0.011 Score=65.17 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=21.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 445
>PRK14529 adenylate kinase; Provisional
Probab=96.11 E-value=0.013 Score=60.34 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
++|.||||+|||++++.|+..++.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987654
No 446
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.11 E-value=0.012 Score=56.55 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=27.8
Q ss_pred EeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHh
Q 004921 307 LVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (723)
Q Consensus 307 L~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~ 343 (723)
|.||||+|||++|+.||.+.|.+ .++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHHHH
Confidence 57999999999999999999764 556666665433
No 447
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.11 E-value=0.015 Score=69.48 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
+-|-.+.+|--..|.||++||.-+-. +.+.++.+.+-|.++.. +..+|..|+++..
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaL----------D~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t 670 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSAL----------DPETEAIILQNLLQILQ-----GRTVIIIAHRLST 670 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCccccc----------CHhHHHHHHHHHHHHhc-----CCeEEEEEccchH
Confidence 44455666667889999999975432 34555566666655542 2356777787654
No 448
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.10 E-value=0.012 Score=67.72 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHhcC---Cceeeechh-hHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEAG---VPFFSCAAS-EFV 339 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~g-vLL~GPpGtGKT~LAralA~e~~---~p~i~is~s-~~~ 339 (723)
..+++++.-.++..+.+++++. .|+| +|++||+|+|||++..++..+.. ..++.+... ++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4577887666666555555442 2445 68999999999999998877663 334443211 111
Q ss_pred HH-----Hhhh-hhhHHHHHHHHHHcCCCeEEEEcCcc
Q 004921 340 EL-----FVGV-GASRVRDLFEKAKSKAPCIVFIDEID 371 (723)
Q Consensus 340 ~~-----~~G~-~~~~vr~lF~~A~~~aP~ILfIDEiD 371 (723)
-. .+.. ...........+.+..|.+|++.|+-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 0110 01123455566677899999999994
No 449
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.09 E-value=0.012 Score=66.64 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcc-eEEeCCCCCcHHHHHHHHHHhcCCcee-eechhhHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKG-CLLVGPPGTGKTLLARAVAGEAGVPFF-SCAASEFVEL 341 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~g-vLL~GPpGtGKT~LAralA~e~~~p~i-~is~s~~~~~ 341 (723)
...+|++++......+.+.+++. .|.| +|++||.|+|||+..-++..+++-+.. .++..+=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45678888877777666655443 2555 678999999999999999988865444 2222222211
Q ss_pred H-hh-------h-hhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 342 F-VG-------V-GASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 342 ~-~G-------~-~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
. .| . ..-.....++...+..|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 0 00 0 001122344555568899999999943
No 450
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.08 E-value=0.062 Score=58.48 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
..|.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 346678999999999999999998865 444444443
No 451
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.08 E-value=0.015 Score=57.37 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFV 339 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~~ 339 (723)
..|.-++|.|+||+|||++++.+++.+. ...+.++...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 3456799999999999999999999875 234555554443
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.07 E-value=0.013 Score=65.58 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
..+.|.|.|++|||||+|+++||...|.+.+.--+.++.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 346799999999999999999999998886654444444
No 453
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.07 E-value=0.012 Score=62.11 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=65.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC---------Cceeeechhh-H--------HHHHhhhh------------------hh
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAASE-F--------VELFVGVG------------------AS 348 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~---------~p~i~is~s~-~--------~~~~~G~~------------------~~ 348 (723)
.=|+||||+|||-|+-.+|-.+- ...++++... | .+.+.-.. ..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 44999999999999998876542 3466666432 1 11110000 01
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
.+..+-.........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.||.|..-...++
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11122222223456899999999998643211 1223456778888887777776666666665443333333
No 454
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.06 E-value=0.015 Score=58.99 Aligned_cols=110 Identities=30% Similarity=0.491 Sum_probs=61.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhc
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 377 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r 377 (723)
|.+....++|.|+-|+|||++.+.|..+. +.-+.... ..+ +........ -|+.+||++.+.++
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~-------~~k---d~~~~l~~~--~iveldEl~~~~k~- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF-------DDK---DFLEQLQGK--WIVELDELDGLSKK- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC-------CCc---HHHHHHHHh--HheeHHHHhhcchh-
Confidence 44556678999999999999999996662 11111000 000 111111111 39999999998521
Q ss_pred CCCCCCCChHHHHHHHHHHHh-hcCCCC---------CCceEEEEeeCCCCCC-CccccCCCCcccccccC
Q 004921 378 GAGLGGGNDEREQTINQLLTE-MDGFSG---------NSGVIVLAATNRPDVL-DSALLRPGRFDRQVTVD 437 (723)
Q Consensus 378 ~~~~~~~~~~~~~~ln~LL~~-ld~~~~---------~~~ViVIaaTN~p~~L-D~aLlrpgRfd~~I~v~ 437 (723)
+ ...+..+++. .+.+.. ....++|+|||..+.| |+.--| || ..|.+.
T Consensus 111 ---------~-~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~ 168 (198)
T PF05272_consen 111 ---------D-VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVS 168 (198)
T ss_pred ---------h-HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence 1 2344455543 222211 1236889999998854 444445 66 344443
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.032 Score=57.55 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=56.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-h----cCCcee--------------eechhhHHHH---HhhhhhhHHHHHHHHHHcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG-E----AGVPFF--------------SCAASEFVEL---FVGVGASRVRDLFEKAKSK 360 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~-e----~~~p~i--------------~is~s~~~~~---~~G~~~~~vr~lF~~A~~~ 360 (723)
+-++|.||.|+|||++.+.++. . .|.+.. .+...+-... .......++..+++.+.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~-- 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT-- 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC--
Confidence 4589999999999999999987 2 232111 1111111110 11122345566666553
Q ss_pred CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.+++++|||+..=. ...+.......+++.+... .+..+|.+|+..+..
T Consensus 110 ~~sLvllDE~~~gT---------~~~d~~~i~~~il~~l~~~---~~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 SRSLVILDELGRGT---------STHDGIAIAYATLHYLLEE---KKCLVLFVTHYPSLG 157 (222)
T ss_pred CCeEEEEccCCCCC---------ChhhHHHHHHHHHHHHHhc---cCCeEEEEcccHHHH
Confidence 57899999984311 1112222234444444321 345678888887753
No 456
>PRK01184 hypothetical protein; Provisional
Probab=96.04 E-value=0.0056 Score=60.76 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
-++|+||||+|||++++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788999888765
No 457
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.04 E-value=0.015 Score=60.91 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=25.1
Q ss_pred hhCCCCCcc--eEEeCCCCCcHHHHHHHHHHhc
Q 004921 296 ALGAKIPKG--CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 296 ~~g~~~p~g--vLL~GPpGtGKT~LAralA~e~ 326 (723)
.+...+|+| +.+.||.|.|||++.|.+.+-.
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 345567776 7899999999999999998743
No 458
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.012 Score=57.99 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=56.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechh-------hHHH----------HHhh---------hhhhHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS-------EFVE----------LFVG---------VGASRVRDLFE 355 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s-------~~~~----------~~~G---------~~~~~vr~lF~ 355 (723)
-+.|.||+|+|||+|.+.+++.... --+.+++. .+.. .+.+ .+..+-|-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 4889999999999999999985410 00001100 0000 0000 11223344566
Q ss_pred HHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 356 KAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 356 ~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
.|-...|.++++||-.+-. +......+.+++..+. .. +..+|.+|+.++
T Consensus 108 ral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 108 QALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 6667889999999975432 2333445555555442 12 345666677654
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.02 E-value=0.061 Score=57.21 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=27.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
..|+-++|+||+|+|||+++..+|..+ |..+..+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 446778999999999999999888755 544544443
No 460
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.00 E-value=0.015 Score=58.60 Aligned_cols=41 Identities=34% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc-CCceeeechhhHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFVE 340 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is~s~~~~ 340 (723)
..|.-+++.|+||+|||+++..+..+. +..++.++..+|..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 567889999999999999999999888 77788888877654
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=96.00 E-value=0.074 Score=60.18 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHHHH-------H---hh----------hhhhHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFVEL-------F---VG----------VGASRVRDLFE 355 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~~~-------~---~G----------~~~~~vr~lF~ 355 (723)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+... | .| ......++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776643 566666665422210 1 01 11222334555
Q ss_pred HHHcCCCeEEEEcCccch
Q 004921 356 KAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 356 ~A~~~aP~ILfIDEiD~l 373 (723)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566556679999876543
No 462
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=95.97 E-value=0.0029 Score=56.71 Aligned_cols=69 Identities=30% Similarity=0.461 Sum_probs=36.4
Q ss_pred CCCCCCceechHHHHHHHHcCCeeEEEEeeCCcE----------EEEEEeCCcE----EEEECCC----ChhHHHHHHhC
Q 004921 135 SDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSA----------LQLTAVDGRR----ATVIVPN----DPDLIDILAMN 196 (723)
Q Consensus 135 ~~~~~~~~i~~s~f~~~~~~~~v~~v~~~~~~~~----------~~~~~~~~~~----~~~~~p~----~~~l~~~l~~~ 196 (723)
..-+..+.|+||+|++++++|+|++|.+.++... +....+++.. +....+. .+.|.+.+.++
T Consensus 22 ~~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 101 (110)
T PF06480_consen 22 SNNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYTTFYTPSIPSVDSFDEFLIEALVEK 101 (110)
T ss_dssp ----SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT--EEEE-S-HHHHHHHHHHHHHHT
T ss_pred cccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccEEEEEcCCCCCHHHHHHHHHHHHHC
Confidence 3445778999999999999999999999865443 1122222221 1222222 24567777778
Q ss_pred Ccceeec
Q 004921 197 GVDISVS 203 (723)
Q Consensus 197 ~v~~~~~ 203 (723)
|+++...
T Consensus 102 ~v~~~~~ 108 (110)
T PF06480_consen 102 GVKYESV 108 (110)
T ss_dssp T--TTT-
T ss_pred CCcccee
Confidence 8876554
No 463
>PLN02459 probable adenylate kinase
Probab=95.97 E-value=0.022 Score=60.00 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=28.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
..++|.||||+|||++++.+|...+++.+. ..+++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is--~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA--TGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe--CcHHH
Confidence 348889999999999999999999876554 44444
No 464
>PRK04182 cytidylate kinase; Provisional
Probab=95.95 E-value=0.0067 Score=59.46 Aligned_cols=29 Identities=41% Similarity=0.712 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|+|.|+||+|||++++.+|..+|.+++..
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 78999999999999999999999988763
No 465
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.94 E-value=0.025 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVA 323 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA 323 (723)
++..+++||.|+|||.+.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999974
No 466
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.028 Score=65.91 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
++...+-|.||+|.|||++|..+-+
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999977
No 467
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.92 E-value=0.054 Score=54.41 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999975
No 468
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.92 E-value=0.0053 Score=56.35 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~ 326 (723)
|+|.|+||+|||++|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 469
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.019 Score=60.10 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
-|-++++|....|.+|++||=-. +-+...+..+..||.++. .. +..|+..|...+.
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHH
Confidence 34567777778899999999421 224445666777777765 23 6678888887654
No 470
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.035 Score=62.79 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=26.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
.+.++|.||+|+|||+++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999988887643 34555555544
No 471
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.89 E-value=0.018 Score=61.84 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=22.8
Q ss_pred CCCCcc--eEEeCCCCCcHHHHHHHHHHhc
Q 004921 299 AKIPKG--CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 299 ~~~p~g--vLL~GPpGtGKT~LAralA~e~ 326 (723)
...+.| +.|.||.|+|||+|.+.+++..
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 344444 7899999999999999999844
No 472
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.88 E-value=0.036 Score=55.34 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=28.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
+.|+|++|+|||++++.++...+.+++..+ ++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D--~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDAD--KIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCC--HHHHH
Confidence 689999999999999999998777776553 44433
No 473
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.87 E-value=0.053 Score=55.17 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=55.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHH-----hcCCcee--ee------------chhh----HHHHHhhhhhhHHHHHHHHHHc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG-----EAGVPFF--SC------------AASE----FVELFVGVGASRVRDLFEKAKS 359 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~-----e~~~p~i--~i------------s~s~----~~~~~~G~~~~~vr~lF~~A~~ 359 (723)
+-++|+||.|+|||++.+.++. .+|.++- .. ...+ -.+.|.. +..++..++..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~-e~~~~~~il~~~-- 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFAS-EMSETAYILDYA-- 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHH-HHHHHHHHHHhc--
Confidence 4589999999999999999874 3343321 00 0000 0111221 122344444433
Q ss_pred CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 360 KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
..|+++++||+..=. ...+.......+++.+... +..+|.+|+..+..+
T Consensus 107 ~~~~lvllDE~~~gt---------~~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~ 155 (204)
T cd03282 107 DGDSLVLIDELGRGT---------SSADGFAISLAILECLIKK----ESTVFFATHFRDIAA 155 (204)
T ss_pred CCCcEEEeccccCCC---------CHHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHH
Confidence 457899999984310 1112233344455555422 446777888766443
No 474
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.87 E-value=0.051 Score=56.00 Aligned_cols=20 Identities=40% Similarity=0.808 Sum_probs=18.9
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~ 324 (723)
+-|.||+|||||+|...++.
T Consensus 34 vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999986
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.86 E-value=0.02 Score=63.56 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-++|.||||+|||+|++.+++..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhh
Confidence 38999999999999999999975
No 476
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.86 E-value=0.038 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..+.|.||+|+|||+|.+.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 477
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.85 E-value=0.0088 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~ 326 (723)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 478
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.85 E-value=0.041 Score=68.48 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=49.8
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC--CCCccccCCCCcccccccCCCC
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRPD 440 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~~Pd 440 (723)
-||+|||+..|.... ..+ +..++..|-.....-||.+|.+|.+|+ .|...++. -|..+|.|..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~ke----vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHH----HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 489999998875421 112 333444444344567899999999987 46655655 677788888888
Q ss_pred HHHHHHHHH
Q 004921 441 VAGRVKILQ 449 (723)
Q Consensus 441 ~~~R~~Il~ 449 (723)
..+-+.||.
T Consensus 1209 ~~DSrtILd 1217 (1355)
T PRK10263 1209 KIDSRTILD 1217 (1355)
T ss_pred HHHHHHhcC
Confidence 777776764
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.84 E-value=0.015 Score=55.14 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p 329 (723)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 358999999999999999999998864
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.061 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
.-+.|.||+|+|||+|++.+++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999973
No 481
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.83 E-value=0.009 Score=58.10 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
|.|+|+||||||+|+++|+.. |.+++.=.+.++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999998 8887754444444
No 482
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.82 E-value=0.0081 Score=58.39 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=26.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987654
No 483
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.82 E-value=0.025 Score=68.14 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=56.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---C--Cceeeechh----hHHHHHhhhhhhHHHHHHHHHH----------cCCCeE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---G--VPFFSCAAS----EFVELFVGVGASRVRDLFEKAK----------SKAPCI 364 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~--~p~i~is~s----~~~~~~~G~~~~~vr~lF~~A~----------~~aP~I 364 (723)
-++|+|+||||||++++++...+ + .+++.+..+ .-+....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 48999999999999999886543 4 444443322 1111112222333333332210 123579
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
|+|||+.-+.. ..+..|+..+ .....+++++=.+....
T Consensus 420 lIvDEaSMvd~--------------~~~~~Ll~~~---~~~~rlilvGD~~QLps 457 (720)
T TIGR01448 420 LIVDESSMMDT--------------WLALSLLAAL---PDHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEeccccCCH--------------HHHHHHHHhC---CCCCEEEEECccccccC
Confidence 99999976621 2455566543 34566788876665443
No 484
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.80 E-value=0.092 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..-+.|.||+|+|||+|++++++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999853
No 485
>PRK08233 hypothetical protein; Provisional
Probab=95.74 E-value=0.01 Score=58.37 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC-Cceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG-VPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~-~p~i~is 334 (723)
.-|.+.|+||+|||++|+.|+..++ .+++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3478899999999999999999885 4454444
No 486
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.74 E-value=0.081 Score=59.64 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
.|.-++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 46779999999999999999998755 5566655553
No 487
>PLN02199 shikimate kinase
Probab=95.73 E-value=0.018 Score=61.47 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=29.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 47999999999999999999999999998766
No 488
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.72 E-value=0.054 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|.+.+++..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999864
No 489
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.72 E-value=0.043 Score=63.54 Aligned_cols=78 Identities=29% Similarity=0.279 Sum_probs=49.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH------hhh----------------------h
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF------VGV----------------------G 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~------~G~----------------------~ 346 (723)
|......++++||||+|||+++..++.+. |-+.++++..+-.+.+ .|. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 44445568999999999999999887643 6677777653221110 000 0
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCccchhh
Q 004921 347 ASRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 347 ~~~vr~lF~~A~~~aP~ILfIDEiD~l~~ 375 (723)
...+..+.+......|.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 11122333344456788999999988854
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.71 E-value=0.031 Score=61.73 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=41.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC------Cceeeech-hhHH------------HHHhhhhhhHHHHHHHHHHcCCCeE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG------VPFFSCAA-SEFV------------ELFVGVGASRVRDLFEKAKSKAPCI 364 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~------~p~i~is~-s~~~------------~~~~G~~~~~vr~lF~~A~~~aP~I 364 (723)
.++++||+|+|||+++++++++.. ..++.+.. .++. ..-++............+.+..|.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~ 215 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHA 215 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCE
Confidence 489999999999999999998752 22332211 0110 0001111123445556677789999
Q ss_pred EEEcCcc
Q 004921 365 VFIDEID 371 (723)
Q Consensus 365 LfIDEiD 371 (723)
+++.|+.
T Consensus 216 i~vGEiR 222 (358)
T TIGR02524 216 ILVGEAR 222 (358)
T ss_pred EeeeeeC
Confidence 9999973
No 491
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.68 E-value=0.027 Score=59.11 Aligned_cols=72 Identities=28% Similarity=0.269 Sum_probs=44.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC----------CceeeechhhHHHH------Hhh-------------hhhhHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG----------VPFFSCAASEFVEL------FVG-------------VGASRVRDL 353 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~----------~p~i~is~s~~~~~------~~G-------------~~~~~vr~l 353 (723)
..+-|.|++|||||+++|.+.+-.. .++..++..+..+. .+| .+..+-|-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~ 119 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG 119 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence 4588999999999999999998542 11111111111110 011 122334455
Q ss_pred HHHHHcCCCeEEEEcCccchh
Q 004921 354 FEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 354 F~~A~~~aP~ILfIDEiD~l~ 374 (723)
+..|....|.+|+.||..+..
T Consensus 120 IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 120 IARALALNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHHhhCCcEEEecCchhhc
Confidence 667777889999999987764
No 492
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.63 E-value=0.046 Score=56.12 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~ 324 (723)
+-++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999864
No 493
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.59 E-value=0.062 Score=59.60 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 275 DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 275 ~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
++++..+..++..+.+ ..|..+++.||.|||||++.+++...+
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 4455555555554322 345679999999999999999998766
No 494
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.57 E-value=0.045 Score=53.84 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=29.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
+.-+.|.|+||+|||++|+.+++.+ +..+..++...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4468999999999999999999876 4445656654443
No 495
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.56 E-value=0.035 Score=58.99 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=36.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH-H--HH-hhhhhhHHH----HHHHHHHcCCCeEEEEcCccch
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-E--LF-VGVGASRVR----DLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~-~--~~-~G~~~~~vr----~lF~~A~~~aP~ILfIDEiD~l 373 (723)
|+|+|.||+|||++|+.|+..+ +..+..++...+. . .| ....++.+| ..+..+... ..||++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999998854 5677777754443 1 11 122334444 334444333 379999998665
No 496
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.56 E-value=0.056 Score=65.54 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+.++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 46899999999999999999875
No 497
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.034 Score=59.24 Aligned_cols=21 Identities=48% Similarity=0.806 Sum_probs=19.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~ 324 (723)
-+-|.||+|+|||++.|.||+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 377999999999999999998
No 498
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.54 E-value=0.042 Score=68.79 Aligned_cols=133 Identities=21% Similarity=0.308 Sum_probs=85.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH--HHhh----hhhh---HHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE--LFVG----VGAS---RVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~--~~~G----~~~~---~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
.+||-||..+|||.+...+|++.|-.|+.++-.+..+ .|.| .... --..++-.|.+. .--|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccCc
Confidence 4899999999999999999999999999998654322 2333 2111 112233333332 2488999985432
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHhhcCC---------CCCCceEEEEeeCCCC------CCCccccCCCCcccccccCCC
Q 004921 375 RQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVLAATNRPD------VLDSALLRPGRFDRQVTVDRP 439 (723)
Q Consensus 375 ~~r~~~~~~~~~~~~~~ln~LL~~ld~~---------~~~~~ViVIaaTN~p~------~LD~aLlrpgRfd~~I~v~~P 439 (723)
...-..+|.||..-..+ .+...+.+.||-|.|. .|..|++. || ..++|.--
T Consensus 969 -----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddi 1034 (4600)
T COG5271 969 -----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDI 1034 (4600)
T ss_pred -----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccC
Confidence 23344566665432111 2345677888888775 37888887 88 45667666
Q ss_pred CHHHHHHHHHHH
Q 004921 440 DVAGRVKILQVH 451 (723)
Q Consensus 440 d~~~R~~Il~~~ 451 (723)
..++...||+-.
T Consensus 1035 pedEle~ILh~r 1046 (4600)
T COG5271 1035 PEDELEEILHGR 1046 (4600)
T ss_pred cHHHHHHHHhcc
Confidence 677777777643
No 499
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.53 E-value=0.014 Score=64.02 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=46.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeech-hhHH-------HH------HhhhhhhHHHHHHHHHHcCCCeEE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAA-SEFV-------EL------FVGVGASRVRDLFEKAKSKAPCIV 365 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~-s~~~-------~~------~~G~~~~~vr~lF~~A~~~aP~IL 365 (723)
.+++++.|++|+|||++.+++.+...- ..+.+.. .++. .. ..|.+.-.+.+++..+.+..|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 357999999999999999999886531 1122111 1111 00 012223456788899999999999
Q ss_pred EEcCcc
Q 004921 366 FIDEID 371 (723)
Q Consensus 366 fIDEiD 371 (723)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 500
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.52 E-value=0.099 Score=52.82 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=21.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|.+.+++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999853
Done!