Query 004921
Match_columns 723
No_of_seqs 553 out of 3900
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 6.9E-84 2.4E-88 725.9 43.2 448 263-715 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-81 4.2E-86 711.4 43.2 461 246-717 9-470 (499)
3 4b4t_J 26S protease regulatory 100.0 6E-52 2E-56 453.9 27.2 252 261-512 140-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.1E-50 3.7E-55 445.0 27.3 254 259-512 172-426 (437)
5 4b4t_H 26S protease regulatory 100.0 3.5E-50 1.2E-54 444.9 26.2 256 261-516 201-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 1.9E-49 6.4E-54 440.3 28.2 253 260-512 172-425 (437)
7 4b4t_M 26S protease regulatory 100.0 8.4E-50 2.9E-54 442.8 23.8 253 259-511 171-424 (434)
8 4b4t_K 26S protease regulatory 100.0 1.1E-48 3.8E-53 433.5 26.7 252 260-511 163-416 (428)
9 2di4_A Zinc protease, cell div 100.0 2.8E-48 9.7E-53 396.3 15.8 205 511-720 2-206 (238)
10 3cf2_A TER ATPase, transitiona 100.0 3.7E-44 1.3E-48 423.0 9.9 232 262-493 470-702 (806)
11 3cf2_A TER ATPase, transitiona 100.0 4.5E-41 1.5E-45 396.8 24.6 246 263-511 198-461 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 6.7E-38 2.3E-42 325.2 26.9 253 261-513 4-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 4.6E-37 1.6E-41 327.3 25.4 230 263-492 9-239 (301)
14 2x8a_A Nuclear valosin-contain 100.0 4.2E-37 1.4E-41 323.7 19.3 245 263-510 4-265 (274)
15 3h4m_A Proteasome-activating n 100.0 1.1E-35 3.6E-40 312.6 24.2 250 262-511 10-260 (285)
16 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.8E-36 6.1E-41 313.7 17.3 256 265-520 2-260 (262)
17 1ixz_A ATP-dependent metallopr 100.0 8.9E-35 3E-39 301.1 27.0 245 262-506 9-253 (254)
18 1iy2_A ATP-dependent metallopr 100.0 2.3E-34 7.8E-39 302.6 28.2 258 248-506 20-277 (278)
19 1xwi_A SKD1 protein; VPS4B, AA 100.0 8E-35 2.8E-39 313.2 23.1 225 262-492 5-233 (322)
20 3eie_A Vacuolar protein sortin 100.0 1.2E-34 4.2E-39 311.3 20.3 226 262-493 11-239 (322)
21 2qp9_X Vacuolar protein sortin 100.0 9.4E-34 3.2E-38 308.8 22.5 226 261-492 43-271 (355)
22 2r62_A Cell division protease 100.0 9.7E-36 3.3E-40 310.3 5.0 250 263-512 5-256 (268)
23 3hu3_A Transitional endoplasmi 100.0 2.5E-33 8.7E-38 317.1 25.1 243 264-509 199-459 (489)
24 2zan_A Vacuolar protein sortin 100.0 1.7E-32 5.7E-37 307.6 20.9 227 260-492 125-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 2.2E-30 7.4E-35 282.4 22.3 243 263-511 78-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.7E-30 5.9E-35 274.7 18.5 241 262-508 14-271 (297)
27 1ypw_A Transitional endoplasmi 100.0 1.6E-32 5.4E-37 328.1 1.3 232 262-493 470-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 1.4E-29 4.8E-34 278.9 22.6 242 262-509 108-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 1.4E-29 4.7E-34 268.8 12.3 229 297-540 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 3.5E-27 1.2E-31 282.0 23.9 229 263-494 198-427 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.4E-25 4.9E-30 252.1 -2.1 205 263-484 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 3.6E-22 1.2E-26 211.6 12.8 226 267-504 28-281 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3.1E-21 1.1E-25 209.5 15.6 220 264-509 39-330 (368)
34 3pfi_A Holliday junction ATP-d 99.8 7.9E-20 2.7E-24 196.4 21.3 216 262-509 22-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 4.1E-19 1.4E-23 189.2 18.8 215 264-509 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 1.1E-19 3.8E-24 191.8 12.1 236 269-508 15-298 (310)
37 1g41_A Heat shock protein HSLU 99.8 3.8E-20 1.3E-24 205.6 5.0 169 269-449 15-189 (444)
38 3hws_A ATP-dependent CLP prote 99.8 1.4E-18 4.9E-23 189.1 16.4 220 271-492 17-325 (363)
39 3m6a_A ATP-dependent protease 99.8 3E-19 1E-23 204.8 10.1 222 266-508 78-340 (543)
40 1d2n_A N-ethylmaleimide-sensit 99.8 2.4E-18 8.4E-23 179.5 15.0 204 268-486 32-246 (272)
41 2z4s_A Chromosomal replication 99.8 6.2E-18 2.1E-22 189.1 19.0 221 264-510 100-333 (440)
42 2v1u_A Cell division control p 99.8 2E-17 6.9E-22 179.3 20.2 224 266-510 16-277 (387)
43 3u61_B DNA polymerase accessor 99.8 3.9E-18 1.3E-22 182.2 13.9 208 257-507 14-235 (324)
44 1sxj_A Activator 1 95 kDa subu 99.7 1.7E-17 5.6E-22 189.3 14.8 230 256-509 26-274 (516)
45 3pvs_A Replication-associated 99.7 2.3E-17 7.8E-22 184.8 14.3 205 264-509 21-244 (447)
46 1l8q_A Chromosomal replication 99.7 5.3E-17 1.8E-21 173.7 16.0 197 264-488 6-214 (324)
47 2chg_A Replication factor C sm 99.7 1.2E-16 4.2E-21 158.5 17.6 202 263-507 11-224 (226)
48 2qby_B CDC6 homolog 3, cell di 99.7 2.2E-16 7.6E-21 171.7 19.3 214 267-510 18-271 (384)
49 2r44_A Uncharacterized protein 99.7 9.4E-17 3.2E-21 172.1 15.8 213 267-512 25-300 (331)
50 1g8p_A Magnesium-chelatase 38 99.7 1.4E-16 4.7E-21 171.3 16.4 218 264-512 19-325 (350)
51 1um8_A ATP-dependent CLP prote 99.7 1.3E-16 4.3E-21 174.5 14.7 234 270-505 22-361 (376)
52 1njg_A DNA polymerase III subu 99.7 5.6E-16 1.9E-20 155.4 17.9 210 262-506 16-248 (250)
53 1in4_A RUVB, holliday junction 99.7 1.2E-15 4E-20 164.5 21.6 214 265-510 21-251 (334)
54 3bos_A Putative DNA replicatio 99.7 2.1E-16 7E-21 159.8 14.4 208 265-507 24-241 (242)
55 1jbk_A CLPB protein; beta barr 99.7 7.5E-17 2.6E-21 156.4 10.4 159 265-448 18-194 (195)
56 2qby_A CDC6 homolog 1, cell di 99.7 1.2E-15 4E-20 165.1 19.7 222 266-510 17-273 (386)
57 1sxj_D Activator 1 41 kDa subu 99.7 4E-16 1.4E-20 167.7 15.2 212 258-507 26-261 (353)
58 4fcw_A Chaperone protein CLPB; 99.7 1.3E-16 4.6E-21 168.7 10.6 203 269-490 17-279 (311)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 4.8E-16 1.6E-20 185.1 15.4 221 266-511 183-435 (758)
60 3pxg_A Negative regulator of g 99.7 5.2E-16 1.8E-20 174.8 14.5 205 265-509 176-406 (468)
61 1fnn_A CDC6P, cell division co 99.6 7.2E-15 2.4E-19 159.7 20.2 220 266-510 14-275 (389)
62 2chq_A Replication factor C sm 99.6 1.9E-15 6.4E-20 159.8 14.9 203 261-506 9-223 (319)
63 3pxi_A Negative regulator of g 99.6 2.8E-15 9.5E-20 178.6 16.3 189 265-493 176-389 (758)
64 3pxi_A Negative regulator of g 99.6 1.5E-15 5.1E-20 180.8 13.1 196 269-488 491-723 (758)
65 1sxj_B Activator 1 37 kDa subu 99.6 6.2E-15 2.1E-19 156.0 15.9 202 262-506 14-228 (323)
66 1qvr_A CLPB protein; coiled co 99.6 5.4E-15 1.8E-19 178.2 16.8 202 265-492 166-395 (854)
67 3te6_A Regulatory protein SIR3 99.6 1.3E-15 4.4E-20 162.8 9.4 138 300-454 43-213 (318)
68 1iqp_A RFCS; clamp loader, ext 99.6 1.4E-14 4.9E-19 153.5 17.4 205 259-506 15-231 (327)
69 1r6b_X CLPA protein; AAA+, N-t 99.6 3.1E-15 1E-19 178.1 13.2 195 269-488 458-714 (758)
70 2p65_A Hypothetical protein PF 99.6 1E-15 3.5E-20 148.2 7.3 152 265-440 18-187 (187)
71 1jr3_A DNA polymerase III subu 99.6 2.3E-14 8E-19 155.1 18.2 209 263-506 10-241 (373)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.4E-15 4.8E-20 172.1 7.1 210 269-510 22-286 (500)
73 2bjv_A PSP operon transcriptio 99.5 2.6E-14 8.9E-19 148.2 11.9 204 266-502 3-250 (265)
74 3f9v_A Minichromosome maintena 99.5 5.9E-15 2E-19 170.8 7.1 218 269-509 295-587 (595)
75 1sxj_E Activator 1 40 kDa subu 99.5 8.5E-14 2.9E-18 150.0 13.8 194 260-488 5-243 (354)
76 1ojl_A Transcriptional regulat 99.5 1.8E-14 6E-19 153.4 8.1 201 269-503 2-246 (304)
77 1qvr_A CLPB protein; coiled co 99.5 4.4E-14 1.5E-18 170.3 11.9 201 268-489 557-819 (854)
78 1sxj_C Activator 1 40 kDa subu 99.5 1.3E-13 4.4E-18 148.5 14.0 209 259-506 15-236 (340)
79 1w5s_A Origin recognition comp 99.4 3.2E-12 1.1E-16 139.9 17.8 227 266-509 19-293 (412)
80 3cmw_A Protein RECA, recombina 99.4 2.6E-13 8.8E-18 170.5 9.0 154 263-417 1014-1218(1706)
81 3n70_A Transport activator; si 99.3 2.7E-12 9.3E-17 121.2 9.3 112 270-417 2-116 (145)
82 3co5_A Putative two-component 99.3 1.7E-12 5.9E-17 122.4 7.8 112 270-417 5-116 (143)
83 3k1j_A LON protease, ATP-depen 99.3 5.8E-12 2E-16 146.2 13.0 131 361-508 201-374 (604)
84 1a5t_A Delta prime, HOLB; zinc 99.3 1.7E-11 5.7E-16 131.9 15.3 163 300-486 22-209 (334)
85 3kw6_A 26S protease regulatory 99.3 1.9E-11 6.5E-16 103.5 9.6 75 437-511 1-75 (78)
86 2krk_A 26S protease regulatory 99.2 2.9E-11 9.8E-16 104.5 9.3 78 435-512 7-84 (86)
87 3vlf_B 26S protease regulatory 99.2 4.3E-11 1.5E-15 103.8 8.8 79 440-518 2-80 (88)
88 2gno_A DNA polymerase III, gam 99.2 1.1E-10 3.7E-15 124.2 12.7 142 273-452 1-152 (305)
89 3ec2_A DNA replication protein 99.1 2.9E-10 9.9E-15 110.7 11.9 134 264-418 5-144 (180)
90 4akg_A Glutathione S-transfera 99.1 3.3E-10 1.1E-14 148.3 13.5 170 302-486 1267-1486(2695)
91 1ny5_A Transcriptional regulat 99.0 9.4E-10 3.2E-14 120.8 9.7 206 268-506 136-384 (387)
92 3aji_B S6C, proteasome (prosom 99.0 1.1E-09 3.7E-14 93.7 7.6 73 440-512 2-74 (83)
93 2w58_A DNAI, primosome compone 98.9 1.5E-09 5.2E-14 107.3 9.0 102 265-373 21-127 (202)
94 2dzn_B 26S protease regulatory 98.9 7.5E-10 2.5E-14 94.6 2.8 72 442-513 1-72 (82)
95 3f8t_A Predicted ATPase involv 98.8 2.9E-08 9.9E-13 110.1 13.2 210 271-510 215-484 (506)
96 2fna_A Conserved hypothetical 98.8 2E-07 6.9E-12 99.1 19.3 187 265-484 9-252 (357)
97 2vhj_A Ntpase P4, P4; non- hyd 98.7 2.2E-09 7.7E-14 114.0 2.6 119 301-424 122-242 (331)
98 2qen_A Walker-type ATPase; unk 98.7 5.2E-07 1.8E-11 95.8 21.1 190 266-484 9-248 (350)
99 2kjq_A DNAA-related protein; s 98.7 5.7E-09 2E-13 99.2 4.9 102 302-434 36-143 (149)
100 2qgz_A Helicase loader, putati 98.7 1.1E-08 3.6E-13 109.0 6.3 101 265-373 120-226 (308)
101 3dzd_A Transcriptional regulat 98.7 1.8E-08 6.1E-13 109.9 8.2 189 269-488 129-360 (368)
102 2r2a_A Uncharacterized protein 98.5 4E-08 1.4E-12 98.0 4.6 130 301-443 4-157 (199)
103 1svm_A Large T antigen; AAA+ f 98.5 8E-08 2.8E-12 104.9 6.3 118 298-438 165-284 (377)
104 4akg_A Glutathione S-transfera 98.5 2.2E-06 7.5E-11 112.8 19.2 164 303-488 646-839 (2695)
105 3cmu_A Protein RECA, recombina 98.5 3.5E-07 1.2E-11 116.7 11.3 118 298-415 1423-1562(2050)
106 1tue_A Replication protein E1; 98.1 1E-06 3.5E-11 87.8 3.7 30 303-332 59-88 (212)
107 1jr3_D DNA polymerase III, del 98.1 1.7E-05 5.7E-10 84.9 12.4 176 300-509 16-209 (343)
108 2c9o_A RUVB-like 1; hexameric 98.0 9.7E-06 3.3E-10 90.6 9.2 127 362-509 296-437 (456)
109 3vkg_A Dynein heavy chain, cyt 98.0 1.4E-05 4.8E-10 106.0 11.5 137 302-452 1304-1469(3245)
110 1ye8_A Protein THEP1, hypothet 97.8 2.8E-05 9.5E-10 75.8 7.7 27 304-330 2-28 (178)
111 2cvh_A DNA repair and recombin 97.8 3.5E-05 1.2E-09 76.2 7.7 39 299-337 17-55 (220)
112 3vkg_A Dynein heavy chain, cyt 97.8 5.3E-05 1.8E-09 100.6 11.4 126 303-449 605-750 (3245)
113 1u0j_A DNA replication protein 97.7 4.9E-05 1.7E-09 78.8 7.8 27 302-328 104-130 (267)
114 2w0m_A SSO2452; RECA, SSPF, un 97.7 6.1E-05 2.1E-09 74.9 7.7 36 300-335 21-59 (235)
115 1n0w_A DNA repair protein RAD5 97.6 8.8E-05 3E-09 74.5 8.2 77 299-375 21-133 (243)
116 1z6t_A APAF-1, apoptotic prote 97.6 0.00079 2.7E-08 77.1 17.0 175 266-482 121-328 (591)
117 1xp8_A RECA protein, recombina 97.6 0.0001 3.5E-09 80.0 8.7 117 298-414 70-208 (366)
118 2zr9_A Protein RECA, recombina 97.6 4.5E-05 1.6E-09 82.3 5.7 77 299-375 58-153 (349)
119 2z43_A DNA repair and recombin 97.6 9.4E-05 3.2E-09 78.8 8.0 116 298-414 103-255 (324)
120 2ehv_A Hypothetical protein PH 97.6 0.00024 8.2E-09 71.6 10.3 112 300-420 28-185 (251)
121 3hr8_A Protein RECA; alpha and 97.6 0.00012 4E-09 79.2 8.2 115 299-413 58-194 (356)
122 3upu_A ATP-dependent DNA helic 97.5 0.00019 6.4E-09 80.2 10.0 59 256-326 11-69 (459)
123 3cmu_A Protein RECA, recombina 97.5 0.00012 4.2E-09 93.7 8.9 119 298-416 728-868 (2050)
124 3sfz_A APAF-1, apoptotic pepti 97.5 0.0027 9.1E-08 78.5 20.3 176 266-481 121-327 (1249)
125 1v5w_A DMC1, meiotic recombina 97.4 0.00024 8.3E-09 76.3 8.3 116 299-415 119-272 (343)
126 1u94_A RECA protein, recombina 97.4 0.00022 7.6E-09 77.1 7.9 78 298-375 59-155 (356)
127 1qhx_A CPT, protein (chloramph 97.4 0.00012 4E-09 70.2 5.1 39 302-340 3-41 (178)
128 4a74_A DNA repair and recombin 97.4 0.00023 7.8E-09 70.8 7.3 28 299-326 22-49 (231)
129 3lda_A DNA repair protein RAD5 97.3 0.00025 8.5E-09 77.9 6.6 118 298-416 174-327 (400)
130 1pzn_A RAD51, DNA repair and r 97.2 0.00051 1.7E-08 74.0 8.3 120 298-418 127-287 (349)
131 1g41_A Heat shock protein HSLU 97.2 0.0018 6E-08 71.9 12.4 95 349-449 240-346 (444)
132 2i1q_A DNA repair and recombin 97.2 0.00042 1.4E-08 73.4 7.1 114 299-413 95-255 (322)
133 3cmw_A Protein RECA, recombina 97.2 0.00023 8E-09 90.1 5.8 78 298-375 728-824 (1706)
134 2dr3_A UPF0273 protein PH0284; 97.2 0.0014 4.7E-08 65.7 10.3 38 298-335 19-59 (247)
135 3vaa_A Shikimate kinase, SK; s 97.1 0.00085 2.9E-08 65.8 8.1 33 302-334 25-57 (199)
136 3trf_A Shikimate kinase, SK; a 97.1 0.00024 8.2E-09 68.5 4.0 33 302-334 5-37 (185)
137 1gvn_B Zeta; postsegregational 97.1 0.00098 3.4E-08 69.8 8.9 60 275-338 10-69 (287)
138 2zts_A Putative uncharacterize 97.1 0.0022 7.5E-08 64.3 10.6 37 299-335 27-67 (251)
139 3io5_A Recombination and repai 97.0 0.00075 2.6E-08 71.5 6.8 110 304-413 30-168 (333)
140 2p5t_B PEZT; postsegregational 97.0 0.0012 4.2E-08 67.4 8.3 40 299-338 29-68 (253)
141 2rhm_A Putative kinase; P-loop 97.0 0.00034 1.2E-08 67.6 3.9 35 299-333 2-36 (193)
142 1nlf_A Regulatory protein REPA 97.0 0.0011 3.9E-08 68.6 7.6 25 302-326 30-54 (279)
143 2r8r_A Sensor protein; KDPD, P 97.0 0.007 2.4E-07 61.1 12.9 161 304-490 8-209 (228)
144 2iyv_A Shikimate kinase, SK; t 96.9 0.00055 1.9E-08 65.9 4.0 32 303-334 3-34 (184)
145 2a5y_B CED-4; apoptosis; HET: 96.9 0.012 4.1E-07 67.0 15.5 170 272-479 131-334 (549)
146 3kb2_A SPBC2 prophage-derived 96.9 0.00063 2.2E-08 64.3 4.1 31 304-334 3-33 (173)
147 3iij_A Coilin-interacting nucl 96.8 0.00068 2.3E-08 65.1 4.1 33 302-334 11-43 (180)
148 1via_A Shikimate kinase; struc 96.8 0.00063 2.2E-08 65.1 3.7 30 304-333 6-35 (175)
149 3jvv_A Twitching mobility prot 96.8 0.0016 5.3E-08 70.4 7.1 96 304-420 125-234 (356)
150 1zp6_A Hypothetical protein AT 96.8 0.00084 2.9E-08 64.9 4.4 39 300-338 7-45 (191)
151 1y63_A LMAJ004144AAA protein; 96.8 0.00072 2.4E-08 65.5 3.9 33 302-334 10-43 (184)
152 1kag_A SKI, shikimate kinase I 96.8 0.00078 2.7E-08 64.0 4.0 31 302-332 4-34 (173)
153 2iut_A DNA translocase FTSK; n 96.8 0.0055 1.9E-07 69.8 11.5 74 363-449 345-420 (574)
154 1zuh_A Shikimate kinase; alpha 96.8 0.00079 2.7E-08 63.9 3.9 32 303-334 8-39 (168)
155 2r6a_A DNAB helicase, replicat 96.7 0.0022 7.6E-08 71.4 8.1 38 298-335 199-240 (454)
156 2cdn_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 65.2 4.5 35 300-334 18-52 (201)
157 2orw_A Thymidine kinase; TMTK, 96.7 0.00089 3E-08 65.4 4.1 30 304-333 5-37 (184)
158 2ius_A DNA translocase FTSK; n 96.7 0.0046 1.6E-07 69.8 10.5 76 361-449 296-374 (512)
159 1qf9_A UMP/CMP kinase, protein 96.7 0.0009 3.1E-08 64.4 3.6 34 301-334 5-38 (194)
160 3e1s_A Exodeoxyribonuclease V, 96.7 0.0022 7.5E-08 73.7 7.3 97 303-416 205-317 (574)
161 1tev_A UMP-CMP kinase; ploop, 96.7 0.00092 3.1E-08 64.4 3.6 32 302-333 3-34 (196)
162 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.4E-08 64.5 4.6 33 302-334 18-50 (202)
163 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0035 1.2E-07 64.3 8.1 38 302-339 4-44 (260)
164 1ly1_A Polynucleotide kinase; 96.6 0.00075 2.6E-08 64.3 2.8 31 302-332 2-33 (181)
165 1cr0_A DNA primase/helicase; R 96.6 0.0018 6.2E-08 67.5 5.9 36 299-334 32-71 (296)
166 3lw7_A Adenylate kinase relate 96.6 0.001 3.4E-08 62.6 3.5 29 304-333 3-31 (179)
167 2fz4_A DNA repair protein RAD2 96.6 0.0072 2.5E-07 61.2 10.0 32 304-335 110-141 (237)
168 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.1E-08 62.6 4.0 32 303-334 3-34 (173)
169 4gp7_A Metallophosphoesterase; 96.6 0.0029 9.8E-08 60.6 6.6 19 303-321 10-28 (171)
170 2ze6_A Isopentenyl transferase 96.6 0.0013 4.3E-08 67.5 4.2 32 304-335 3-34 (253)
171 2q6t_A DNAB replication FORK h 96.5 0.0034 1.2E-07 69.7 7.8 38 298-335 196-237 (444)
172 2c95_A Adenylate kinase 1; tra 96.5 0.0012 4.2E-08 63.8 3.7 33 302-334 9-41 (196)
173 2b8t_A Thymidine kinase; deoxy 96.5 0.0016 5.3E-08 65.8 4.3 69 304-373 14-101 (223)
174 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.8E-08 65.2 3.9 32 302-333 4-35 (220)
175 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4E-08 63.6 3.1 31 303-333 5-35 (186)
176 3dl0_A Adenylate kinase; phosp 96.5 0.0015 5E-08 64.7 3.8 30 305-334 3-32 (216)
177 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.6E-08 63.6 3.4 33 302-334 12-44 (199)
178 2vli_A Antibiotic resistance p 96.5 0.0013 4.4E-08 63.0 3.1 30 302-331 5-34 (183)
179 2pt5_A Shikimate kinase, SK; a 96.5 0.0016 5.6E-08 61.4 3.8 31 304-334 2-32 (168)
180 1zd8_A GTP:AMP phosphotransfer 96.4 0.0014 4.6E-08 65.7 3.4 32 302-333 7-38 (227)
181 3bh0_A DNAB-like replicative h 96.4 0.0077 2.6E-07 63.7 9.4 38 298-335 64-104 (315)
182 3fb4_A Adenylate kinase; psych 96.4 0.0015 5.3E-08 64.4 3.7 30 305-334 3-32 (216)
183 3be4_A Adenylate kinase; malar 96.4 0.0013 4.6E-08 65.3 3.2 31 303-333 6-36 (217)
184 3umf_A Adenylate kinase; rossm 96.4 0.0017 5.7E-08 65.3 3.9 38 300-339 27-64 (217)
185 1kht_A Adenylate kinase; phosp 96.4 0.0013 4.6E-08 63.1 3.1 25 303-327 4-28 (192)
186 2pez_A Bifunctional 3'-phospho 96.4 0.0024 8.1E-08 61.2 4.8 36 302-337 5-43 (179)
187 3tlx_A Adenylate kinase 2; str 96.4 0.0018 6E-08 65.9 3.8 34 301-334 28-61 (243)
188 1zak_A Adenylate kinase; ATP:A 96.4 0.0015 5E-08 65.1 3.2 33 301-333 4-36 (222)
189 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.5E-08 65.0 4.0 32 302-333 16-47 (233)
190 1ukz_A Uridylate kinase; trans 96.4 0.0018 6.3E-08 63.2 3.8 33 302-334 15-47 (203)
191 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0022 7.6E-08 68.5 4.5 70 303-372 172-251 (330)
192 1knq_A Gluconate kinase; ALFA/ 96.3 0.0025 8.4E-08 60.8 4.2 31 303-333 9-39 (175)
193 1vma_A Cell division protein F 96.3 0.0098 3.4E-07 62.8 9.0 72 300-371 102-196 (306)
194 4eun_A Thermoresistant glucoki 96.3 0.0027 9.3E-08 62.2 4.3 31 302-332 29-59 (200)
195 1g5t_A COB(I)alamin adenosyltr 96.2 0.014 4.9E-07 57.5 9.3 101 304-417 30-163 (196)
196 1s96_A Guanylate kinase, GMP k 96.2 0.0066 2.3E-07 60.9 7.0 25 303-327 17-41 (219)
197 3sr0_A Adenylate kinase; phosp 96.1 0.0028 9.6E-08 63.1 3.6 33 305-339 3-35 (206)
198 3dm5_A SRP54, signal recogniti 96.1 0.014 4.7E-07 64.7 9.5 72 301-372 99-193 (443)
199 3crm_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 67.2 4.0 35 302-336 5-39 (323)
200 2grj_A Dephospho-COA kinase; T 96.1 0.006 2.1E-07 59.9 5.9 31 304-334 14-44 (192)
201 1e4v_A Adenylate kinase; trans 96.1 0.0027 9.3E-08 62.8 3.4 29 305-333 3-31 (214)
202 1nks_A Adenylate kinase; therm 96.1 0.0033 1.1E-07 60.3 3.8 35 304-338 3-40 (194)
203 2eyu_A Twitching motility prot 96.1 0.0018 6E-08 66.9 1.9 69 303-371 26-108 (261)
204 1jjv_A Dephospho-COA kinase; P 96.1 0.0054 1.8E-07 60.1 5.3 29 304-333 4-32 (206)
205 2pbr_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 59.9 4.3 30 305-334 3-35 (195)
206 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0022 7.4E-08 69.1 2.5 32 304-335 26-57 (359)
207 1cke_A CK, MSSA, protein (cyti 96.0 0.0039 1.3E-07 61.9 4.2 31 303-333 6-36 (227)
208 2if2_A Dephospho-COA kinase; a 96.0 0.0029 9.9E-08 61.8 3.2 30 304-334 3-32 (204)
209 3kl4_A SRP54, signal recogniti 96.0 0.018 6.2E-07 63.7 9.9 73 301-373 96-191 (433)
210 3uie_A Adenylyl-sulfate kinase 96.0 0.0051 1.7E-07 60.2 4.8 37 301-337 24-63 (200)
211 2jaq_A Deoxyguanosine kinase; 95.9 0.0042 1.5E-07 60.2 3.8 28 305-332 3-30 (205)
212 2v54_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 60.0 4.2 33 302-334 4-37 (204)
213 2xb4_A Adenylate kinase; ATP-b 95.9 0.0039 1.3E-07 62.3 3.6 29 305-333 3-31 (223)
214 2bbw_A Adenylate kinase 4, AK4 95.9 0.005 1.7E-07 62.4 4.4 31 302-332 27-57 (246)
215 2ewv_A Twitching motility prot 95.9 0.005 1.7E-07 66.8 4.6 72 300-371 134-219 (372)
216 3ake_A Cytidylate kinase; CMP 95.9 0.0052 1.8E-07 59.9 4.1 31 304-334 4-34 (208)
217 2z0h_A DTMP kinase, thymidylat 95.8 0.0057 2E-07 59.0 4.2 30 305-334 3-35 (197)
218 1uf9_A TT1252 protein; P-loop, 95.7 0.0049 1.7E-07 59.8 3.4 32 302-334 8-39 (203)
219 1tf7_A KAIC; homohexamer, hexa 95.7 0.031 1.1E-06 63.3 10.5 108 300-417 279-417 (525)
220 1vt4_I APAF-1 related killer D 95.7 0.02 6.9E-07 69.4 9.0 43 272-325 131-173 (1221)
221 3r20_A Cytidylate kinase; stru 95.7 0.0065 2.2E-07 61.6 4.2 32 302-333 9-40 (233)
222 2wwf_A Thymidilate kinase, put 95.7 0.0039 1.3E-07 61.0 2.4 30 302-331 10-39 (212)
223 3gmt_A Adenylate kinase; ssgci 95.7 0.017 5.7E-07 58.5 7.0 29 305-333 11-39 (230)
224 1uj2_A Uridine-cytidine kinase 95.7 0.0066 2.2E-07 61.8 4.1 29 302-330 22-50 (252)
225 3nwj_A ATSK2; P loop, shikimat 95.6 0.0052 1.8E-07 63.0 3.2 32 303-334 49-80 (250)
226 1q57_A DNA primase/helicase; d 95.6 0.02 6.9E-07 64.4 8.1 38 298-335 238-279 (503)
227 3b6e_A Interferon-induced heli 95.6 0.039 1.3E-06 53.6 9.2 23 303-325 49-71 (216)
228 1w36_D RECD, exodeoxyribonucle 95.5 0.027 9.2E-07 65.1 9.0 23 303-325 165-187 (608)
229 2px0_A Flagellar biosynthesis 95.5 0.047 1.6E-06 57.2 10.1 35 301-335 104-142 (296)
230 2qor_A Guanylate kinase; phosp 95.5 0.014 4.8E-07 57.2 5.7 28 300-327 10-37 (204)
231 3bgw_A DNAB-like replicative h 95.4 0.027 9.2E-07 62.5 8.3 38 298-335 193-233 (444)
232 3tau_A Guanylate kinase, GMP k 95.4 0.014 4.8E-07 57.6 5.4 26 302-327 8-33 (208)
233 2h92_A Cytidylate kinase; ross 95.4 0.009 3.1E-07 59.0 3.9 33 302-334 3-35 (219)
234 2gxq_A Heat resistant RNA depe 95.4 0.073 2.5E-06 51.5 10.5 18 303-320 39-56 (207)
235 1nn5_A Similar to deoxythymidy 95.4 0.0053 1.8E-07 60.1 2.2 27 302-328 9-35 (215)
236 1ltq_A Polynucleotide kinase; 95.4 0.0067 2.3E-07 63.1 3.0 32 302-333 2-34 (301)
237 1vht_A Dephospho-COA kinase; s 95.4 0.009 3.1E-07 59.1 3.8 31 302-333 4-34 (218)
238 2plr_A DTMP kinase, probable t 95.4 0.0086 2.9E-07 58.4 3.6 27 303-329 5-31 (213)
239 3ney_A 55 kDa erythrocyte memb 95.4 0.027 9.3E-07 55.6 7.2 26 301-326 18-43 (197)
240 3a8t_A Adenylate isopentenyltr 95.4 0.0075 2.6E-07 64.5 3.3 35 302-336 40-74 (339)
241 3foz_A TRNA delta(2)-isopenten 95.3 0.0095 3.2E-07 62.9 3.8 37 301-337 9-45 (316)
242 1tf7_A KAIC; homohexamer, hexa 95.3 0.046 1.6E-06 61.9 9.6 110 302-420 39-188 (525)
243 1m7g_A Adenylylsulfate kinase; 95.2 0.012 4E-07 58.1 4.2 38 301-338 24-65 (211)
244 1ex7_A Guanylate kinase; subst 95.2 0.017 5.7E-07 56.6 5.1 24 303-326 2-25 (186)
245 3c8u_A Fructokinase; YP_612366 95.2 0.014 4.9E-07 57.4 4.7 26 302-327 22-47 (208)
246 2qt1_A Nicotinamide riboside k 95.2 0.0083 2.8E-07 58.8 3.0 32 303-334 22-54 (207)
247 2yvu_A Probable adenylyl-sulfa 95.2 0.017 5.7E-07 55.6 5.1 35 302-336 13-50 (186)
248 3zvl_A Bifunctional polynucleo 95.2 0.02 6.8E-07 63.0 6.3 34 301-334 257-290 (416)
249 3gfo_A Cobalt import ATP-bindi 95.2 0.027 9.1E-07 58.5 6.8 23 304-326 36-58 (275)
250 1w4r_A Thymidine kinase; type 95.2 0.02 6.8E-07 56.4 5.5 69 303-373 21-103 (195)
251 4a1f_A DNAB helicase, replicat 95.1 0.049 1.7E-06 58.2 8.8 37 299-335 43-82 (338)
252 4e22_A Cytidylate kinase; P-lo 95.1 0.013 4.5E-07 59.7 4.0 30 303-332 28-57 (252)
253 1kgd_A CASK, peripheral plasma 95.0 0.013 4.6E-07 56.3 3.8 25 302-326 5-29 (180)
254 1q3t_A Cytidylate kinase; nucl 95.0 0.015 5.2E-07 58.4 4.4 32 302-333 16-47 (236)
255 3thx_B DNA mismatch repair pro 95.0 0.053 1.8E-06 65.3 9.6 106 303-420 674-799 (918)
256 2f6r_A COA synthase, bifunctio 94.9 0.012 4.1E-07 61.1 3.3 31 302-333 75-105 (281)
257 3tui_C Methionine import ATP-b 94.9 0.036 1.2E-06 59.9 7.0 22 304-325 56-77 (366)
258 2j41_A Guanylate kinase; GMP, 94.9 0.015 5.1E-07 56.5 3.6 25 302-326 6-30 (207)
259 2axn_A 6-phosphofructo-2-kinas 94.8 0.053 1.8E-06 61.4 8.4 40 302-341 35-77 (520)
260 3rlf_A Maltose/maltodextrin im 94.8 0.02 6.9E-07 62.2 4.7 22 304-325 31-52 (381)
261 4g1u_C Hemin import ATP-bindin 94.8 0.055 1.9E-06 55.8 7.8 22 304-325 39-60 (266)
262 3llm_A ATP-dependent RNA helic 94.7 0.13 4.5E-06 51.3 10.4 21 303-323 77-97 (235)
263 3exa_A TRNA delta(2)-isopenten 94.7 0.017 6E-07 61.0 3.9 34 303-336 4-37 (322)
264 2qmh_A HPR kinase/phosphorylas 94.7 0.015 5.2E-07 57.5 3.2 32 302-334 34-65 (205)
265 1qde_A EIF4A, translation init 94.7 0.13 4.4E-06 50.5 10.1 53 265-319 13-68 (224)
266 3fvq_A Fe(3+) IONS import ATP- 94.7 0.061 2.1E-06 58.0 8.2 22 304-325 32-53 (359)
267 2bdt_A BH3686; alpha-beta prot 94.7 0.019 6.6E-07 55.2 3.9 34 304-338 4-37 (189)
268 1v43_A Sugar-binding transport 94.7 0.055 1.9E-06 58.6 7.9 22 304-325 39-60 (372)
269 1rz3_A Hypothetical protein rb 94.7 0.043 1.5E-06 53.6 6.4 34 302-335 22-58 (201)
270 1lvg_A Guanylate kinase, GMP k 94.6 0.029 9.8E-07 54.9 5.1 25 302-326 4-28 (198)
271 3d3q_A TRNA delta(2)-isopenten 94.6 0.016 5.6E-07 61.9 3.5 33 303-335 8-40 (340)
272 3asz_A Uridine kinase; cytidin 94.5 0.017 5.8E-07 56.6 2.9 31 302-332 6-38 (211)
273 3fdi_A Uncharacterized protein 94.5 0.021 7.3E-07 56.2 3.7 29 304-332 8-36 (201)
274 3bor_A Human initiation factor 94.4 0.083 2.8E-06 52.8 8.0 56 263-320 27-85 (237)
275 3thx_A DNA mismatch repair pro 94.4 0.097 3.3E-06 63.2 9.8 22 303-324 663-684 (934)
276 3a00_A Guanylate kinase, GMP k 94.4 0.022 7.7E-07 54.9 3.5 24 303-326 2-25 (186)
277 1hv8_A Putative ATP-dependent 94.4 0.2 6.7E-06 52.5 11.2 57 266-324 6-66 (367)
278 1xx6_A Thymidine kinase; NESG, 94.3 0.057 2E-06 52.9 6.2 69 304-373 10-93 (191)
279 3tr0_A Guanylate kinase, GMP k 94.3 0.026 8.7E-07 54.8 3.7 24 303-326 8-31 (205)
280 2pl3_A Probable ATP-dependent 94.2 0.2 6.9E-06 49.7 10.2 53 266-320 25-80 (236)
281 1t6n_A Probable ATP-dependent 94.1 0.41 1.4E-05 46.7 12.3 57 266-324 14-73 (220)
282 1x6v_B Bifunctional 3'-phospho 93.9 0.042 1.4E-06 63.4 5.1 37 302-338 52-91 (630)
283 3iuy_A Probable ATP-dependent 93.8 0.3 1E-05 48.1 10.7 58 261-320 14-75 (228)
284 3e70_C DPA, signal recognition 93.8 0.12 4.2E-06 54.9 8.2 27 300-326 127-153 (328)
285 1vec_A ATP-dependent RNA helic 93.8 0.23 7.8E-06 48.0 9.5 18 303-320 41-58 (206)
286 3lnc_A Guanylate kinase, GMP k 93.8 0.035 1.2E-06 55.4 3.7 24 303-326 28-52 (231)
287 4b3f_X DNA-binding protein smu 93.8 0.2 6.8E-06 58.1 10.5 32 305-336 208-242 (646)
288 1odf_A YGR205W, hypothetical 3 93.7 0.032 1.1E-06 58.4 3.3 28 300-327 29-56 (290)
289 1zu4_A FTSY; GTPase, signal re 93.7 0.091 3.1E-06 55.7 6.9 35 300-334 103-140 (320)
290 3eph_A TRNA isopentenyltransfe 93.7 0.03 1E-06 61.2 3.2 33 303-335 3-35 (409)
291 1wb9_A DNA mismatch repair pro 93.7 0.21 7.1E-06 59.4 10.6 23 303-325 608-630 (800)
292 3fe2_A Probable ATP-dependent 93.6 0.26 8.9E-06 49.2 9.9 56 263-320 26-84 (242)
293 1z6g_A Guanylate kinase; struc 93.6 0.037 1.3E-06 55.0 3.5 24 303-326 24-47 (218)
294 2oap_1 GSPE-2, type II secreti 93.6 0.023 7.8E-07 64.2 2.0 70 302-371 260-343 (511)
295 2jeo_A Uridine-cytidine kinase 93.5 0.036 1.2E-06 56.0 3.3 26 304-329 27-52 (245)
296 1htw_A HI0065; nucleotide-bind 93.5 0.049 1.7E-06 51.6 3.9 23 304-326 35-57 (158)
297 2xau_A PRE-mRNA-splicing facto 93.4 0.18 6E-06 59.9 9.4 23 303-325 110-132 (773)
298 1c9k_A COBU, adenosylcobinamid 93.4 0.041 1.4E-06 53.5 3.2 32 305-337 2-33 (180)
299 3pey_A ATP-dependent RNA helic 93.3 0.26 8.8E-06 52.2 9.7 21 302-322 44-64 (395)
300 1znw_A Guanylate kinase, GMP k 93.2 0.048 1.6E-06 53.5 3.5 25 303-327 21-45 (207)
301 3b9q_A Chloroplast SRP recepto 93.2 0.079 2.7E-06 55.6 5.3 27 300-326 98-124 (302)
302 3hdt_A Putative kinase; struct 93.1 0.047 1.6E-06 54.9 3.4 29 304-332 16-44 (223)
303 3j16_B RLI1P; ribosome recycli 93.1 0.31 1E-05 56.2 10.6 23 304-326 105-127 (608)
304 2xxa_A Signal recognition part 93.1 0.19 6.4E-06 55.5 8.4 71 300-370 98-192 (433)
305 1ls1_A Signal recognition part 93.0 0.23 8E-06 51.8 8.7 73 301-373 97-192 (295)
306 2v9p_A Replication protein E1; 93.0 0.056 1.9E-06 56.9 3.9 28 300-327 124-151 (305)
307 2v3c_C SRP54, signal recogniti 93.0 0.084 2.9E-06 58.3 5.5 35 301-335 98-135 (432)
308 2j9r_A Thymidine kinase; TK1, 92.9 0.12 4.1E-06 51.6 5.8 30 305-334 31-63 (214)
309 2oxc_A Probable ATP-dependent 92.8 0.3 1E-05 48.4 8.8 54 264-319 22-78 (230)
310 2gza_A Type IV secretion syste 92.8 0.049 1.7E-06 58.7 3.2 70 302-371 175-262 (361)
311 4f4c_A Multidrug resistance pr 92.8 0.14 4.7E-06 64.4 7.6 23 304-326 446-468 (1321)
312 1gtv_A TMK, thymidylate kinase 92.8 0.027 9.2E-07 55.1 0.9 23 305-327 3-25 (214)
313 3qf4_B Uncharacterized ABC tra 92.7 0.2 6.7E-06 57.7 8.2 24 303-326 382-405 (598)
314 1j8m_F SRP54, signal recogniti 92.7 0.18 6.1E-06 52.8 7.2 71 302-372 98-191 (297)
315 2og2_A Putative signal recogni 92.7 0.1 3.5E-06 56.2 5.5 27 300-326 155-181 (359)
316 3p32_A Probable GTPase RV1496/ 92.7 0.37 1.2E-05 51.5 9.8 24 303-326 80-103 (355)
317 1a7j_A Phosphoribulokinase; tr 92.6 0.04 1.4E-06 57.6 2.1 36 303-338 6-44 (290)
318 1bif_A 6-phosphofructo-2-kinas 92.6 0.22 7.6E-06 55.4 8.3 38 302-339 39-79 (469)
319 2j0s_A ATP-dependent RNA helic 92.6 0.46 1.6E-05 50.9 10.6 56 265-322 36-94 (410)
320 1q0u_A Bstdead; DEAD protein, 92.6 0.25 8.5E-06 48.5 7.7 18 303-320 42-59 (219)
321 2ged_A SR-beta, signal recogni 92.5 0.11 3.7E-06 49.5 4.8 25 302-326 48-72 (193)
322 3ozx_A RNAse L inhibitor; ATP 92.5 0.17 5.7E-06 57.5 7.1 23 304-326 296-318 (538)
323 4eaq_A DTMP kinase, thymidylat 92.4 0.075 2.6E-06 53.4 3.8 31 303-333 27-59 (229)
324 3ber_A Probable ATP-dependent 92.4 0.36 1.2E-05 48.6 8.8 53 266-320 43-98 (249)
325 3vkw_A Replicase large subunit 92.3 0.28 9.6E-06 54.2 8.4 23 303-325 162-184 (446)
326 1ewq_A DNA mismatch repair pro 92.3 0.25 8.4E-06 58.5 8.5 24 302-325 576-599 (765)
327 1m8p_A Sulfate adenylyltransfe 92.3 0.085 2.9E-06 60.4 4.4 37 302-338 396-436 (573)
328 3tqf_A HPR(Ser) kinase; transf 92.3 0.076 2.6E-06 51.3 3.3 24 302-325 16-39 (181)
329 2j37_W Signal recognition part 92.3 0.14 4.8E-06 57.7 6.0 36 300-335 99-137 (504)
330 2i3b_A HCR-ntpase, human cance 92.2 0.073 2.5E-06 52.0 3.3 23 304-326 3-25 (189)
331 2yhs_A FTSY, cell division pro 92.2 0.11 3.9E-06 58.1 5.2 26 301-326 292-317 (503)
332 2zj8_A DNA helicase, putative 92.1 0.39 1.3E-05 56.2 10.0 19 302-320 39-57 (720)
333 4a82_A Cystic fibrosis transme 92.1 0.13 4.5E-06 58.8 5.8 23 304-326 369-391 (578)
334 4i1u_A Dephospho-COA kinase; s 92.1 0.14 4.9E-06 50.9 5.3 30 304-334 11-40 (210)
335 1s2m_A Putative ATP-dependent 92.1 0.44 1.5E-05 50.8 9.6 57 265-323 20-79 (400)
336 1xti_A Probable ATP-dependent 92.1 0.65 2.2E-05 49.1 10.9 57 266-324 8-67 (391)
337 3tqc_A Pantothenate kinase; bi 92.1 0.22 7.5E-06 52.8 6.9 27 301-327 91-117 (321)
338 1p9r_A General secretion pathw 92.0 0.18 6.2E-06 55.4 6.5 24 304-327 169-192 (418)
339 1sky_E F1-ATPase, F1-ATP synth 92.0 0.13 4.4E-06 57.3 5.3 23 304-326 153-175 (473)
340 1wp9_A ATP-dependent RNA helic 92.0 0.39 1.3E-05 51.9 9.1 32 304-335 25-60 (494)
341 2ffh_A Protein (FFH); SRP54, s 91.9 0.43 1.5E-05 52.5 9.3 34 301-334 97-133 (425)
342 2z0m_A 337AA long hypothetical 91.9 0.34 1.2E-05 50.0 8.3 32 303-334 32-63 (337)
343 1sq5_A Pantothenate kinase; P- 91.9 0.086 2.9E-06 55.3 3.6 25 303-327 81-105 (308)
344 3eiq_A Eukaryotic initiation f 91.7 0.5 1.7E-05 50.5 9.5 53 266-320 40-95 (414)
345 3qf4_A ABC transporter, ATP-bi 91.7 0.3 1E-05 56.0 8.1 24 303-326 370-393 (587)
346 1np6_A Molybdopterin-guanine d 91.6 0.11 3.6E-06 50.2 3.6 25 302-326 6-30 (174)
347 3fmo_B ATP-dependent RNA helic 91.4 0.51 1.7E-05 49.1 8.9 53 265-319 91-148 (300)
348 3cr8_A Sulfate adenylyltranfer 91.4 0.23 7.9E-06 56.5 6.6 38 302-339 369-410 (552)
349 3sqw_A ATP-dependent RNA helic 91.4 0.74 2.5E-05 52.3 10.9 57 263-319 14-77 (579)
350 4a2p_A RIG-I, retinoic acid in 91.3 1.2 4.2E-05 49.5 12.5 22 303-324 23-44 (556)
351 2ocp_A DGK, deoxyguanosine kin 91.2 0.12 4.1E-06 51.8 3.7 27 302-328 2-29 (241)
352 3aez_A Pantothenate kinase; tr 91.2 0.12 4E-06 54.6 3.7 25 302-326 90-114 (312)
353 2va8_A SSO2462, SKI2-type heli 91.2 0.8 2.7E-05 53.5 11.2 20 302-321 46-65 (715)
354 3b85_A Phosphate starvation-in 91.1 0.085 2.9E-06 52.3 2.4 22 304-325 24-45 (208)
355 2onk_A Molybdate/tungstate ABC 91.1 0.086 3E-06 53.4 2.5 24 303-326 25-48 (240)
356 1p5z_B DCK, deoxycytidine kina 91.1 0.06 2E-06 54.9 1.3 30 302-331 24-54 (263)
357 3tif_A Uncharacterized ABC tra 91.1 0.076 2.6E-06 53.6 2.0 23 304-326 33-55 (235)
358 3i5x_A ATP-dependent RNA helic 91.1 0.84 2.9E-05 51.4 10.9 18 302-319 111-128 (563)
359 2o8b_B DNA mismatch repair pro 91.0 0.64 2.2E-05 56.7 10.4 20 303-322 790-809 (1022)
360 3ly5_A ATP-dependent RNA helic 91.0 0.48 1.6E-05 48.1 8.0 18 303-320 92-109 (262)
361 2p6r_A Afuhel308 helicase; pro 91.0 0.36 1.2E-05 56.4 8.0 19 302-320 40-58 (702)
362 1rj9_A FTSY, signal recognitio 91.0 0.13 4.4E-06 54.1 3.7 26 301-326 101-126 (304)
363 2cbz_A Multidrug resistance-as 90.9 0.079 2.7E-06 53.5 2.0 24 303-326 32-55 (237)
364 2pcj_A ABC transporter, lipopr 90.8 0.082 2.8E-06 52.9 2.0 23 304-326 32-54 (224)
365 3tbk_A RIG-I helicase domain; 90.8 2.2 7.5E-05 47.3 14.0 23 303-325 20-42 (555)
366 1fuu_A Yeast initiation factor 90.7 0.8 2.8E-05 48.4 9.8 55 264-320 19-76 (394)
367 2fwr_A DNA repair protein RAD2 90.4 0.34 1.1E-05 53.4 6.7 33 304-336 110-142 (472)
368 1b0u_A Histidine permease; ABC 90.4 0.096 3.3E-06 53.8 2.0 23 304-326 34-56 (262)
369 1sgw_A Putative ABC transporte 90.4 0.11 3.7E-06 51.8 2.4 23 304-326 37-59 (214)
370 3ice_A Transcription terminati 90.3 0.46 1.6E-05 51.6 7.3 23 304-326 176-198 (422)
371 4edh_A DTMP kinase, thymidylat 90.3 0.2 6.9E-06 49.7 4.3 31 303-333 7-40 (213)
372 3lxw_A GTPase IMAP family memb 90.2 0.36 1.2E-05 48.7 6.2 23 303-325 22-44 (247)
373 1xjc_A MOBB protein homolog; s 90.2 0.17 5.8E-06 48.6 3.5 24 303-326 5-28 (169)
374 3kta_A Chromosome segregation 90.2 0.16 5.5E-06 48.2 3.4 24 304-327 28-51 (182)
375 1mv5_A LMRA, multidrug resista 90.1 0.097 3.3E-06 53.0 1.8 23 304-326 30-52 (243)
376 2d2e_A SUFC protein; ABC-ATPas 90.1 0.13 4.6E-06 52.3 2.8 22 304-325 31-52 (250)
377 2i4i_A ATP-dependent RNA helic 90.1 1.6 5.4E-05 46.7 11.6 55 263-319 12-69 (417)
378 1g6h_A High-affinity branched- 90.1 0.11 3.9E-06 53.0 2.3 29 298-326 27-57 (257)
379 2gks_A Bifunctional SAT/APS ki 90.1 0.5 1.7E-05 53.7 7.8 38 302-339 372-412 (546)
380 1ji0_A ABC transporter; ATP bi 89.9 0.12 4.1E-06 52.3 2.3 23 304-326 34-56 (240)
381 2zu0_C Probable ATP-dependent 89.9 0.13 4.4E-06 53.0 2.6 22 304-325 48-69 (267)
382 2ghi_A Transport protein; mult 89.9 0.11 3.7E-06 53.3 2.0 24 303-326 47-70 (260)
383 1lw7_A Transcriptional regulat 89.9 0.16 5.5E-06 54.4 3.4 27 303-329 171-197 (365)
384 2pze_A Cystic fibrosis transme 89.8 0.13 4.3E-06 51.7 2.4 23 304-326 36-58 (229)
385 2ff7_A Alpha-hemolysin translo 89.8 0.12 4.2E-06 52.5 2.3 23 304-326 37-59 (247)
386 2olj_A Amino acid ABC transpor 89.8 0.11 3.9E-06 53.4 2.0 23 304-326 52-74 (263)
387 1z47_A CYSA, putative ABC-tran 89.8 0.14 4.8E-06 55.0 2.8 23 304-326 43-65 (355)
388 2ixe_A Antigen peptide transpo 89.8 0.11 3.9E-06 53.5 2.0 23 304-326 47-69 (271)
389 3v9p_A DTMP kinase, thymidylat 89.7 0.19 6.5E-06 50.5 3.6 23 304-326 27-49 (227)
390 2f9l_A RAB11B, member RAS onco 89.7 0.17 5.9E-06 48.7 3.2 22 304-325 7-28 (199)
391 2orv_A Thymidine kinase; TP4A 89.7 0.53 1.8E-05 47.5 6.8 90 304-416 21-125 (234)
392 2it1_A 362AA long hypothetical 89.7 0.15 5E-06 55.1 2.9 23 304-326 31-53 (362)
393 1g8f_A Sulfate adenylyltransfe 89.7 0.16 5.5E-06 57.3 3.3 26 303-328 396-421 (511)
394 2yyz_A Sugar ABC transporter, 89.7 0.15 5E-06 55.0 2.8 23 304-326 31-53 (359)
395 2qi9_C Vitamin B12 import ATP- 89.6 0.13 4.5E-06 52.4 2.4 24 304-327 28-51 (249)
396 2qm8_A GTPase/ATPase; G protei 89.6 0.49 1.7E-05 50.3 6.8 23 304-326 57-79 (337)
397 1oix_A RAS-related protein RAB 89.4 0.17 5.8E-06 48.6 2.8 23 304-326 31-53 (191)
398 1g29_1 MALK, maltose transport 89.4 0.16 5.4E-06 55.0 2.8 23 304-326 31-53 (372)
399 2ihy_A ABC transporter, ATP-bi 89.4 0.14 4.8E-06 53.1 2.4 23 304-326 49-71 (279)
400 1vpl_A ABC transporter, ATP-bi 89.4 0.13 4.4E-06 52.7 2.0 23 304-326 43-65 (256)
401 3d31_A Sulfate/molybdate ABC t 89.3 0.13 4.5E-06 55.1 2.2 23 304-326 28-50 (348)
402 2yz2_A Putative ABC transporte 89.3 0.13 4.4E-06 52.9 2.0 23 304-326 35-57 (266)
403 3sop_A Neuronal-specific septi 89.1 0.17 5.8E-06 52.2 2.7 23 304-326 4-26 (270)
404 3h1t_A Type I site-specific re 89.1 0.49 1.7E-05 53.8 6.9 42 274-325 180-221 (590)
405 2nq2_C Hypothetical ABC transp 89.1 0.15 5.2E-06 52.0 2.3 23 304-326 33-55 (253)
406 3dkp_A Probable ATP-dependent 89.0 3.3 0.00011 40.9 12.2 17 303-319 67-83 (245)
407 3fmp_B ATP-dependent RNA helic 89.0 1.3 4.6E-05 48.7 10.1 52 266-319 92-148 (479)
408 1wrb_A DJVLGB; RNA helicase, D 89.0 1.4 4.8E-05 44.0 9.5 18 303-320 61-78 (253)
409 2v6i_A RNA helicase; membrane, 88.9 0.87 3E-05 49.9 8.5 17 303-319 3-19 (431)
410 4a2q_A RIG-I, retinoic acid in 88.8 2.6 8.9E-05 49.9 13.1 23 303-325 264-286 (797)
411 2f1r_A Molybdopterin-guanine d 88.8 0.13 4.4E-06 49.4 1.5 24 303-326 3-26 (171)
412 2db3_A ATP-dependent RNA helic 88.8 1.6 5.5E-05 47.6 10.5 54 263-318 53-109 (434)
413 2pjz_A Hypothetical protein ST 88.7 0.17 5.7E-06 52.1 2.4 23 304-326 32-54 (263)
414 2dyk_A GTP-binding protein; GT 88.7 0.24 8.1E-06 45.2 3.2 22 304-325 3-24 (161)
415 2gk6_A Regulator of nonsense t 88.4 0.21 7.3E-06 57.7 3.2 32 304-335 197-232 (624)
416 3tmk_A Thymidylate kinase; pho 88.4 0.3 1E-05 48.7 3.9 27 303-329 6-32 (216)
417 1oxx_K GLCV, glucose, ABC tran 88.3 0.13 4.6E-06 55.1 1.4 23 304-326 33-55 (353)
418 1gm5_A RECG; helicase, replica 88.3 1.1 3.9E-05 53.0 9.4 34 301-334 388-424 (780)
419 3dz8_A RAS-related protein RAB 88.3 1.5 5.3E-05 41.4 8.8 23 304-326 25-47 (191)
420 2wsm_A Hydrogenase expression/ 88.1 0.39 1.3E-05 46.8 4.5 24 303-326 31-54 (221)
421 3gd7_A Fusion complex of cysti 88.1 0.2 6.7E-06 54.6 2.5 22 304-325 49-70 (390)
422 2wji_A Ferrous iron transport 88.0 0.23 7.9E-06 46.2 2.6 22 304-325 5-26 (165)
423 2zej_A Dardarin, leucine-rich 88.0 0.2 6.7E-06 47.6 2.2 20 305-324 5-24 (184)
424 1kao_A RAP2A; GTP-binding prot 87.9 0.29 9.8E-06 44.7 3.2 22 304-325 5-26 (167)
425 4f4c_A Multidrug resistance pr 87.9 0.46 1.6E-05 59.7 6.0 22 305-326 1108-1129(1321)
426 1z2a_A RAS-related protein RAB 87.8 0.26 9E-06 45.2 2.9 22 304-325 7-28 (168)
427 1nrj_B SR-beta, signal recogni 87.8 0.32 1.1E-05 47.3 3.6 24 303-326 13-36 (218)
428 3fht_A ATP-dependent RNA helic 87.8 1.5 5.1E-05 46.6 9.3 53 266-320 25-82 (412)
429 4a2w_A RIG-I, retinoic acid in 87.7 3.5 0.00012 49.9 13.4 24 303-326 264-287 (936)
430 2ce2_X GTPase HRAS; signaling 87.5 0.27 9.3E-06 44.7 2.8 23 304-326 5-27 (166)
431 1u8z_A RAS-related protein RAL 87.5 0.31 1.1E-05 44.5 3.2 23 303-325 5-27 (168)
432 1ek0_A Protein (GTP-binding pr 87.4 0.31 1.1E-05 44.7 3.2 23 304-326 5-27 (170)
433 1z0j_A RAB-22, RAS-related pro 87.3 0.32 1.1E-05 44.6 3.2 23 304-326 8-30 (170)
434 2nzj_A GTP-binding protein REM 87.3 0.27 9.3E-06 45.5 2.7 22 304-325 6-27 (175)
435 2lna_A AFG3-like protein 2; st 87.2 1.2 4.2E-05 38.7 6.6 55 139-194 14-75 (99)
436 2bbs_A Cystic fibrosis transme 87.2 0.19 6.4E-06 52.5 1.6 29 298-326 58-88 (290)
437 3fho_A ATP-dependent RNA helic 87.2 1.8 6.2E-05 48.3 9.8 19 302-320 158-176 (508)
438 1wms_A RAB-9, RAB9, RAS-relate 87.1 0.33 1.1E-05 45.1 3.2 22 304-325 9-30 (177)
439 2p67_A LAO/AO transport system 87.1 0.89 3E-05 48.3 6.9 25 302-326 56-80 (341)
440 1z08_A RAS-related protein RAB 87.1 0.34 1.2E-05 44.6 3.2 22 304-325 8-29 (170)
441 2dpy_A FLII, flagellum-specifi 87.1 0.47 1.6E-05 52.4 4.8 25 305-329 160-184 (438)
442 2wjg_A FEOB, ferrous iron tran 87.0 0.3 1E-05 46.0 2.8 22 304-325 9-30 (188)
443 1dek_A Deoxynucleoside monopho 86.9 0.3 1E-05 49.6 2.9 28 305-332 4-31 (241)
444 1ky3_A GTP-binding protein YPT 86.9 0.35 1.2E-05 45.0 3.2 23 303-325 9-31 (182)
445 2erx_A GTP-binding protein DI- 86.9 0.32 1.1E-05 44.7 2.9 22 304-325 5-26 (172)
446 2vp4_A Deoxynucleoside kinase; 86.8 0.34 1.2E-05 48.2 3.2 23 303-325 21-43 (230)
447 1g16_A RAS-related protein SEC 86.6 0.32 1.1E-05 44.6 2.8 22 304-325 5-26 (170)
448 2ykg_A Probable ATP-dependent 86.6 3.3 0.00011 47.7 12.0 22 303-324 29-50 (696)
449 3lv8_A DTMP kinase, thymidylat 86.6 0.35 1.2E-05 48.9 3.2 25 302-326 27-51 (236)
450 1r2q_A RAS-related protein RAB 86.6 0.37 1.3E-05 44.1 3.2 22 304-325 8-29 (170)
451 2hxs_A RAB-26, RAS-related pro 86.5 0.37 1.3E-05 44.7 3.2 22 304-325 8-29 (178)
452 3ch4_B Pmkase, phosphomevalona 86.5 0.34 1.2E-05 47.8 3.0 39 300-338 9-48 (202)
453 1c1y_A RAS-related protein RAP 86.5 0.38 1.3E-05 44.0 3.2 22 304-325 5-26 (167)
454 3nh6_A ATP-binding cassette SU 86.4 0.2 6.7E-06 52.8 1.3 24 303-326 81-104 (306)
455 3q85_A GTP-binding protein REM 86.4 0.32 1.1E-05 44.8 2.6 20 305-324 5-24 (169)
456 1svi_A GTP-binding protein YSX 86.4 0.28 9.5E-06 46.6 2.3 24 302-325 23-46 (195)
457 3bc1_A RAS-related protein RAB 86.4 0.37 1.3E-05 45.2 3.2 23 303-325 12-34 (195)
458 2npi_A Protein CLP1; CLP1-PCF1 86.4 0.33 1.1E-05 54.0 3.2 24 303-326 139-162 (460)
459 3e2i_A Thymidine kinase; Zn-bi 86.4 0.73 2.5E-05 46.0 5.3 67 305-373 31-113 (219)
460 3ld9_A DTMP kinase, thymidylat 86.2 0.41 1.4E-05 48.0 3.4 26 302-327 21-46 (223)
461 1r8s_A ADP-ribosylation factor 86.2 0.4 1.4E-05 43.9 3.2 21 305-325 3-23 (164)
462 1ko7_A HPR kinase/phosphatase; 86.1 0.39 1.3E-05 50.7 3.4 28 303-331 145-172 (314)
463 3g5u_A MCG1178, multidrug resi 86.1 0.47 1.6E-05 59.4 4.7 23 304-326 418-440 (1284)
464 2f7s_A C25KG, RAS-related prot 86.1 1.7 6E-05 41.8 7.9 22 304-325 27-48 (217)
465 1oyw_A RECQ helicase, ATP-depe 86.0 1.4 4.6E-05 49.7 8.0 21 303-323 41-61 (523)
466 1knx_A Probable HPR(Ser) kinas 86.0 0.36 1.2E-05 50.8 3.0 28 303-331 148-175 (312)
467 4tmk_A Protein (thymidylate ki 85.9 0.37 1.3E-05 47.9 2.9 23 304-326 5-27 (213)
468 3clv_A RAB5 protein, putative; 85.9 0.42 1.4E-05 45.1 3.2 23 303-325 8-30 (208)
469 3ux8_A Excinuclease ABC, A sub 85.8 1.3 4.5E-05 51.4 8.0 19 304-322 350-368 (670)
470 1z0f_A RAB14, member RAS oncog 85.8 0.42 1.4E-05 44.3 3.2 24 303-326 16-39 (179)
471 4dsu_A GTPase KRAS, isoform 2B 85.8 0.43 1.5E-05 44.8 3.2 23 304-326 6-28 (189)
472 1f2t_A RAD50 ABC-ATPase; DNA d 85.8 0.42 1.4E-05 44.5 3.1 23 304-326 25-47 (149)
473 2wjy_A Regulator of nonsense t 85.8 0.36 1.2E-05 57.4 3.2 31 304-334 373-407 (800)
474 2lkc_A Translation initiation 85.8 0.47 1.6E-05 44.1 3.4 23 303-325 9-31 (178)
475 4ag6_A VIRB4 ATPase, type IV s 85.8 0.64 2.2E-05 50.1 5.0 25 302-326 35-59 (392)
476 2y8e_A RAB-protein 6, GH09086P 85.6 0.39 1.3E-05 44.5 2.8 22 304-325 16-37 (179)
477 2efe_B Small GTP-binding prote 85.6 0.45 1.5E-05 44.3 3.2 22 304-325 14-35 (181)
478 3con_A GTPase NRAS; structural 85.6 0.44 1.5E-05 45.0 3.2 23 304-326 23-45 (190)
479 2a9k_A RAS-related protein RAL 85.6 0.44 1.5E-05 44.5 3.2 22 304-325 20-41 (187)
480 4hlc_A DTMP kinase, thymidylat 85.5 0.61 2.1E-05 45.9 4.3 29 305-333 5-35 (205)
481 2gj8_A MNME, tRNA modification 85.5 0.35 1.2E-05 45.4 2.5 22 304-325 6-27 (172)
482 3q72_A GTP-binding protein RAD 85.5 0.36 1.2E-05 44.3 2.5 21 304-324 4-24 (166)
483 2oil_A CATX-8, RAS-related pro 85.5 0.44 1.5E-05 45.2 3.2 22 304-325 27-48 (193)
484 1upt_A ARL1, ADP-ribosylation 85.5 0.53 1.8E-05 43.3 3.6 23 303-325 8-30 (171)
485 2p5s_A RAS and EF-hand domain 85.4 0.45 1.5E-05 45.6 3.2 24 302-325 28-51 (199)
486 2fn4_A P23, RAS-related protei 85.3 0.41 1.4E-05 44.4 2.8 22 304-325 11-32 (181)
487 3l9o_A ATP-dependent RNA helic 85.3 3.5 0.00012 50.8 11.7 32 303-334 200-234 (1108)
488 3t1o_A Gliding protein MGLA; G 85.3 0.46 1.6E-05 44.8 3.2 23 304-326 16-38 (198)
489 2hf9_A Probable hydrogenase ni 85.2 0.83 2.8E-05 44.6 5.1 24 303-326 39-62 (226)
490 3tw8_B RAS-related protein RAB 85.2 0.43 1.5E-05 44.3 2.9 21 304-324 11-31 (181)
491 2obl_A ESCN; ATPase, hydrolase 85.2 0.56 1.9E-05 50.2 4.1 24 305-328 74-97 (347)
492 1m7b_A RND3/RHOE small GTP-bin 85.1 0.42 1.4E-05 45.1 2.8 23 303-325 8-30 (184)
493 2atv_A RERG, RAS-like estrogen 85.0 0.51 1.7E-05 45.0 3.3 23 303-325 29-51 (196)
494 2oca_A DAR protein, ATP-depend 84.9 1.5 5.1E-05 48.7 7.6 23 303-325 129-151 (510)
495 3g5u_A MCG1178, multidrug resi 84.9 1.9 6.3E-05 54.1 9.2 22 304-325 1061-1082(1284)
496 3hjn_A DTMP kinase, thymidylat 84.9 0.69 2.4E-05 45.1 4.3 30 305-334 3-35 (197)
497 1pui_A ENGB, probable GTP-bind 84.8 0.21 7.3E-06 48.2 0.6 23 303-325 27-49 (210)
498 2bme_A RAB4A, RAS-related prot 84.8 0.44 1.5E-05 44.7 2.8 22 304-325 12-33 (186)
499 2g6b_A RAS-related protein RAB 84.8 0.5 1.7E-05 43.9 3.2 24 303-326 11-34 (180)
500 3kkq_A RAS-related protein M-R 84.7 0.51 1.8E-05 44.2 3.2 22 304-325 20-41 (183)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.9e-84 Score=725.91 Aligned_cols=448 Identities=56% Similarity=0.958 Sum_probs=388.1
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
.+.++|+||+|+++++++|++++.+++++..|..+|.++|+|+||+||||||||++|+++|++++.||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
.|.+..+++.+|..|+..+||||||||+|.++.+++.+.++.+.+..+++++||.+|+++....+++||++||+++.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999888765556677888999999999999887889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
+++|||||++.+.+++|+.++|.+|++.++++..+..++++..++..++|++++||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccC-CCCceeeecCchhhhhccccCHHH
Q 004921 503 SDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRG-QAGGLTFFAPSEERLESGLYSRSY 581 (723)
Q Consensus 503 ~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg-~~~G~~~~~~~~~~~~~~~~t~~~ 581 (723)
.+++++++.+++++...+++.+++.++|||+||+++++.+++.+++.+++|+||| +++||+++.|.++++ ++||.+
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~---~~~~~~ 326 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKY---LVSRNE 326 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CC---SCBHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCccccc---ccCHHH
Confidence 9999999999888777889999999999999999999999999999999999999 999999999987654 789999
Q ss_pred HHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHH
Q 004921 582 LENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMAT 661 (723)
Q Consensus 582 l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~ 661 (723)
++++|+++|||||||+++||+ +||||+|||++||+||+.||++||||+++|+++|....+..|+|.++....+||+++
T Consensus 327 l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~ 404 (476)
T 2ce7_A 327 LLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEV 404 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHH
T ss_pred HHHHHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHH
Confidence 999999999999999999995 899999999999999999999999999999999987777789998877788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcc
Q 004921 662 ADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 715 (723)
Q Consensus 662 ~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~il~~ 715 (723)
+..||+||+++|++||++|++||++||+.|++||++|+|+|+|+++||.+|+..
T Consensus 405 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 405 ASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-81 Score=711.45 Aligned_cols=461 Identities=53% Similarity=0.892 Sum_probs=423.5
Q ss_pred CCCccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh
Q 004921 246 GGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 246 ~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e 325 (723)
++.++|++|+.++.... ++++|+||+|+++++.++++++.+++++..|..++.++|+|+||+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999888766 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC
Q 004921 326 AGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN 405 (723)
Q Consensus 326 ~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~ 405 (723)
++.+|+.++++++.+.+.|....+++.+|+.++...|||+||||||.++..++.+..+.+++..+++++||.+|+++...
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 99999999999999888999899999999999888899999999999988776544455778889999999999999888
Q ss_pred CceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
..++++++||+|+.||++++||||||++|.+++|+.++|.+||+.|+++..+..++++..++..++|++|+||.++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccCCCCceeee
Q 004921 486 AILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFF 565 (723)
Q Consensus 486 ~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~ 565 (723)
+..|.+++...|+.+|+.++++++..+.+++...+++.++++++|||+||+++++++++.++|.++||+||++++||++
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~- 326 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM- 326 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-
Confidence 9999888888999999999999999998888888999999999999999999999999999999999999999999997
Q ss_pred cCc-hhhhhccccCHHHHHHHHHHhhhchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCC
Q 004921 566 APS-EERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGN 644 (723)
Q Consensus 566 ~~~-~~~~~~~~~t~~~l~~~i~v~lgGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~ 644 (723)
|. ++. .++||.+++++|+++||||+||+++||+ +||||++||++||+||+.||++||||+++|++++....+
T Consensus 327 -p~q~~~---~~~t~~~l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~- 399 (499)
T 2dhr_A 327 -PRREDM---LHWSRKRLLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED- 399 (499)
T ss_dssp -HHHTTC---CCCCHHHHHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC-
T ss_pred -cchhhh---hccCHHHHHHHHHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc-
Confidence 65 343 3689999999999999999999999995 899999999999999999999999999999999986555
Q ss_pred CCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHccCc
Q 004921 645 PFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 717 (723)
Q Consensus 645 ~~lg~~~~~~~~~s~~~~~~id~ev~~iL~~a~~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~il~~~~ 717 (723)
.|+| ++. ..+||++++..||+||+++|++||++|++||++|++.|++||++|+|+|+|+++||.+|+....
T Consensus 400 ~~~~-~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~ 470 (499)
T 2dhr_A 400 TYLG-GYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470 (499)
T ss_dssp CSSC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCC
T ss_pred cccc-ccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCC
Confidence 7888 555 6889999999999999999999999999999999999999999999999999999999997643
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-52 Score=453.90 Aligned_cols=252 Identities=38% Similarity=0.708 Sum_probs=242.1
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 445679999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
++|+|+++..++.+|..|+..+||||||||||+++++|..+.++++.+...++++||.+||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999999998776666677888999999999999999999999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ 499 (723)
||||++||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||.++|++|++.|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 004921 500 DEISDALERIIAG 512 (723)
Q Consensus 500 edl~~Al~~~~~g 512 (723)
+||..|+++++..
T Consensus 380 ~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 380 EDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999998753
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-50 Score=445.00 Aligned_cols=254 Identities=37% Similarity=0.670 Sum_probs=243.2
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
.....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34456789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+.++|+|++++.++.+|..|+..+||||||||+|+++.+|..+...++.+...++++||.+||++....+|+||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999997766666778889999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 497 (723)
+.||+||+||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||.++|++|++.|+++++..|
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 004921 498 SKDEISDALERIIAG 512 (723)
Q Consensus 498 ~~edl~~Al~~~~~g 512 (723)
+.+||.+|++++..+
T Consensus 412 t~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 412 TAEDFKQAKERVMKN 426 (437)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC
Confidence 999999999998764
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-50 Score=444.89 Aligned_cols=256 Identities=43% Similarity=0.735 Sum_probs=243.9
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 346789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV 419 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~ 419 (723)
++|+|++++.++.+|..|+..+||||||||+|+++.+|.....+.......++++||.+||++....+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999999988776556667778899999999999999999999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCH
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISK 499 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ 499 (723)
||+||+||||||++|+|++|+.++|.+||+.|+++..+..++|+..||+.|+||||+||.++|++|++.|+++++..++.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcc
Q 004921 500 DEISDALERIIAGPEKK 516 (723)
Q Consensus 500 edl~~Al~~~~~g~~~~ 516 (723)
+||..|+++++.+.++.
T Consensus 441 ~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCcccc
Confidence 99999999998876553
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-49 Score=440.30 Aligned_cols=253 Identities=41% Similarity=0.709 Sum_probs=241.6
Q ss_pred cccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 3456789999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
.++|+|+++..++.+|..|+..+||||||||+|+++.+|.......+.....++++||.+||++....+|+||+|||+|+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 99999999999999999999999999999999999998876655566778899999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEIS 498 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~ 498 (723)
.|||||+||||||++|+|++||.++|.+||+.|+++..+..++|+..+|+.|+||||+||.++|++|++.|++++...|+
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 004921 499 KDEISDALERIIAG 512 (723)
Q Consensus 499 ~edl~~Al~~~~~g 512 (723)
.+||..|++++...
T Consensus 412 ~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 412 PDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998653
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-50 Score=442.76 Aligned_cols=253 Identities=41% Similarity=0.693 Sum_probs=240.5
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
.....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 33456789999999999999999997776 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+.++|+|++++.++.+|..|+..+||||||||+|+++.+|..+..++......++++||.+||++...++|+||+|||+|
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999887765566677888999999999999999999999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 497 (723)
+.||+||+||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||.++|++|++.|.+++...|
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i 410 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSV 410 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHc
Q 004921 498 SKDEISDALERIIA 511 (723)
Q Consensus 498 ~~edl~~Al~~~~~ 511 (723)
+.+||.+|++++..
T Consensus 411 ~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 411 KHEDFVEGISEVQA 424 (434)
T ss_dssp CHHHHHHHHHSCSS
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999988654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-48 Score=433.47 Aligned_cols=252 Identities=38% Similarity=0.633 Sum_probs=240.3
Q ss_pred cccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 3456789999999999999999998886 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC
Q 004921 339 VELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD 418 (723)
Q Consensus 339 ~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~ 418 (723)
.++|+|.++..++.+|..|+..+||||||||+|+++.+|.....+++.+..+++++||.+||++....+|+||+|||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999999877666667788899999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccC-CCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 004921 419 VLDSALLRPGRFDRQVTVD-RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 497 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~-~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 497 (723)
.|||||+||||||+.|+|| +|+.++|..||+.|+++..+..++|+..+|..|+||||+||.++|++|++.|+++++..|
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i 402 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHc
Q 004921 498 SKDEISDALERIIA 511 (723)
Q Consensus 498 ~~edl~~Al~~~~~ 511 (723)
+.+||.+|+.+++.
T Consensus 403 ~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 403 LQSDLEEAYATQVK 416 (428)
T ss_dssp CHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHhhC
Confidence 99999999988754
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.8e-48 Score=396.26 Aligned_cols=205 Identities=40% Similarity=0.625 Sum_probs=162.9
Q ss_pred cCCCcccccccccchhHHHHHHHHHHHHhhhcCCCCCCCceeecccCCCCceeeecCchhhhhccccCHHHHHHHHHHhh
Q 004921 511 AGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVAL 590 (723)
Q Consensus 511 ~g~~~~~~~~~~~~~~~~A~hEaGhalv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~~~~t~~~l~~~i~v~l 590 (723)
.|+++++..+++++++++||||+|||||++++++.+||++|||+|||+++||+++.|.++++ ++||.+|+++|+++|
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~---~~tk~~l~~~i~v~L 78 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKH---IYDKKDLYNKILVLL 78 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CC---CCBHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCccccc---ccCHHHHHHHHHHHH
Confidence 57888888999999999999999999999999999999999999999999999999987654 789999999999999
Q ss_pred hchhhhhhhhCCcccccCccchHHHHHHHHHHHHHHhCCCCCCcceeeCCCCCCCCCCccccccccccHHHHHHHHHHHH
Q 004921 591 GGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVR 670 (723)
Q Consensus 591 gGraAe~~~fg~~~~stGas~Dl~~AT~lA~~mV~~~Gms~~lg~v~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~ 670 (723)
||||||+++||.+.+||||+|||++||+||+.||++||||+++|+++|....+ .||| ++....+||++|+..||.||+
T Consensus 79 gGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~-~flg-~~~~~~~~Se~ta~~iD~Ev~ 156 (238)
T 2di4_A 79 GGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVAN-PFLG-GMTTAVDTSPDLLREIDEEVK 156 (238)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcc-cccc-ccccccccCHHHHHHHHHHHH
Confidence 99999999996556999999999999999999999999999999999986555 7998 666678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHccCcccc
Q 004921 671 ELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 720 (723)
Q Consensus 671 ~iL~~a~~rA~~iL~~~r~~L~~la~~Lle~EtL~g~ei~~il~~~~~~~ 720 (723)
+||++||++|++||++||+.|++||++|+++|+|+++||.+|+....+++
T Consensus 157 ~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~~~ 206 (238)
T 2di4_A 157 RIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIEL 206 (238)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCCCc
Confidence 99999999999999999999999999999999999999999998765543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.7e-44 Score=422.99 Aligned_cols=232 Identities=43% Similarity=0.787 Sum_probs=187.9
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 34678999999999999999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
+|+|++++.++.+|+.|+..+||||||||||+++++|+...+.++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999987654455566778999999999999999999999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 493 (723)
|+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.5e-41 Score=396.82 Aligned_cols=246 Identities=42% Similarity=0.707 Sum_probs=229.1
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.+.++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|+|||||||||||+||+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4579999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
|.|+++..++.+|+.|+..+||||||||||.++++|+.. .++...+++++||.+||++..+.+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 999999999999999999999999999999999988653 33456789999999999999889999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC-------
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL------- 494 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~------- 494 (723)
++|+||||||+.|++++||.++|.+||+.|+++..+..++|+..+|..|+||+|+||.++|++|++.|.++..
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ----------CCCCHHHHHHHHHHHHc
Q 004921 495 ----------KEISKDEISDALERIIA 511 (723)
Q Consensus 495 ----------~~I~~edl~~Al~~~~~ 511 (723)
..++.+|+..|+..+..
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred cccchhhhccceeeHHHHHHHHHhCCC
Confidence 23677888888876544
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=6.7e-38 Score=325.19 Aligned_cols=253 Identities=66% Similarity=1.059 Sum_probs=230.7
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
...+..+|+||+|+++++++|.+++.++.++..|..+|...|+|+||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.+.|.+...++.+|+.+....|+++||||+|.+...++....++..+....+++++..++++....+++||++||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 88888889999999999999999999999999988776555555667778999999999998888889999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~e 500 (723)
|++++|+|||++.+.+++|+.++|.+|++.+++...+..+.++..++..++||+++||.++|++|...|.+++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHcCC
Q 004921 501 EISDALERIIAGP 513 (723)
Q Consensus 501 dl~~Al~~~~~g~ 513 (723)
|+.+|++++..|+
T Consensus 244 ~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 244 EFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987764
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.6e-37 Score=327.29 Aligned_cols=230 Identities=43% Similarity=0.794 Sum_probs=212.0
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.+.++|+||+|++++++.|++.+.+ +++|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4568999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
+.|.....++.+|..++...|+||||||+|.+...++............++++||..|+++....+++||++||+++.||
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 99999999999999999999999999999999987754332223344568899999999988888899999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
++++|+|||++.+++++|+.++|.+|++.+++...+..++++..++..+.||+|+||.++|++|+..|.++
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888878899999999999999999999999999888765
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=323.71 Aligned_cols=245 Identities=40% Similarity=0.705 Sum_probs=207.6
Q ss_pred CCCccccccccchHhHHHHHHHHH-HhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVD-FLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~-~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.++++|+||+|++++|++|++.+. .+++++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 356899999999999999998654 5999999999999999999999999999999999999999999999999998888
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
+.+.....++.+|+.++...||++|+||+|.++..++... .......+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888889999999999888999999999999876654311 1223457899999999998888899999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcC---CCCCccccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhC---
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG---KALAKDVDFEKISRRTP--GFTGADLQNLMNEAAILAARRD--- 493 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~---~~l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~r~~--- 493 (723)
++++||||||+.|++++|+.++|.+||+.++++ ..+..++++..++..+. ||||+||.++|++|++.|.++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 34567899999999755 9999999999999999988752
Q ss_pred --------CCCCCHHHHHHHHHHHH
Q 004921 494 --------LKEISKDEISDALERII 510 (723)
Q Consensus 494 --------~~~I~~edl~~Al~~~~ 510 (723)
...|+.+||.+|+.++.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ 265 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVR 265 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCC
T ss_pred ccccccccCCeecHHHHHHHHHHhc
Confidence 23689999999987754
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-35 Score=312.55 Aligned_cols=250 Identities=46% Similarity=0.790 Sum_probs=233.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..+.++|+||+|+++++++|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45568999999999999999998876 89999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.+.|.....++.+|..++...|+||||||+|.+..++.....++.......+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 88999999999999999999999999999999998776655555667788999999999988888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~e 500 (723)
|++++|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|+++++|.++|++|...|.+++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 004921 501 EISDALERIIA 511 (723)
Q Consensus 501 dl~~Al~~~~~ 511 (723)
|+.+|+.++..
T Consensus 250 d~~~al~~~~~ 260 (285)
T 3h4m_A 250 DFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=313.73 Aligned_cols=256 Identities=52% Similarity=0.869 Sum_probs=204.0
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
+++|+||+|++++|+.|++++.++.+++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCC-CCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCcc
Q 004921 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG-GGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSA 423 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~-~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 423 (723)
.+...++.+|..+....|+||||||+|.+..++..... ..+.+....++.++..+++.....++++|++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 88889999999999989999999999999876543211 11334557889999999988777899999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcccc--HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 004921 424 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVD--FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 424 LlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~d--l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ed 501 (723)
++|+|||+..+++++|+.++|.+|++.+++...+..+.+ +..++..+.|+++++|.+++++|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999988766654433 478999999999999999999999999988888999999
Q ss_pred HHHHHHHHHcCCCcccccc
Q 004921 502 ISDALERIIAGPEKKNAVV 520 (723)
Q Consensus 502 l~~Al~~~~~g~~~~~~~~ 520 (723)
+..|+.++..+..++...+
T Consensus 242 ~~~a~~~~~~~~~~~~~~~ 260 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKIL 260 (262)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHhccChhhhhHhh
Confidence 9999999887765554433
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=8.9e-35 Score=301.14 Aligned_cols=245 Identities=66% Similarity=1.113 Sum_probs=220.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
..+.++|+|++|+++++.++++++..+.++..+...+..+|+|++|+||||||||+|+++++++.+.+++.+++.++.+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 34568999999999999999999998888899999999999999999999999999999999999999999999998887
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+++++.+|++......++++++||+|+.||
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 77877888999999998888999999999999876654323345667788999999999988878899999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE 501 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~ed 501 (723)
++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..++|++++||.++|++|+..|.+++...|+.+|
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~d 248 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999999988888899999
Q ss_pred HHHHH
Q 004921 502 ISDAL 506 (723)
Q Consensus 502 l~~Al 506 (723)
+.+++
T Consensus 249 l~~a~ 253 (254)
T 1ixz_A 249 LEEAA 253 (254)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.3e-34 Score=302.56 Aligned_cols=258 Identities=64% Similarity=1.079 Sum_probs=223.5
Q ss_pred CccccccccccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 248 PMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 248 ~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.+.+..++...... .+.++|+|++|.+++++++++++..+.++..+...+..+|+|++|+||||||||+|++++++..+
T Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 20 AFSFTKSRARVLTE-APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp ------CCCCCBCC-CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cccccccccccccC-CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 45555555444332 36799999999999999999999999889999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc
Q 004921 328 VPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG 407 (723)
Q Consensus 328 ~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ 407 (723)
.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+++++.+|++......
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999998887777778889999999988889999999999998765432223355677889999999999887778
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
++++++||+|+.||++++|++||++.+++++|+.++|.+||+.++++..+..++++..++..++|++++||.++|++|+.
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHH
Q 004921 488 LAARRDLKEISKDEISDAL 506 (723)
Q Consensus 488 ~A~r~~~~~I~~edl~~Al 506 (723)
.|.+++...|+.+|+.+|+
T Consensus 259 ~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 259 LAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHTTCCSBCHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHh
Confidence 9998888889999999875
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=313.15 Aligned_cols=225 Identities=36% Similarity=0.633 Sum_probs=203.3
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-CCceeeechhhHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASEFV 339 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is~s~~~ 339 (723)
..++++|+||+|++++|+.|++.+.+ ++.++.|.. +..+|+|+||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34678999999999999999998876 888888874 35678999999999999999999999999 8999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceEEEEeeCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPD 418 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-~~~~ViVIaaTN~p~ 418 (723)
..+.|..+..++.+|..++..+|+||||||+|.+.++++.. .......++++|+..|+++. ...+++||++||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998876542 34556788999999999986 367899999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
.+|++++| ||++.+++++|+.++|.+|++.+++..... .+.++..|++.+.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877653 5678999999999999999999999999988875
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-34 Score=311.34 Aligned_cols=226 Identities=36% Similarity=0.625 Sum_probs=200.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..++++|+||+|++++|+.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 45678999999999999999998876 778887765 5677899999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceEEEEeeCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDV 419 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-~~~~ViVIaaTN~p~~ 419 (723)
.+.|.....++.+|..++...|+||||||||.+..+++.. .......++++|+..|+++. ...+++||++||+++.
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 9999999999999999999999999999999998776442 23345678899999999884 5678999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 493 (723)
||++++| ||+..+++++|+.++|.+||+.++++.... .+.++..++..+.||+++||.++|++|...|.++.
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877643 56789999999999999999999999998888763
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=9.4e-34 Score=308.82 Aligned_cols=226 Identities=36% Similarity=0.629 Sum_probs=195.1
Q ss_pred ccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
...++++|+||+|++++++.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345678999999999999999998876 788888876 667889999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-CCceEEEEeeCCCC
Q 004921 340 ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNRPD 418 (723)
Q Consensus 340 ~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-~~~ViVIaaTN~p~ 418 (723)
..+.|.....++.+|..++...|+||||||+|.+...++.. .......++++||..|+++.. ..+++||++||+++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999998776542 344567789999999998854 56799999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
.||++++| ||+..+++++|+.++|.+||+.+++..... .+.++..|++.+.||+|+||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877643 5678999999999999999999999999998876
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=9.7e-36 Score=310.34 Aligned_cols=250 Identities=64% Similarity=1.039 Sum_probs=218.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
.+.++|+||+|++++++.|++++.++.+++.|..++...|+|+||+||||||||++|+++|++++.|++.++++++.+.+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCC-CCCCChHHHHHHHHHHHhhcCCCCC-CceEEEEeeCCCCCC
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAG-LGGGNDEREQTINQLLTEMDGFSGN-SGVIVLAATNRPDVL 420 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~-~~~~~~~~~~~ln~LL~~ld~~~~~-~~ViVIaaTN~p~~L 420 (723)
.|.+...++.+|+.+....|+||||||+|.+...+..+ ....+....+.+++|+..+++.... ..++||++||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 88888888899999999899999999999998765321 1112233345678889999877543 458999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHH
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKD 500 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~e 500 (723)
|++++|+|||+..+.+++|+.++|.+||+.++++..+..+.++..++..+.|++++||.++|++|...|.+++...|+.+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~ 244 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHH
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHH
Confidence 99999999999999999999999999999999888877888899999999999999999999999999887777889999
Q ss_pred HHHHHHHHHHcC
Q 004921 501 EISDALERIIAG 512 (723)
Q Consensus 501 dl~~Al~~~~~g 512 (723)
++.+++.+....
T Consensus 245 ~~~~a~~~~~~~ 256 (268)
T 2r62_A 245 HLKEAVERGIAG 256 (268)
T ss_dssp HHHTSCTTCCCC
T ss_pred HHHHHHHHHhhc
Confidence 999988765443
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.5e-33 Score=317.09 Aligned_cols=243 Identities=43% Similarity=0.726 Sum_probs=222.3
Q ss_pred CCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELF 342 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~ 342 (723)
..++|++|+|++.+++.|++.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 457899999999999999998887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
.|.....++.+|..|....|++|||||||.+..+++. ...+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~---~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS---CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc---ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999887653 2345667899999999999888889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC-------
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK------- 495 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~------- 495 (723)
+++|+|||++.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999988888899999999999999999999999999999887644
Q ss_pred ----------CCCHHHHHHHHHHH
Q 004921 496 ----------EISKDEISDALERI 509 (723)
Q Consensus 496 ----------~I~~edl~~Al~~~ 509 (723)
.++.+|+..|+..+
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred ccchhhcccCcCCHHHHHHHHHhC
Confidence 35666776666543
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.7e-32 Score=307.58 Aligned_cols=227 Identities=36% Similarity=0.631 Sum_probs=194.3
Q ss_pred cccCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-CCceeeechhh
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCAASE 337 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is~s~ 337 (723)
....++++|+||+|++++++.|.+.+.+ ++.++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3446779999999999999999998865 778877764 35677999999999999999999999999 89999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-CCceEEEEeeCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-NSGVIVLAATNR 416 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-~~~ViVIaaTN~ 416 (723)
+...+.|.....++.+|..++...|+||||||||.+.+.+... .......++++||..|+++.. ..+++||++||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998776542 344567889999999998863 578999999999
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
++.||++++| ||+..+.+++|+.++|..||+.+++..... .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999876643 5678999999999999999999999999988875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=282.39 Aligned_cols=243 Identities=33% Similarity=0.593 Sum_probs=208.3
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
.++++|+||+|++++++.|++.+.+ +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3568999999999999999998876 77888776654 678999999999999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC--CCceEEEEeeCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--NSGVIVLAATNRPDV 419 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~--~~~ViVIaaTN~p~~ 419 (723)
+.|.....++.+|..+....|+||||||||.+...+.. +.+......+++||..+++... ..+++||++||.++.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 89999999999999999999999999999999876543 2244567789999999998753 467999999999999
Q ss_pred CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-----
Q 004921 420 LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD----- 493 (723)
Q Consensus 420 LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~----- 493 (723)
||++++| ||+..+++++|+.++|.+|++.+++..... .+.++..+++.+.||+++||..+|++|...+.++.
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999988765432 45578999999999999999999999998888743
Q ss_pred -------CCCCCHHHHHHHHHHHHc
Q 004921 494 -------LKEISKDEISDALERIIA 511 (723)
Q Consensus 494 -------~~~I~~edl~~Al~~~~~ 511 (723)
...|+.+||..|+.++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGG
T ss_pred ccccccccCCcCHHHHHHHHHhcCC
Confidence 357899999999988753
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.7e-30 Score=274.69 Aligned_cols=241 Identities=37% Similarity=0.601 Sum_probs=204.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..++++|+||+|++++++.|++.+.. +.+++.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34568999999999999999998876 77787776654 45789999999999999999999999999999999999988
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC---CceEEEEeeCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN---SGVIVLAATNRP 417 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~---~~ViVIaaTN~p 417 (723)
.+.|.+...++.+|..+....|+||||||+|.+...+.... ........+.|+..+++.... .+++||++||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 88888889999999999999999999999999987654321 223456788899999887543 579999999999
Q ss_pred CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC--
Q 004921 418 DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL-- 494 (723)
Q Consensus 418 ~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~-- 494 (723)
+.+|+++++ ||+..+++++|+.++|..|++.+++..... .+.++..+++.+.|+++++|.++|++|+..+.++..
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999988765432 345688999999999999999999999999888642
Q ss_pred ----------CCCCHHHHHHHHHH
Q 004921 495 ----------KEISKDEISDALER 508 (723)
Q Consensus 495 ----------~~I~~edl~~Al~~ 508 (723)
..|+.+|+..|+.+
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTS
T ss_pred hcccccccccCCcCHHHHHHHHHH
Confidence 46899999888754
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.6e-32 Score=328.13 Aligned_cols=232 Identities=43% Similarity=0.787 Sum_probs=206.1
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
..+.++|+|++|++++|+.|.+++.+ ++.+..|..++..+++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 44578999999999999999998886 78888999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
.|+|..+..++.+|+.++...||||||||||.++..++...+........++++||.+||++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988776533333446678999999999999888899999999999999
Q ss_pred CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 004921 421 DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 493 (723)
Q Consensus 421 D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 493 (723)
|++++|||||++.|++++|+.++|.+||+.++++..+..++++..+++.+.|||++||.++|++|...|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888889999999999999999999999999999998765
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=278.93 Aligned_cols=242 Identities=36% Similarity=0.622 Sum_probs=198.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
...+++|+||+|++.+++.|.+.+.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34568999999999999999998876 66777777665 45789999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC--CCceEEEEeeCCCC
Q 004921 341 LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG--NSGVIVLAATNRPD 418 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~--~~~ViVIaaTN~p~ 418 (723)
.+.|.....++.+|..++...|+||||||||.++..+... ........++.|+..+++... ..+++||++||+++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 9999999999999999999999999999999998765432 233456788899999998765 46799999999999
Q ss_pred CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh-----
Q 004921 419 VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARR----- 492 (723)
Q Consensus 419 ~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~----- 492 (723)
.||++++| ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|..+++.|...+.++
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999 999999999999999999999988764332 3456889999999999999999999999998887
Q ss_pred -------CCCCCCHHHHHHHHHHH
Q 004921 493 -------DLKEISKDEISDALERI 509 (723)
Q Consensus 493 -------~~~~I~~edl~~Al~~~ 509 (723)
....|+.+||..++.+.
T Consensus 342 ~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 342 VKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp --CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhccchhhcCCcCHHHHHHHHHHc
Confidence 34578999999998764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.4e-29 Score=268.81 Aligned_cols=229 Identities=19% Similarity=0.257 Sum_probs=163.5
Q ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHH----HcCCCeEEEEcCccc
Q 004921 297 LGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA----KSKAPCIVFIDEIDA 372 (723)
Q Consensus 297 ~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A----~~~aP~ILfIDEiD~ 372 (723)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred hhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCH
Q 004921 373 VGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV 441 (723)
Q Consensus 373 l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~ 441 (723)
++++++.. .........+.+.|++.||+.. ...+++||+|||+++.||++++|||||++.+. .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98754321 1112234457788888887443 45679999999999999999999999999887 4799
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 004921 442 AGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNL-------MNEAAILAARRDLKEISKDEISDALERIIAGPE 514 (723)
Q Consensus 442 ~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~l-------v~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~ 514 (723)
++|.+|++.++.. .+++...++..+.||++++|..+ +.++.....++ ...+.+.. +++...
T Consensus 188 ~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~~---~~~~~~- 255 (293)
T 3t15_A 188 EDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIGD---KLLNSF- 255 (293)
T ss_dssp HHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCHH---HHTSCS-
T ss_pred HHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHH---HHHcCC-
Confidence 9999999988864 35678899999999999988642 11111111111 11111111 122222
Q ss_pred cccccccccchhHHHHHHHHHHHHhh
Q 004921 515 KKNAVVSDEKKKLVAYHEAGHALVGA 540 (723)
Q Consensus 515 ~~~~~~~~~~~~~~A~hEaGhalv~~ 540 (723)
.....+.+.+..+.++||+||+++..
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22334556678899999999999874
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=3.5e-27 Score=282.02 Aligned_cols=229 Identities=45% Similarity=0.748 Sum_probs=212.3
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
...++|+||+|++++++.|++.+.. +.+++.|..++...++++||+||||||||++|+++|++++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3468999999999999999999987 999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD 421 (723)
+.|.....++.+|..+....|++|||||+|.+..+++. ........++++|+..+++......+++|++||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 89999999999999999999999999999999887653 234456778899999999998888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 004921 422 SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 422 ~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 494 (723)
+++.++|||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.|++++++..++++|+..+.++..
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999998888888999999999999999999999999988877643
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.4e-25 Score=252.11 Aligned_cols=205 Identities=22% Similarity=0.308 Sum_probs=146.3
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVE 340 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~~ 340 (723)
.+...|++++|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4456799999999999999998877643 445678999999999999999999999999 9999999999999
Q ss_pred HHhhhhhhHHHHHHHHH---HcCCCeEEEEcCccchhhhcCCCCCCCCh-HHH---------------HHHHHHHHhhc-
Q 004921 341 LFVGVGASRVRDLFEKA---KSKAPCIVFIDEIDAVGRQRGAGLGGGND-ERE---------------QTINQLLTEMD- 400 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A---~~~aP~ILfIDEiD~l~~~r~~~~~~~~~-~~~---------------~~ln~LL~~ld- 400 (723)
.+.|..+. ++++|..| +...||||||||+|.++++|+....++.. ... ...+.++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 78889999999999999887543211111 000 12234556654
Q ss_pred -CCCCCCceEEEEeeCCCCCCCccccCCCCccc--ccccCCCC--HHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCH
Q 004921 401 -GFSGNSGVIVLAATNRPDVLDSALLRPGRFDR--QVTVDRPD--VAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTG 475 (723)
Q Consensus 401 -~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~--~I~v~~Pd--~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sg 475 (723)
+......++|++|||+++.+|++++||||||+ .+.++.|+ .++|.+|++.+.. .|+..++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33444456667999999999999999999999 66777774 4678888765542 268899999999 9
Q ss_pred HHHHHHHHH
Q 004921 476 ADLQNLMNE 484 (723)
Q Consensus 476 adL~~lv~~ 484 (723)
+|+.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=3.6e-22 Score=211.65 Aligned_cols=226 Identities=18% Similarity=0.225 Sum_probs=173.4
Q ss_pred ccc-ccccchHhHHHHHHHHHHhcCchhhhhhCCCCC---cceEEeCCCCCcHHHHHHHHHHhc-------CCceeeech
Q 004921 267 TFA-DVAGADQAKLELQEVVDFLKNPDKYTALGAKIP---KGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAA 335 (723)
Q Consensus 267 ~f~-dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p---~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~is~ 335 (723)
.++ +|+|++++|+.|.+++..+..+..+...|...+ .++||+||||||||++|+++|+++ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 799999999999999988666777777776544 469999999999999999999987 349999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 336 SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 336 s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
+++...+.|.....++.+|..+ .++||||||+|.+...++. +......++.|+..|+.. ..++++|++||
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~ 177 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGY 177 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEEC
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 9998888888888889999887 3679999999999754432 223456788888888853 45678899998
Q ss_pred CCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHhh-------CCCCCHHHHHHHH
Q 004921 416 RPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-VDFEKISRR-------TPGFTGADLQNLM 482 (723)
Q Consensus 416 ~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-~dl~~La~~-------t~G~sgadL~~lv 482 (723)
.++ .++|+|++ ||+.++.|++|+.+++.+|++.+++.....-+ ..+..++.. .+..+++++.+++
T Consensus 178 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 178 ADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 754 25799999 99999999999999999999999875544322 224455554 3444799999999
Q ss_pred HHHHHHHHHh----CCCCCCHHHHHH
Q 004921 483 NEAAILAARR----DLKEISKDEISD 504 (723)
Q Consensus 483 ~~A~~~A~r~----~~~~I~~edl~~ 504 (723)
+.|...+..+ ....++.+++..
T Consensus 256 ~~a~~~~~~r~~~~~~~~~~~~~l~~ 281 (309)
T 3syl_A 256 DRARLRQANRLFTASSGPLDARALST 281 (309)
T ss_dssp HHHHHHHHHHHHHC---CEEHHHHHE
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHhh
Confidence 9998766554 334566666543
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=3.1e-21 Score=209.49 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=164.9
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC--CceeeechhhHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVEL 341 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~~~~~ 341 (723)
+..+|++++|.+.+++.+..+...+... ..+++++||+||||||||++|+++|++++ .|++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776542 23468999999999999999999999987 48888887553211
Q ss_pred -------------------------------------------------HhhhhhhHHHHHHHHHHc---------CCCe
Q 004921 342 -------------------------------------------------FVGVGASRVRDLFEKAKS---------KAPC 363 (723)
Q Consensus 342 -------------------------------------------------~~G~~~~~vr~lF~~A~~---------~aP~ 363 (723)
..|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 112224456666655543 1278
Q ss_pred EEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee-----------CCCCCCCccccCCCCccc
Q 004921 364 IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT-----------NRPDVLDSALLRPGRFDR 432 (723)
Q Consensus 364 ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT-----------N~p~~LD~aLlrpgRfd~ 432 (723)
||||||+|.+.. ..++.|+..++... ..++++++. |.+..+++++++ ||..
T Consensus 192 vl~IDEi~~l~~--------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLDI--------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSBH--------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccCh--------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 999999999842 35667777776432 235555443 347789999999 8866
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 433 QVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 433 ~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
+.+++|+.+++.+|++.++...... .+..+..+++.+.+.+++++.++++.|...|..++...|+.+++.+++...
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 8999999999999999887653332 233478888888856999999999999999999998999999999998753
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.84 E-value=7.9e-20 Score=196.41 Aligned_cols=216 Identities=21% Similarity=0.234 Sum_probs=166.5
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL 341 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~ 341 (723)
...+.+|++++|.+.+++.+.+.+...+. ....+.++||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--
Confidence 34456899999999999999888876432 123467899999999999999999999999999999987542
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC----------------C
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG----------------N 405 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~----------------~ 405 (723)
....+...+.. ...+++|||||||.+.. ..++.|+..++.... .
T Consensus 93 ----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 ----KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ----SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ----chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 12233333332 34578999999999842 245556666554321 1
Q ss_pred CceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHH
Q 004921 406 SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNE 484 (723)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 484 (723)
.++++|++||....++++|++ ||+..+.+++|+.+++..+++.+++..... .+..+..++..+. .+++++.++++.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 248999999999999999999 999999999999999999999888655432 2233567777555 589999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 485 AAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 485 A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
+...+...+...|+.+++..++...
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHHHh
Confidence 9888887777889999999988764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=4.1e-19 Score=189.21 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=161.0
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHh
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFV 343 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~ 343 (723)
.+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3458999999999999988877654321 134678999999999999999999999999999999876522
Q ss_pred hhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC----------------CCCc
Q 004921 344 GVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS----------------GNSG 407 (723)
Q Consensus 344 G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~----------------~~~~ 407 (723)
...+...|..+ ...+++|||||+|.+... ..+.|+..++... ...+
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11222223221 145789999999988431 2334444443221 1135
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAA 486 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~ 486 (723)
+++|++||.+..+++++++ ||+.++.+++|+.+++.++++.++...... .+..+..++..+.| +++++.++++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 7899999999999999998 998899999999999999999888654432 22346778888865 8899999999987
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH
Q 004921 487 ILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 487 ~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
..+...+...|+.+++..++...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 77666666789999999888764
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=1.1e-19 Score=191.78 Aligned_cols=236 Identities=26% Similarity=0.358 Sum_probs=162.4
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhh-CCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-HHhhh
Q 004921 269 ADVAGADQAKLELQEVVDF-LKNPDKYTAL-GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGV 345 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~-g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~~~G~ 345 (723)
++|+|++++++.|...+.. +........+ ....|.++||+||||||||++|+++|+.++.+++.++++++.+ .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999877654 2221111111 1245789999999999999999999999999999999998765 44443
Q ss_pred h-hhHHHHHHHHH-----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEE
Q 004921 346 G-ASRVRDLFEKA-----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVL 411 (723)
Q Consensus 346 ~-~~~vr~lF~~A-----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVI 411 (723)
. ...+++++..+ ....++||||||+|.+...... .+.......+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 2 34566666532 1123689999999999765432 1222333445788888887542 23467888
Q ss_pred Ee----eCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-------------cCCCC-CccccHHHHHhhCC--
Q 004921 412 AA----TNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-------------RGKAL-AKDVDFEKISRRTP-- 471 (723)
Q Consensus 412 aa----TN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l-------------~~~~l-~~d~dl~~La~~t~-- 471 (723)
++ ++.+..+++++++ ||+..+.|++|+.+++.+|++.++ .+..+ -.+..+..+++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 4567789999998 999899999999999999998311 12111 12223566666652
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhCC----C--CCCHHHHHHHHHH
Q 004921 472 -----GFTGADLQNLMNEAAILAARRDL----K--EISKDEISDALER 508 (723)
Q Consensus 472 -----G~sgadL~~lv~~A~~~A~r~~~----~--~I~~edl~~Al~~ 508 (723)
+.+.+++.++++.+...+..+.. . .|+.+++.+++..
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 46899999999988654432221 1 3888998888754
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=3.8e-20 Score=205.58 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=81.6
Q ss_pred cccccchHhHHHHHHHHHH-hcCchhhhhhCCC-CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH-HHhhh
Q 004921 269 ADVAGADQAKLELQEVVDF-LKNPDKYTALGAK-IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE-LFVGV 345 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~-l~~~~~~~~~g~~-~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~-~~~G~ 345 (723)
++|+|++++|+.|...+.. ++.+..+..++.. .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3689999999999887754 4444444444433 5789999999999999999999999999999999999888 48885
Q ss_pred -hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe-eCCCCCCCcc
Q 004921 346 -GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA-TNRPDVLDSA 423 (723)
Q Consensus 346 -~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~a 423 (723)
.+..++.+|..+... +++||+|.+.... ......+++++||.+||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788999999998765 3589988875322 2234568999999999999776654 454 9999999999
Q ss_pred ccCCCCcccccccCCCCHH-HHHHHHH
Q 004921 424 LLRPGRFDRQVTVDRPDVA-GRVKILQ 449 (723)
Q Consensus 424 LlrpgRfd~~I~v~~Pd~~-~R~~Il~ 449 (723)
|+||||||+.|++++|+.. .|.+|+.
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999987 7888875
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=1.4e-18 Score=189.12 Aligned_cols=220 Identities=23% Similarity=0.303 Sum_probs=152.1
Q ss_pred cccchHhHHHHHHHHHH-hcCchhh-h-hhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH-Hhhhh
Q 004921 271 VAGADQAKLELQEVVDF-LKNPDKY-T-ALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVG 346 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~-l~~~~~~-~-~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~-~~G~~ 346 (723)
|+|++++++.+...+.. ++..... . ......++++||+||||||||++|+++|+.++.||+.++++++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 69999999999887743 2111100 0 0011256799999999999999999999999999999999988753 77765
Q ss_pred -hhHHHHHHHHH----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC------------------
Q 004921 347 -ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS------------------ 403 (723)
Q Consensus 347 -~~~vr~lF~~A----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~------------------ 403 (723)
...++.+|..+ ....++||||||+|.+...+.....+.+.....+++.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677787765 3345789999999999877655433344444568999999998431
Q ss_pred -CCCceEEEEeeCCC----------CC-----------------------------------CCccccCCCCcccccccC
Q 004921 404 -GNSGVIVLAATNRP----------DV-----------------------------------LDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 404 -~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlrpgRfd~~I~v~ 437 (723)
..+++++|+++|.. .. ++|+|+. ||+.++.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 22345566666642 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCCCC---ccccHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHh
Q 004921 438 RPDVAGRVKILQV----HS-------RGKALA---KDVDFEKISR--RTPGFTGADLQNLMNEAAILAARR 492 (723)
Q Consensus 438 ~Pd~~~R~~Il~~----~l-------~~~~l~---~d~dl~~La~--~t~G~sgadL~~lv~~A~~~A~r~ 492 (723)
+|+.+++.+|+.. .+ ...... .+..+..|+. ..+.+..++|+++++++...+..+
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999875 11 111111 1122455554 345567788888888887666554
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=3e-19 Score=204.84 Aligned_cols=222 Identities=21% Similarity=0.287 Sum_probs=150.2
Q ss_pred ccccccccchHhHHHHHHHHHHhc-CchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH----
Q 004921 266 VTFADVAGADQAKLELQEVVDFLK-NPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE---- 340 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~-~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~---- 340 (723)
.-.+|++|++++++.+.+.+..-. +.. . .+..+||+||||||||++|+++|+.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 456789999999999877654311 111 1 3457999999999999999999999999999998876543
Q ss_pred -----HHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCC----------
Q 004921 341 -----LFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGN---------- 405 (723)
Q Consensus 341 -----~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~---------- 405 (723)
.+.|.....+...|..+....| ||||||||.+...+. ....+.||..||.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 4566666777888888876665 999999999975432 12556777777643211
Q ss_pred ---CceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc-----CCCCC------ccccHHHHHh-hC
Q 004921 406 ---SGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR-----GKALA------KDVDFEKISR-RT 470 (723)
Q Consensus 406 ---~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~-----~~~l~------~d~dl~~La~-~t 470 (723)
.++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++. ...+. .+..+..++. .+
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 568999999999999999999 995 799999999999999998762 12221 1222455444 45
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCCCCCHHHHHHHHHH
Q 004921 471 PGFTGADLQNLMNEAAILAARR------DLKEISKDEISDALER 508 (723)
Q Consensus 471 ~G~sgadL~~lv~~A~~~A~r~------~~~~I~~edl~~Al~~ 508 (723)
+....++|++.+..++..+..+ ....|+.+++.+++..
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 4456677776666655554433 2345888998888744
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=2.4e-18 Score=179.50 Aligned_cols=204 Identities=19% Similarity=0.266 Sum_probs=142.1
Q ss_pred ccccccchHhHHHHHH----HHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH-HHH
Q 004921 268 FADVAGADQAKLELQE----VVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV-ELF 342 (723)
Q Consensus 268 f~dv~G~~~~k~~L~e----iv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~-~~~ 342 (723)
...++|.+...+.+.+ ++..++ ..+...++++||+||||||||++|+++|++.+.+|+.+++++.. ...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 4567888776655554 333332 22346678999999999999999999999999999999876521 111
Q ss_pred hhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-CCCceEEEEeeCCCCCCC
Q 004921 343 VGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-GNSGVIVLAATNRPDVLD 421 (723)
Q Consensus 343 ~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-~~~~ViVIaaTN~p~~LD 421 (723)
.+.....++.+|..+....+++|||||+|.+...+..+ .......++.|+..+++.. ....++||++||.++.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 22334567889999988889999999999997654321 1223456666777777654 345688999999999888
Q ss_pred c-cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCC----CHHHHHHHHHHHH
Q 004921 422 S-ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGF----TGADLQNLMNEAA 486 (723)
Q Consensus 422 ~-aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~----sgadL~~lv~~A~ 486 (723)
+ .+.+ ||+..+.+|+++. |.+|.+...+...+ .+.++..+++.+.|+ +.+++.++++.|.
T Consensus 182 ~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 182 EMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp HTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred hhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 8 5555 9998888866554 33344333322233 344678888888886 6777777777663
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=6.2e-18 Score=189.10 Aligned_cols=221 Identities=16% Similarity=0.252 Sum_probs=155.2
Q ss_pred CCccccccc-cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 264 TGVTFADVA-GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 264 ~~~~f~dv~-G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
+..+|++++ |..... .+..+......+. . +.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 346899987 644332 2233333333321 2 6789999999999999999999988 88999999998
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+...+.+.........|.......++||||||+|.+..++ .....|+..++.....+..+||++.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT------------GVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH------------HHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 8766554333222233444444368999999999985321 1233444444433334455666655555
Q ss_pred CC---CCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcC--CCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 418 DV---LDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRG--KALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 418 ~~---LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~--~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
.. +++++++ ||. ..+.+++|+.++|.+|++..++. ..++++ .+..++..+.| +.+++.++++.+...|.
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 54 8899998 775 78999999999999999988753 334333 36888888876 99999999999988877
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 004921 491 RRDLKEISKDEISDALERII 510 (723)
Q Consensus 491 r~~~~~I~~edl~~Al~~~~ 510 (723)
..+ ..|+.+++.+++....
T Consensus 315 ~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 315 TTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HSS-SCCCHHHHHHHTSTTT
T ss_pred HhC-CCCCHHHHHHHHHHHh
Confidence 655 4799999999987654
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.75 E-value=2e-17 Score=179.33 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=161.6
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechh
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAAS 336 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s 336 (723)
..+++++|.++..+.|.+.+.... ....+++++|+||||||||++++++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 345889999988777766554321 12346789999999999999999999988 8899999976
Q ss_pred hHHH------HHh----------hhhh-hHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 337 EFVE------LFV----------GVGA-SRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 337 ~~~~------~~~----------G~~~-~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
...+ ... |... .....++..... ..|++|||||+|.+...+ .....+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 4221 111 1112 223444444433 348899999999996431 134577777777
Q ss_pred hcCCCCCCceEEEEeeCCC---CCCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHhhC
Q 004921 399 MDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRT 470 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRfd~-~I~v~~Pd~~~R~~Il~~~l~~----~~l~~d~dl~~La~~t 470 (723)
++......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.+++. ..+. +..+..+++.+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHH
Confidence 7654324578999999987 678999998 8875 8999999999999999988753 2332 23356677776
Q ss_pred C---CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 471 P---GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 471 ~---G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
. | +++.+.++++.|...|..++...|+.+++..++....
T Consensus 236 ~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 236 AREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 6 5 8899999999999888887888899999999988763
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=3.9e-18 Score=182.19 Aligned_cols=208 Identities=18% Similarity=0.210 Sum_probs=142.6
Q ss_pred ccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 257 KFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 257 ~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
..+.....+.+|++++|++++++.|++.+.. ...|..+|++||||||||++|+++|++++.++++++++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 3455556678999999999999888877661 24567789999999999999999999999999999987
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 337 EFVELFVGVGASRVRDLFEKAKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
+.. ...++..+..... ..++||||||+|.+.. ....+.|+..++... .++.+|
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~~--~~~~iI 140 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAYS--SNCSII 140 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHHG--GGCEEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhCC--CCcEEE
Confidence 642 2334444443322 2568999999999851 124455666665432 456888
Q ss_pred EeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHh-------c--CCCCCccccHHHHHhhCCCCCHHHHHHHH
Q 004921 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHS-------R--GKALAKDVDFEKISRRTPGFTGADLQNLM 482 (723)
Q Consensus 412 aaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l-------~--~~~l~~d~dl~~La~~t~G~sgadL~~lv 482 (723)
++||.+..+++++++ ||. .+.|++|+.++|.+|++.+. + +..+.+...+..++..+.| +.+++.+.+
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L 216 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGEL 216 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHH
Confidence 899999999999999 884 79999999999877655432 2 2333221346778888765 666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 004921 483 NEAAILAARRDLKEISKDEISDALE 507 (723)
Q Consensus 483 ~~A~~~A~r~~~~~I~~edl~~Al~ 507 (723)
+.++ ....|+.+++.+++.
T Consensus 217 ~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 217 DSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHG------GGTCBCC--------
T ss_pred HHHh------ccCCCCHHHHHHHhC
Confidence 6553 234588888777654
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=1.7e-17 Score=189.32 Aligned_cols=230 Identities=18% Similarity=0.258 Sum_probs=151.9
Q ss_pred cccccccCCCccccccccchHhHHHHHHHHHHhc--CchhhhhhCC---CCCcceEEeCCCCCcHHHHHHHHHHhcCCce
Q 004921 256 SKFQEVPETGVTFADVAGADQAKLELQEVVDFLK--NPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAVAGEAGVPF 330 (723)
Q Consensus 256 ~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~--~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAralA~e~~~p~ 330 (723)
..+|.....+.+|+|++|.+++++.|.+.+.... .+..|...|. ..++++||+||||||||++|+++|++++.++
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 4566666777899999999999988888776422 1222333333 3568999999999999999999999999999
Q ss_pred eeechhhHHHHHhhhhh-------hHHHHHHHHH-----HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHh
Q 004921 331 FSCAASEFVELFVGVGA-------SRVRDLFEKA-----KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTE 398 (723)
Q Consensus 331 i~is~s~~~~~~~G~~~-------~~vr~lF~~A-----~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ 398 (723)
+.++++++......... ..++.+|..+ ....++||||||+|.+..... ..++.|+..
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~ 174 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQF 174 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHHH
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHHH
Confidence 99999876543221110 1133444444 235679999999999964311 134455555
Q ss_pred hcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhc--CCCCCccccHHHHHhhCCCCCHH
Q 004921 399 MDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR--GKALAKDVDFEKISRRTPGFTGA 476 (723)
Q Consensus 399 ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~--~~~l~~d~dl~~La~~t~G~sga 476 (723)
++. ....+++++++.....+++ +. |+...+.|++|+.+++.++++..+. +..++++ .+..+++.+.| +.+
T Consensus 175 l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-diR 246 (516)
T 1sxj_A 175 CRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-DIR 246 (516)
T ss_dssp HHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-CHH
T ss_pred HHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHH
Confidence 543 2334555555444444543 44 4456899999999999999987664 3344433 47888888876 556
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 477 DLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 477 dL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
.+.++++.+ +. ....|+.+++.+++...
T Consensus 247 ~~i~~L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 247 QVINLLSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHHTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 655555443 22 34568888887776643
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=2.3e-17 Score=184.75 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=148.6
Q ss_pred CCccccccccchHhH---HHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 264 TGVTFADVAGADQAK---LELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k---~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
.+.+|++++|+++++ ..|+..+..- ...++||+||||||||++|+++++.++.+|+.+++..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 346899999999998 4555554431 1257999999999999999999999999999998743
Q ss_pred HHhhhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC-
Q 004921 341 LFVGVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN- 415 (723)
Q Consensus 341 ~~~G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN- 415 (723)
.+...++.+|..+.. ..++||||||||.+... .++.|+..++. ..+++|++|+
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCC
Confidence 233456666666553 46799999999998432 33456666663 4467777663
Q ss_pred -CCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-------CC-CccccHHHHHhhCCCCCHHHHHHHHHHHH
Q 004921 416 -RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-------AL-AKDVDFEKISRRTPGFTGADLQNLMNEAA 486 (723)
Q Consensus 416 -~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-------~l-~~d~dl~~La~~t~G~sgadL~~lv~~A~ 486 (723)
....++++|++ |+. ++.+++|+.+++..+++.++... .+ -.+..+..+++.+.| +.+++.++++.+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 34579999999 775 78899999999999999888652 11 122246777888655 8999999999987
Q ss_pred HHHHHh--CCCCCCHHHHHHHHHHH
Q 004921 487 ILAARR--DLKEISKDEISDALERI 509 (723)
Q Consensus 487 ~~A~r~--~~~~I~~edl~~Al~~~ 509 (723)
..+... +...|+.+++.+++.+.
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HhcccccCCCCccCHHHHHHHHhhh
Confidence 665322 34579999999887543
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=5.3e-17 Score=173.66 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=134.5
Q ss_pred CCccccccc-cch--HhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh
Q 004921 264 TGVTFADVA-GAD--QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (723)
Q Consensus 264 ~~~~f~dv~-G~~--~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~ 337 (723)
+..+|++++ |.. .+...++.++ ..+. ..+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 346899987 533 3333333332 2221 245789999999999999999999988 89999999998
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 338 FVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+...+.+.........|..... .+++|||||+|.+..++ . ....++..++.....+..+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~---~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------R---TQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------H---HHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------H---HHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 8776555433322233333332 37899999999985321 1 222333333322223456777777776
Q ss_pred C---CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 418 D---VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 418 ~---~LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
. .++++|++ ||+ ..+.+++ +.+++.+|++.++....+. ++..+..++..+ | +.+++.++++.+...
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 6 68999998 886 6789999 9999999999888643332 223367888888 4 899999999987654
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.2e-16 Score=158.51 Aligned_cols=202 Identities=21% Similarity=0.208 Sum_probs=144.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhh
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASE 337 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~ 337 (723)
..+.+|++++|.++.++.|.+.+..- .+.+++|+||||||||++++++++++ ..+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 44578999999999888877766421 12359999999999999999999875 45677777654
Q ss_pred HHHHHhhhhhhHHHHHHHHHH------cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 338 FVELFVGVGASRVRDLFEKAK------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 338 ~~~~~~G~~~~~vr~lF~~A~------~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
.... ..++..+.... ...+++|+|||+|.+... ..+.|+..++.. ..++.+|
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHHHHHT--TTTEEEE
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHHHHhc--CCCCeEE
Confidence 3221 12222222221 246799999999998431 344455555532 3467888
Q ss_pred EeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 412 AATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 412 aaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
++||.++.+++++.+ ||. .+.+++|+.+++.++++.++...... .+..+..++..+.| +++.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 899999999999998 887 89999999999999999877533222 22346677777765 8888888888776443
Q ss_pred HhCCCCCCHHHHHHHHH
Q 004921 491 RRDLKEISKDEISDALE 507 (723)
Q Consensus 491 r~~~~~I~~edl~~Al~ 507 (723)
+.|+.+++.+++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 6899999998874
No 48
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.2e-16 Score=171.65 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=155.0
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----------CCceeeech
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----------GVPFFSCAA 335 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----------~~p~i~is~ 335 (723)
..++++|.++..+.|.+.+..... ...+++++|+||||||||++|+++++++ +.++++++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 348899999999888877764322 1346789999999999999999999987 899999998
Q ss_pred hhHH-H------HHh-----------hhh-hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHH-HHHH
Q 004921 336 SEFV-E------LFV-----------GVG-ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQT-INQL 395 (723)
Q Consensus 336 s~~~-~------~~~-----------G~~-~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~-ln~L 395 (723)
.... . ... +.. ...+..++..+... ++||||||+|.+..... ... +..|
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~----------~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG----------GDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT----------SHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC----------CceeHHHH
Confidence 7543 1 111 111 12244444444444 34999999999965321 123 5555
Q ss_pred HHhhcCCCCCCceEEEEeeCCC---CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHh
Q 004921 396 LTEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISR 468 (723)
Q Consensus 396 L~~ld~~~~~~~ViVIaaTN~p---~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~----~~l~~d~dl~~La~ 468 (723)
+... .++.+|++||.+ +.+++++++ ||...+.+++|+.+++.+|++.+++. ..+. +..+..+++
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~ 229 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAA 229 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHH
Confidence 5433 678899999987 678999988 88889999999999999999988752 2232 223566777
Q ss_pred hCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 469 RTP--GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 469 ~t~--G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
.+. ..+.+.+.++++.|...|. +...|+.+++..++....
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 665 1378888899999887765 557899999999988763
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.70 E-value=9.4e-17 Score=172.13 Aligned_cols=213 Identities=19% Similarity=0.152 Sum_probs=148.4
Q ss_pred cccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH--HHHHhh
Q 004921 267 TFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF--VELFVG 344 (723)
Q Consensus 267 ~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~--~~~~~G 344 (723)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++... .....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467899999988776654432 2579999999999999999999999999998887311 111222
Q ss_pred hhhhH-HHHHHHHHHcCC---CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC---------CCCCceEEE
Q 004921 345 VGASR-VRDLFEKAKSKA---PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF---------SGNSGVIVL 411 (723)
Q Consensus 345 ~~~~~-vr~lF~~A~~~a---P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~---------~~~~~ViVI 411 (723)
..... ....|. .... .+||||||+|.+.+ ..++.|+..|+.. .....+++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11000 000000 0111 37999999998733 2455555555432 124467888
Q ss_pred EeeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC------------------------CCcccc
Q 004921 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA------------------------LAKDVD 462 (723)
Q Consensus 412 aaTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~------------------------l~~d~d 462 (723)
+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... ++++ .
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~ 231 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES-L 231 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-H
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-H
Confidence 8888554 38999999 9998999999999999999998875421 1111 1
Q ss_pred HHHHHhh-------------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 004921 463 FEKISRR-------------------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (723)
Q Consensus 463 l~~La~~-------------------t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g 512 (723)
+..++.. ..|.|++.+.++++.|...|..+++..++.+|+.+++..++..
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 2233221 1256999999999999999998898899999999999988754
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.70 E-value=1.4e-16 Score=171.29 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=141.0
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-------Cce------
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-------VPF------ 330 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-------~p~------ 330 (723)
++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++ .+|
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4578999999999876543221 1 11 134699999999999999999999886 232
Q ss_pred --------------------eeechhhHHHHHhhhhhhHHHHHHHHHH---------cCCCeEEEEcCccchhhhcCCCC
Q 004921 331 --------------------FSCAASEFVELFVGVGASRVRDLFEKAK---------SKAPCIVFIDEIDAVGRQRGAGL 381 (723)
Q Consensus 331 --------------------i~is~s~~~~~~~G~~~~~vr~lF~~A~---------~~aP~ILfIDEiD~l~~~r~~~~ 381 (723)
+.+..........|.. .+...|..+. ...+++|||||+|.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 1111110011111110 0111122110 113689999999998432
Q ss_pred CCCChHHHHHHHHHHHhhcC----CCC-------CCceEEEEeeCCCC-CCCccccCCCCcccccccCCC-CHHHHHHHH
Q 004921 382 GGGNDEREQTINQLLTEMDG----FSG-------NSGVIVLAATNRPD-VLDSALLRPGRFDRQVTVDRP-DVAGRVKIL 448 (723)
Q Consensus 382 ~~~~~~~~~~ln~LL~~ld~----~~~-------~~~ViVIaaTN~p~-~LD~aLlrpgRfd~~I~v~~P-d~~~R~~Il 448 (723)
.++.|+..|+. +.. ...+++|++||..+ .++++|++ ||+.++.++.| +.+.+.+|+
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 34555555442 111 13689999999755 89999999 99988999999 677777888
Q ss_pred HHHh-------------------------------cCCCCCccccHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHhCC
Q 004921 449 QVHS-------------------------------RGKALAKDVDFEKISRRTPG---FTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 449 ~~~l-------------------------------~~~~l~~d~dl~~La~~t~G---~sgadL~~lv~~A~~~A~r~~~ 494 (723)
+.++ ++..++++ .+..++....+ .+.+.+.++++.|...|..++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 6531 11222222 23444444332 3679999999999999888888
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 004921 495 KEISKDEISDALERIIAG 512 (723)
Q Consensus 495 ~~I~~edl~~Al~~~~~g 512 (723)
..|+.+|+.+++..++..
T Consensus 308 ~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALSH 325 (350)
T ss_dssp SBCCHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHHhh
Confidence 889999999999887653
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=1.3e-16 Score=174.49 Aligned_cols=234 Identities=23% Similarity=0.243 Sum_probs=144.2
Q ss_pred ccccchHhHHHHHHHHHH-hcCchhh-----------------hhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 270 DVAGADQAKLELQEVVDF-LKNPDKY-----------------TALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~-l~~~~~~-----------------~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
+|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999887632 2111100 0012335678999999999999999999999999999
Q ss_pred eechhhHH-HHHhhhh-hhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--
Q 004921 332 SCAASEFV-ELFVGVG-ASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-- 403 (723)
Q Consensus 332 ~is~s~~~-~~~~G~~-~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-- 403 (723)
.+++..+. ..+.|.. ...+..+|..+. ...++||||||+|.+...+.......+.....+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998765 3345543 344555555432 235789999999999876433222222222347888888888531
Q ss_pred -----------------CCCceEEEEeeCCC-----------------------------------------CCCCcccc
Q 004921 404 -----------------GNSGVIVLAATNRP-----------------------------------------DVLDSALL 425 (723)
Q Consensus 404 -----------------~~~~ViVIaaTN~p-----------------------------------------~~LD~aLl 425 (723)
...++++|+++|.. ..+.+.|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788888721 12456666
Q ss_pred CCCCcccccccCCCCHHHHHHHHHH----H-------h--cCCCCC-ccccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 004921 426 RPGRFDRQVTVDRPDVAGRVKILQV----H-------S--RGKALA-KDVDFEKISRRTP--GFTGADLQNLMNEAAILA 489 (723)
Q Consensus 426 rpgRfd~~I~v~~Pd~~~R~~Il~~----~-------l--~~~~l~-~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A 489 (723)
+ ||+.++.|++++.++...|+.. . + .+..+. .+..+..|+...+ ....+++.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8888899999999999988862 1 1 111111 1223466666644 357899999999988776
Q ss_pred HHhCCC------CCCHHHHHHH
Q 004921 490 ARRDLK------EISKDEISDA 505 (723)
Q Consensus 490 ~r~~~~------~I~~edl~~A 505 (723)
..+... .|+.+++.++
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTS
T ss_pred HhhccCCCCCEEEEeHHHhcCC
Confidence 654321 3677776554
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=5.6e-16 Score=155.44 Aligned_cols=210 Identities=23% Similarity=0.279 Sum_probs=146.6
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceee--ech----
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS--CAA---- 335 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~--is~---- 335 (723)
+..+..|++++|.+..++.|.+.+..- ..++.++|+||||+|||+++++++++.+..... ..+
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 345568999999999988887766531 235679999999999999999999877432211 000
Q ss_pred --hhHHH--------H--HhhhhhhHHHHHHHHHH----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 336 --SEFVE--------L--FVGVGASRVRDLFEKAK----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 336 --s~~~~--------~--~~G~~~~~vr~lF~~A~----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
..+.. . ........++.++..+. ...+.+|+|||+|.+.. ..++.|+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l 150 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTL 150 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------------HHHHHHHHHH
Confidence 00000 0 00012233555555543 23578999999998732 2556677777
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADL 478 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL 478 (723)
+.. ..++.+|.+||.+..+++++++ |+ ..+.+++|+.++..++++.++...... .+..+..+++.+.| +++.+
T Consensus 151 ~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~ 224 (250)
T 1njg_A 151 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 224 (250)
T ss_dssp HSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 643 4568899999999999999988 65 689999999999999999887643322 23346788888876 99999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 479 QNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 479 ~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.++++.|... ....|+.+++.+++
T Consensus 225 ~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 225 LSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhc----cCceecHHHHHHHh
Confidence 9999987533 33579999998874
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=1.2e-15 Score=164.51 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=156.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhh
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVG 344 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G 344 (723)
..+|++++|.+.+++.+...+..-+.+ ...+..++|+||||||||+|++++|++++.++...++..+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 347999999998888877666542111 134577999999999999999999999999888777654321
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-------C---------CCce
Q 004921 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------G---------NSGV 408 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-------~---------~~~V 408 (723)
...+..++.. ...++|+||||+|.+.+. ..+.|+..++... . -..+
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCHH--------------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1123333322 234579999999988431 2222233332211 0 1246
Q ss_pred EEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004921 409 IVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAI 487 (723)
Q Consensus 409 iVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~ 487 (723)
.++++|+++..|++.+++ ||...+.+++|+.+++.+|++...+...+. ++..+..+++++.| +++++.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 778899999999999999 998889999999999999999877543332 22236788888887 88999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Q 004921 488 LAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 488 ~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
.|..++...|+.+++.+++....
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 88877778899999999998853
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.68 E-value=2.1e-16 Score=159.80 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=138.1
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
..+|++++|.+..+..+..+..+... ..+++++|+||||||||++|+++++++ +.+++++++.++...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI 94 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 46899999743222233333332221 135789999999999999999999876 478889998876543
Q ss_pred HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCce-EEEEeeCCCC--
Q 004921 342 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGV-IVLAATNRPD-- 418 (723)
Q Consensus 342 ~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~V-iVIaaTN~p~-- 418 (723)
+... +.. ...+.+|||||+|.+... .. ....|+..++.......+ +|+++++.++
T Consensus 95 ~~~~--------~~~--~~~~~vliiDe~~~~~~~---------~~---~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 STAL--------LEG--LEQFDLICIDDVDAVAGH---------PL---WEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp CGGG--------GTT--GGGSSEEEEETGGGGTTC---------HH---HHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHH--------HHh--ccCCCEEEEeccccccCC---------HH---HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 2111 111 134689999999998432 11 122333333322223334 5555554454
Q ss_pred -CCCccccCCCCcc--cccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 004921 419 -VLDSALLRPGRFD--RQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDL 494 (723)
Q Consensus 419 -~LD~aLlrpgRfd--~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 494 (723)
.+++++.+ ||. ..+.+++|+.+++.++++.+++...+. .+..+..++..+.| +.+++.++++.+...+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~- 228 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ- 228 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-
Confidence 45678888 775 899999999999999999887643332 22346778888866 99999999999988775544
Q ss_pred CCCCHHHHHHHHH
Q 004921 495 KEISKDEISDALE 507 (723)
Q Consensus 495 ~~I~~edl~~Al~ 507 (723)
..|+.+++.+++.
T Consensus 229 ~~It~~~v~~~l~ 241 (242)
T 3bos_A 229 RKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCHHHHHHHHT
T ss_pred CCCcHHHHHHHhh
Confidence 5799999988863
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=7.5e-17 Score=156.36 Aligned_cols=159 Identities=25% Similarity=0.383 Sum_probs=115.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+.+|++++|.++..+.+.+. +.. ..+++++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~---l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQV---LQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHH---HTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHH---Hhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 35799999998876555443 322 235789999999999999999999986 78999999
Q ss_pred hhhHH--HHHhhhhhhHHHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 335 ASEFV--ELFVGVGASRVRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 335 ~s~~~--~~~~G~~~~~vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
+..+. ..+.+.....++.++..+. ...++||||||+|.+...+... ........+..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~---~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL---A----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhh---c----cCCeEEE
Confidence 88776 2345556667788887664 4568899999999997543211 1112223333333 2 3457788
Q ss_pred EeeCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHH
Q 004921 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKIL 448 (723)
Q Consensus 412 aaTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il 448 (723)
++||.++ .+++++++ ||+ .+.+++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888876 78999999 998 6999999999998875
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.2e-15 Score=165.13 Aligned_cols=222 Identities=16% Similarity=0.211 Sum_probs=157.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc------CCceeeechhhHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------GVPFFSCAASEFV 339 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~------~~p~i~is~s~~~ 339 (723)
..+++++|.++..+.|.+.+..... ...+..++|+||||||||++++++++++ +.+++++++....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 4568999998887777664432111 1346789999999999999999999988 8899999986432
Q ss_pred H------HHh----------hh-hhhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 340 E------LFV----------GV-GASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 340 ~------~~~----------G~-~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
. ... +. .......++...... .|+||+|||+|.+..... ...+..|+..++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSE 158 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhh
Confidence 1 110 11 112234444444433 389999999999965321 1256677777765
Q ss_pred CCCCCceEEEEeeCCC---CCCCccccCCCCcc-cccccCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHhhCC--
Q 004921 402 FSGNSGVIVLAATNRP---DVLDSALLRPGRFD-RQVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRTP-- 471 (723)
Q Consensus 402 ~~~~~~ViVIaaTN~p---~~LD~aLlrpgRfd-~~I~v~~Pd~~~R~~Il~~~l~~----~~l~~d~dl~~La~~t~-- 471 (723)
. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+. +..+..++..+.
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAARE 234 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHh
Confidence 4 34578889999987 457888887 665 48999999999999999987642 2222 223455666665
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 472 -GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 472 -G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
| +++.+.+++..+...+...+...|+.+++..++....
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 7888999999998888877888999999999988764
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=4e-16 Score=167.69 Aligned_cols=212 Identities=19% Similarity=0.173 Sum_probs=147.8
Q ss_pred cccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC------Ccee
Q 004921 258 FQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG------VPFF 331 (723)
Q Consensus 258 ~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~------~p~i 331 (723)
.+.....+.+|++++|.+++++.|...+. .. .. .++||+||||||||++|++++++++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 34445567789999999999877765542 21 12 3499999999999999999999854 4577
Q ss_pred eechhhHHHHHhhhhhhHHHHHHHHHH----------------cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 332 SCAASEFVELFVGVGASRVRDLFEKAK----------------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 332 ~is~s~~~~~~~G~~~~~vr~lF~~A~----------------~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
.+++++... ...+++.+.... ...+.||||||+|.+... ..+.|
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~~~~L 153 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------AQSAL 153 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------HHHHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------HHHHH
Confidence 777765311 111111111111 124579999999998432 34566
Q ss_pred HHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCC
Q 004921 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFT 474 (723)
Q Consensus 396 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~s 474 (723)
+..|+... ....+|.+||.++.+++++++ |+. .+.+++|+.++...+++..+....+. ++..+..++..+.| +
T Consensus 154 l~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~ 227 (353)
T 1sxj_D 154 RRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-D 227 (353)
T ss_dssp HHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-C
T ss_pred HHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 66666433 345677788999999999998 775 88999999999999999877544332 23346888888886 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 004921 475 GADLQNLMNEAAILAARRDLK-EISKDEISDALE 507 (723)
Q Consensus 475 gadL~~lv~~A~~~A~r~~~~-~I~~edl~~Al~ 507 (723)
.+.+.++++.+...+.+.+.. .|+.+++.+++.
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888888888887666554333 699999887654
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=1.3e-16 Score=168.69 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=137.8
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH-----
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----- 340 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----- 340 (723)
++++|++.+++.+...+......-. ...++...+||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999888887765321000 001233479999999999999999999987 66799999876532
Q ss_pred HHhhhh-----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCC
Q 004921 341 LFVGVG-----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNS 406 (723)
Q Consensus 341 ~~~G~~-----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~ 406 (723)
.+.|.. ......+.........+||||||+|.+.. .+++.|+..|+... .-.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 222210 00001222333334458999999999843 35666666665322 013
Q ss_pred ceEEEEeeCC--------------------------CCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-----
Q 004921 407 GVIVLAATNR--------------------------PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK----- 455 (723)
Q Consensus 407 ~ViVIaaTN~--------------------------p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~----- 455 (723)
++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.+++..
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 4468888988 999999999999999999999876431
Q ss_pred ----CC-CccccHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 004921 456 ----AL-AKDVDFEKISRRTP--GFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 456 ----~l-~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~ 490 (723)
.+ -.+..+..|+...+ .++.++|.++++.+...+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 12223567777766 5788999999998876543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=4.8e-16 Score=185.08 Aligned_cols=221 Identities=19% Similarity=0.273 Sum_probs=158.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeech
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAA 335 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~ 335 (723)
-+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVL---CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHH---hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 47999999988766554433 32 235689999999999999999999976 566777777
Q ss_pred hhHH--HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 336 SEFV--ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 336 s~~~--~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
+.+. ..+.|..+.+++.+|..+....++||||||+|.+.+.++.. .......+.|...+ ....+.+|++
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~~~l----~~~~~~~I~a 321 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHSSCS----SSCCCEEEEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHHHHH----hCCCeEEEEE
Confidence 7665 34667788899999999988888999999999997654321 11222333333333 3567889999
Q ss_pred eCCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC------CCCCccccHHHHHhhC-----CCCCHHH
Q 004921 414 TNRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG------KALAKDVDFEKISRRT-----PGFTGAD 477 (723)
Q Consensus 414 TN~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~------~~l~~d~dl~~La~~t-----~G~sgad 477 (723)
||.++ .+|++|.| ||+ .+.++.|+.+++.+|++.+.+. ..+. +..+..++..+ ..+.+..
T Consensus 322 t~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp ECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHH
T ss_pred eCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCchH
Confidence 99753 57899999 997 7999999999999999876543 2222 22244444433 3356778
Q ss_pred HHHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHc
Q 004921 478 LQNLMNEAAILAAR----RDLKEISKDEISDALERIIA 511 (723)
Q Consensus 478 L~~lv~~A~~~A~r----~~~~~I~~edl~~Al~~~~~ 511 (723)
+..++++|+..+.. .....++.+++.+++.+...
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 88999988766544 23567999999999988653
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=5.2e-16 Score=174.85 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=138.6
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+-+|++|+|.++..+.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 45799999999887766655432 224579999999999999999999986 78899999
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 335 ASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 335 ~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
++ ..+.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|++|
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEEecC
Confidence 87 66778888899999999998889999999 10 113445555554 4578999999
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-----ccccHHHHHhhCC-----CCCHHHHH
Q 004921 415 NRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-----KDVDFEKISRRTP-----GFTGADLQ 479 (723)
Q Consensus 415 N~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-----~d~dl~~La~~t~-----G~sgadL~ 479 (723)
|.++ .+|++++| ||. .|.|+.|+.+++.+|++.++...... .+..+..++..+. .+.+....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9988 69999999 997 59999999999999999877552211 1222444444332 34466777
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 004921 480 NLMNEAAILAARRDL-KEISKDEISDALERI 509 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~-~~I~~edl~~Al~~~ 509 (723)
+++.+|+..+..+.. ......+++..++++
T Consensus 376 ~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 888887765544432 334555555555543
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=7.2e-15 Score=159.68 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=157.5
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCc--ceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK--GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV 339 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~--gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~ 339 (723)
..+++++|.++..+.|.+.+...... ..+. .++|+||||||||++++++++++ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34588999999988888776542111 2234 79999999999999999999988 6788998875432
Q ss_pred ------HHHh----------hhhhhH-HHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC
Q 004921 340 ------ELFV----------GVGASR-VRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG 401 (723)
Q Consensus 340 ------~~~~----------G~~~~~-vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~ 401 (723)
.... +..... ...+..... ...|.||+|||+|.+. ...++.|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 1111 101111 122222222 2458999999999982 2356667776654
Q ss_pred CCC--CCceEEEEeeCCC---CCCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHhhCC
Q 004921 402 FSG--NSGVIVLAATNRP---DVLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRG----KALAKDVDFEKISRRTP 471 (723)
Q Consensus 402 ~~~--~~~ViVIaaTN~p---~~LD~aLlrpgRfd~-~I~v~~Pd~~~R~~Il~~~l~~----~~l~~d~dl~~La~~t~ 471 (723)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+ .+..+..+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHh
Confidence 432 2478899999988 568888877 7765 7999999999999999887753 222 3334677888873
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 472 --------GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 472 --------G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
+..++.+.++++.|...|..++...++.+++..++....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 348899999999999888888888999999999988764
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=1.9e-15 Score=159.79 Aligned_cols=203 Identities=22% Similarity=0.228 Sum_probs=143.3
Q ss_pred ccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeech
Q 004921 261 VPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAA 335 (723)
Q Consensus 261 ~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~ 335 (723)
....+.+|++++|++++++.|.+.+. . ...| ++||+||||||||++|+++++++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34556789999999998877765432 2 1233 39999999999999999999986 456788887
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHH------cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceE
Q 004921 336 SEFVELFVGVGASRVRDLFEKAK------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (723)
Q Consensus 336 s~~~~~~~G~~~~~vr~lF~~A~------~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~Vi 409 (723)
++... ...++..+.... ...+.||+|||+|.+.. ...+.|+..++.. ..+++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~ 134 (319)
T 2chq_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCR 134 (319)
T ss_dssp TSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEE
T ss_pred ccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCe
Confidence 65321 111222222221 14478999999999843 2456677777643 35678
Q ss_pred EEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 410 VIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
+|++||.+..+++++.+ |+. .+.+++|+.+++.++++.+++...+. .+..+..++..+.| +.+.+.++++.+...
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 88999999999999999 775 89999999999999999888655442 22345677776655 777777777665422
Q ss_pred HHHhCCCCCCHHHHHHHH
Q 004921 489 AARRDLKEISKDEISDAL 506 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al 506 (723)
...|+.+++.+.+
T Consensus 211 -----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -----GEVVDADTIYQIT 223 (319)
T ss_dssp -----SSCBCHHHHHHHT
T ss_pred -----CCCCCHHHHHHHH
Confidence 3468888877664
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=2.8e-15 Score=178.55 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=133.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
.-+|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 45799999999888776665432 234679999999999999999999986 78888888
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 335 ASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 335 ~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
+ ...|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|++|
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEeCC
Confidence 7 455788889999999999999999999999 10 113445555554 5578999999
Q ss_pred CCCC-----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCcc-----ccHHHHHhh-----CCCCCHHHHH
Q 004921 415 NRPD-----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKD-----VDFEKISRR-----TPGFTGADLQ 479 (723)
Q Consensus 415 N~p~-----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d-----~dl~~La~~-----t~G~sgadL~ 479 (723)
|..+ .+|++++| || ..|.|+.|+.+++.+||+.+........+ ..+..++.. ..++.+....
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9988 69999999 99 56999999999999999977655322111 123333332 3467788888
Q ss_pred HHHHHHHHHHHHhC
Q 004921 480 NLMNEAAILAARRD 493 (723)
Q Consensus 480 ~lv~~A~~~A~r~~ 493 (723)
.++.+|+..+..+.
T Consensus 376 ~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 376 DLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 89998876655443
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=1.5e-15 Score=180.84 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=137.2
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCc-ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhh
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPK-GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVG 344 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~-gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G 344 (723)
++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5689999999988887776432111 011233 69999999999999999999987 789999999998775543
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------CCCceEEEEeeC
Q 004921 345 VGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------GNSGVIVLAATN 415 (723)
Q Consensus 345 ~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~~~~ViVIaaTN 415 (723)
. ...++...+...++||||||||.+.+ .+++.|++.|+... ...++++|+|||
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAHP--------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCH--------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3 22233444555678999999998732 36677777776422 223579999999
Q ss_pred CCCC------------CCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC-------CCC---ccccHHHHHh--hCC
Q 004921 416 RPDV------------LDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK-------ALA---KDVDFEKISR--RTP 471 (723)
Q Consensus 416 ~p~~------------LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~-------~l~---~d~dl~~La~--~t~ 471 (723)
.+.. ++|+|++ ||+.+|.|++|+.+++.+|++.++... ... .+..+..|+. ..+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 7654 7888888 999999999999999999998776431 111 1122455654 345
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004921 472 GFTGADLQNLMNEAAIL 488 (723)
Q Consensus 472 G~sgadL~~lv~~A~~~ 488 (723)
.++.++|+++++++...
T Consensus 707 ~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVED 723 (758)
T ss_dssp TTTTTTHHHHHHHHTHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 66788888888876433
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=6.2e-15 Score=156.04 Aligned_cols=202 Identities=17% Similarity=0.172 Sum_probs=144.0
Q ss_pred cCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechh
Q 004921 262 PETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAAS 336 (723)
Q Consensus 262 ~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s 336 (723)
...+.+|++++|.+.+++.|.+.+.. ...|. +||+||||+|||++|+++++++ +.+++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 34557899999999998888776542 13344 9999999999999999999985 3567777765
Q ss_pred hHHHHHhhhhhhHHHHHHHHHH-------cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceE
Q 004921 337 EFVELFVGVGASRVRDLFEKAK-------SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI 409 (723)
Q Consensus 337 ~~~~~~~G~~~~~vr~lF~~A~-------~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~Vi 409 (723)
+.. +...+++++.... ...+.||+|||+|.+.. ...+.|+..++. ...++.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~ 139 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMEL--YSNSTR 139 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TTTTEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhc--cCCCce
Confidence 421 1234455555443 23478999999999843 134556666653 234577
Q ss_pred EEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 410 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 410 VIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
+|.+||.+..+++++.+ |+. .+.+++|+.+++.++++.+++...+. .+..+..++..+.| +++.+.++++.+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88888999999999998 664 89999999999999999877543222 22346778887765 777777777766422
Q ss_pred HHHhCCCCCCHHHHHHHH
Q 004921 489 AARRDLKEISKDEISDAL 506 (723)
Q Consensus 489 A~r~~~~~I~~edl~~Al 506 (723)
...++.+++.+++
T Consensus 216 -----~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 216 -----HGLVNADNVFKIV 228 (323)
T ss_dssp -----HSSBCHHHHHHHH
T ss_pred -----CCCcCHHHHHHHH
Confidence 1468888887765
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=5.4e-15 Score=178.25 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=133.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+.+|++++|.++....+.+++ .. ..++++||+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l---~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQIL---LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH---HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHH---hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 458999999987655554433 22 234679999999999999999999987 88999999
Q ss_pred hhhHH--HHHhhhhhhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 335 ASEFV--ELFVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 335 ~s~~~--~~~~G~~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+... + .....+.|...++ ...+.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g---~~~~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---G---AVDAGNMLKPALA----RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---c---hHHHHHHHHHHHh----CCCeEEE
Confidence 98886 457788888999999999875 68999999999997543221 1 1223334444443 3567889
Q ss_pred EeeCCCC----CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC------CCCCccccHHHHHhh-----CCCCCHH
Q 004921 412 AATNRPD----VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG------KALAKDVDFEKISRR-----TPGFTGA 476 (723)
Q Consensus 412 aaTN~p~----~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~------~~l~~d~dl~~La~~-----t~G~sga 476 (723)
++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++.. ..+. +..+..++.. +..+.+.
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChH
Confidence 9999775 48999999 9985 999999999999999866542 2222 2223444443 3457788
Q ss_pred HHHHHHHHHHHHHHHh
Q 004921 477 DLQNLMNEAAILAARR 492 (723)
Q Consensus 477 dL~~lv~~A~~~A~r~ 492 (723)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999887665543
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-15 Score=162.75 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=104.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeechhhHHH----------HHhh------hhhhHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCAASEFVE----------LFVG------VGASRVRDL 353 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is~s~~~~----------~~~G------~~~~~vr~l 353 (723)
..|.+++|+||||||||++++++++++ .+.+++++|..+.+ .+.| .....++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999987 45688899864322 2222 234567888
Q ss_pred HHHH--HcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCC----CCccccCC
Q 004921 354 FEKA--KSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDV----LDSALLRP 427 (723)
Q Consensus 354 F~~A--~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~----LD~aLlrp 427 (723)
|... ....++||||||+|.+. . +.++..|+.... ....+++||+++|..+. |++++++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8875 34668999999999995 1 236666776543 24567899999999875 4555666
Q ss_pred CCcc-cccccCCCCHHHHHHHHHHHhcC
Q 004921 428 GRFD-RQVTVDRPDVAGRVKILQVHSRG 454 (723)
Q Consensus 428 gRfd-~~I~v~~Pd~~~R~~Il~~~l~~ 454 (723)
||. .+|.|++++.++..+|++..++.
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 786 68999999999999999988754
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.4e-14 Score=153.48 Aligned_cols=205 Identities=21% Similarity=0.241 Sum_probs=142.6
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC-----Cceeee
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG-----VPFFSC 333 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~-----~p~i~i 333 (723)
+.....+.+|++++|++++++.|.+.+..- ..| ++||+||||||||++|+++++++. .+++.+
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~ 82 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe
Confidence 334456678999999999998888766431 222 499999999999999999999863 347777
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHH-H-----cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc
Q 004921 334 AASEFVELFVGVGASRVRDLFEKA-K-----SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG 407 (723)
Q Consensus 334 s~s~~~~~~~G~~~~~vr~lF~~A-~-----~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ 407 (723)
++++.... ..++..+... . ...+.+|+|||+|.+.. ...+.|+..++.. ..+
T Consensus 83 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~ 140 (327)
T 1iqp_A 83 NASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSN 140 (327)
T ss_dssp ETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTT
T ss_pred eccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCC
Confidence 76654321 1122222211 1 14478999999999843 2456666666643 345
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQNLMNEAA 486 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~ 486 (723)
+.+|.+||.++.+++++.+ |+. .+.+++|+.++..++++..++...+. ++..+..++..+.| +.+.+.++++.+.
T Consensus 141 ~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 7888899999999999998 775 78999999999999999887654432 22346777777765 7888888877654
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 004921 487 ILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 487 ~~A~r~~~~~I~~edl~~Al 506 (723)
. ....++.+++...+
T Consensus 217 ~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 217 A-----LDKKITDENVFMVA 231 (327)
T ss_dssp T-----TCSEECHHHHHHHT
T ss_pred h-----cCCCCCHHHHHHHH
Confidence 2 22357777766553
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=3.1e-15 Score=178.11 Aligned_cols=195 Identities=19% Similarity=0.266 Sum_probs=137.1
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCC----CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHH---
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGA----KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL--- 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~----~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~--- 341 (723)
.+|+|++++++.+.+.+.... .|. ++..++||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 458899999888877665432 122 223469999999999999999999999999999999988653
Q ss_pred ---------HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC--------
Q 004921 342 ---------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-------- 404 (723)
Q Consensus 342 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-------- 404 (723)
|+|.... ..+....+...++||||||||.+.+ .+++.|++.|+...-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~--------------~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTTEEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH--------------HHHHHHHHHhcCcEEEcCCCCEE
Confidence 3443222 2234444555679999999998732 367777777764210
Q ss_pred -CCceEEEEeeCCCC-------------------------CCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCC---
Q 004921 405 -NSGVIVLAATNRPD-------------------------VLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK--- 455 (723)
Q Consensus 405 -~~~ViVIaaTN~p~-------------------------~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~--- 455 (723)
-.++++|+|||.+. .++|+|++ ||+..|.|++|+.+++..|++.+++..
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 14578999999854 57788888 999999999999999999999877521
Q ss_pred ------CCC-ccccHHHHHhhCC--CCCHHHHHHHHHHHHHH
Q 004921 456 ------ALA-KDVDFEKISRRTP--GFTGADLQNLMNEAAIL 488 (723)
Q Consensus 456 ------~l~-~d~dl~~La~~t~--G~sgadL~~lv~~A~~~ 488 (723)
.+. .+..+..|+...+ ++..+++.++++.+...
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 111 1122455555432 34577788777776543
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=1e-15 Score=148.19 Aligned_cols=152 Identities=24% Similarity=0.367 Sum_probs=109.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----------CCceeeec
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----------GVPFFSCA 334 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----------~~p~i~is 334 (723)
+.+|++++|.++..+.+.+ .+.. ..++++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~---~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQ---ILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHH---HHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHH---HHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3579999999876655544 3332 235689999999999999999999986 78899998
Q ss_pred hhhHHHH--HhhhhhhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 335 ASEFVEL--FVGVGASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 335 ~s~~~~~--~~G~~~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
+..+... +.+.....++.++..+... .|++|||||+|.+...+... ..... ..+.|...++ ...+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~---~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALD---AGNILKPMLA----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCC---THHHHHHHHH----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchH---HHHHHHHHHh----cCCeeEE
Confidence 8776532 3455566677888777654 68899999999997543311 11111 3333333343 3567899
Q ss_pred EeeCCCC-----CCCccccCCCCcccccccCCCC
Q 004921 412 AATNRPD-----VLDSALLRPGRFDRQVTVDRPD 440 (723)
Q Consensus 412 aaTN~p~-----~LD~aLlrpgRfd~~I~v~~Pd 440 (723)
++||.++ .+|+++++ ||+. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9999875 68999999 9984 8998886
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=2.3e-14 Score=155.05 Aligned_cols=209 Identities=23% Similarity=0.301 Sum_probs=147.1
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCce--eeech---hh
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPF--FSCAA---SE 337 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~--i~is~---s~ 337 (723)
..+.+|++++|.+++++.|.+.+.. .+.+..+||+||||||||++|+++++.++... ....| ..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4456899999999999888876642 13456799999999999999999999875421 11111 11
Q ss_pred HHHHH-------h------hhhhhHHHHHHHHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhc
Q 004921 338 FVELF-------V------GVGASRVRDLFEKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMD 400 (723)
Q Consensus 338 ~~~~~-------~------G~~~~~vr~lF~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld 400 (723)
+.... . ..+...++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le 144 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLE 144 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHH
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHh
Confidence 10000 0 0122346677776653 3468999999999832 25677777777
Q ss_pred CCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHhhCCCCCHHHHH
Q 004921 401 GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-KDVDFEKISRRTPGFTGADLQ 479 (723)
Q Consensus 401 ~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 479 (723)
. ...++++|.+|+.+..+++.+++ |+ ..+.+++|+.++..++++.+++...+. .+..+..++..+.| +++++.
T Consensus 145 ~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~ 218 (373)
T 1jr3_A 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL 218 (373)
T ss_dssp S--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHH
T ss_pred c--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHH
Confidence 4 34568888889988899999998 66 689999999999999999887543332 22236778888866 899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 480 NLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 480 ~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
++++.+...+ ...|+.+++.+++
T Consensus 219 ~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 219 SLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHhc----CCcccHHHHHHHh
Confidence 9998875332 3568888887664
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=1.4e-15 Score=172.05 Aligned_cols=210 Identities=20% Similarity=0.177 Sum_probs=132.6
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC--Cceeeechhh-HHHHHhhh
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE-FVELFVGV 345 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~-~~~~~~G~ 345 (723)
..|+|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|...++.. ..+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3578998887665443321 24799999999999999999999884 3555554421 11222221
Q ss_pred -h-hh-HHHHHHHHHHcC---CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEE
Q 004921 346 -G-AS-RVRDLFEKAKSK---APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVL 411 (723)
Q Consensus 346 -~-~~-~vr~lF~~A~~~---aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVI 411 (723)
. .. .-...|..+... .++|||||||+.+.+ .+.+.|+..|+... ..+..++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~--------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP--------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCCH--------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH--------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 0 00 012223322222 468999999987632 36677777775321 11122567
Q ss_pred EeeCCCCC---CCccccCCCCcccccccCCCCH-HHHHHHHHHHhc-------------------------CCCCCcccc
Q 004921 412 AATNRPDV---LDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSR-------------------------GKALAKDVD 462 (723)
Q Consensus 412 aaTN~p~~---LD~aLlrpgRfd~~I~v~~Pd~-~~R~~Il~~~l~-------------------------~~~l~~d~d 462 (723)
+|||.+.. ..+++++ ||...+.++.|+. +++..|++.+.. +..+++++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 77886322 4468999 9999999999987 778889876542 11121111
Q ss_pred HHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 463 FEKISRR---------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 463 l~~La~~---------t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
.+.++.. ..|.|++.+..+++.|...|..+++..++.+|+. ++..++
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 2223222 3588999999999999999999999999999988 544433
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.53 E-value=2.6e-14 Score=148.23 Aligned_cols=204 Identities=22% Similarity=0.233 Sum_probs=121.6
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFVELF 342 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~~~~~ 342 (723)
.+|++++|.+...+.+.+.+..+.. .+.++||+||||||||++|++++.... .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999998887776655321 246799999999999999999999874 799999998764321
Q ss_pred -----hhhhhh-------HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC--------
Q 004921 343 -----VGVGAS-------RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-------- 402 (723)
Q Consensus 343 -----~G~~~~-------~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-------- 402 (723)
.|.... .....|..+ ..++|||||+|.+.. ..+..|+..++..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 111000 011223333 357999999999843 2344555555421
Q ss_pred -CCCCceEEEEeeCCC-------CCCCccccCCCCcccccccCCCCHHH----HHHHHHHHhc----CCCC-----Cccc
Q 004921 403 -SGNSGVIVLAATNRP-------DVLDSALLRPGRFDRQVTVDRPDVAG----RVKILQVHSR----GKAL-----AKDV 461 (723)
Q Consensus 403 -~~~~~ViVIaaTN~p-------~~LD~aLlrpgRfd~~I~v~~Pd~~~----R~~Il~~~l~----~~~l-----~~d~ 461 (723)
....++.+|++||.+ ..++++|.+ ||.. +.+..|+..+ ...+++.+++ .... -.+.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 112357899999985 246788887 7753 3444555544 3444443332 1111 1122
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 004921 462 DFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 502 (723)
Q Consensus 462 dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl 502 (723)
.+..|....+..+.++|.++++.+...+ ....|+.+|+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3455666665568899999999987554 2345555544
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=5.9e-15 Score=170.80 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=139.1
Q ss_pred cccccchHhHHHHHHHHHHhcC-chhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec----hhhHHHH--
Q 004921 269 ADVAGADQAKLELQEVVDFLKN-PDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA----ASEFVEL-- 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~-~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is----~s~~~~~-- 341 (723)
..|+|++.+|+.+.-.+ ... +........+...++||+||||||||++|+++|+.++.+++... +..+...
T Consensus 295 ~~I~G~e~vk~al~~~l--~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALAL--FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTT--TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHH--hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 45889998886663211 111 01111112233448999999999999999999999877665432 2222111
Q ss_pred ---HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-----------CCCc
Q 004921 342 ---FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-----------GNSG 407 (723)
Q Consensus 342 ---~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-----------~~~~ 407 (723)
+.|... .....+..|. .+||||||||.+.+. ..+.|+..|+... .+.+
T Consensus 373 ~~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l~~~--------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLAD---GGIAVIDEIDKMRDE--------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp SGGGTSSCS-EEECHHHHHS---SSEECCTTTTCCCSH--------------HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred ecccccccc-ccCCeeEecC---CCcEEeehhhhCCHh--------------HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 111100 0011233332 369999999998432 4556666665321 1346
Q ss_pred eEEEEeeCCCC-------------CCCccccCCCCccc-ccccCCCCHHHHHHHHHHHhcCCC-------CC--------
Q 004921 408 VIVLAATNRPD-------------VLDSALLRPGRFDR-QVTVDRPDVAGRVKILQVHSRGKA-------LA-------- 458 (723)
Q Consensus 408 ViVIaaTN~p~-------------~LD~aLlrpgRfd~-~I~v~~Pd~~~R~~Il~~~l~~~~-------l~-------- 458 (723)
+.||+|||.+. .|+++|++ |||. .+..+.|+.+ ...|.+..++... +.
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 78999999986 89999999 9985 4455667777 7777776654321 00
Q ss_pred -----------ccccHHHHHhh--------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 459 -----------KDVDFEKISRR--------------TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 459 -----------~d~dl~~La~~--------------t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
.+.....|... ..+.|.+.+.++++.|...|..+.+..++.+|+.+|+.-.
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 11112333332 4578999999999999999999999999999999998654
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=8.5e-14 Score=149.95 Aligned_cols=194 Identities=13% Similarity=0.166 Sum_probs=131.1
Q ss_pred cccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-----------
Q 004921 260 EVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV----------- 328 (723)
Q Consensus 260 ~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~----------- 328 (723)
.....+.+|++++|++++++.|++.+. +. .+.|. ++|+||+|+|||++++++++++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~--~~--------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD--QP--------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT--CT--------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh--hC--------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 344566789999999998877665431 11 23455 999999999999999999996421
Q ss_pred ------------------ceeeechhhHHHHHhhhhhhHHHHHHHHHH--------------cCCCeEEEEcCccchhhh
Q 004921 329 ------------------PFFSCAASEFVELFVGVGASRVRDLFEKAK--------------SKAPCIVFIDEIDAVGRQ 376 (723)
Q Consensus 329 ------------------p~i~is~s~~~~~~~G~~~~~vr~lF~~A~--------------~~aP~ILfIDEiD~l~~~ 376 (723)
+++.++.++.. ......+++.++.+. ...|.||+|||+|.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-
Confidence 12233322210 000012445444432 22577999999998632
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~ 456 (723)
...+.|+..++... .+..+|.+||.++.+.+.+++ |+ ..+.|++|+.+++.++++..++...
T Consensus 149 -------------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 149 -------------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -------------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 24556666666433 357888889999999999998 77 7899999999999999998875433
Q ss_pred CC-c-cccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 004921 457 LA-K-DVDFEKISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 457 l~-~-d~dl~~La~~t~G~sgadL~~lv~~A~~~ 488 (723)
+. + +..+..+++.+.| +.+++.++++.+...
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 32 2 3346778888766 888888888876543
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.50 E-value=1.8e-14 Score=153.40 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=128.3
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH---
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF--- 342 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~--- 342 (723)
++++|.+...+.+.+.+.... ..+.++||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 368899888888877766542 235689999999999999999999965 6899999987654321
Q ss_pred --hhhh-------hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------C
Q 004921 343 --VGVG-------ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS---------G 404 (723)
Q Consensus 343 --~G~~-------~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~---------~ 404 (723)
.|.. .......|..+. .++|||||||.+.. ..+..|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccc
Confidence 1210 001224455554 36999999999843 24455666555332 1
Q ss_pred CCceEEEEeeCCC-------CCCCccccCCCCcccccccCCCCHHHH----HHHHHHHhcC---------CCCCccccHH
Q 004921 405 NSGVIVLAATNRP-------DVLDSALLRPGRFDRQVTVDRPDVAGR----VKILQVHSRG---------KALAKDVDFE 464 (723)
Q Consensus 405 ~~~ViVIaaTN~p-------~~LD~aLlrpgRfd~~I~v~~Pd~~~R----~~Il~~~l~~---------~~l~~d~dl~ 464 (723)
..++.||++||.+ ..+++.|.. ||. .+.+..|+..+| ..+++.+++. ..+ .+..+.
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~-s~~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGF-TPQAMD 210 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCB-CHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCC-CHHHHH
Confidence 2358899999985 134555555 554 455556665544 3455544321 112 222356
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 004921 465 KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIS 503 (723)
Q Consensus 465 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~ 503 (723)
.|....+..+.++|.++++.+...+ ....|+.+|+.
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 6777776668999999999887653 23456666553
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=4.4e-14 Score=170.27 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=137.9
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH---
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~--- 341 (723)
+++|+|++++++.+...+...+..... ..++..++||+||||||||++|++++..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999888877653211000 01222479999999999999999999988 789999999876542
Q ss_pred ---------HhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC---------
Q 004921 342 ---------FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------- 403 (723)
Q Consensus 342 ---------~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------- 403 (723)
|+|... ...+....+...++||||||||.+.+ .+++.|+..|+...
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP--------------DVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH--------------HHHHHHHHHHTTTEECCSSSCCE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH--------------HHHHHHHHHhccCceECCCCCEe
Confidence 122211 12334444455568999999998732 47788888877432
Q ss_pred CCCceEEEEeeCCC--------------------------CCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC---
Q 004921 404 GNSGVIVLAATNRP--------------------------DVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG--- 454 (723)
Q Consensus 404 ~~~~ViVIaaTN~p--------------------------~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~--- 454 (723)
.-.++++|+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.+++.
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 11367899999972 246677777 99999999999999999999877642
Q ss_pred ------CCCC-ccccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 004921 455 ------KALA-KDVDFEKISRRTP--GFTGADLQNLMNEAAILA 489 (723)
Q Consensus 455 ------~~l~-~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A 489 (723)
..+. .+..+..|+...+ .++.++|.++++.+...+
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1111 1223566676655 568888988888876544
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.3e-13 Score=148.49 Aligned_cols=209 Identities=22% Similarity=0.221 Sum_probs=138.2
Q ss_pred ccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC-----ceeee
Q 004921 259 QEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV-----PFFSC 333 (723)
Q Consensus 259 ~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~-----p~i~i 333 (723)
+.....+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+.. .++.+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 33445667899999999998877766542 13344 999999999999999999998632 35556
Q ss_pred chhhHHHHHhhhhhhHHHHHHHHHHc------CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCc
Q 004921 334 AASEFVELFVGVGASRVRDLFEKAKS------KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG 407 (723)
Q Consensus 334 s~s~~~~~~~G~~~~~vr~lF~~A~~------~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ 407 (723)
++++.. +...+++.+..... ..+.|++|||+|.+.. ...+.|+..++... ..
T Consensus 83 ~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~ 140 (340)
T 1sxj_C 83 NASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KN 140 (340)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TT
T ss_pred cCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CC
Confidence 654321 12233333332221 2368999999999842 24566777776433 45
Q ss_pred eEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcC--CCCCccccHHHHHhhCCCCCHHHHHHHHHHH
Q 004921 408 VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRG--KALAKDVDFEKISRRTPGFTGADLQNLMNEA 485 (723)
Q Consensus 408 ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~--~~l~~d~dl~~La~~t~G~sgadL~~lv~~A 485 (723)
..+|.+||.+..+.+++++ |+. .+.+.+++.++..+++...++. ..+.+ .....++..+.| +.+.+.++++.+
T Consensus 141 ~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~~~ 215 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQSC 215 (340)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTTTT
T ss_pred eEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 5677888999999999999 774 7889999999999988887743 33432 235667766655 666666666544
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 004921 486 AILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 486 ~~~A~r~~~~~I~~edl~~Al 506 (723)
...+...+...|+.+++.+++
T Consensus 216 ~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 216 KATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTCSSSCCCBCHHHHHHHT
T ss_pred HHhcCCcccccccHHHHHHHh
Confidence 322211122358888776653
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=3.2e-12 Score=139.91 Aligned_cols=227 Identities=15% Similarity=0.128 Sum_probs=149.3
Q ss_pred ccccccccchHhHHHHHHHH-HHhcCchhhhhhCCCCCcceEE--eCCCCCcHHHHHHHHHHhc---------CCceeee
Q 004921 266 VTFADVAGADQAKLELQEVV-DFLKNPDKYTALGAKIPKGCLL--VGPPGTGKTLLARAVAGEA---------GVPFFSC 333 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv-~~l~~~~~~~~~g~~~p~gvLL--~GPpGtGKT~LAralA~e~---------~~p~i~i 333 (723)
...++++|.++..+.|.+.+ ...... ....+..++| +||||+|||+|+++++++. +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999888888776 543211 0023567999 9999999999999999875 5677888
Q ss_pred chhh------HHHHHh---hh-------hhhH-HHHHHHHHH-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 334 AASE------FVELFV---GV-------GASR-VRDLFEKAK-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 334 s~s~------~~~~~~---G~-------~~~~-vr~lF~~A~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
++.. +..... |. .... ...+..... ...|.+|+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 8642 221111 11 1111 222222222 24589999999999853210 012355555
Q ss_pred HHhhcCCCC-C--CceEEEEeeCCCC---CCC---ccccCCCCcccccccCCCCHHHHHHHHHHHhcCC---CCCccccH
Q 004921 396 LTEMDGFSG-N--SGVIVLAATNRPD---VLD---SALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK---ALAKDVDF 463 (723)
Q Consensus 396 L~~ld~~~~-~--~~ViVIaaTN~p~---~LD---~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~---~l~~d~dl 463 (723)
+..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++... ....+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555554321 2 6788888888765 244 55666 565569999999999999998765421 11122345
Q ss_pred HHHHhhCC------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 464 EKISRRTP------GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 464 ~~La~~t~------G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
..++..+. | .++.+..++..+...+..++...++.+++..++...
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 67777777 6 889999999999888887777889999998887654
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.40 E-value=2.6e-13 Score=170.47 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=110.5
Q ss_pred CCCccccccccchHhHHHHHHHHHH-hcC----------chhhhh------hCCC----------CCcc--eEEeCCCCC
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF-LKN----------PDKYTA------LGAK----------IPKG--CLLVGPPGT 313 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~-l~~----------~~~~~~------~g~~----------~p~g--vLL~GPpGt 313 (723)
...++|+||.|.+++|+++.+.+.+ ++. ++.|+. .|.. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3448999999999999999988876 532 556665 3444 6777 999999999
Q ss_pred cHHHHHHHHHHhc---CCceeeechhhHH------------HHHhhh----hhhHHHHHHHHHHcCCCeEEEEcCccchh
Q 004921 314 GKTLLARAVAGEA---GVPFFSCAASEFV------------ELFVGV----GASRVRDLFEKAKSKAPCIVFIDEIDAVG 374 (723)
Q Consensus 314 GKT~LAralA~e~---~~p~i~is~s~~~------------~~~~G~----~~~~vr~lF~~A~~~aP~ILfIDEiD~l~ 374 (723)
|||+||++++.+. |-|.++++..+.. +.|++. +++.++.+|..|+..+||+||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5566666655432 344556 78899999999999999999999999999
Q ss_pred hhcC---CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 375 RQRG---AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 375 ~~r~---~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+.++ .....+..-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8843 221112245566899999999998777888888 77764
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.33 E-value=2.7e-12 Score=121.22 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=80.0
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhh
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVG 346 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~ 346 (723)
+++|.+...+.+.+.+..+. ..+..+||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 67888888877777666542 234579999999999999999999986 78999 998876443
Q ss_pred hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 347 ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 347 ~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
......|..+. .++|||||||.+... ....|+..|.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~--------------~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE--------------QQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH--------------HHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH--------------HHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 33455676664 369999999998432 34455555543 23456788999874
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.32 E-value=1.7e-12 Score=122.37 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=80.1
Q ss_pred ccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhH
Q 004921 270 DVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASR 349 (723)
Q Consensus 270 dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~ 349 (723)
+++|.++..+.+.+.+..+. ..+.++||+||||||||++|++++...+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899888888887776532 2345799999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 350 VRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 350 vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
...+|+.+. .++|||||+|.+... ....|+..++... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN--------------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH--------------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH--------------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666654 469999999998432 2334444444322 3457888888865
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.31 E-value=5.8e-12 Score=146.22 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=86.0
Q ss_pred CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-------------------CCCCceEEEEeeCCC--CC
Q 004921 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-------------------SGNSGVIVLAATNRP--DV 419 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-------------------~~~~~ViVIaaTN~p--~~ 419 (723)
.+.+|||||+|.+.+ ...+.|+..|+.- .....+.||++||+. +.
T Consensus 201 ~~gvL~LDEi~~l~~--------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL--------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTSEEEETTGGGSCH--------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred CCCEEEEechhhCCH--------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 456999999999832 2444555554411 112357899999986 57
Q ss_pred CCccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhcC-------CCCCccccHHHHHhh---CCCC------CHHH
Q 004921 420 LDSALLRPGRFD---RQVTVDR--P-DVAGRVKILQVHSRG-------KALAKDVDFEKISRR---TPGF------TGAD 477 (723)
Q Consensus 420 LD~aLlrpgRfd---~~I~v~~--P-d~~~R~~Il~~~l~~-------~~l~~d~dl~~La~~---t~G~------sgad 477 (723)
++++|++ ||+ ..+.++. + +.+....+++...+. ..+. +..+..|.+. ..|- +.++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls-~eAl~~Li~~~~r~~g~r~~l~~~~R~ 343 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFT-KEAVEEIVREAQKRAGRKGHLTLRLRD 343 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBB-HHHHHHHHHHHHHTTCSTTEEECCHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCC-HHHHHHHHHHHhhhhccccccccCHHH
Confidence 9999999 886 3444432 2 344555555433321 1222 2224444443 3553 7999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004921 478 LQNLMNEAAILAARRDLKEISKDEISDALER 508 (723)
Q Consensus 478 L~~lv~~A~~~A~r~~~~~I~~edl~~Al~~ 508 (723)
+.++++.|...|..++...|+.+|+.+|+.+
T Consensus 344 l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 344 LGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 9999999999998888899999999999854
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.31 E-value=1.7e-11 Score=131.94 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=115.2
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceee-----e---chhh--------HHHHH-----hhhhhhHHHHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFS-----C---AASE--------FVELF-----VGVGASRVRDLFEKAK 358 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~-----i---s~s~--------~~~~~-----~G~~~~~vr~lF~~A~ 358 (723)
+.|.++||+||||+|||++|+++|+.+..+... . +|.. +.... ...+...++++++.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999999987543210 0 0110 10000 0123345777777765
Q ss_pred c----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccc
Q 004921 359 S----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQV 434 (723)
Q Consensus 359 ~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I 434 (723)
. ....|++|||+|.+.. ...|.|+..++. ...++++|.+||.++.+.+.+++ |+ ..+
T Consensus 102 ~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~ 162 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-RLH 162 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred hccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-eee
Confidence 3 3368999999999842 357888888884 44568888889999999999999 66 479
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHH
Q 004921 435 TVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAA 486 (723)
Q Consensus 435 ~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~ 486 (723)
.|++|+.++..++++... .+ ++..+..+++.+.| +++.+.++++.+.
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred eCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 999999999999998765 22 23345667777765 7777777766543
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=103.45 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004921 437 DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 511 (723)
Q Consensus 437 ~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~ 511 (723)
|+||.++|.+||+.|+++..+..++|+..|+..|+||||+||.++|++|++.|.+++...|+.+||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999988889999999999999999999999999999999999999999999999999875
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=104.45 Aligned_cols=78 Identities=24% Similarity=0.516 Sum_probs=73.2
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 004921 435 TVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (723)
Q Consensus 435 ~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g 512 (723)
.-.+||.++|.+||+.++++..+..++|+..||+.|+||||+||.++|++|++.|.++....|+.+||.+|++++..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 446899999999999999999988899999999999999999999999999999999998999999999999998754
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.19 E-value=4.3e-11 Score=103.79 Aligned_cols=79 Identities=30% Similarity=0.560 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCcccc
Q 004921 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNA 518 (723)
Q Consensus 440 d~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~~~~~~ 518 (723)
|.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++....|+.+||..|+.++..|.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999988776553
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.1e-10 Score=124.21 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=104.1
Q ss_pred cchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc------CCceeeechhhHHHHHhhhh
Q 004921 273 GADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA------GVPFFSCAASEFVELFVGVG 346 (723)
Q Consensus 273 G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~------~~p~i~is~s~~~~~~~G~~ 346 (723)
|++++.+.|+..+.. . + +..+|||||||+|||++|+++|+.+ ...++.++.+. ...+
T Consensus 1 g~~~~~~~L~~~i~~---~--------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK---S--------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT---C--------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC---C--------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 556666666655432 1 1 3479999999999999999999874 34566666531 0123
Q ss_pred hhHHHHHHHHHHcC----CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCc
Q 004921 347 ASRVRDLFEKAKSK----APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDS 422 (723)
Q Consensus 347 ~~~vr~lF~~A~~~----aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 422 (723)
...+|++++.+... ...|++|||+|.+.. ...|.||..|+. ....+++|.+|+.++.|.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 45678888888643 237999999999842 357889998884 4456788888888999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHh
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l 452 (723)
++++ | ++.|++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 89999999999999888776
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=2.9e-10 Score=110.66 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCccccccccc-hHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhH
Q 004921 264 TGVTFADVAGA-DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEF 338 (723)
Q Consensus 264 ~~~~f~dv~G~-~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~ 338 (723)
.+.+|+++++. +..++.+..+..++.+.. ...+++++|+||||||||+|++++++.+ |..+++++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 34689998764 334444444444443322 1235789999999999999999999876 778888888887
Q ss_pred HHHHhhhhhh-HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 339 VELFVGVGAS-RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 339 ~~~~~G~~~~-~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
.+.+...... ....+++.. ..|.+|+|||++... .+......+..++.... ..+..+|.+||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCCC
Confidence 7654321110 011222222 257899999998542 13344455666665442 1234677777765
Q ss_pred C
Q 004921 418 D 418 (723)
Q Consensus 418 ~ 418 (723)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 4
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.08 E-value=3.3e-10 Score=148.26 Aligned_cols=170 Identities=18% Similarity=0.301 Sum_probs=110.0
Q ss_pred CcceEEeCCCCCcHHHHH-HHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHH---------------cCCCeEE
Q 004921 302 PKGCLLVGPPGTGKTLLA-RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAK---------------SKAPCIV 365 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LA-ralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~---------------~~aP~IL 365 (723)
.+++||+||||||||++| ++++...+.+++.++++...+ ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 468999999999999999 555555577888887764332 123333333321 1335899
Q ss_pred EEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCC-C-------CceEEEEeeCCCC-----CCCccccCCCCccc
Q 004921 366 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSG-N-------SGVIVLAATNRPD-----VLDSALLRPGRFDR 432 (723)
Q Consensus 366 fIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~-~-------~~ViVIaaTN~p~-----~LD~aLlrpgRfd~ 432 (723)
||||+|.-...+. +.......+.++++. .++.. . .++.+|+|+|+|. .|+++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999987433221 222344556666532 22211 1 2589999999994 79999999 88 8
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCC-CCcccc-------------HHHHHhh-------CCCCCHHHHHHHHHHHH
Q 004921 433 QVTVDRPDVAGRVKILQVHSRGKA-LAKDVD-------------FEKISRR-------TPGFTGADLQNLMNEAA 486 (723)
Q Consensus 433 ~I~v~~Pd~~~R~~Il~~~l~~~~-l~~d~d-------------l~~La~~-------t~G~sgadL~~lv~~A~ 486 (723)
.+.++.|+.+++..|+..+++... ..+++. +..+... .--|+.+||.++++-..
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll 1486 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVY 1486 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHH
Confidence 899999999999999998775321 111211 1112111 12479999999988653
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.97 E-value=9.4e-10 Score=120.79 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=126.4
Q ss_pred ccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH---
Q 004921 268 FADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL--- 341 (723)
Q Consensus 268 f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~--- 341 (723)
+.+++|.....+++.+.+..+... ...+||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 456777777666666666554322 3468999999999999999998765 479999999865432
Q ss_pred --Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcC-----CCC---
Q 004921 342 --FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDG-----FSG--- 404 (723)
Q Consensus 342 --~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~-----~~~--- 404 (723)
..|... ......|+.|.. .+||||||+.+.. . .+..|+..++. ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~-----------~---~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSL-----------E---AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCH-----------H---HHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCH-----------H---HHHHHHHHHhcCcEEeCCCCce
Confidence 222110 112345666654 4999999999843 2 44444544432 111
Q ss_pred -CCceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHHH----HHHHHHhc----CCCCC----ccccHH
Q 004921 405 -NSGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGRV----KILQVHSR----GKALA----KDVDFE 464 (723)
Q Consensus 405 -~~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R~----~Il~~~l~----~~~l~----~d~dl~ 464 (723)
...+.+|+|||..- . .+.+.|+|.. .+.+..|+..+|. .+++.+++ ..... .+..+.
T Consensus 269 ~~~~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 269 IEVNVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp EECCCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeccEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12578999999732 1 2223344432 3445667776553 33443332 11111 122356
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 465 KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 465 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
.|....+-.+.++|++++++|+..+ ....|+.+|+...+
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 6777777678899999999997654 34578888886543
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.96 E-value=1.1e-09 Score=93.65 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 004921 440 DVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAG 512 (723)
Q Consensus 440 d~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g 512 (723)
|.++|.+||+.|+++.++..++|+..|+..|+||||+||.++|++|++.|.++....|+.+||..|+.++..+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999999988899999999999999999999999999999999988899999999999988653
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.94 E-value=1.5e-09 Score=107.31 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=65.9
Q ss_pred CccccccccchH-hHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH
Q 004921 265 GVTFADVAGADQ-AKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE 340 (723)
Q Consensus 265 ~~~f~dv~G~~~-~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~ 340 (723)
..+|+++++.+. .++.+..+..++.+... ...|++++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 468999988663 33344444444332210 0124789999999999999999999977 77899999988766
Q ss_pred HHhhhh-hhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 341 LFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 341 ~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
.+.... ...+..++..... +.+|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 543211 1112333444333 359999999775
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.86 E-value=7.5e-10 Score=94.58 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 004921 442 AGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGP 513 (723)
Q Consensus 442 ~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~~g~ 513 (723)
++|.+||+.|+++.++..++|+..|+..|+||||+||.++|++|++.|.+++...|+.+||..|+.++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 468999999999998888999999999999999999999999999999999988999999999999876553
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=2.9e-08 Score=110.12 Aligned_cols=210 Identities=20% Similarity=0.152 Sum_probs=122.7
Q ss_pred cccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHH-HHhcCCceeeech--hhHHHHHhhh--
Q 004921 271 VAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV-AGEAGVPFFSCAA--SEFVELFVGV-- 345 (723)
Q Consensus 271 v~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAral-A~e~~~p~i~is~--s~~~~~~~G~-- 345 (723)
|.|++.+|..|.-.+ +....+ .+-.-++||.|+||| ||++|+++ ++-+....+ ..+ +...+ ..+.
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~g-Lt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTD-LTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHH-HSEEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccC-ceEEEE
Confidence 889999876654322 211111 122337999999999 99999999 765543222 221 11000 0000
Q ss_pred ---hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-------CCCCceEEEEeeC
Q 004921 346 ---GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-------SGNSGVIVLAATN 415 (723)
Q Consensus 346 ---~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-------~~~~~ViVIaaTN 415 (723)
+...-...+..|.. .++|||||+.+.+ .++..|++.|+.- .-+..+.||||+|
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 00000112333333 4999999998743 3556666666522 1234679999999
Q ss_pred CCC-----------CCCccccCCCCccccc-ccCCCCHHH-------------HHHHHHHHhc----CCCCCcccc----
Q 004921 416 RPD-----------VLDSALLRPGRFDRQV-TVDRPDVAG-------------RVKILQVHSR----GKALAKDVD---- 462 (723)
Q Consensus 416 ~p~-----------~LD~aLlrpgRfd~~I-~v~~Pd~~~-------------R~~Il~~~l~----~~~l~~d~d---- 462 (723)
..+ .|++++++ |||..+ .++.|+.+. .++++. +.+ ...+.+++.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHH
Confidence 865 78899999 998744 445555432 122221 223 222222210
Q ss_pred -----HHHHH-h------hCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004921 463 -----FEKIS-R------RTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERII 510 (723)
Q Consensus 463 -----l~~La-~------~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~~ 510 (723)
...-. . ...|.|++.+..+++-|...|..+.+..++.+|+.+|+.-+.
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 01100 0 245889999999999999999999999999999999987543
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.78 E-value=2e-07 Score=99.12 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=112.9
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH------
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF------ 338 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~------ 338 (723)
......++|.++..+.|.+ +.. +.++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3456678998776555544 322 369999999999999999999988777777776532
Q ss_pred -----HHHHhh---h--------------------------------hhhHHHHHHHHHHcC--CCeEEEEcCccchhhh
Q 004921 339 -----VELFVG---V--------------------------------GASRVRDLFEKAKSK--APCIVFIDEIDAVGRQ 376 (723)
Q Consensus 339 -----~~~~~G---~--------------------------------~~~~vr~lF~~A~~~--aP~ILfIDEiD~l~~~ 376 (723)
...+.. . ....+..+++..... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 111000 0 012344555554432 3899999999998541
Q ss_pred cCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCC---------ccccCCCCcccccccCCCCHHHHHHH
Q 004921 377 RGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLD---------SALLRPGRFDRQVTVDRPDVAGRVKI 447 (723)
Q Consensus 377 r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD---------~aLlrpgRfd~~I~v~~Pd~~~R~~I 447 (723)
.. ......+..+... . .++.+|.+++....+. ..+ .||+...+.+++.+.++..++
T Consensus 153 ~~-------~~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 153 RG-------VNLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp TT-------CCCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred Cc-------hhHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 00 1112233333332 1 2455666655432111 112 246667899999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHH
Q 004921 448 LQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNE 484 (723)
Q Consensus 448 l~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~ 484 (723)
++..+.......+ +...+...+.| .+.-+..++..
T Consensus 218 l~~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 9877643222222 23778888877 67767666554
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.75 E-value=2.2e-09 Score=114.05 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=70.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeech--hhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcC
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA--SEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~--s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~ 378 (723)
..+.++|+||||||||+||.++|.+.|.++++++. .+..+.+.......+..+++...... +||||+++.+.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAG 199 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC----
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccc
Confidence 33457999999999999999999876555444443 22222222233344555555555544 999999999865432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccc
Q 004921 379 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSAL 424 (723)
Q Consensus 379 ~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 424 (723)
... ......+.+.+++..|.++....++.+|.++| +...|+++
T Consensus 200 ~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 200 GNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 100 00111345666666666555455678888888 55566654
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.74 E-value=5.2e-07 Score=95.75 Aligned_cols=190 Identities=20% Similarity=0.189 Sum_probs=110.6
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH------
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV------ 339 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~------ 339 (723)
..-..++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ .+++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 4456789998877777665542 1 4799999999999999999999886 5666654321
Q ss_pred ------HHHh--------------------hhh----hhHHHHHHHHH----HcCCCeEEEEcCccchhhhcCCCCCCCC
Q 004921 340 ------ELFV--------------------GVG----ASRVRDLFEKA----KSKAPCIVFIDEIDAVGRQRGAGLGGGN 385 (723)
Q Consensus 340 ------~~~~--------------------G~~----~~~vr~lF~~A----~~~aP~ILfIDEiD~l~~~r~~~~~~~~ 385 (723)
..+. +.. ...+..+++.. ....|.+|+|||++.+..... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cch
Confidence 1111 000 01233333332 222389999999999853100 001
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC---------CccccCCCCcccccccCCCCHHHHHHHHHHHhcCCC
Q 004921 386 DEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL---------DSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKA 456 (723)
Q Consensus 386 ~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L---------D~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~ 456 (723)
......+..+ ++.. .++.+|.++.....+ ...+. ||+...+.+++.+.++..++++..+....
T Consensus 149 ~~~~~~L~~~---~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 KELLALFAYA---YDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHH---HHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHH---HHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1222233333 3321 245555554432111 11222 46667899999999999999987765433
Q ss_pred CC-ccccHHHHHhhCCCCCHHHHHHHHHH
Q 004921 457 LA-KDVDFEKISRRTPGFTGADLQNLMNE 484 (723)
Q Consensus 457 l~-~d~dl~~La~~t~G~sgadL~~lv~~ 484 (723)
.. .+..+..+...+.| .+.-+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 22 22345677777876 66666665543
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=5.7e-09 Score=99.18 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=64.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 378 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~ 378 (723)
...++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4579999999999999999999977 777888887765432 11235789999999886321
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC-CCCCCC--ccccCCCCccccc
Q 004921 379 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN-RPDVLD--SALLRPGRFDRQV 434 (723)
Q Consensus 379 ~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN-~p~~LD--~aLlrpgRfd~~I 434 (723)
..+.+..++..+. .....++|.+|| .|+.+. +.+.+ |+..-.
T Consensus 99 ---------~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 99 ---------EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp ---------HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred ---------HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 1334444444332 122222344555 455443 67776 664433
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.70 E-value=1.1e-08 Score=108.95 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=62.4
Q ss_pred Cccccccccch-HhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHH
Q 004921 265 GVTFADVAGAD-QAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV 339 (723)
Q Consensus 265 ~~~f~dv~G~~-~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~ 339 (723)
+.+|+++.+.+ ..+..+..+..++.+.. ...+++++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 35899988654 22223333334433211 1135789999999999999999999855 4889899988887
Q ss_pred HHHhhhh-hhHHHHHHHHHHcCCCeEEEEcCccch
Q 004921 340 ELFVGVG-ASRVRDLFEKAKSKAPCIVFIDEIDAV 373 (723)
Q Consensus 340 ~~~~G~~-~~~vr~lF~~A~~~aP~ILfIDEiD~l 373 (723)
..+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6543311 111222233332 2469999999765
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.70 E-value=1.8e-08 Score=109.87 Aligned_cols=189 Identities=22% Similarity=0.359 Sum_probs=114.4
Q ss_pred cccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhhHHH-----H
Q 004921 269 ADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASEFVE-----L 341 (723)
Q Consensus 269 ~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~~~~-----~ 341 (723)
.+++|......++.+.+..+.. ....+|++|++||||+++|+++....+. +|+.++|+.+-+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3577887777777766655432 1235999999999999999999887643 399999975432 1
Q ss_pred Hhhhhh-------hHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCC-----CCC----
Q 004921 342 FVGVGA-------SRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGF-----SGN---- 405 (723)
Q Consensus 342 ~~G~~~-------~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~-----~~~---- 405 (723)
..|... ..-...|+.|.. ..||||||+.+.. . .+..||..++.- ..+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~-----------~---~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQ-----------R---VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCH-----------H---HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCH-----------H---HHHHHHHHHHhCCcccCCCCccee
Confidence 222110 111235666654 4999999999843 2 444555554321 111
Q ss_pred CceEEEEeeCCCCCCCccccCCCCccc-------ccccCCCCHHHH----HHHHHHHhcC----C-----CCCccccHHH
Q 004921 406 SGVIVLAATNRPDVLDSALLRPGRFDR-------QVTVDRPDVAGR----VKILQVHSRG----K-----ALAKDVDFEK 465 (723)
Q Consensus 406 ~~ViVIaaTN~p~~LD~aLlrpgRfd~-------~I~v~~Pd~~~R----~~Il~~~l~~----~-----~l~~d~dl~~ 465 (723)
..+.+|++||.. +. .....|+|.. .+.+..|...+| ..+++.+++. . .++ +..+..
T Consensus 262 ~~~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~ 337 (368)
T 3dzd_A 262 VDIRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS-EETKEY 337 (368)
T ss_dssp CCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC-HHHHHH
T ss_pred eeeEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC-HHHHHH
Confidence 246789999963 22 2223344433 344555666554 3444444321 1 122 223567
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHH
Q 004921 466 ISRRTPGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 466 La~~t~G~sgadL~~lv~~A~~~ 488 (723)
|....+..+.++|++++++|+..
T Consensus 338 L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 338 LMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 77777767899999999998754
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.54 E-value=4e-08 Score=97.96 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=82.7
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHh--------cC-CceeeechhhHHHHHh----------hh-----hhhHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGE--------AG-VPFFSCAASEFVELFV----------GV-----GASRVRDLFEK 356 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e--------~~-~p~i~is~s~~~~~~~----------G~-----~~~~vr~lF~~ 356 (723)
.+.-.|++|+||||||++|.+++.. .| .+++..++.++.-... .. ....+.+++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3456899999999999999886433 35 7777777655432111 00 11222222211
Q ss_pred HHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccccc
Q 004921 357 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV 436 (723)
Q Consensus 357 A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v 436 (723)
.....+||+|||++.+.+.+.... +. ..++..+.. ....++-+|.+|+.++.|+.++++ |++.++++
T Consensus 84 -~~~~~~vliIDEAq~l~~~~~~~~----e~-----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 -PENIGSIVIVDEAQDVWPARSAGS----KI-----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp -GGGTTCEEEETTGGGTSBCCCTTC----CC-----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred -cccCceEEEEEChhhhccCccccc----hh-----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 234468999999999976543211 11 135555553 334566778888889999999988 99999999
Q ss_pred CCCCHHH
Q 004921 437 DRPDVAG 443 (723)
Q Consensus 437 ~~Pd~~~ 443 (723)
..|....
T Consensus 151 ~~~~~~~ 157 (199)
T 2r2a_A 151 ASNKMGM 157 (199)
T ss_dssp EECSSCC
T ss_pred cCcccCc
Confidence 8765543
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.50 E-value=8e-08 Score=104.89 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=79.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH-HHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhh-
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV-ELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGR- 375 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~-~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~- 375 (723)
+...++.++|+||||+|||+|++++++..+..++.+...+-. ..++| .....+++++||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg-------------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG-------------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHG-------------GGTTCSCEEETTCCCSTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHH-------------HhcchhHHHHHHHHHHHHH
Confidence 667777899999999999999999999887776654432210 00111 112346789999999875
Q ss_pred hcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCC
Q 004921 376 QRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 438 (723)
Q Consensus 376 ~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~ 438 (723)
.+... .+. .. .....+...++| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 123445555664 24578889999999 79999999998887744
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.46 E-value=2.2e-06 Score=112.77 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=108.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 382 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~ 382 (723)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... .+.+++|||+.+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh-------
Confidence 57899999999999999999999999999999986443 23445667666544 37999999998733
Q ss_pred CCChHHHHHHHHHHHh----hcC-----------CCCCCceEEEEeeCC----CCCCCccccCCCCcccccccCCCCHHH
Q 004921 383 GGNDEREQTINQLLTE----MDG-----------FSGNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVAG 443 (723)
Q Consensus 383 ~~~~~~~~~ln~LL~~----ld~-----------~~~~~~ViVIaaTN~----p~~LD~aLlrpgRfd~~I~v~~Pd~~~ 443 (723)
+...++++.+.. +.. +.-+....|++|.|. ...|+++|++ || +.+.+..||.+.
T Consensus 712 ----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 712 ----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 333444333332 211 112345677888884 3469999998 88 789999999998
Q ss_pred HHHHHHHHhcCCCCCccc-----cHHH-HHhhC-----CCCCHHHHHHHHHHHHHH
Q 004921 444 RVKILQVHSRGKALAKDV-----DFEK-ISRRT-----PGFTGADLQNLMNEAAIL 488 (723)
Q Consensus 444 R~~Il~~~l~~~~l~~d~-----dl~~-La~~t-----~G~sgadL~~lv~~A~~~ 488 (723)
..+|+-... +....... .+-. +.+.. ..|.-+.+..++..|...
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 888754322 21111110 1111 11111 236789999888877544
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.46 E-value=3.5e-07 Score=116.68 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH----HHHhh------------hhhhHHHHHHHHHH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVG------------VGASRVRDLFEKAK 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~----~~~~G------------~~~~~vr~lF~~A~ 358 (723)
|+..+++++|+||||||||+||.+++.++ |....+++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46778899999999999999999998775 4455555554321 12223 23456677777888
Q ss_pred cCCCeEEEEcCccchhhhc---CCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 359 SKAPCIVFIDEIDAVGRQR---GAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r---~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
..+|++|||||++.+.+.. +...........+.++++|.+|.++....+++||.+-.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 8999999999999988743 22111111124567888888888877677777766543
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=1e-06 Score=87.81 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+++||+||||||||++|.++|+.++..++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 589999999999999999999998655443
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.08 E-value=1.7e-05 Score=84.94 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=115.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CC-ce--eeechhhHHHHHhhhhhhHHHHHHHHHHc----CCCeEEEEcC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GV-PF--FSCAASEFVELFVGVGASRVRDLFEKAKS----KAPCIVFIDE 369 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~-p~--i~is~s~~~~~~~G~~~~~vr~lF~~A~~----~aP~ILfIDE 369 (723)
+.+..+||+||+|.||+..++.+++.+ +. ++ +.++. ...++++++.+.. ....|++|||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 346679999999999999999998864 22 22 22221 1334555555542 3457999999
Q ss_pred ccc-hhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC------CCCccccCCCCcccccccCCCCHH
Q 004921 370 IDA-VGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD------VLDSALLRPGRFDRQVTVDRPDVA 442 (723)
Q Consensus 370 iD~-l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~------~LD~aLlrpgRfd~~I~v~~Pd~~ 442 (723)
+|. +.. ...+.|+..++... .++++|.+++.++ .+-+++.+ |. .++.+.+++..
T Consensus 85 ~~~kl~~--------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~ 145 (343)
T 1jr3_D 85 PENGPNA--------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQA 145 (343)
T ss_dssp CSSCCCT--------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTT
T ss_pred CCCCCCh--------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHH
Confidence 988 632 15667777777433 3445554444432 35677777 43 57889899998
Q ss_pred HHHHHHHHHhcCCCCCcc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004921 443 GRVKILQVHSRGKALAKD-VDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 509 (723)
Q Consensus 443 ~R~~Il~~~l~~~~l~~d-~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al~~~ 509 (723)
+....++..++..++.-+ ..+..++..+.| +.+++.+.++.....+ +...|+.+++.+.+...
T Consensus 146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 888888887765554322 235667777665 7777777777665442 34579999998887653
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.01 E-value=9.7e-06 Score=90.63 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=97.8
Q ss_pred CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe---------eC---CCCCCCccccCCCC
Q 004921 362 PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA---------TN---RPDVLDSALLRPGR 429 (723)
Q Consensus 362 P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa---------TN---~p~~LD~aLlrpgR 429 (723)
|.|+||||+|.+. ....+.|+..|+.... .++++++ |+ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999983 2478889998885433 3544455 32 16789999999 8
Q ss_pred cccccccCCCCHHHHHHHHHHHhc--CCCCCccccHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004921 430 FDRQVTVDRPDVAGRVKILQVHSR--GKALAKDVDFEKISRRT-PGFTGADLQNLMNEAAILAARRDLKEISKDEISDAL 506 (723)
Q Consensus 430 fd~~I~v~~Pd~~~R~~Il~~~l~--~~~l~~d~dl~~La~~t-~G~sgadL~~lv~~A~~~A~r~~~~~I~~edl~~Al 506 (723)
|.. +.+++|+.++..++++..+. +..+++ ..+..+++.. .| +++...++++.|...|..++...|+.+|+.+++
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~-~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISE-EALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 866 69999999999999998764 333322 2356677766 55 999999999999999998899999999999998
Q ss_pred HHH
Q 004921 507 ERI 509 (723)
Q Consensus 507 ~~~ 509 (723)
..+
T Consensus 435 ~~~ 437 (456)
T 2c9o_A 435 ELF 437 (456)
T ss_dssp HHS
T ss_pred HHh
Confidence 653
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.00 E-value=1.4e-05 Score=105.98 Aligned_cols=137 Identities=21% Similarity=0.275 Sum_probs=86.3
Q ss_pred CcceEEeCCCCCcHHHHHHHH-HHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHH----H------------cCCCeE
Q 004921 302 PKGCLLVGPPGTGKTLLARAV-AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA----K------------SKAPCI 364 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAral-A~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A----~------------~~aP~I 364 (723)
.+.+||+||||||||++++.. ++..+.+++.++++.-.+ ...+...++.. + .+...|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 357999999999999877654 444466777777764322 12222233221 0 122369
Q ss_pred EEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC-------CCCceEEEEeeCCCC-----CCCccccCCCCccc
Q 004921 365 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS-------GNSGVIVLAATNRPD-----VLDSALLRPGRFDR 432 (723)
Q Consensus 365 LfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~-------~~~~ViVIaaTN~p~-----~LD~aLlrpgRfd~ 432 (723)
+||||++.-.... -+.......+.+++..-.-+. .-.++.+|+|.|.|. .|+++++| || .
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-P 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-C
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-e
Confidence 9999998532211 112234445555554311011 123578999999883 59999999 88 4
Q ss_pred ccccCCCCHHHHHHHHHHHh
Q 004921 433 QVTVDRPDVAGRVKILQVHS 452 (723)
Q Consensus 433 ~I~v~~Pd~~~R~~Il~~~l 452 (723)
.+.++.|+.+....|+..++
T Consensus 1450 vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 59999999999999977554
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.83 E-value=2.8e-05 Score=75.80 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCce
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPF 330 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~ 330 (723)
.+.|.||+|+|||+|++.+++..++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 378999999999999999999876544
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.78 E-value=3.5e-05 Score=76.22 Aligned_cols=39 Identities=21% Similarity=0.071 Sum_probs=30.8
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
+....-++|+||||+|||+|++.++...+.++++++..+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344456899999999999999999986677777776543
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.78 E-value=5.3e-05 Score=100.55 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=88.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHHHHhhhhhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 382 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~~~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~ 382 (723)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|..+... .+-.++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCH-------
Confidence 456899999999999999999999999999999864432 2344456555443 36899999998732
Q ss_pred CCChHHHHHHHHHHHhh-------------c-C--CCCCCceEEEEeeCC----CCCCCccccCCCCcccccccCCCCHH
Q 004921 383 GGNDEREQTINQLLTEM-------------D-G--FSGNSGVIVLAATNR----PDVLDSALLRPGRFDRQVTVDRPDVA 442 (723)
Q Consensus 383 ~~~~~~~~~ln~LL~~l-------------d-~--~~~~~~ViVIaaTN~----p~~LD~aLlrpgRfd~~I~v~~Pd~~ 442 (723)
+...++.+.+..+ + | +.-+....|++|.|. ...|+++|+. || +.|.+..||.+
T Consensus 671 ----~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 671 ----RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 3333333322211 1 1 122345677888884 3479999998 88 67999999999
Q ss_pred HHHHHHH
Q 004921 443 GRVKILQ 449 (723)
Q Consensus 443 ~R~~Il~ 449 (723)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877753
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.72 E-value=4.9e-05 Score=78.76 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=23.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV 328 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~ 328 (723)
.++++|+||||||||++|++||+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 358999999999999999999997643
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.69 E-value=6.1e-05 Score=74.89 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
.....++|+||||+|||+|++.++... +.++++++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 334468999999999999999998653 455555543
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=8.8e-05 Score=74.52 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=48.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhh------HHHHH--hhh---------------h
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASE------FVELF--VGV---------------G 346 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~------~~~~~--~G~---------------~ 346 (723)
+....-++|+||||+|||+|++.++... +...++++..+ +.... .+. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3444568999999999999999999852 34566666543 11110 110 0
Q ss_pred h----hHHHHHHHHHHcCCCeEEEEcCccchhh
Q 004921 347 A----SRVRDLFEKAKSKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 347 ~----~~vr~lF~~A~~~aP~ILfIDEiD~l~~ 375 (723)
. ..+..+.+......|.+|+|||+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0 1122233444456799999999998764
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.63 E-value=0.00079 Score=77.10 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=95.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc-------CCceeeechhh-
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA-------GVPFFSCAASE- 337 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~-------~~p~i~is~s~- 337 (723)
.....++|.+...+.|.+.+.... ..++-++|+||+|+|||+||+.++... ...++.++.+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345678999888777666543210 124568999999999999999987532 11233333221
Q ss_pred ----HHHHH------hhh----------hhhHHHHHHHHH-H-cCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 338 ----FVELF------VGV----------GASRVRDLFEKA-K-SKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 338 ----~~~~~------~G~----------~~~~vr~lF~~A-~-~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
+...+ .+. ....+...+... . ...|.+|+||+++... .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--------------------~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--------------------V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------H
Confidence 11111 110 011122222222 2 2368999999997530 1
Q ss_pred HHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCccccccc---CCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCC
Q 004921 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTV---DRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPG 472 (723)
Q Consensus 396 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v---~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G 472 (723)
+.. + ..+..||.||........ . . + ..+.+ +..+.++-.+++..++.............+++.+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 222 2 234566677765432211 1 1 1 22333 467888888999887754221112346788899887
Q ss_pred CCHHHHHHHH
Q 004921 473 FTGADLQNLM 482 (723)
Q Consensus 473 ~sgadL~~lv 482 (723)
.|--|..+.
T Consensus 320 -~PLal~~~a 328 (591)
T 1z6t_A 320 -SPLVVSLIG 328 (591)
T ss_dssp -CHHHHHHHH
T ss_pred -CcHHHHHHH
Confidence 566565443
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.61 E-value=0.0001 Score=80.03 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=65.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH----Hhhh-----------hhhHHHHHHHH-HH
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL----FVGV-----------GASRVRDLFEK-AK 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~----~~G~-----------~~~~vr~lF~~-A~ 358 (723)
|+....-++|+||||+|||+||..++.++ +.++++++...-.+. ..|. ....+....+. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34445569999999999999999988754 667777775432111 1111 11122222322 23
Q ss_pred cCCCeEEEEcCccchhhhcCC-CCCCCC--hHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 359 SKAPCIVFIDEIDAVGRQRGA-GLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~~r~~-~~~~~~--~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
...+++|+||.+..+..+... +..+.. ....+.+.+++..|..+....++.||.+.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 467899999999999742211 000000 01224456666666544445556666553
No 118
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=4.5e-05 Score=82.32 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH----HHhhhhhh--------HHHHHHH----HHHc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVGAS--------RVRDLFE----KAKS 359 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----~~~G~~~~--------~vr~lF~----~A~~ 359 (723)
+....-++|+||||+|||+|+..++..+ +.++++++...-.. ...|.... .+.++++ .++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3444569999999999999999998654 55666666542111 11121100 1222222 2335
Q ss_pred CCCeEEEEcCccchhh
Q 004921 360 KAPCIVFIDEIDAVGR 375 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~ 375 (723)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6799999999999874
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=9.4e-05 Score=78.83 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhhH------HHHH--hhh---------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELF--VGV--------------- 345 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~~------~~~~--~G~--------------- 345 (723)
|+....-++|+||||+|||+++..++..+ +.++++++...- .... .|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 33444568999999999999999998865 456777765431 1110 110
Q ss_pred -hh---hHHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEee
Q 004921 346 -GA---SRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAAT 414 (723)
Q Consensus 346 -~~---~~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaT 414 (723)
.+ ..+..+....+. ..+.+|+||.+..+......+. +......+.+.+++..+..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 00 112233334444 6789999999999875322110 11123334566666666554434445555543
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.57 E-value=0.00024 Score=71.57 Aligned_cols=112 Identities=23% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHH--Hh--cCCceeeechhhHH----HHH--hhh------------------------
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVA--GE--AGVPFFSCAASEFV----ELF--VGV------------------------ 345 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA--~e--~~~p~i~is~s~~~----~~~--~G~------------------------ 345 (723)
....-+.|.||+|+|||+|++.++ .. .+...++++..... ... .|.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 334458999999999999999998 32 23344444322110 000 000
Q ss_pred ------------hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 346 ------------GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 346 ------------~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
.......+........|.+|+|||.-.+..... ........+..++..+. ..++.||.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~v 178 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILT 178 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEE
T ss_pred cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEE
Confidence 011122333334457899999999988764321 12334445666666664 234567777
Q ss_pred eCCCCCC
Q 004921 414 TNRPDVL 420 (723)
Q Consensus 414 TN~p~~L 420 (723)
|+..+..
T Consensus 179 tH~~~~~ 185 (251)
T 2ehv_A 179 TEAPDPQ 185 (251)
T ss_dssp ECCC---
T ss_pred ECCCCCC
Confidence 8776554
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=0.00012 Score=79.22 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH----HHhhhh--------hhHHHHHHHH----HHc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGVG--------ASRVRDLFEK----AKS 359 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----~~~G~~--------~~~vr~lF~~----A~~ 359 (723)
+....-++|+||||+|||+|+..++..+ +.++++++..+... ...|.. ...+.+++.. .+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3344468999999999999999998764 56777776543211 111110 0112222222 234
Q ss_pred CCCeEEEEcCccchhhh-cCCCCCCCC--hHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 360 KAPCIVFIDEIDAVGRQ-RGAGLGGGN--DEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~-r~~~~~~~~--~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
..|.+++||.+..+.+. .-.+..+.. ....+.+.+++..|..+....++.||.+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 67899999999988752 111111111 1234556666666665544555555554
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.55 E-value=0.00019 Score=80.21 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=38.6
Q ss_pred cccccccCCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 256 SKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 256 ~~~~~~~~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
++-+..+..+.+|+++ .+++++.+..++.++.... ..++|.||||||||+++.+++..+
T Consensus 11 ~~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445666778899988 5666777777777665421 269999999999999999998765
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=0.00012 Score=93.73 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHHH----hhh--------hhhHHHHHHHHHHc---
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVELF----VGV--------GASRVRDLFEKAKS--- 359 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~~----~G~--------~~~~vr~lF~~A~~--- 359 (723)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+..... .|. .+..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46666789999999999999999998866 4578998876543332 221 12235555655544
Q ss_pred -CCCeEEEEcCccchhh-hcCCC-CCCCC-hHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 360 -KAPCIVFIDEIDAVGR-QRGAG-LGGGN-DEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 360 -~aP~ILfIDEiD~l~~-~r~~~-~~~~~-~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
..|++||||.++.+.. ....+ .+..+ .-..+.+++++..|..+....++.||++..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999975 22110 01111 1223457888888877766667777766543
No 124
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.0027 Score=78.51 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=100.5
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhc---C--C--ceeeechhh-
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEA---G--V--PFFSCAASE- 337 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~---~--~--p~i~is~s~- 337 (723)
.....++|.++..++|.+.+.... ..++-+.|+|+.|+|||+||+.++... . . .++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 345678999888777766553211 124558899999999999999987752 1 1 122333221
Q ss_pred ----HHHHH------hh----------hhhhHHHHHHHHHHcCC--CeEEEEcCccchhhhcCCCCCCCChHHHHHHHHH
Q 004921 338 ----FVELF------VG----------VGASRVRDLFEKAKSKA--PCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQL 395 (723)
Q Consensus 338 ----~~~~~------~G----------~~~~~vr~lF~~A~~~a--P~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~L 395 (723)
..... .+ .....+.+.+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11100 00 01122333333333333 7899999997541
Q ss_pred HHhhcCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCC-CCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCC
Q 004921 396 LTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR-PDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFT 474 (723)
Q Consensus 396 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~-Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~s 474 (723)
.++.+ ..+..||.||......... . .....+.++. .+.++-.++|..+.....-.......+|++.+.| .
T Consensus 250 --~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g-l 320 (1249)
T 3sfz_A 250 --VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG-S 320 (1249)
T ss_dssp --HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT-C
T ss_pred --HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC-C
Confidence 12222 2344677788766543211 1 2345677775 7888888899877744332222346788999987 4
Q ss_pred HHHHHHH
Q 004921 475 GADLQNL 481 (723)
Q Consensus 475 gadL~~l 481 (723)
|-.|..+
T Consensus 321 PLal~~~ 327 (1249)
T 3sfz_A 321 PLVVSLI 327 (1249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555433
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.42 E-value=0.00024 Score=76.30 Aligned_cols=116 Identities=22% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhhH------HHHH--hhh----------------
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VELF--VGV---------------- 345 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~~------~~~~--~G~---------------- 345 (723)
+....-++|+||||+|||+|+..+|..+ +.++++++...- .... .|.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3444458999999999999999998863 456677765431 1110 110
Q ss_pred hh---hHHHHHHHHHHc--CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeC
Q 004921 346 GA---SRVRDLFEKAKS--KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATN 415 (723)
Q Consensus 346 ~~---~~vr~lF~~A~~--~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN 415 (723)
.. ..+..+....+. ..+.+|+||.+..+....-.+. +....+.+.+.+++..+..+....++.||.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 01 111222333444 6789999999999875421100 111223334566665555444444555655544
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.41 E-value=0.00022 Score=77.11 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=50.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH----HHHhhh-----------hhhHHHHHHHHH-H
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVGV-----------GASRVRDLFEKA-K 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~----~~~~G~-----------~~~~vr~lF~~A-~ 358 (723)
|+...+-++|+||||+|||+||..++.++ +.++++++...-. ....|. ....+.+++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34445569999999999999999998754 6677777763211 111111 112223333322 3
Q ss_pred cCCCeEEEEcCccchhh
Q 004921 359 SKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~ 375 (723)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999999874
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.40 E-value=0.00012 Score=70.17 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=33.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVE 340 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~~ 340 (723)
++-++|+|+||+|||+++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 456899999999999999999999999998877665544
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=0.00023 Score=70.76 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+....-+.|.||+|+|||+|++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334458999999999999999999843
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.29 E-value=0.00025 Score=77.91 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=64.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---------CCceeeechhhH------HH--HHhhhh--------------
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---------GVPFFSCAASEF------VE--LFVGVG-------------- 346 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---------~~p~i~is~s~~------~~--~~~G~~-------------- 346 (723)
|+....-++|+||||+|||+|++.++-.. +...++++..+. .. ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 34444568999999999999999776432 234666665431 00 001100
Q ss_pred -----hhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 347 -----ASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 347 -----~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
...+..+........|.+|+||++-.+.+..-.+ .+....+++.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0112222333444679999999998876532211 11223444555666666655544445666666654
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.24 E-value=0.00051 Score=74.04 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=63.2
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhcC---------CceeeechhhHH--H---HHh---h-------------h--
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEAG---------VPFFSCAASEFV--E---LFV---G-------------V-- 345 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~~---------~p~i~is~s~~~--~---~~~---G-------------~-- 345 (723)
|+....-+.|+||||+|||+|++.++.... -..++++..+.. . ... + .
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 334445589999999999999999998762 344666553210 0 000 0 0
Q ss_pred hhhHHHHHHHH----HHc-----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 346 GASRVRDLFEK----AKS-----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 346 ~~~~vr~lF~~----A~~-----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
......+++.. ... ..|.+|+|||+-++......+. +....+.+.+.+++..+..+....++.||.+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 00111122222 233 5799999999998874321110 1111222344555555444433345566666554
Q ss_pred CC
Q 004921 417 PD 418 (723)
Q Consensus 417 p~ 418 (723)
..
T Consensus 286 ~~ 287 (349)
T 1pzn_A 286 QA 287 (349)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 131
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.21 E-value=0.0018 Score=71.94 Aligned_cols=95 Identities=25% Similarity=0.361 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCC--------CCCceEEEEee----CC
Q 004921 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFS--------GNSGVIVLAAT----NR 416 (723)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~--------~~~~ViVIaaT----N~ 416 (723)
..+...+.|..+ .|||+||||.++...+. .+++...+.++..||..|++-. ..++|++|++. +.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 344555555333 49999999999865331 2333344568889999998742 34678899887 23
Q ss_pred CCCCCccccCCCCcccccccCCCCHHHHHHHHH
Q 004921 417 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQ 449 (723)
Q Consensus 417 p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~ 449 (723)
|..+-|.|+. ||..++.++.++.++..+|+.
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 4445578887 999999999999999999983
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.00042 Score=73.44 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=63.9
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---------------C----CceeeechhhH--HH----HH--hhhh-----
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---------------G----VPFFSCAASEF--VE----LF--VGVG----- 346 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---------------~----~p~i~is~s~~--~~----~~--~G~~----- 346 (723)
++...-++|+||||+|||++|..+|..+ | .++++++...- .+ .. .|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 3444568999999999999999998753 2 46677765431 11 10 1110
Q ss_pred ----------hh----HHHHHHHHHHc-CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEE
Q 004921 347 ----------AS----RVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVL 411 (723)
Q Consensus 347 ----------~~----~vr~lF~~A~~-~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVI 411 (723)
.. .+..+....+. ..+.+|+||.+..+......+. +......+.+.+++..+..+....++.||
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 11223333444 5689999999999875321110 11122334566666666555444455555
Q ss_pred Ee
Q 004921 412 AA 413 (723)
Q Consensus 412 aa 413 (723)
.+
T Consensus 254 ~~ 255 (322)
T 2i1q_A 254 VT 255 (322)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.20 E-value=0.00023 Score=90.14 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=54.3
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHH----HHhhh--------hhhHHHHHHHHHH----
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVE----LFVGV--------GASRVRDLFEKAK---- 358 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~----~~~G~--------~~~~vr~lF~~A~---- 358 (723)
|+.....++|+||||+|||+||..+|.++ +.++++++..+..+ ...|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 45666789999999999999999998765 55788877654321 11221 1113345555554
Q ss_pred cCCCeEEEEcCccchhh
Q 004921 359 SKAPCIVFIDEIDAVGR 375 (723)
Q Consensus 359 ~~aP~ILfIDEiD~l~~ 375 (723)
...|++|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999874
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.17 E-value=0.0014 Score=65.70 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=27.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
|.....-++|+||||+|||+++..++... +.++++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33444568999999999999998886643 556666654
No 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.00085 Score=65.82 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=29.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.+.++|.||||+|||++++.+|+.++.+++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 456999999999999999999999999987654
No 136
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00024 Score=68.51 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++.++|+||||+|||++++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999988654
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00098 Score=69.75 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=40.0
Q ss_pred hHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 275 DQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 275 ~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
++..+.+.+++..+... ......|.-++|.||||+|||++++.++.+.+..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44455556655542221 1123446779999999999999999999988545566666444
No 138
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.0022 Score=64.30 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=27.6
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHh----cCCceeeech
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGE----AGVPFFSCAA 335 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e----~~~p~i~is~ 335 (723)
.....-++|+|+||+|||++|..+|.+ .+.++++++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 344456899999999999999877543 3667777664
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.03 E-value=0.00075 Score=71.53 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=59.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc-----CCceeeechhhHHH----HHhhhhh--------hHHHHH----HHH---HHc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA-----GVPFFSCAASEFVE----LFVGVGA--------SRVRDL----FEK---AKS 359 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~-----~~p~i~is~s~~~~----~~~G~~~--------~~vr~l----F~~---A~~ 359 (723)
-++|+||||+|||+|+..++.++ +..+++++..+-.. .-.|... ....++ .+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999988776543 56777777643211 1112110 112222 222 245
Q ss_pred CCCeEEEEcCccchhhhcCC-CCCCC----ChHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 004921 360 KAPCIVFIDEIDAVGRQRGA-GLGGG----NDEREQTINQLLTEMDGFSGNSGVIVLAA 413 (723)
Q Consensus 360 ~aP~ILfIDEiD~l~~~r~~-~~~~~----~~~~~~~ln~LL~~ld~~~~~~~ViVIaa 413 (723)
.+|.+|+||-|.++.++... +..+. +....+.+++.|..|.++....++.||.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 68999999999999753211 11010 11233456666655544433445555544
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.0012 Score=67.40 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
...|..++|.||||+|||++++.++..++.+++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456779999999999999999999999866676776655
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.00034 Score=67.65 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=30.1
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
...|.-++|.|+||+|||++++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34566799999999999999999999999887664
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.98 E-value=0.0011 Score=68.57 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998643
No 143
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.96 E-value=0.007 Score=61.10 Aligned_cols=161 Identities=27% Similarity=0.347 Sum_probs=82.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh-----hHHHHHhhh---------------hhhHHHHHHHHHHcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS-----EFVELFVGV---------------GASRVRDLFEKAKSK 360 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s-----~~~~~~~G~---------------~~~~vr~lF~~A~~~ 360 (723)
.+++.|+||+|||+++-.+|..+ |..++.++.. +......+. .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 58999999999999999888764 6665544432 111111110 1123333332 3
Q ss_pred CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC--C----------------CCCCc
Q 004921 361 APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR--P----------------DVLDS 422 (723)
Q Consensus 361 aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~--p----------------~~LD~ 422 (723)
.|.+++|||+-..... ...+...-+.+..++. .++=|++|+|- . +.++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6899999998653111 1112222233333222 23446777772 1 23455
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 004921 423 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAA 490 (723)
Q Consensus 423 aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 490 (723)
.++. +.|.+.-++.|..+ +++....++...++..-..+... |+...|..|-.-|....+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 5555 55666777777665 33333334333333222222222 667777666555554444
No 144
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.88 E-value=0.00055 Score=65.92 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=28.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.-++|.|+||+|||++|+.|+..+|.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 34899999999999999999999999887644
No 145
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.86 E-value=0.012 Score=67.00 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=92.6
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHH----hcCCc-----eeeechh------
Q 004921 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAG----EAGVP-----FFSCAAS------ 336 (723)
Q Consensus 272 ~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~----e~~~p-----~i~is~s------ 336 (723)
+|.+..+++|.+.+..-. ...++-+.|+|+.|+|||+||+.+++ ..... ++.++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499888777766553211 12246689999999999999999996 23222 2333321
Q ss_pred hHHHHH---hhhh-------------hhHHHHHHHHHHcC-CCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhh
Q 004921 337 EFVELF---VGVG-------------ASRVRDLFEKAKSK-APCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEM 399 (723)
Q Consensus 337 ~~~~~~---~G~~-------------~~~vr~lF~~A~~~-aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~l 399 (723)
.+.... .+.. ...+...+...... .+++|+||+++... +. .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~~~-~ 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RWAQ-E 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HHHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--cccc-c
Confidence 111111 1111 01123334444344 38999999997641 11 1111 1
Q ss_pred cCCCCCCceEEEEeeCCCCCCCccccCCCCcccccccCCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHhhCCCCCHHH
Q 004921 400 DGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV--DFEKISRRTPGFTGAD 477 (723)
Q Consensus 400 d~~~~~~~ViVIaaTN~p~~LD~aLlrpgRfd~~I~v~~Pd~~~R~~Il~~~l~~~~l~~d~--dl~~La~~t~G~sgad 477 (723)
.+..||.||+...... .. +..+..+.++..+.++-.++|..+........+. ....+++.+.| .|-.
T Consensus 264 ------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-lPLA 332 (549)
T 2a5y_B 264 ------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NPAT 332 (549)
T ss_dssp ------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-CHHH
T ss_pred ------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-ChHH
Confidence 3446777777543211 11 1133568899999999999998875332211111 13566677766 4544
Q ss_pred HH
Q 004921 478 LQ 479 (723)
Q Consensus 478 L~ 479 (723)
|.
T Consensus 333 l~ 334 (549)
T 2a5y_B 333 LM 334 (549)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 146
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.00063 Score=64.27 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=28.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
-++|.||||+|||++++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887665
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00068 Score=65.09 Aligned_cols=33 Identities=33% Similarity=0.664 Sum_probs=29.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++.++|+|+||+|||++++.++..++.+++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 456999999999999999999999998877643
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.81 E-value=0.00063 Score=65.09 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=27.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.++|.||||+|||++++.||+.++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999888754
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.80 E-value=0.0016 Score=70.43 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=57.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc----CCceeeech-hhHH---------HHHhhhhhhHHHHHHHHHHcCCCeEEEEcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA-SEFV---------ELFVGVGASRVRDLFEKAKSKAPCIVFIDE 369 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~-s~~~---------~~~~G~~~~~vr~lF~~A~~~aP~ILfIDE 369 (723)
-+++.||+|+|||++.+++++.. +..++.+.. .++. ....+.....+.+.+..+....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48999999999999999998865 233322211 0110 001111122345578888889999999999
Q ss_pred ccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 370 IDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 370 iD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
+-. ..+...++.... .+..|+.+++..+.+
T Consensus 205 p~d----------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MRD----------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCS----------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCC----------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 831 123333344332 245688888876543
No 150
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.79 E-value=0.00084 Score=64.86 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
..+.-+.|.||||+|||++++.+++..+.+.+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 334568999999999999999999988777777776554
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.78 E-value=0.00072 Score=65.55 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh-cCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE-AGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e-~~~p~i~is 334 (723)
+..++|+|+||||||++++.++.. .|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 346999999999999999999999 787777554
No 152
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00078 Score=64.02 Aligned_cols=31 Identities=32% Similarity=0.703 Sum_probs=27.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+..+.|.||||+|||++++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3468999999999999999999999976664
No 153
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.76 E-value=0.0055 Score=69.81 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=53.5
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC--CCCccccCCCCcccccccCCCC
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVDRPD 440 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~~Pd 440 (723)
.+|+|||++.+.... .......+..+.. ....-||.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar----~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQ----KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHH----HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHH----HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999886531 1233334444443 34467899999999998 78888876 688888898888
Q ss_pred HHHHHHHHH
Q 004921 441 VAGRVKILQ 449 (723)
Q Consensus 441 ~~~R~~Il~ 449 (723)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777763
No 154
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.76 E-value=0.00079 Score=63.88 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
..++|.|+||||||++++.||..+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999988654
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.75 E-value=0.0022 Score=71.41 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
|.....-++|.|+||+|||+|+..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34444568999999999999999987743 567777664
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.00099 Score=65.22 Aligned_cols=35 Identities=37% Similarity=0.567 Sum_probs=29.7
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
..|.-++|.|+||+|||++++.|+..++.+++.++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 34556999999999999999999999998876553
No 157
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.73 E-value=0.00089 Score=65.38 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh---cCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE---AGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e---~~~p~i~i 333 (723)
-++++||+|+|||+++..++.. .+..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999666654 35555443
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.73 E-value=0.0046 Score=69.81 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=51.1
Q ss_pred CCe-EEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCC--CCCccccCCCCcccccccC
Q 004921 361 APC-IVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPD--VLDSALLRPGRFDRQVTVD 437 (723)
Q Consensus 361 aP~-ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlrpgRfd~~I~v~ 437 (723)
-|. +|+|||+..+.... .......+..|.. ....-++.+|.+|.+|. .++..++. -|...|.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar----~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH----HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH----HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998876421 1122233333332 23345788899999987 58877776 677888898
Q ss_pred CCCHHHHHHHHH
Q 004921 438 RPDVAGRVKILQ 449 (723)
Q Consensus 438 ~Pd~~~R~~Il~ 449 (723)
..+..+...|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 899888887764
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.67 E-value=0.0009 Score=64.37 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++-++|.|+||+|||++++.++..++.+++..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 4567999999999999999999999997766543
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.66 E-value=0.0022 Score=73.70 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=55.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH----HHHhhhhhhHHHHHHHHH---------HcCCCeEEE
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV----ELFVGVGASRVRDLFEKA---------KSKAPCIVF 366 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~----~~~~G~~~~~vr~lF~~A---------~~~aP~ILf 366 (723)
+.++|+||||||||+++++++..+ +.+++.+..+.-. ....+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999997744 6666655332211 111222222333333111 012347999
Q ss_pred EcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 367 IDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 367 IDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
|||+..+.. ..+..|+..+. ....+++++-.+.
T Consensus 285 IDEasml~~--------------~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMGD--------------ALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCCH--------------HHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCCH--------------HHHHHHHHhCc---CCCEEEEEecccc
Confidence 999977622 24555555443 4456777775554
No 161
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.00092 Score=64.41 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=27.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|.-++|.|+||+|||++++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999877543
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.65 E-value=0.0013 Score=64.48 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=28.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++-++|.|+||+|||++++.|++.+|.+++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 557999999999999999999999998777643
No 163
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.63 E-value=0.0035 Score=64.29 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh---cCCceeeechhhHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE---AGVPFFSCAASEFV 339 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e---~~~p~i~is~s~~~ 339 (723)
+.-++|.|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 345899999999999999999997 78888866665554
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.63 E-value=0.00075 Score=64.26 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=25.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHH-hcCCceee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAG-EAGVPFFS 332 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~-e~~~p~i~ 332 (723)
|.-++|.||||+|||++|+.++. ..+.+++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 45689999999999999999998 55554443
No 165
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.63 E-value=0.0018 Score=67.50 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeec
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCA 334 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is 334 (723)
+....-++|.||||+|||+|++.+|... |.++++++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3334458999999999999999998754 44555543
No 166
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.001 Score=62.60 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
-++|.||||+|||++++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8889887764
No 167
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.61 E-value=0.0072 Score=61.16 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=27.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
.++++||+|+|||.++.+++...+.+++.+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 38999999999999999999888776666554
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.60 E-value=0.0012 Score=62.60 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=28.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+-++|.|+||+|||++++.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999998877543
No 169
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.59 E-value=0.0029 Score=60.64 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.9
Q ss_pred cceEEeCCCCCcHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARA 321 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAra 321 (723)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3488999999999999994
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0013 Score=67.51 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=29.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
-++|.||||+|||++|+.||+..+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 171
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.0034 Score=69.69 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
|..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44444568999999999999999887643 567777765
No 172
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0012 Score=63.76 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.-++|.|+||+|||++++.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 456999999999999999999999998876544
No 173
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.52 E-value=0.0016 Score=65.82 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=43.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh-------HHHHHhhh-----hhhHHHHHHHHHHc----CCCeE
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE-------FVELFVGV-----GASRVRDLFEKAKS----KAPCI 364 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~-------~~~~~~G~-----~~~~vr~lF~~A~~----~aP~I 364 (723)
-++++||+|+|||+++..++..+ +..++.+.... +.+. .|. ......++++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 36889999999999998887655 55665553221 1110 111 01122456666665 34789
Q ss_pred EEEcCccch
Q 004921 365 VFIDEIDAV 373 (723)
Q Consensus 365 LfIDEiD~l 373 (723)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.51 E-value=0.0014 Score=65.16 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+.-++|.|+||+|||++++.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999877654
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.0012 Score=63.59 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=27.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.-++|.|+||+|||++++.+++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4589999999999999999999999776654
No 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.47 E-value=0.0015 Score=64.71 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=26.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++|.||||+|||++|+.|+.+++.+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 789999999999999999999988777653
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.0014 Score=63.64 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.-++|.|+||+|||++++.++..++.+++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 456999999999999999999999997766543
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.45 E-value=0.0013 Score=63.02 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=23.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
|.-++|.|+||+|||++++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.45 E-value=0.0016 Score=61.43 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++|.|+||+|||++++.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999998877543
No 180
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0014 Score=65.67 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+.-++|.|+||+|||++++.|+..++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45699999999999999999999999877654
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.45 E-value=0.0077 Score=63.71 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
|..+..-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34444559999999999999999998654 457777664
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.44 E-value=0.0015 Score=64.44 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++|.||||+|||++|+.++..++.+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 789999999999999999999998877553
No 183
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.43 E-value=0.0013 Score=65.35 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=27.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
..++|.|+||+|||++++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999887765
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.43 E-value=0.0017 Score=65.30 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
+.|+-|+|.||||+||+|.|+.|+..+|++.+ +..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 44677899999999999999999999987655 444554
No 185
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.42 E-value=0.0013 Score=63.11 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=23.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.-++|.||||+|||++++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999886
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.42 E-value=0.0024 Score=61.25 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=30.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~ 337 (723)
+.-+.|.|++|+|||++++.+++.+ |.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4458899999999999999999987 99998887543
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.39 E-value=0.0018 Score=65.94 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.|.-++|.||||+|||++|+.|+..++.+++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 4567999999999999999999999987776543
No 188
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.38 E-value=0.0015 Score=65.11 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.|.-++|.||||+|||++++.||..++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345699999999999999999999999766543
No 189
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0019 Score=64.98 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=28.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+..++|.|+||+|||++++.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999877654
No 190
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.38 E-value=0.0018 Score=63.23 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
++-++|.|+||+|||++++.++..++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998776554
No 191
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.35 E-value=0.0022 Score=68.49 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=46.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechhh-H-----HHH--HhhhhhhHHHHHHHHHHcCCCeEEEEcCccc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE-F-----VEL--FVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 372 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s~-~-----~~~--~~G~~~~~vr~lF~~A~~~aP~ILfIDEiD~ 372 (723)
..++|.||+|+|||+|++++++.... -.+.+.... + .+. ++..+..+.+..+..|....|.+|++||...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 45899999999999999999986531 223332211 0 000 1100334667788888888999999999843
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.30 E-value=0.0025 Score=60.76 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=26.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.-++|.||||+|||++++.+++.+|.+++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4589999999999999999999988766653
No 193
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.28 E-value=0.0098 Score=62.79 Aligned_cols=72 Identities=28% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH-------HHHh---h----------hhhhHHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV-------ELFV---G----------VGASRVRDLFEK 356 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~-------~~~~---G----------~~~~~vr~lF~~ 356 (723)
..|+-++|.||+|+|||+++..+|..+ +..+..+++..+. ..|. + .......+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999998854 4444444432111 1111 1 111122334555
Q ss_pred HHcCCCeEEEEcCcc
Q 004921 357 AKSKAPCIVFIDEID 371 (723)
Q Consensus 357 A~~~aP~ILfIDEiD 371 (723)
+....|.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 666778999999874
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.26 E-value=0.0027 Score=62.20 Aligned_cols=31 Identities=35% Similarity=0.647 Sum_probs=26.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+.-+.|.||+|+|||++++.+++.+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568999999999999999999999866554
No 195
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.25 E-value=0.014 Score=57.51 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh---------hHHHHHh-----------------hhhhhHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS---------EFVELFV-----------------GVGASRVRDLF 354 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s---------~~~~~~~-----------------G~~~~~vr~lF 354 (723)
.+++|+++|.|||++|-++|-.+ |..+..+... .+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48999999999999999987654 6666655221 2333320 01123445566
Q ss_pred HHHHc----CCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 355 EKAKS----KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 355 ~~A~~----~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
+.++. ....+|++||+-....-.-- ....++..+.. .....-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-----------~~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-----------PLEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-----------CHHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-----------CHHHHHHHHHh--CcCCCEEEEECCCC
Confidence 66654 44689999999654332111 12234444442 23445677787764
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.22 E-value=0.0066 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.-+.|.||+|+|||+|.+++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999999999999999998653
No 197
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0028 Score=63.08 Aligned_cols=33 Identities=33% Similarity=0.649 Sum_probs=27.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhhHH
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFV 339 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~~ 339 (723)
++|.||||+||+|.|+.||+.+|++.+. ..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is--tGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS--TGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc--HHHHH
Confidence 7899999999999999999999987654 44544
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.014 Score=64.73 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH-------HHHH---hh----------hhhhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELF---VG----------VGASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~-------~~~~---~G----------~~~~~vr~lF~~A 357 (723)
.|.-+++.|++|+|||+++..+|..+ |..+..+++..+ ...+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 555555443221 1111 01 1223346677777
Q ss_pred HcCCCeEEEEcCccc
Q 004921 358 KSKAPCIVFIDEIDA 372 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~ 372 (723)
+.....+|+||....
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 776678999998743
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.12 E-value=0.003 Score=67.21 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=31.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
++.++|.||+|+|||++++.+|+.++.+++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45799999999999999999999999888887653
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.12 E-value=0.006 Score=59.94 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
-+.|+|++|||||++++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4789999999999999999999898887654
No 201
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.10 E-value=0.0027 Score=62.83 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
++|.||||+|||++++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877655
No 202
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.08 E-value=0.0033 Score=60.34 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEF 338 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~ 338 (723)
-++|.|+||+|||++++.|+..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 489999999999999999999775 34555554444
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.07 E-value=0.0018 Score=66.93 Aligned_cols=69 Identities=22% Similarity=0.374 Sum_probs=42.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC----Cceeeechh-hH--------H-HHHhhhhhhHHHHHHHHHHcCCCeEEEEc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAAS-EF--------V-ELFVGVGASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~----~p~i~is~s-~~--------~-~~~~G~~~~~vr~lF~~A~~~aP~ILfID 368 (723)
.-++|.||+|+|||++++++++... ..++..... ++ . ...+|.....++..+..+....|.+|++|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 3589999999999999999988541 222111100 00 0 00011112344666777777789999999
Q ss_pred Ccc
Q 004921 369 EID 371 (723)
Q Consensus 369 EiD 371 (723)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0054 Score=60.08 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
-+.|.||+|+|||++++.+++ +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 88877643
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.06 E-value=0.004 Score=59.88 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=27.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
+.|.|+||+|||++++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88888764
No 206
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.05 E-value=0.0022 Score=69.08 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=28.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
.++|.||||+|||++++++|+.++.+|+.+++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 58999999999999999999999988866543
No 207
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.03 E-value=0.0039 Score=61.85 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
.-+.|.||+|+|||++++.+++.+|++++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4589999999999999999999999877653
No 208
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.03 E-value=0.0029 Score=61.85 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
-+.|.|++|+|||++++.+++ .|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 888777654
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.018 Score=63.66 Aligned_cols=73 Identities=23% Similarity=0.213 Sum_probs=45.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH-------HHHH---hhh----------hhhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELF---VGV----------GASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~-------~~~~---~G~----------~~~~vr~lF~~A 357 (723)
.|+-+++.||+|+|||+++..+|..+ |..+..+++.-+ ...+ .|. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999998754 555544443211 1111 111 111234455566
Q ss_pred HcCCCeEEEEcCccch
Q 004921 358 KSKAPCIVFIDEIDAV 373 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l 373 (723)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6567889999987543
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.99 E-value=0.0051 Score=60.22 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE 337 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~ 337 (723)
.+.-+.|.||+|+|||++++++++.+ |...+.++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34568899999999999999999987 54434555443
No 211
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.92 E-value=0.0042 Score=60.20 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+.|.|+||+|||++++.+++.++.+++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987764
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.91 E-value=0.0049 Score=59.97 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=28.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-CCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is 334 (723)
+.-+.|.|+||+|||++++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777654
No 213
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.91 E-value=0.0039 Score=62.34 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=25.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
++|.||||+|||++++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766544
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.91 E-value=0.005 Score=62.36 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=27.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
|.-+.|.||||+|||++++.|+..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999999876554
No 215
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.89 E-value=0.005 Score=66.82 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=44.1
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcC----Cceeeechh-hH--------H-HHHhhhhhhHHHHHHHHHHcCCCeEE
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAAS-EF--------V-ELFVGVGASRVRDLFEKAKSKAPCIV 365 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~----~p~i~is~s-~~--------~-~~~~G~~~~~vr~lF~~A~~~aP~IL 365 (723)
.....++|.||+|+|||++++++++... ..++.+... ++ + ...+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3344589999999999999999998542 222222110 00 0 00011112234556777777889999
Q ss_pred EEcCcc
Q 004921 366 FIDEID 371 (723)
Q Consensus 366 fIDEiD 371 (723)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 216
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0052 Score=59.90 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=28.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
-+.|.|++|+|||++++.+|+.+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887654
No 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.82 E-value=0.0057 Score=59.04 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
+.|.|++|+|||++++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99887654
No 218
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0049 Score=59.81 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=27.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
|.-+.|.|++|+|||++++.|++. |.+++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 456899999999999999999998 87776543
No 219
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.031 Score=63.27 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=61.9
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhh----HHHHH----------h--h------------hhhh
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASE----FVELF----------V--G------------VGAS 348 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~----~~~~~----------~--G------------~~~~ 348 (723)
....-++|.||+|+|||+|++.+++.. |-+.+++...+ +.... . | .+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 334458999999999999999998754 44444443321 11110 0 0 1233
Q ss_pred HHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCC
Q 004921 349 RVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRP 417 (723)
Q Consensus 349 ~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p 417 (723)
..+.++..+....|.+|+||=+..+... . ........+..++..+. ..++.+|.+++..
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~~--~----~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALARG--V----SNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSS--S----CHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHhh--C----ChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 5566777777788999999965555321 0 01123444555555554 2244555555544
No 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.71 E-value=0.02 Score=69.43 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=32.8
Q ss_pred ccchHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh
Q 004921 272 AGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 272 ~G~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e 325 (723)
+|.+...++|.+.+... ...+-+.|+||.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 88888877777665421 11356899999999999999999863
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.69 E-value=0.0065 Score=61.64 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=28.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|.-+.|.||||+|||++++.+++.++.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 45689999999999999999999999877653
No 222
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.67 E-value=0.0039 Score=61.04 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
+.-++|.|+||+|||++++.++..++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998755433
No 223
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.66 E-value=0.017 Score=58.47 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=26.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+-|.||||+|||++|+.|+..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 67899999999999999999999887654
No 224
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.65 E-value=0.0066 Score=61.80 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=26.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCce
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPF 330 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~ 330 (723)
|.-|.|.|++|+|||++|+.|+..++.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 45689999999999999999999999874
No 225
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.62 E-value=0.0052 Score=63.02 Aligned_cols=32 Identities=38% Similarity=0.708 Sum_probs=28.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
..+.|.|++|+|||++++.+|+.+|.+++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 45999999999999999999999999887654
No 226
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.57 E-value=0.02 Score=64.40 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
|.....-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 44445568999999999999999988754 567777765
No 227
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.57 E-value=0.039 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998877654
No 228
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.52 E-value=0.027 Score=65.06 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+-++++||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999988877543
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.047 Score=57.25 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
.++-++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45678999999999999999998744 545555443
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.50 E-value=0.014 Score=57.19 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
..++-++|.||||+|||++++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999874
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.43 E-value=0.027 Score=62.53 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=29.6
Q ss_pred CCCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 298 GAKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 298 g~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
|..+..-++|.|+||+|||+++..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 44444568999999999999999887654 667777765
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.43 E-value=0.014 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
+.-+.|.||+|+|||++++.|++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998763
No 233
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.40 E-value=0.009 Score=58.99 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
|..+.|.|++|+|||++++.++..+|.+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 346899999999999999999999998877644
No 234
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.40 E-value=0.073 Score=51.51 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=15.5
Q ss_pred cceEEeCCCCCcHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAr 320 (723)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 235
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.38 E-value=0.0053 Score=60.14 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV 328 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~ 328 (723)
|.-++|.|+||+|||++++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999987643
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.37 E-value=0.0067 Score=63.11 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=25.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-CCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-~~p~i~i 333 (723)
|.-++|.|+||+|||++++.++... +.+++..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 4568999999999999999999974 6555433
No 237
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.37 E-value=0.009 Score=59.06 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|.-+.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 44689999999999999999998 88776654
No 238
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.36 E-value=0.0086 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=24.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p 329 (723)
.-++|.|+||+|||++++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999988763
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.35 E-value=0.027 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.++-+.|.||+|+|||+|+++|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999865
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.35 E-value=0.0075 Score=64.47 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=30.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
++-++|.||+|+|||+|+..||+.++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888877654
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.29 E-value=0.0095 Score=62.93 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
.|+-++|.||+|+|||+||..+|...+.+++..+.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 4567899999999999999999999998888776543
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.25 E-value=0.046 Score=61.88 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=61.3
Q ss_pred CcceEEeCCCCCcHHHHHHH--HHHhc--CCceeeechhhHH----HH--Hhhh--------------------------
Q 004921 302 PKGCLLVGPPGTGKTLLARA--VAGEA--GVPFFSCAASEFV----EL--FVGV-------------------------- 345 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAra--lA~e~--~~p~i~is~s~~~----~~--~~G~-------------------------- 345 (723)
..-++|.||+|+|||+|++. +++.. +-..++++..+.. .. ..|.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l 118 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVV 118 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhh
Confidence 34589999999999999999 44532 3344444432210 00 0000
Q ss_pred ----hhhHHHHHHHHHHcCCCeEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 346 ----GASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 346 ----~~~~vr~lF~~A~~~aP~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
-...............|.+|+|||.-.+.+. .+.+......+..++..+.. .++.||.+|+..+.+
T Consensus 119 ~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 119 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 0111223333444567889999999776432 01122334455556665542 245677788877665
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.25 E-value=0.012 Score=58.09 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEF 338 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~ 338 (723)
.+.-++|.|+||+|||++++.+++.+ |.+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568999999999999999999865 466777775443
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.23 E-value=0.017 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
|-|+|.||+|+|||+|++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.014 Score=57.38 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
+.-+.|.||+|+|||+|++.|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999764
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.22 E-value=0.0083 Score=58.83 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=26.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc-CCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA-GVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~-~~p~i~is 334 (723)
.-+.|.||+|+|||++++.+++.+ +++++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347899999999999999999987 66665544
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.22 E-value=0.017 Score=55.59 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=27.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS 336 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s 336 (723)
+.-++|.|+||+|||++++.++..+ +.++..++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4568999999999999999999876 4445555543
No 248
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.21 E-value=0.02 Score=62.97 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.|.-++|+|+||+|||++|+.++..++.+++..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 3456899999999999999999999987666543
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.19 E-value=0.027 Score=58.53 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||||++++++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999843
No 250
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.19 E-value=0.02 Score=56.41 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=41.6
Q ss_pred cceEEeCCCCCcHH-HHHHHHHH--hcCCceeeechh---hHHHH---Hhhh-----hhhHHHHHHHHHHcCCCeEEEEc
Q 004921 303 KGCLLVGPPGTGKT-LLARAVAG--EAGVPFFSCAAS---EFVEL---FVGV-----GASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 303 ~gvLL~GPpGtGKT-~LAralA~--e~~~p~i~is~s---~~~~~---~~G~-----~~~~vr~lF~~A~~~aP~ILfID 368 (723)
+=.++|||.|+||| .|.+++.+ +.+..++.+... .+.+. ..|. ......++++..+. ..+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEEE
Confidence 34789999999999 88888866 346677766533 11111 1111 01122334443332 4699999
Q ss_pred Cccch
Q 004921 369 EIDAV 373 (723)
Q Consensus 369 EiD~l 373 (723)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99877
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.11 E-value=0.049 Score=58.21 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=28.7
Q ss_pred CCCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 299 AKIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 299 ~~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
..+..-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3444458999999999999999998763 677776654
No 252
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.07 E-value=0.013 Score=59.74 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
.-+.|.||+|+|||++++.||+.+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 358899999999999999999999987664
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.013 Score=56.27 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+-+.|.||+|+|||+|++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999865
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.03 E-value=0.015 Score=58.37 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=28.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
+.-+.|.|++|+|||++++.+++.+|++++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 44689999999999999999999999887654
No 255
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.01 E-value=0.053 Score=65.33 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=53.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh-----cCCce--------------eeechhhHHHHHhhhhhhHHHHHHHHHH-cCCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE-----AGVPF--------------FSCAASEFVELFVGVGASRVRDLFEKAK-SKAP 362 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e-----~~~p~--------------i~is~s~~~~~~~G~~~~~vr~lF~~A~-~~aP 362 (723)
.-++|+||.|+|||++.|.++.- .|..+ -.+...+............+++....++ ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 45899999999999999998742 22211 0111111111111111111222222221 4678
Q ss_pred eEEEEcCccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCCCCCC
Q 004921 363 CIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVL 420 (723)
Q Consensus 363 ~ILfIDEiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~p~~L 420 (723)
++|++||.-+= -+......+...++..+.. ..+..+|.+|+..+..
T Consensus 754 ~LlLLDEP~~G---------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 754 SLVILDELGRG---------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CEEEEESTTTT---------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 99999998431 1112233344466665531 2355788889986654
No 256
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.91 E-value=0.012 Score=61.12 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSC 333 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~i 333 (723)
|.-|.|+|++|+|||++++.++ ++|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4468999999999999999999 678776554
No 257
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.88 E-value=0.036 Score=59.87 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|+|||||.+++++-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3789999999999999999984
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.86 E-value=0.015 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.-+.|.||+|+|||++++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999999876
No 259
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.79 E-value=0.053 Score=61.37 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=31.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFVEL 341 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~~~ 341 (723)
|.-|+|.|.||+|||++|+.++..+ +.+...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 4468999999999999999999987 445555666665544
No 260
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.76 E-value=0.02 Score=62.21 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|||||+|.+.|++-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3789999999999999999984
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.75 E-value=0.055 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|+|||+|++++++-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999984
No 262
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.74 E-value=0.13 Score=51.33 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.3
Q ss_pred cceEEeCCCCCcHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVA 323 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA 323 (723)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999998766553
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.73 E-value=0.017 Score=61.02 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=29.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
+-++|.||+|+|||+|+..+|...+..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998877766653
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.71 E-value=0.015 Score=57.48 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.++++|.||+|+|||+||..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998866 666544
No 265
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.70 E-value=0.13 Score=50.55 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=31.4
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LA 319 (723)
..+|+++.-.+.+.+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 35788886566665555432 1333333322211 12357999999999999873
No 266
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.70 E-value=0.061 Score=57.97 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|||||+|.++||+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999999983
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.68 E-value=0.019 Score=55.22 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=25.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechhhH
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEF 338 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s~~ 338 (723)
-++|.||+|+|||++++.+++..+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 234444443
No 268
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.68 E-value=0.055 Score=58.60 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|||||+|.+.||+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3789999999999999999984
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.67 E-value=0.043 Score=53.64 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
+.-+.|.||+|+|||++++.+++.+ +.+++..+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4458899999999999999999865 666665543
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.64 E-value=0.029 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.690 Sum_probs=21.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
++-+.|.||+|+|||+|++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999865
No 271
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.64 E-value=0.016 Score=61.93 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=28.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
+-++|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999977766654
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.47 E-value=0.017 Score=56.62 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=25.5
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC--Cceee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFFS 332 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~ 332 (723)
+.-+.|.||+|+|||++++.+++..+ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34588999999999999999999877 54443
No 273
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.47 E-value=0.021 Score=56.24 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
-|.|.||+|||||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999985
No 274
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.43 E-value=0.083 Score=52.82 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+..+|+++.-.+.+.+.|.+. .+..+..++...+ ...+.+++.+|+|+|||..+-
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred CccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 3446799986555555544331 1333333333211 123579999999999998643
No 275
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.41 E-value=0.097 Score=63.23 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~ 324 (723)
.-++|+||.|+|||++.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999853
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.37 E-value=0.022 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+-+.|.||+|+|||++++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999865
No 277
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.36 E-value=0.2 Score=52.53 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=32.3
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCC----CCcceEEeCCCCCcHHHHHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK----IPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~----~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
.+|+++.-.+.+.+.|++. .+..+..++..... -.+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4577765555555555431 12222222222111 135799999999999998665443
No 278
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.27 E-value=0.057 Score=52.89 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=40.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH---H----HHhhhh-----hhHHHHHHHHHHcCCCeEEEEc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV---E----LFVGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~---~----~~~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (723)
-.+++||+|+|||+.+-.++..+ +..++.+...-.. + ...|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 47899999999999888877654 6665555321100 0 011110 0112355555432 35799999
Q ss_pred Cccch
Q 004921 369 EIDAV 373 (723)
Q Consensus 369 EiD~l 373 (723)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99876
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.26 E-value=0.026 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||++++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 347899999999999999999975
No 280
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.16 E-value=0.2 Score=49.68 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=30.5
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+|+++.-.+.+.+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4688876555555555431 1223333322211 123579999999999998543
No 281
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.11 E-value=0.41 Score=46.73 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=33.1
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHHHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
.+|+|+.-.+++.+.|.+. .+..+..++..... ..+.+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 4688876555555555431 13333333322111 125699999999999987665544
No 282
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.91 E-value=0.042 Score=63.42 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=32.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF 338 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~ 338 (723)
+.-|+|+|+||+|||++|++|+..+ |.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4568999999999999999999998 999998875444
No 283
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.82 E-value=0.3 Score=48.07 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=32.1
Q ss_pred ccCCCccccccccc-hHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHHHH
Q 004921 261 VPETGVTFADVAGA-DQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 261 ~~~~~~~f~dv~G~-~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~LAr 320 (723)
.+++..+|.|..+. .++.+.|.+. .+..+..++..... ..+.+++.+|+|+|||..+-
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 44555678885444 3344333331 13333333332211 23579999999999998644
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.80 E-value=0.12 Score=54.89 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999865
No 285
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.79 E-value=0.23 Score=47.96 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=15.5
Q ss_pred cceEEeCCCCCcHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAr 320 (723)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.77 E-value=0.035 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=15.3
Q ss_pred cceEEeCCCCCcHHHHHHHHH-Hhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVA-GEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA-~e~ 326 (723)
.-+.|.||+|+|||++++.|+ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 347899999999999999999 764
No 287
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.76 E-value=0.2 Score=58.09 Aligned_cols=32 Identities=38% Similarity=0.715 Sum_probs=22.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHh---cCCceeeechh
Q 004921 305 CLLVGPPGTGKTLLARAVAGE---AGVPFFSCAAS 336 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e---~~~p~i~is~s 336 (723)
.||.||||||||+++-.+... .+.+++.+..+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 699999999999865544332 25666666544
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.72 E-value=0.032 Score=58.39 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
..|.-+.|.||+|+|||++++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998764
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.71 E-value=0.091 Score=55.68 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=27.0
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
..++-+++.||+|+|||+++..+|..+ +..+..++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456679999999999999999998754 44554444
No 290
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.68 E-value=0.03 Score=61.17 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=28.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeech
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAA 335 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is~ 335 (723)
+-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999887766554
No 291
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.66 E-value=0.21 Score=59.43 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
.-++|+||.|+|||++.|.++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999873
No 292
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.64 E-value=0.26 Score=49.23 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+-.+|+++.-.+.+.+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3345677765444444444321 1222322222211 113579999999999998743
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.62 E-value=0.037 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999976
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.55 E-value=0.023 Score=64.25 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=44.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC--Cceeeechhh-HHH---HH--------hhhhhhHHHHHHHHHHcCCCeEEEE
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE-FVE---LF--------VGVGASRVRDLFEKAKSKAPCIVFI 367 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~--~p~i~is~s~-~~~---~~--------~G~~~~~vr~lF~~A~~~aP~ILfI 367 (723)
..+++|.||+|+|||++++++++... ...+.+.... +.- .+ .+.....+.++...+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34699999999999999999998763 2233333211 100 00 0111223455666666788999999
Q ss_pred cCcc
Q 004921 368 DEID 371 (723)
Q Consensus 368 DEiD 371 (723)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 295
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.53 E-value=0.036 Score=56.02 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p 329 (723)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 37899999999999999999988754
No 296
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.48 E-value=0.049 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999976
No 297
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.39 E-value=0.18 Score=59.90 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999977777554
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.39 E-value=0.041 Score=53.51 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=28.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceeeechhh
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASE 337 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~is~s~ 337 (723)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888877643
No 299
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.27 E-value=0.26 Score=52.21 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred CcceEEeCCCCCcHHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAV 322 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAral 322 (723)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999866543
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.20 E-value=0.048 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.-+.|.||+|+|||+|+++|++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999763
No 301
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.18 E-value=0.079 Score=55.65 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..+.-+.|.||+|+|||++++.+|+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999865
No 302
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.15 E-value=0.047 Score=54.87 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
-|.|.|++|||||++++.||..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999876
No 303
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.31 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+-|.||.|+|||||.+.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999999854
No 304
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.07 E-value=0.19 Score=55.54 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=44.5
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc----CCceeeechhhHH----H---HH---hh----------hhhhHHHHHHH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAASEFV----E---LF---VG----------VGASRVRDLFE 355 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~s~~~----~---~~---~G----------~~~~~vr~lF~ 355 (723)
..|+.+++.|++|+|||+++-.+|..+ |..+..+++.-+. + .+ .+ .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999999888644 6666655553211 1 01 11 01222356677
Q ss_pred HHHcCCCeEEEEcCc
Q 004921 356 KAKSKAPCIVFIDEI 370 (723)
Q Consensus 356 ~A~~~aP~ILfIDEi 370 (723)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 766444579999874
No 305
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.04 E-value=0.23 Score=51.80 Aligned_cols=73 Identities=32% Similarity=0.301 Sum_probs=44.3
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechh-------hHHHHH---hh----------hhhhHHHHHHHHH
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAAS-------EFVELF---VG----------VGASRVRDLFEKA 357 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s-------~~~~~~---~G----------~~~~~vr~lF~~A 357 (723)
.++.+.+.|++|+|||+++..+|..+ +..+..+++. .....+ .+ ......+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999998754 4444443321 001111 11 0112235566666
Q ss_pred HcCCCeEEEEcCccch
Q 004921 358 KSKAPCIVFIDEIDAV 373 (723)
Q Consensus 358 ~~~aP~ILfIDEiD~l 373 (723)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5556789999997443
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.03 E-value=0.056 Score=56.93 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=23.5
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
+....+.|+||+|+|||+|++.|++...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 3334589999999999999999999763
No 307
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.01 E-value=0.084 Score=58.34 Aligned_cols=35 Identities=37% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
.|+.++++|++|+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35679999999999999999998865 344554443
No 308
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.86 E-value=0.12 Score=51.60 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=22.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4589999999999888776644 66666554
No 309
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.85 E-value=0.3 Score=48.38 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LA 319 (723)
...+|+++.-.+.+.+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346788886555555555431 1333333332211 12357999999999999864
No 310
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.84 E-value=0.049 Score=58.65 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=43.3
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcCC--ceeeechh-hH--------------HHHHhhh-hhhHHHHHHHHHHcCCCe
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAAS-EF--------------VELFVGV-GASRVRDLFEKAKSKAPC 363 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~~--p~i~is~s-~~--------------~~~~~G~-~~~~vr~lF~~A~~~aP~ 363 (723)
...++|.||+|+|||+|++++++.... -.+.+... ++ .+...+. ....+++.+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 346999999999999999999986531 22222210 10 0000111 222456777777778899
Q ss_pred EEEEcCcc
Q 004921 364 IVFIDEID 371 (723)
Q Consensus 364 ILfIDEiD 371 (723)
.++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999974
No 311
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.77 E-value=0.14 Score=64.43 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|+||+|+|||+|++.+.+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 48899999999999999999865
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.75 E-value=0.027 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcC
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~ 327 (723)
+.|.|++|+|||++++.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998774
No 313
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.72 E-value=0.2 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|++.+++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 348899999999999999999844
No 314
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.70 E-value=0.18 Score=52.78 Aligned_cols=71 Identities=27% Similarity=0.223 Sum_probs=43.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhH-------HHHHh---h----------hhhhHHHHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEF-------VELFV---G----------VGASRVRDLFEKAK 358 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~-------~~~~~---G----------~~~~~vr~lF~~A~ 358 (723)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ ...+. | .....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998755 555555443211 11110 1 01122345666665
Q ss_pred cCCCeEEEEcCccc
Q 004921 359 SKAPCIVFIDEIDA 372 (723)
Q Consensus 359 ~~aP~ILfIDEiD~ 372 (723)
.....+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45567999987533
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.69 E-value=0.1 Score=56.17 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 445568999999999999999999865
No 316
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.68 E-value=0.37 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.|+||+|||+++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998764
No 317
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.65 E-value=0.04 Score=57.58 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEF 338 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~ 338 (723)
.-|.|.||+|+|||++++.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3488999999999999999998765 33444444333
No 318
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.62 E-value=0.22 Score=55.38 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=28.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC---CceeeechhhHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG---VPFFSCAASEFV 339 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~---~p~i~is~s~~~ 339 (723)
+.-|+|.|.||+|||++++.+++.++ .+...++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 45699999999999999999998864 445555544443
No 319
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.58 E-value=0.46 Score=50.91 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHHHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLARAV 322 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~LAral 322 (723)
..+|+++.-.+.+.+.|.+. .+..+..++..... ..+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45788876556665555431 13333333322111 1357999999999999766543
No 320
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.55 E-value=0.25 Score=48.45 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.5
Q ss_pred cceEEeCCCCCcHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAr 320 (723)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.11 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.8
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..-+++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 322
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.47 E-value=0.17 Score=57.53 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|+++|++..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
No 323
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.44 E-value=0.075 Score=53.36 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=25.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC--Cceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~--~p~i~i 333 (723)
.-+.|.||||+|||++++.+++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4578999999999999999999875 455443
No 324
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.36 E-value=0.36 Score=48.64 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=30.2
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+|+++.-.+.+.+.|.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 5688875555555444331 1223333332211 123679999999999998643
No 325
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.32 E-value=0.28 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=19.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+-.++.|+||||||++...++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888764
No 326
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.30 E-value=0.25 Score=58.51 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e 325 (723)
..-++|+||.|+|||++.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345899999999999999999863
No 327
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.29 E-value=0.085 Score=60.40 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=30.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC----CceeeechhhH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASEF 338 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~----~p~i~is~s~~ 338 (723)
+.-|+|.|+||+|||++|++|+..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 45689999999999999999999875 78888875443
No 328
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.28 E-value=0.076 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e 325 (723)
.+|+||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 368999999999999999999874
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.28 E-value=0.14 Score=57.68 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeech
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAA 335 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~ 335 (723)
..|+.|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999998654 555555554
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.24 E-value=0.073 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||++++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999865
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.24 E-value=0.11 Score=58.09 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+.-++|.||+|+|||++++.|++.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568899999999999999999865
No 332
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.13 E-value=0.39 Score=56.20 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=16.7
Q ss_pred CcceEEeCCCCCcHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAr 320 (723)
.+.+++.||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4679999999999998873
No 333
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.12 E-value=0.13 Score=58.82 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|++.+++..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999998844
No 334
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.10 E-value=0.14 Score=50.86 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=26.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
.|-|+|..|||||++++.++. .|+|++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999998 899887654
No 335
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.10 E-value=0.44 Score=50.81 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=32.2
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHHHHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLARAVA 323 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~LAralA 323 (723)
..+|+++.-.+.+.+.|.+. .+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45788886555555555431 12223223222111 12569999999999998664433
No 336
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.09 E-value=0.65 Score=49.15 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=31.4
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAralA~ 324 (723)
.+|+++.-.+.+.+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3577765455555554431 1232333332211 1135799999999999987654433
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.06 E-value=0.22 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.|.-+.|.||+|+|||++++.+++.++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455688999999999999999998764
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.05 E-value=0.18 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
-++|.||+|+|||++.+++++...
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 378999999999999999999763
No 339
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.03 E-value=0.13 Score=57.26 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887653
No 340
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.02 E-value=0.39 Score=51.93 Aligned_cols=32 Identities=41% Similarity=0.582 Sum_probs=24.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
++++..|+|+|||..+-.++.+. +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 68999999999999888776553 555555443
No 341
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.93 E-value=0.43 Score=52.50 Aligned_cols=34 Identities=32% Similarity=0.203 Sum_probs=26.2
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
.|..+++.||+|+|||+++..+|..+ +..+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 46678899999999999999998765 44444443
No 342
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=91.93 E-value=0.34 Score=50.04 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=24.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i~is 334 (723)
+.+++.+|+|+|||+.+-..+-+.+...+.+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 46999999999999987666655565555544
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.89 E-value=0.086 Score=55.34 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
.-+.|.||+|+|||+|++.|++..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999765
No 344
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.71 E-value=0.5 Score=50.47 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=29.9
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+|+++.-.+.+.+.|.+. .+..+..++...+ ...+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4677766555555554431 1222322222211 113569999999999998754
No 345
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.70 E-value=0.3 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 348899999999999999999844
No 346
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.64 E-value=0.11 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=21.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..-+.|.||+|+|||++++.+.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998764
No 347
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.41 E-value=0.51 Score=49.11 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=31.3
Q ss_pred CccccccccchHhHHHHHHHHHHhcCchhhhhh-----CCCCCcceEEeCCCCCcHHHHH
Q 004921 265 GVTFADVAGADQAKLELQEVVDFLKNPDKYTAL-----GAKIPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 265 ~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~-----g~~~p~gvLL~GPpGtGKT~LA 319 (723)
..+|+++.-.+.+.+.|... .+..|..++.. -...++.+++.+|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35788876556555555431 13333222221 1123578999999999999864
No 348
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.36 E-value=0.23 Score=56.54 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=29.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC----CceeeechhhHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG----VPFFSCAASEFV 339 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~----~p~i~is~s~~~ 339 (723)
...+.|.|++|+|||+++++|++.++ ..+..++...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 34588999999999999999999874 345456665553
No 349
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.36 E-value=0.74 Score=52.34 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCccccccccchHhHHHHHHHHHH--hcCchhhhhhCCC-----CCcceEEeCCCCCcHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDF--LKNPDKYTALGAK-----IPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~--l~~~~~~~~~g~~-----~p~gvLL~GPpGtGKT~LA 319 (723)
...++|+++........++.+.+.. +..+..++...+. ..+.+++.+|+|+|||+.+
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 3456777775333233344444432 2223333322211 3457999999999999853
No 350
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.29 E-value=1.2 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=18.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~ 324 (723)
+.+++.+|+|+|||..+-..+-
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 4599999999999988765544
No 351
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.24 E-value=0.12 Score=51.84 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-CC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-GV 328 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-~~ 328 (723)
|+-+.|.|++|+|||++++.++..+ +.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458999999999999999999998 44
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.20 E-value=0.12 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.-+.|.||+|+|||||++.|++.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 3457899999999999999999865
No 353
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.19 E-value=0.8 Score=53.46 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=17.4
Q ss_pred CcceEEeCCCCCcHHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLARA 321 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAra 321 (723)
.+.+++.||+|+|||+.+-.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 56899999999999998843
No 354
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.085 Score=52.30 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|+|||+|++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 355
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.10 E-value=0.086 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.829 Sum_probs=21.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 557899999999999999999864
No 356
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.07 E-value=0.06 Score=54.89 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=25.1
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc-CCcee
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA-GVPFF 331 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~-~~p~i 331 (723)
+.-|.|.|++|+|||++++.|+..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4458999999999999999999998 54444
No 357
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.06 E-value=0.076 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999865
No 358
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.06 E-value=0.84 Score=51.39 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.5
Q ss_pred CcceEEeCCCCCcHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LA 319 (723)
.+.+|+.+|+|+|||+.+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 467999999999999853
No 359
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.02 E-value=0.64 Score=56.73 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.7
Q ss_pred cceEEeCCCCCcHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAV 322 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAral 322 (723)
.-++|+||.|+|||++.|.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 56899999999999999998
No 360
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.99 E-value=0.48 Score=48.14 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.4
Q ss_pred cceEEeCCCCCcHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAr 320 (723)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 468999999999998654
No 361
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.98 E-value=0.36 Score=56.35 Aligned_cols=19 Identities=53% Similarity=0.649 Sum_probs=16.6
Q ss_pred CcceEEeCCCCCcHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAr 320 (723)
.+.+++.+|+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3579999999999999874
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.97 E-value=0.13 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+.-+.|.||+|+|||++++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999865
No 363
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.92 E-value=0.079 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|++.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999999853
No 364
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.84 E-value=0.082 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 365
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.82 E-value=2.2 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+.+++.+|+|+|||..+-..+-+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999887665543
No 366
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.68 E-value=0.8 Score=48.42 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCccccccccchHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHHHH
Q 004921 264 TGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 264 ~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~LAr 320 (723)
...+|+++.-.+.+.+.|... .+..+..++..... ..+.+++.+|+|+|||+.+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345788886555555555432 12233333322111 12569999999999998743
No 367
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.43 E-value=0.34 Score=53.40 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=27.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcCCceeeechh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAGVPFFSCAAS 336 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~~p~i~is~s 336 (723)
.+++.+|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888877776666544
No 368
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.36 E-value=0.096 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||||.+++++-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 369
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.35 E-value=0.11 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|.+.+++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 370
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.31 E-value=0.46 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-++|.||+|+|||+|++.|++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999998753
No 371
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.27 E-value=0.2 Score=49.72 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=24.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSC 333 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~i 333 (723)
.-+.|.|++|+|||++++.++..+ +.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 347899999999999999998866 4555544
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.19 E-value=0.36 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..|+|.|.||+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999764
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.19 E-value=0.17 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+-+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999998864
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.18 E-value=0.16 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
-.+|+||.|+|||+++++|..-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988764
No 375
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.11 E-value=0.097 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.10 E-value=0.13 Score=52.27 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 377
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.08 E-value=1.6 Score=46.65 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.7
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCC---CCCcceEEeCCCCCcHHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGA---KIPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~---~~p~gvLL~GPpGtGKT~LA 319 (723)
.+-.+|+++.-.+.+.+.|... .+..|..++...+ ...+.+++.+|+|+|||+.+
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 3345688875455555444331 1223332222211 12357999999999999743
No 378
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.07 E-value=0.11 Score=52.99 Aligned_cols=29 Identities=34% Similarity=0.705 Sum_probs=23.3
Q ss_pred CCCCCcc--eEEeCCCCCcHHHHHHHHHHhc
Q 004921 298 GAKIPKG--CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 298 g~~~p~g--vLL~GPpGtGKT~LAralA~e~ 326 (723)
....+.| +.|.||+|+|||+|.+.+++-.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344443 7899999999999999999865
No 379
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.06 E-value=0.5 Score=53.69 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=30.2
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc---CCceeeechhhHH
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCAASEFV 339 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is~s~~~ 339 (723)
+.-++|+|++|+|||++++.++..+ |.++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568999999999999999999875 4567777765544
No 380
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.94 E-value=0.12 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|.+.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999865
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.94 E-value=0.13 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||.|+|||+|.+.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 382
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.91 E-value=0.11 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|.+.+++..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 348899999999999999999864
No 383
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.86 E-value=0.16 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p 329 (723)
.-+.|.||+|+|||+|++.|++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999987543
No 384
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.84 E-value=0.13 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|.+.+++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 385
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.83 E-value=0.12 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.82 E-value=0.11 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999865
No 387
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.79 E-value=0.14 Score=55.04 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999844
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.76 E-value=0.11 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|++.|++..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 389
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.74 E-value=0.19 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=17.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-|.|.||+|+|||++++.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999876
No 390
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.72 E-value=0.17 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|+|||+|.+.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
No 391
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.72 E-value=0.53 Score=47.45 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=47.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHH---hcCCceeeechh-------hHHHHHhhhh-----hhHHHHHHHHHHcCCCeEEEEc
Q 004921 304 GCLLVGPPGTGKTLLARAVAG---EAGVPFFSCAAS-------EFVELFVGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~---e~~~p~i~is~s-------~~~~~~~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (723)
-.+++||.|+|||+.+-..+. ..|..++.+... .+.+. .|.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 367899999999976655544 335555444311 11111 1110 01112355555 335799999
Q ss_pred CccchhhhcCCCCCCCChHHHHHHHHHHHhhcCCCCCCceEEEEeeCC
Q 004921 369 EIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 416 (723)
Q Consensus 369 EiD~l~~~r~~~~~~~~~~~~~~ln~LL~~ld~~~~~~~ViVIaaTN~ 416 (723)
|+.-+. + +.+++..++. .++-||.+..+
T Consensus 98 EaQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 997761 1 4555666653 34556666554
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.72 E-value=0.15 Score=55.07 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999843
No 393
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.68 E-value=0.16 Score=57.26 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=23.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCC
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGV 328 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~ 328 (723)
..++|.|.+|||||+++++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 394
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.66 E-value=0.15 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999999854
No 395
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.63 E-value=0.13 Score=52.38 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
-+.|.||.|+|||+|.+.+++...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998653
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.56 E-value=0.49 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||||+|||+|.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998754
No 397
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.42 E-value=0.17 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.38 E-value=0.16 Score=55.02 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999843
No 399
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.38 E-value=0.14 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||||.+.+++..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999865
No 400
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.36 E-value=0.13 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|.+.+++-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.32 E-value=0.13 Score=55.12 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999854
No 402
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.32 E-value=0.13 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||.|+|||+|.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999864
No 403
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.13 E-value=0.17 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+.|.||+|+|||+|.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 404
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.10 E-value=0.49 Score=53.84 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=29.0
Q ss_pred chHhHHHHHHHHHHhcCchhhhhhCCCCCcceEEeCCCCCcHHHHHHHHHHh
Q 004921 274 ADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 274 ~~~~k~~L~eiv~~l~~~~~~~~~g~~~p~gvLL~GPpGtGKT~LAralA~e 325 (723)
.+.+.+.+..++..+... .+.+|+.+|+|+|||..+-.++..
T Consensus 180 r~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 180 RYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp CHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 455566666666554321 245899999999999998777654
No 405
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.06 E-value=0.15 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 406
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.02 E-value=3.3 Score=40.91 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=15.0
Q ss_pred cceEEeCCCCCcHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LA 319 (723)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 407
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.98 E-value=1.3 Score=48.68 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=29.4
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhh-----CCCCCcceEEeCCCCCcHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTAL-----GAKIPKGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~-----g~~~p~gvLL~GPpGtGKT~LA 319 (723)
.+|.++.-.+...+.|.+. .+..|..++.. -...++.+|+.+|+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4677776555555444331 12222222221 1123578999999999999874
No 408
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=88.98 E-value=1.4 Score=43.98 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.2
Q ss_pred cceEEeCCCCCcHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAr 320 (723)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998543
No 409
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.88 E-value=0.87 Score=49.89 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=15.2
Q ss_pred cceEEeCCCCCcHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLA 319 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LA 319 (723)
+.+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46899999999999975
No 410
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.85 E-value=2.6 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=18.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+.+++.+|+|+|||..+-..+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999987665543
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.82 E-value=0.13 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.+.|.||+|+|||+|++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999875
No 412
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.79 E-value=1.6 Score=47.60 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCCccccccccchHhHHHHHHHHHHhcCchhhhhhCCC---CCcceEEeCCCCCcHHHH
Q 004921 263 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK---IPKGCLLVGPPGTGKTLL 318 (723)
Q Consensus 263 ~~~~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g~~---~p~gvLL~GPpGtGKT~L 318 (723)
.+-.+|+++.-.+.+.+.|.+. .+..|..++...++ ..+.+++.+|+|+|||+.
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 3445788875455554444321 13333333332211 236799999999999984
No 413
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.74 E-value=0.17 Score=52.08 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=21.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|.+.+++..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999875
No 414
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.70 E-value=0.24 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
No 415
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.43 E-value=0.21 Score=57.65 Aligned_cols=32 Identities=38% Similarity=0.669 Sum_probs=23.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc----CCceeeech
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCAA 335 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~----~~p~i~is~ 335 (723)
..++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999887765543 445555543
No 416
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.39 E-value=0.3 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=23.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p 329 (723)
+-+.|.|++|+|||++++.++..++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 458899999999999999999998754
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.35 E-value=0.13 Score=55.15 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|||||+|.+.||+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999844
No 418
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.27 E-value=1.1 Score=53.00 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCcceEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 301 IPKGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 301 ~p~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
.|..+|+.||.|+|||..+-..+-.. |...+.+.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35679999999999999876544332 54444444
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.26 E-value=1.5 Score=41.35 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-|+|.|++|+|||+|...+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 420
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.06 E-value=0.39 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-++|.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999875
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.05 E-value=0.2 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.||+|||||+|.+.|++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4889999999999999999983
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.99 E-value=0.23 Score=46.22 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+.|.|++|+|||+|.+.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.98 E-value=0.2 Score=47.60 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=19.0
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~ 324 (723)
++|.|++|+|||+|.+.+++
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999987
No 424
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.90 E-value=0.29 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 425
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.86 E-value=0.46 Score=59.70 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~ 326 (723)
+-|+||+|+|||+|++.+.+-.
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEECCCCChHHHHHHHHhcCc
Confidence 6799999999999999998743
No 426
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.84 E-value=0.26 Score=45.18 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|...+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 427
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.83 E-value=0.32 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..++|.|++|+|||+|+.++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998854
No 428
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.75 E-value=1.5 Score=46.60 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=29.7
Q ss_pred ccccccccchHhHHHHHHHHHHhcCchhhhhhC-----CCCCcceEEeCCCCCcHHHHHH
Q 004921 266 VTFADVAGADQAKLELQEVVDFLKNPDKYTALG-----AKIPKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 266 ~~f~dv~G~~~~k~~L~eiv~~l~~~~~~~~~g-----~~~p~gvLL~GPpGtGKT~LAr 320 (723)
.+|+++.-.+...+.|.+. .+..+..++... ...++.+++.+|+|+|||+.+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 4577765555555444331 122222222211 1124679999999999998753
No 429
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=87.74 E-value=3.5 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=19.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.+++.+|.|+|||..+-..+.+.
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Confidence 469999999999999877766544
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.54 E-value=0.27 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+++.|++|+|||+|+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 431
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.47 E-value=0.31 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..+++.|++|+|||+|..++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 432
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.42 E-value=0.31 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 433
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.32 E-value=0.32 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.+++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 434
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.29 E-value=0.27 Score=45.49 Aligned_cols=22 Identities=50% Similarity=0.791 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|.+.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999764
No 435
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=87.21 E-value=1.2 Score=38.67 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=38.4
Q ss_pred CCceechHHHH-HHHHcCCeeEEEEeeCCcEEEEEEeCC------cEEEEECCCChhHHHHHH
Q 004921 139 EGSQWRYSEFL-NAVKKGKVERVRFSKDGSALQLTAVDG------RRATVIVPNDPDLIDILA 194 (723)
Q Consensus 139 ~~~~i~~s~f~-~~~~~~~v~~v~~~~~~~~~~~~~~~~------~~~~~~~p~~~~l~~~l~ 194 (723)
...+|+|++|. ++|++|.|++|.+. +...+.++.+.+ +.+.+.++.-+.+.+.|.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~-nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le 75 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVV-NKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLE 75 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEE-TTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEE-cCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHH
Confidence 44689999999 79999999999886 444556555443 235667776555555553
No 436
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.19 E-value=0.19 Score=52.48 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=23.3
Q ss_pred CCCCCcc--eEEeCCCCCcHHHHHHHHHHhc
Q 004921 298 GAKIPKG--CLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 298 g~~~p~g--vLL~GPpGtGKT~LAralA~e~ 326 (723)
....++| +.|.||.|+|||+|.+.+++..
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344444 7899999999999999999854
No 437
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.17 E-value=1.8 Score=48.33 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.2
Q ss_pred CcceEEeCCCCCcHHHHHH
Q 004921 302 PKGCLLVGPPGTGKTLLAR 320 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAr 320 (723)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4679999999999998743
No 438
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.13 E-value=0.33 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|...+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 439
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.10 E-value=0.89 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..-+.|.|+||+|||+++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998754
No 440
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.08 E-value=0.34 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|.+.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.08 E-value=0.47 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCc
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVP 329 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p 329 (723)
+.|.||+|+|||+|++.|++.....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 7899999999999999999987543
No 442
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.00 E-value=0.3 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-++|.|++|+|||+|.+.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 443
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=86.94 E-value=0.3 Score=49.59 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCCceee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGVPFFS 332 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~p~i~ 332 (723)
+.|+|++|+|||++++.++...|.+.+.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~~~ 31 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVKYQ 31 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 6799999999999999999988987644
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.91 E-value=0.35 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..+++.|++|+|||+|...+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.89 E-value=0.32 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.78 E-value=0.34 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
.-+.|.||.|+|||++++.+++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34789999999999999999987
No 447
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.64 E-value=0.32 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 448
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=86.64 E-value=3.3 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=18.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~ 324 (723)
+++++.+|.|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 4699999999999997766554
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.64 E-value=0.35 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.9
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
+.-+.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998865
No 450
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.57 E-value=0.37 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 451
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.50 E-value=0.37 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|...+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999763
No 452
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.49 E-value=0.34 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCcceEEeCCCCCcHHHHHHHHHHhcCCc-eeeechhhH
Q 004921 300 KIPKGCLLVGPPGTGKTLLARAVAGEAGVP-FFSCAASEF 338 (723)
Q Consensus 300 ~~p~gvLL~GPpGtGKT~LAralA~e~~~p-~i~is~s~~ 338 (723)
.++.-++|+|.||+||+++|+.+....+.. +..++.++-
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 455679999999999999999998877521 333444443
No 453
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.46 E-value=0.38 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 454
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.44 E-value=0.2 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|++.|++..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 358899999999999999999855
No 455
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.42 E-value=0.32 Score=44.80 Aligned_cols=20 Identities=45% Similarity=0.775 Sum_probs=18.6
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 004921 305 CLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~ 324 (723)
+++.|++|+|||+|...+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999999964
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.42 E-value=0.28 Score=46.56 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e 325 (723)
..-+++.|++|+|||+|...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999764
No 457
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.41 E-value=0.37 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..|+|.|++|+|||+|..++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 458
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.39 E-value=0.33 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.4
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-+.|.||+|+|||+|+|.|++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 348999999999999999999864
No 459
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.37 E-value=0.73 Score=45.95 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=35.2
Q ss_pred eEEeCCCCCcHHH-HHHHHHH--hcCCceeeechhhHHHHH--------hhhh-----hhHHHHHHHHHHcCCCeEEEEc
Q 004921 305 CLLVGPPGTGKTL-LARAVAG--EAGVPFFSCAASEFVELF--------VGVG-----ASRVRDLFEKAKSKAPCIVFID 368 (723)
Q Consensus 305 vLL~GPpGtGKT~-LAralA~--e~~~p~i~is~s~~~~~~--------~G~~-----~~~vr~lF~~A~~~aP~ILfID 368 (723)
.+++||.|+|||+ |.+.+-+ +.+..++.+...- -..+ .|.. .....++++.. .....+|+||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~-D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI-DDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc-CCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 5899999999999 5555422 3355555443210 0111 1110 01112333322 2356799999
Q ss_pred Cccch
Q 004921 369 EIDAV 373 (723)
Q Consensus 369 EiD~l 373 (723)
|+.-+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99776
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.24 E-value=0.41 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhcC
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEAG 327 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~~ 327 (723)
+.-+.|.|++|+|||++++.++..++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578889999999999999998653
No 461
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.20 E-value=0.4 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHh
Q 004921 305 CLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e 325 (723)
+++.|++|+|||+|...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 462
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.12 E-value=0.39 Score=50.66 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
+|++|.|++|+|||++|.++.+. |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 58999999999999999999875 44433
No 463
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.09 E-value=0.47 Score=59.42 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+.|.||+|+|||+|++.+++..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.09 E-value=1.7 Score=41.84 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-|+|.|++|+|||+|...+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 465
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.03 E-value=1.4 Score=49.71 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=16.7
Q ss_pred cceEEeCCCCCcHHHHHHHHH
Q 004921 303 KGCLLVGPPGTGKTLLARAVA 323 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA 323 (723)
+.+|+.+|+|+|||+.+..-+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998655433
No 466
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.97 E-value=0.36 Score=50.85 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=22.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhcCCcee
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEAGVPFF 331 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~~~p~i 331 (723)
+|+||.|++|+|||++|..+.. .|..++
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 5899999999999999988865 344443
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.89 E-value=0.37 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-|.|.|++|+|||++++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998865
No 468
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.86 E-value=0.42 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
--|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 469
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.85 E-value=1.3 Score=51.41 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.6
Q ss_pred ceEEeCCCCCcHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAV 322 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAral 322 (723)
-+.|.||+|+|||+|++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 3789999999999999754
No 470
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.84 E-value=0.42 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..+++.|++|+|||+|.+.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998743
No 471
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.83 E-value=0.43 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-+++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.81 E-value=0.42 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999997543
No 473
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.80 E-value=0.36 Score=57.42 Aligned_cols=31 Identities=39% Similarity=0.687 Sum_probs=22.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc----CCceeeec
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA----GVPFFSCA 334 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~----~~p~i~is 334 (723)
-.++.||||||||+++..++..+ +..++.+.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 47999999999999887766543 34454443
No 474
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.78 E-value=0.47 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
.-|++.|++|+|||+|...+.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999763
No 475
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.77 E-value=0.64 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHhc
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
..++++.||+|+|||++++.++...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999887643
No 476
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.59 E-value=0.39 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|...+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 477
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.57 E-value=0.45 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|..++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.57 E-value=0.44 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.|++.|++|+|||+|+..+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 479
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.56 E-value=0.44 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.|++.|++|+|||+|.+.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999874
No 480
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.52 E-value=0.61 Score=45.87 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc--CCceeee
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA--GVPFFSC 333 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~--~~p~i~i 333 (723)
|.|.|+.|+||||+++.++..+ |.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 7789999999999999999876 5555544
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.52 E-value=0.35 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-++|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 482
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.50 E-value=0.36 Score=44.30 Aligned_cols=21 Identities=52% Similarity=0.911 Sum_probs=19.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~ 324 (723)
-+++.|++|+|||+|.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999964
No 483
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.48 E-value=0.44 Score=45.18 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.|+|.|++|+|||+|...+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 484
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.46 E-value=0.53 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..+++.|++|+|||+|...+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999763
No 485
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.35 E-value=0.45 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred CcceEEeCCCCCcHHHHHHHHHHh
Q 004921 302 PKGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 302 p~gvLL~GPpGtGKT~LAralA~e 325 (723)
..-|++.|++|+|||+|...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 486
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.35 E-value=0.41 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
.+++.|++|+|||+|.+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 487
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=85.31 E-value=3.5 Score=50.78 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=22.2
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
+.+|+.||+|+|||+.+-..+-.. +...+++.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~ 234 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 234 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 569999999999999875544333 44444444
No 488
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.30 E-value=0.46 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhc
Q 004921 304 GCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-++|.|++|+|||+|.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999887754
No 489
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.22 E-value=0.83 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
.-++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458888999999999999998875
No 490
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.16 E-value=0.43 Score=44.25 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 004921 304 GCLLVGPPGTGKTLLARAVAG 324 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~ 324 (723)
-+++.|++|+|||+|..++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 491
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.16 E-value=0.56 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHhcCC
Q 004921 305 CLLVGPPGTGKTLLARAVAGEAGV 328 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~~~ 328 (723)
+.|.||+|+|||+|.+.|++....
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 789999999999999999998753
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.12 E-value=0.42 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
--+++.|++|+|||+|.+.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 493
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.96 E-value=0.51 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
..+++.|++|+|||+|...+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999874
No 494
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=84.95 E-value=1.5 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
+.+|++||+|+|||..+-.++..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHH
Confidence 45899999999999998766654
No 495
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.94 E-value=1.9 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+-|.||+|+|||+|++.+++.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999973
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.89 E-value=0.69 Score=45.14 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=24.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHhc---CCceeeec
Q 004921 305 CLLVGPPGTGKTLLARAVAGEA---GVPFFSCA 334 (723)
Q Consensus 305 vLL~GPpGtGKT~LAralA~e~---~~p~i~is 334 (723)
|.|.|+.|+||||.++.++..+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999998865 66766553
No 497
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.85 E-value=0.21 Score=48.18 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.1
Q ss_pred cceEEeCCCCCcHHHHHHHHHHh
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e 325 (723)
.-+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999998764
No 498
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=84.85 E-value=0.44 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-+++.|++|+|||+|.+.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 499
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.79 E-value=0.5 Score=43.92 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.9
Q ss_pred cceEEeCCCCCcHHHHHHHHHHhc
Q 004921 303 KGCLLVGPPGTGKTLLARAVAGEA 326 (723)
Q Consensus 303 ~gvLL~GPpGtGKT~LAralA~e~ 326 (723)
-.+++.|++|+|||+|...+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 500
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.65 E-value=0.51 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHh
Q 004921 304 GCLLVGPPGTGKTLLARAVAGE 325 (723)
Q Consensus 304 gvLL~GPpGtGKT~LAralA~e 325 (723)
-++|.|++|+|||+|...+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
Done!