Query 004922
Match_columns 723
No_of_seqs 592 out of 4059
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 15:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.4E-66 9.6E-71 583.7 61.1 587 70-712 50-675 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-63 2.9E-68 550.2 63.3 513 71-687 370-912 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-63 2.6E-68 550.6 60.9 476 158-682 373-874 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 2.7E-61 5.8E-66 544.8 55.3 563 65-682 115-684 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.5E-59 5.5E-64 516.0 48.6 461 117-686 91-559 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-56 2.6E-61 494.7 53.1 468 71-654 87-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-28 2.4E-33 287.0 64.6 538 59-682 318-864 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-27 3.3E-32 277.4 66.8 539 59-683 284-831 (899)
9 PRK11447 cellulose synthase su 99.9 1.4E-20 3E-25 218.8 64.5 580 59-683 51-739 (1157)
10 PRK11447 cellulose synthase su 99.9 3.2E-19 6.9E-24 207.4 62.9 578 72-687 29-703 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.9E-21 8.6E-26 187.7 35.4 370 59-461 105-484 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.4E-19 3E-24 177.0 38.0 438 60-649 38-484 (966)
13 PRK09782 bacteriophage N4 rece 99.9 9.5E-17 2.1E-21 178.0 58.0 501 59-651 67-707 (987)
14 PRK11788 tetratricopeptide rep 99.9 2.1E-18 4.5E-23 179.0 35.5 200 224-460 38-241 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-16 2.4E-21 174.7 50.1 433 72-611 128-570 (615)
16 PRK09782 bacteriophage N4 rece 99.8 1.3E-15 2.8E-20 169.1 56.5 559 71-685 44-707 (987)
17 PRK11788 tetratricopeptide rep 99.8 4.3E-18 9.3E-23 176.6 35.1 311 290-657 36-354 (389)
18 KOG2002 TPR-containing nuclear 99.8 2.4E-15 5.2E-20 155.8 46.0 566 58-663 152-758 (1018)
19 TIGR00990 3a0801s09 mitochondr 99.8 7E-16 1.5E-20 168.5 44.1 419 119-650 133-571 (615)
20 PRK15174 Vi polysaccharide exp 99.8 1E-15 2.2E-20 166.4 44.8 287 165-461 52-346 (656)
21 PRK15174 Vi polysaccharide exp 99.8 2.8E-16 6.2E-21 170.7 40.1 330 71-427 42-381 (656)
22 KOG4422 Uncharacterized conser 99.8 6.2E-14 1.4E-18 132.0 41.5 439 123-612 125-590 (625)
23 KOG2002 TPR-containing nuclear 99.8 5E-13 1.1E-17 138.9 50.3 552 86-682 145-743 (1018)
24 PRK10049 pgaA outer membrane p 99.8 1.4E-14 3.1E-19 161.1 41.7 417 71-626 15-468 (765)
25 PRK10049 pgaA outer membrane p 99.8 2.3E-14 4.9E-19 159.5 42.6 380 63-464 42-458 (765)
26 PRK14574 hmsH outer membrane p 99.7 2.3E-13 4.9E-18 148.3 48.2 469 71-619 34-518 (822)
27 PRK14574 hmsH outer membrane p 99.7 5.6E-13 1.2E-17 145.3 50.2 425 166-649 45-512 (822)
28 KOG2003 TPR repeat-containing 99.7 8.2E-14 1.8E-18 132.0 36.7 464 146-635 192-711 (840)
29 KOG2076 RNA polymerase III tra 99.7 1.1E-11 2.4E-16 128.3 48.1 366 73-461 141-554 (895)
30 KOG4422 Uncharacterized conser 99.7 1.4E-12 3E-17 123.1 37.5 406 222-692 117-559 (625)
31 KOG2076 RNA polymerase III tra 99.6 1E-10 2.2E-15 121.3 44.6 299 159-461 143-477 (895)
32 KOG2003 TPR repeat-containing 99.6 1.7E-11 3.8E-16 116.5 33.4 93 84-188 250-342 (840)
33 KOG1915 Cell cycle control pro 99.5 7.2E-09 1.6E-13 99.8 47.3 419 165-650 83-536 (677)
34 KOG0495 HAT repeat protein [RN 99.5 3.2E-08 6.9E-13 99.2 50.9 396 175-638 366-773 (913)
35 KOG0495 HAT repeat protein [RN 99.5 1.8E-08 4E-13 100.9 49.0 486 59-636 338-869 (913)
36 TIGR00540 hemY_coli hemY prote 99.5 8.5E-11 1.8E-15 121.3 33.9 284 168-461 97-398 (409)
37 KOG2047 mRNA splicing factor [ 99.5 8.1E-08 1.7E-12 96.3 48.8 450 71-591 102-630 (835)
38 PRK10747 putative protoheme IX 99.4 1.6E-09 3.6E-14 111.2 38.2 285 295-647 90-387 (398)
39 PRK10747 putative protoheme IX 99.4 5.5E-10 1.2E-14 114.7 34.0 82 527-611 308-389 (398)
40 KOG1126 DNA-binding cell divis 99.4 5.8E-11 1.3E-15 119.3 25.7 215 235-461 333-551 (638)
41 COG2956 Predicted N-acetylgluc 99.4 6E-10 1.3E-14 102.0 29.4 284 168-465 48-350 (389)
42 KOG0547 Translocase of outer m 99.4 2.3E-09 4.9E-14 103.7 34.8 359 72-461 116-490 (606)
43 KOG1155 Anaphase-promoting com 99.4 7.3E-09 1.6E-13 99.7 38.0 282 167-462 176-461 (559)
44 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.2E-17 127.7 13.7 252 167-460 20-275 (280)
45 TIGR00540 hemY_coli hemY prote 99.4 6.3E-10 1.4E-14 114.9 33.8 82 528-610 314-397 (409)
46 PF13429 TPR_15: Tetratricopep 99.4 2.8E-12 6.1E-17 125.7 13.0 227 226-460 13-241 (280)
47 KOG1155 Anaphase-promoting com 99.4 6.4E-09 1.4E-13 100.0 34.3 329 78-456 171-530 (559)
48 KOG0547 Translocase of outer m 99.4 8.3E-09 1.8E-13 99.9 33.5 407 120-611 122-565 (606)
49 KOG1126 DNA-binding cell divis 99.4 2E-10 4.3E-15 115.5 23.5 282 126-428 332-621 (638)
50 KOG4318 Bicoid mRNA stability 99.3 8.7E-09 1.9E-13 106.8 34.7 528 64-639 20-586 (1088)
51 PF13041 PPR_2: PPR repeat fam 99.3 2.8E-12 6.2E-17 87.2 6.7 50 581-630 1-50 (50)
52 COG3071 HemY Uncharacterized e 99.3 4.5E-09 9.8E-14 99.6 28.7 197 218-426 184-389 (400)
53 COG2956 Predicted N-acetylgluc 99.3 7.2E-09 1.6E-13 95.1 28.7 289 85-427 49-347 (389)
54 KOG1915 Cell cycle control pro 99.3 1.3E-06 2.8E-11 84.7 48.5 473 123-668 83-604 (677)
55 PF13041 PPR_2: PPR repeat fam 99.3 7.5E-12 1.6E-16 85.1 6.4 50 546-595 1-50 (50)
56 COG3071 HemY Uncharacterized e 99.3 2.7E-07 5.9E-12 87.8 38.5 287 291-639 86-382 (400)
57 KOG4318 Bicoid mRNA stability 99.3 8.3E-10 1.8E-14 114.1 23.0 142 546-690 202-376 (1088)
58 KOG1173 Anaphase-promoting com 99.3 3.7E-07 8E-12 90.6 39.9 506 71-667 16-533 (611)
59 KOG1840 Kinesin light chain [C 99.2 9.4E-10 2E-14 112.0 21.2 267 67-367 196-495 (508)
60 PRK12370 invasion protein regu 99.2 1.9E-09 4.2E-14 115.7 21.9 171 59-248 284-468 (553)
61 KOG2376 Signal recognition par 99.2 4.8E-06 1E-10 83.3 43.1 447 163-682 20-518 (652)
62 KOG3785 Uncharacterized conser 99.2 1.7E-06 3.8E-11 80.6 37.4 447 79-623 30-499 (557)
63 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 103.8 26.0 258 218-575 196-477 (508)
64 PRK12370 invasion protein regu 99.2 9.1E-09 2E-13 110.6 26.4 115 168-285 274-401 (553)
65 KOG1156 N-terminal acetyltrans 99.2 6.5E-07 1.4E-11 90.3 36.8 439 124-626 18-480 (700)
66 KOG2047 mRNA splicing factor [ 99.2 1E-05 2.2E-10 81.8 52.9 513 123-709 112-709 (835)
67 TIGR02521 type_IV_pilW type IV 99.2 2.7E-08 5.8E-13 95.1 26.6 199 222-460 32-230 (234)
68 TIGR02521 type_IV_pilW type IV 99.2 6.7E-09 1.5E-13 99.3 21.9 196 70-282 30-229 (234)
69 KOG1156 N-terminal acetyltrans 99.2 4.3E-06 9.3E-11 84.6 41.4 456 71-610 8-509 (700)
70 COG3063 PilF Tfp pilus assembl 99.1 3.6E-08 7.7E-13 86.5 21.7 198 70-284 34-235 (250)
71 KOG2376 Signal recognition par 99.1 4E-06 8.6E-11 83.9 37.9 460 77-609 18-517 (652)
72 KOG1174 Anaphase-promoting com 99.1 7.2E-06 1.6E-10 78.3 37.4 83 529-617 420-503 (564)
73 KOG1173 Anaphase-promoting com 99.1 3.1E-07 6.6E-12 91.1 29.3 283 154-445 243-534 (611)
74 KOG3785 Uncharacterized conser 99.1 5.6E-06 1.2E-10 77.3 34.9 442 123-653 32-493 (557)
75 PF12569 NARP1: NMDA receptor- 99.1 1.4E-06 3E-11 90.5 34.4 83 527-610 242-332 (517)
76 KOG1127 TPR repeat-containing 99.0 4.6E-06 9.9E-11 88.3 36.9 367 58-460 480-877 (1238)
77 KOG1129 TPR repeat-containing 99.0 8.7E-08 1.9E-12 88.1 21.3 222 117-351 227-456 (478)
78 PF12569 NARP1: NMDA receptor- 99.0 3.4E-06 7.3E-11 87.6 35.2 285 122-427 13-334 (517)
79 KOG3616 Selective LIM binding 99.0 1.1E-05 2.5E-10 82.3 36.4 387 198-719 596-988 (1636)
80 KOG1174 Anaphase-promoting com 99.0 1.4E-06 2.9E-11 83.1 27.8 287 80-393 205-501 (564)
81 cd05804 StaR_like StaR_like; a 99.0 1.9E-06 4.1E-11 88.2 31.0 206 66-285 2-215 (355)
82 KOG1129 TPR repeat-containing 98.9 1.7E-07 3.7E-12 86.2 19.2 127 329-463 228-354 (478)
83 COG3063 PilF Tfp pilus assembl 98.9 7.2E-07 1.6E-11 78.5 21.7 194 155-352 35-235 (250)
84 KOG0624 dsRNA-activated protei 98.9 5.3E-06 1.1E-10 77.2 28.2 329 71-463 38-371 (504)
85 PRK11189 lipoprotein NlpI; Pro 98.9 3.8E-07 8.2E-12 89.6 22.7 193 194-394 67-267 (296)
86 PRK11189 lipoprotein NlpI; Pro 98.9 8.1E-07 1.8E-11 87.2 25.0 202 222-437 65-274 (296)
87 KOG0624 dsRNA-activated protei 98.9 6.3E-07 1.4E-11 83.2 21.7 299 53-392 55-370 (504)
88 KOG3617 WD40 and TPR repeat-co 98.9 5.3E-05 1.1E-09 78.8 36.3 495 81-657 810-1366(1416)
89 KOG4162 Predicted calmodulin-b 98.8 0.00025 5.3E-09 73.8 45.7 404 218-643 320-779 (799)
90 KOG4162 Predicted calmodulin-b 98.8 9.6E-05 2.1E-09 76.8 35.7 371 71-461 323-782 (799)
91 KOG2053 Mitochondrial inherita 98.8 0.00045 9.9E-09 73.2 43.6 220 81-319 19-256 (932)
92 KOG3617 WD40 and TPR repeat-co 98.8 0.00026 5.6E-09 73.9 38.3 325 80-460 737-1107(1416)
93 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.4E-13 62.1 4.1 32 578-609 2-33 (34)
94 cd05804 StaR_like StaR_like; a 98.7 8.6E-05 1.9E-09 76.0 34.6 198 221-426 6-214 (355)
95 KOG4340 Uncharacterized conser 98.7 3.4E-05 7.3E-10 70.6 26.7 186 123-321 20-210 (459)
96 KOG4340 Uncharacterized conser 98.7 6.4E-05 1.4E-09 68.8 27.2 322 226-609 15-372 (459)
97 PF12854 PPR_1: PPR repeat 98.6 3.4E-08 7.3E-13 59.9 3.8 34 542-575 1-34 (34)
98 PRK04841 transcriptional regul 98.6 0.00027 5.8E-09 82.4 38.9 374 197-613 347-761 (903)
99 KOG1125 TPR repeat-containing 98.6 2.8E-06 6E-11 85.0 18.6 251 51-380 300-559 (579)
100 KOG1125 TPR repeat-containing 98.6 2E-06 4.3E-11 85.9 17.5 249 197-456 291-565 (579)
101 PRK04841 transcriptional regul 98.6 0.00021 4.6E-09 83.2 37.1 233 228-460 459-718 (903)
102 KOG0548 Molecular co-chaperone 98.5 0.0015 3.2E-08 65.5 34.0 116 330-460 304-419 (539)
103 KOG0985 Vesicle coat protein c 98.5 0.0028 6E-08 68.1 42.1 195 117-343 988-1185(1666)
104 KOG1127 TPR repeat-containing 98.5 0.0005 1.1E-08 73.6 32.3 358 59-458 515-909 (1238)
105 PF04733 Coatomer_E: Coatomer 98.5 1.3E-05 2.8E-10 77.5 19.6 217 227-461 41-264 (290)
106 TIGR03302 OM_YfiO outer membra 98.5 1.3E-05 2.9E-10 76.3 19.4 193 71-285 33-232 (235)
107 KOG1914 mRNA cleavage and poly 98.5 0.0019 4.1E-08 64.7 42.2 208 379-633 309-525 (656)
108 PF04733 Coatomer_E: Coatomer 98.5 4.8E-06 1E-10 80.4 15.1 244 301-611 13-264 (290)
109 PLN02789 farnesyltranstransfer 98.4 8.2E-05 1.8E-09 73.0 23.2 48 238-286 125-172 (320)
110 KOG3616 Selective LIM binding 98.4 0.0038 8.2E-08 64.7 35.5 266 71-386 661-931 (1636)
111 PRK10370 formate-dependent nit 98.4 3.2E-05 6.9E-10 70.5 17.3 147 118-286 21-174 (198)
112 KOG1070 rRNA processing protei 98.3 0.00011 2.4E-09 81.1 23.2 222 52-289 1440-1667(1710)
113 KOG0548 Molecular co-chaperone 98.3 0.0045 9.7E-08 62.2 34.6 423 167-630 14-471 (539)
114 KOG0985 Vesicle coat protein c 98.3 0.0078 1.7E-07 64.9 37.8 373 152-636 984-1359(1666)
115 KOG1128 Uncharacterized conser 98.3 0.0005 1.1E-08 71.2 26.4 242 360-671 395-638 (777)
116 COG5010 TadD Flp pilus assembl 98.3 0.00013 2.7E-09 66.3 19.4 168 216-425 62-229 (257)
117 PRK14720 transcript cleavage f 98.3 0.00021 4.5E-09 78.3 24.9 237 65-374 26-268 (906)
118 KOG1128 Uncharacterized conser 98.3 0.00033 7.2E-09 72.5 24.5 214 194-426 401-615 (777)
119 PRK15179 Vi polysaccharide bio 98.3 5.9E-05 1.3E-09 81.7 20.2 115 168-285 99-217 (694)
120 KOG1070 rRNA processing protei 98.3 0.00053 1.1E-08 76.0 25.9 226 323-636 1457-1689(1710)
121 PLN02789 farnesyltranstransfer 98.2 0.002 4.2E-08 63.4 27.7 123 332-462 45-171 (320)
122 PRK14720 transcript cleavage f 98.2 0.00099 2.1E-08 73.2 27.8 167 255-461 30-197 (906)
123 PF08579 RPM2: Mitochondrial r 98.2 3.4E-05 7.5E-10 59.9 12.0 86 586-671 28-119 (120)
124 TIGR03302 OM_YfiO outer membra 98.2 0.00021 4.5E-09 68.1 19.4 65 221-285 33-99 (235)
125 PRK15359 type III secretion sy 98.2 2.1E-05 4.6E-10 67.7 11.2 119 60-200 17-135 (144)
126 PRK15179 Vi polysaccharide bio 98.2 0.00089 1.9E-08 72.8 25.4 134 321-462 83-217 (694)
127 PRK10370 formate-dependent nit 98.2 0.00051 1.1E-08 62.6 20.2 125 304-436 54-181 (198)
128 KOG3081 Vesicle coat complex C 98.2 0.00064 1.4E-08 61.7 20.0 243 168-426 21-270 (299)
129 COG5010 TadD Flp pilus assembl 98.1 0.00035 7.7E-09 63.4 18.4 155 120-285 73-231 (257)
130 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 51.8 4.5 33 585-617 2-34 (35)
131 KOG3060 Uncharacterized conser 98.1 0.00042 9E-09 62.4 18.1 183 85-285 26-220 (289)
132 KOG3081 Vesicle coat complex C 98.1 0.0027 5.9E-08 57.8 22.7 70 563-634 188-257 (299)
133 PF13812 PPR_3: Pentatricopept 98.1 7.5E-06 1.6E-10 50.2 4.5 32 585-616 3-34 (34)
134 PRK15359 type III secretion sy 98.0 0.00027 5.9E-09 60.8 14.9 109 309-427 13-121 (144)
135 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 49.3 4.1 33 549-581 2-34 (34)
136 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3E-10 49.4 4.4 35 549-583 1-35 (35)
137 COG4783 Putative Zn-dependent 98.0 0.00034 7.5E-09 69.2 15.7 133 167-318 318-454 (484)
138 KOG1914 mRNA cleavage and poly 97.9 0.03 6.5E-07 56.5 39.0 75 188-265 17-95 (656)
139 KOG2053 Mitochondrial inherita 97.9 0.05 1.1E-06 58.4 42.7 467 168-675 22-561 (932)
140 TIGR02552 LcrH_SycD type III s 97.9 0.00073 1.6E-08 57.8 15.3 118 311-437 5-122 (135)
141 KOG3060 Uncharacterized conser 97.9 0.016 3.4E-07 52.6 23.2 187 234-427 25-220 (289)
142 COG4783 Putative Zn-dependent 97.8 0.015 3.2E-07 58.1 24.7 111 303-421 320-431 (484)
143 PF14938 SNAP: Soluble NSF att 97.8 0.0043 9.4E-08 60.5 21.4 175 70-285 34-225 (282)
144 TIGR02552 LcrH_SycD type III s 97.8 0.00034 7.5E-09 59.8 11.7 97 188-285 14-114 (135)
145 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.6E-10 46.5 3.1 29 585-613 2-30 (31)
146 PRK15363 pathogenicity island 97.7 0.00024 5.2E-09 60.0 9.4 94 154-249 34-131 (157)
147 PF08579 RPM2: Mitochondrial r 97.7 0.00059 1.3E-08 53.2 10.2 78 553-630 30-116 (120)
148 PF10037 MRP-S27: Mitochondria 97.7 0.00055 1.2E-08 68.9 12.8 120 512-631 63-186 (429)
149 PF10037 MRP-S27: Mitochondria 97.7 0.00068 1.5E-08 68.2 13.1 126 319-446 61-186 (429)
150 PF09976 TPR_21: Tetratricopep 97.6 0.003 6.5E-08 54.6 15.1 130 325-459 13-144 (145)
151 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 44.6 3.4 31 549-579 1-31 (31)
152 PF14938 SNAP: Soluble NSF att 97.6 0.0059 1.3E-07 59.6 18.4 202 120-350 42-263 (282)
153 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0031 6.8E-08 63.3 16.2 125 326-460 171-295 (395)
154 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0031 6.7E-08 63.4 16.1 123 224-390 172-295 (395)
155 PF06239 ECSIT: Evolutionarily 97.5 0.0018 3.8E-08 57.5 11.4 87 547-633 46-153 (228)
156 PRK10866 outer membrane biogen 97.4 0.024 5.3E-07 53.5 18.8 188 71-283 32-239 (243)
157 PF09976 TPR_21: Tetratricopep 97.3 0.01 2.2E-07 51.2 14.5 52 369-422 91-142 (145)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.2 4.4E-06 49.5 34.6 86 49-144 21-107 (660)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.01 2.3E-07 49.1 14.1 101 326-428 4-106 (119)
160 PF06239 ECSIT: Evolutionarily 97.3 0.0039 8.3E-08 55.4 11.4 101 510-610 42-166 (228)
161 PRK15363 pathogenicity island 97.3 0.0024 5.1E-08 54.1 9.6 97 188-285 32-132 (157)
162 PF04840 Vps16_C: Vps16, C-ter 97.3 0.23 5E-06 48.9 30.6 111 324-458 177-287 (319)
163 PLN03088 SGT1, suppressor of 97.2 0.0026 5.7E-08 64.2 11.3 87 166-285 13-99 (356)
164 KOG0553 TPR repeat-containing 97.2 0.0018 3.9E-08 60.3 8.9 92 165-260 91-186 (304)
165 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0043 9.3E-08 51.5 10.8 104 72-185 3-106 (119)
166 KOG1585 Protein required for f 97.2 0.015 3.3E-07 52.3 14.1 213 65-312 23-250 (308)
167 cd00189 TPR Tetratricopeptide 97.2 0.0077 1.7E-07 47.2 11.5 90 329-424 5-94 (100)
168 cd00189 TPR Tetratricopeptide 97.2 0.0074 1.6E-07 47.3 11.3 94 366-461 3-96 (100)
169 PF05843 Suf: Suppressor of fo 97.1 0.01 2.2E-07 57.7 13.7 130 257-392 2-136 (280)
170 COG4235 Cytochrome c biogenesi 97.1 0.01 2.3E-07 55.7 12.7 114 58-185 144-257 (287)
171 PF05843 Suf: Suppressor of fo 97.1 0.011 2.4E-07 57.4 13.6 144 434-628 2-150 (280)
172 KOG1130 Predicted G-alpha GTPa 97.1 0.024 5.2E-07 55.0 15.2 138 325-462 196-344 (639)
173 PRK15331 chaperone protein Sic 97.1 0.013 2.7E-07 50.1 11.8 94 154-249 36-133 (165)
174 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.7E-07 47.2 12.1 60 120-184 8-67 (120)
175 PF12895 Apc3: Anaphase-promot 97.0 0.0019 4.2E-08 49.5 6.3 82 337-423 2-83 (84)
176 PF12895 Apc3: Anaphase-promot 97.0 0.0014 3E-08 50.3 5.4 81 376-458 2-83 (84)
177 PF07079 DUF1347: Protein of u 97.0 0.42 9E-06 47.6 41.8 455 80-625 15-532 (549)
178 PF13432 TPR_16: Tetratricopep 97.0 0.002 4.2E-08 46.6 5.6 61 77-147 3-63 (65)
179 PRK10866 outer membrane biogen 97.0 0.31 6.8E-06 46.1 21.6 62 224-286 35-99 (243)
180 KOG0550 Molecular chaperone (D 97.0 0.11 2.3E-06 50.9 18.2 255 168-428 62-351 (486)
181 PLN03088 SGT1, suppressor of 96.9 0.029 6.3E-07 56.7 15.4 91 331-427 9-99 (356)
182 PF08631 SPO22: Meiosis protei 96.9 0.39 8.4E-06 46.7 22.5 59 82-142 4-65 (278)
183 KOG2041 WD40 repeat protein [G 96.9 0.73 1.6E-05 48.4 26.1 74 199-281 830-903 (1189)
184 PF13525 YfiO: Outer membrane 96.9 0.057 1.2E-06 49.6 15.7 181 70-275 4-197 (203)
185 PRK02603 photosystem I assembl 96.9 0.058 1.3E-06 48.2 15.3 86 324-413 35-121 (172)
186 COG3898 Uncharacterized membra 96.8 0.59 1.3E-05 45.6 29.1 245 168-427 133-392 (531)
187 PF13414 TPR_11: TPR repeat; P 96.8 0.005 1.1E-07 45.0 6.4 63 71-141 3-66 (69)
188 PRK02603 photosystem I assembl 96.8 0.15 3.2E-06 45.6 17.1 91 362-453 34-126 (172)
189 CHL00033 ycf3 photosystem I as 96.8 0.036 7.8E-07 49.3 13.0 98 324-424 35-139 (168)
190 CHL00033 ycf3 photosystem I as 96.7 0.039 8.4E-07 49.1 13.0 64 222-285 36-101 (168)
191 PRK10153 DNA-binding transcrip 96.7 0.14 3.1E-06 54.2 19.0 73 546-622 418-490 (517)
192 PF04840 Vps16_C: Vps16, C-ter 96.7 0.72 1.5E-05 45.5 27.1 58 164-231 9-66 (319)
193 PF13424 TPR_12: Tetratricopep 96.7 0.0043 9.3E-08 46.8 5.7 68 71-141 5-74 (78)
194 COG4235 Cytochrome c biogenesi 96.7 0.047 1E-06 51.5 13.1 113 171-286 138-257 (287)
195 PF14559 TPR_19: Tetratricopep 96.6 0.0077 1.7E-07 43.9 6.5 51 336-391 3-53 (68)
196 PRK10153 DNA-binding transcrip 96.6 0.13 2.7E-06 54.6 17.9 68 321-394 417-484 (517)
197 KOG0553 TPR repeat-containing 96.6 0.031 6.8E-07 52.3 11.4 99 334-440 91-189 (304)
198 PF12688 TPR_5: Tetratrico pep 96.6 0.11 2.4E-06 42.5 13.4 63 223-285 3-67 (120)
199 PF13432 TPR_16: Tetratricopep 96.6 0.012 2.6E-07 42.4 7.2 58 227-285 3-60 (65)
200 KOG2796 Uncharacterized conser 96.6 0.43 9.4E-06 43.8 18.0 64 222-285 178-241 (366)
201 KOG1130 Predicted G-alpha GTPa 96.6 0.088 1.9E-06 51.3 14.5 305 76-426 22-343 (639)
202 PF14559 TPR_19: Tetratricopep 96.6 0.012 2.5E-07 42.9 7.1 63 232-297 2-64 (68)
203 COG3898 Uncharacterized membra 96.5 0.91 2E-05 44.4 30.6 296 72-396 83-396 (531)
204 KOG1538 Uncharacterized conser 96.5 0.91 2E-05 47.3 21.9 42 237-281 616-657 (1081)
205 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.027 5.8E-07 56.5 11.0 72 65-142 70-141 (453)
206 COG4700 Uncharacterized protei 96.4 0.4 8.6E-06 41.6 15.9 105 194-298 92-202 (251)
207 PF03704 BTAD: Bacterial trans 96.4 0.11 2.4E-06 44.9 13.1 71 365-436 64-139 (146)
208 PF12921 ATP13: Mitochondrial 96.3 0.069 1.5E-06 44.2 10.9 87 547-633 1-103 (126)
209 PF13414 TPR_11: TPR repeat; P 96.3 0.02 4.4E-07 41.8 7.1 59 365-424 5-64 (69)
210 PF03704 BTAD: Bacterial trans 96.3 0.073 1.6E-06 46.0 11.7 122 156-292 7-137 (146)
211 PRK10803 tol-pal system protei 96.2 0.053 1.1E-06 51.7 11.0 105 71-185 143-247 (263)
212 KOG0550 Molecular chaperone (D 96.1 1.2 2.7E-05 43.9 19.5 53 558-610 259-314 (486)
213 KOG2280 Vacuolar assembly/sort 96.1 2.6 5.6E-05 45.1 26.0 126 310-458 669-795 (829)
214 PF13371 TPR_9: Tetratricopept 96.0 0.015 3.3E-07 43.0 5.3 60 78-147 2-61 (73)
215 KOG2796 Uncharacterized conser 96.0 1.3 2.8E-05 40.9 23.0 97 365-461 179-280 (366)
216 PF12921 ATP13: Mitochondrial 95.8 0.17 3.7E-06 41.8 11.0 83 582-667 1-99 (126)
217 PF13525 YfiO: Outer membrane 95.8 1.2 2.7E-05 40.9 17.8 64 222-285 6-71 (203)
218 PF07079 DUF1347: Protein of u 95.8 2.5 5.4E-05 42.5 35.7 144 231-375 16-179 (549)
219 PF13424 TPR_12: Tetratricopep 95.8 0.023 5.1E-07 42.7 5.3 68 113-183 5-74 (78)
220 PRK10803 tol-pal system protei 95.7 0.22 4.8E-06 47.6 12.7 97 325-427 144-246 (263)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.21 4.6E-06 50.3 12.8 66 218-285 72-141 (453)
222 PF13170 DUF4003: Protein of u 95.6 1.3 2.9E-05 43.1 17.8 146 515-662 60-223 (297)
223 PF13371 TPR_9: Tetratricopept 95.6 0.098 2.1E-06 38.6 8.1 55 372-427 4-58 (73)
224 PF08631 SPO22: Meiosis protei 95.6 2.5 5.4E-05 41.1 23.5 177 123-324 3-192 (278)
225 KOG1585 Protein required for f 95.5 0.82 1.8E-05 41.7 14.6 203 113-345 31-248 (308)
226 PF13281 DUF4071: Domain of un 95.5 3 6.5E-05 41.7 20.8 77 222-298 142-224 (374)
227 KOG3941 Intermediate in Toll s 95.5 0.24 5.2E-06 45.9 11.2 104 512-634 64-174 (406)
228 COG4700 Uncharacterized protei 95.5 1.6 3.4E-05 38.1 18.5 100 253-352 86-188 (251)
229 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.3 7.2E-05 41.5 19.6 144 291-444 397-546 (660)
230 KOG1538 Uncharacterized conser 95.4 3.3 7.2E-05 43.4 19.9 45 169-217 614-658 (1081)
231 PRK15331 chaperone protein Sic 95.1 0.1 2.2E-06 44.7 7.5 96 188-284 34-133 (165)
232 PF04053 Coatomer_WDAD: Coatom 95.1 0.51 1.1E-05 48.9 14.0 161 77-282 267-428 (443)
233 PF10300 DUF3808: Protein of u 95.0 0.94 2E-05 47.7 16.0 124 118-249 193-333 (468)
234 KOG3941 Intermediate in Toll s 95.0 0.24 5.2E-06 45.9 9.7 78 504-598 96-173 (406)
235 KOG0543 FKBP-type peptidyl-pro 94.8 0.17 3.6E-06 49.8 8.8 133 122-285 217-355 (397)
236 COG4785 NlpI Lipoprotein NlpI, 94.6 1.5 3.2E-05 39.3 13.3 30 256-285 237-266 (297)
237 KOG1586 Protein required for f 94.5 3.6 7.8E-05 37.5 18.8 13 411-423 27-39 (288)
238 PF13170 DUF4003: Protein of u 94.5 1.6 3.4E-05 42.6 14.9 49 414-462 78-132 (297)
239 KOG1258 mRNA processing protei 94.5 7.4 0.00016 40.8 34.7 393 172-636 62-493 (577)
240 COG4649 Uncharacterized protei 94.5 2 4.4E-05 37.0 13.2 121 165-285 68-196 (221)
241 COG1729 Uncharacterized protei 94.4 0.28 6.1E-06 45.8 9.1 102 73-185 144-245 (262)
242 COG1729 Uncharacterized protei 94.2 0.42 9E-06 44.7 9.8 92 165-285 151-244 (262)
243 KOG4555 TPR repeat-containing 94.1 1.3 2.8E-05 36.0 10.7 69 218-286 74-145 (175)
244 KOG2610 Uncharacterized conser 93.9 1.3 2.9E-05 42.3 12.3 113 123-245 113-233 (491)
245 KOG2280 Vacuolar assembly/sort 93.9 11 0.00024 40.6 26.8 113 545-679 681-794 (829)
246 KOG2041 WD40 repeat protein [G 93.9 11 0.00023 40.3 26.8 54 397-459 851-904 (1189)
247 PF07035 Mic1: Colon cancer-as 93.9 4.1 8.9E-05 35.5 14.9 130 242-391 15-148 (167)
248 PF13431 TPR_17: Tetratricopep 93.7 0.05 1.1E-06 32.8 1.8 33 59-92 2-34 (34)
249 PRK11906 transcriptional regul 93.5 7.5 0.00016 39.7 17.6 111 235-349 318-432 (458)
250 COG4105 ComL DNA uptake lipopr 93.4 6.7 0.00015 36.6 17.1 189 71-285 34-233 (254)
251 PF13428 TPR_14: Tetratricopep 93.4 0.18 3.9E-06 32.6 4.3 35 72-108 2-36 (44)
252 KOG1941 Acetylcholine receptor 93.4 2.6 5.7E-05 40.9 13.3 207 71-283 43-273 (518)
253 PF10300 DUF3808: Protein of u 93.3 2.1 4.6E-05 45.1 14.3 167 74-249 191-375 (468)
254 KOG0543 FKBP-type peptidyl-pro 93.0 3 6.6E-05 41.4 13.6 127 333-462 217-355 (397)
255 PF04053 Coatomer_WDAD: Coatom 92.9 4.8 0.0001 41.8 16.0 157 229-458 269-427 (443)
256 KOG4555 TPR repeat-containing 92.9 4.3 9.4E-05 33.1 11.9 90 333-428 52-145 (175)
257 PF13512 TPR_18: Tetratricopep 92.9 2.1 4.5E-05 36.0 10.7 76 67-149 6-81 (142)
258 smart00299 CLH Clathrin heavy 92.8 5.4 0.00012 33.9 15.3 95 514-629 40-136 (140)
259 COG4649 Uncharacterized protei 92.8 6 0.00013 34.2 15.0 122 231-352 68-195 (221)
260 PF13512 TPR_18: Tetratricopep 92.7 1.7 3.6E-05 36.5 9.9 73 166-267 21-93 (142)
261 COG3629 DnrI DNA-binding trans 92.3 1.7 3.8E-05 41.3 10.8 78 549-627 154-236 (280)
262 PF09613 HrpB1_HrpK: Bacterial 92.2 5.8 0.00012 34.1 12.7 21 229-249 52-72 (160)
263 COG3118 Thioredoxin domain-con 92.1 6.1 0.00013 37.6 13.8 40 208-247 223-262 (304)
264 smart00299 CLH Clathrin heavy 92.1 6.8 0.00015 33.3 15.2 20 330-349 75-94 (140)
265 KOG2114 Vacuolar assembly/sort 92.0 22 0.00048 39.1 24.9 56 402-461 709-764 (933)
266 KOG2114 Vacuolar assembly/sort 91.7 24 0.00051 38.8 29.3 180 73-283 336-517 (933)
267 PRK11906 transcriptional regul 91.6 5.7 0.00012 40.6 14.0 95 218-314 335-432 (458)
268 PF10602 RPN7: 26S proteasome 91.0 2.4 5.2E-05 37.8 9.8 63 549-611 37-101 (177)
269 COG2909 MalT ATP-dependent tra 90.7 32 0.00068 38.3 24.7 265 191-463 347-648 (894)
270 PF10602 RPN7: 26S proteasome 90.6 2 4.3E-05 38.3 9.0 68 70-142 35-102 (177)
271 COG4105 ComL DNA uptake lipopr 90.6 15 0.00032 34.4 22.0 181 223-427 36-233 (254)
272 PF09205 DUF1955: Domain of un 90.5 8.7 0.00019 31.6 12.5 68 582-653 85-152 (161)
273 KOG2610 Uncharacterized conser 90.5 13 0.00029 35.8 14.3 47 374-421 186-232 (491)
274 PF13176 TPR_7: Tetratricopept 90.5 0.3 6.6E-06 29.9 2.6 28 73-100 1-28 (36)
275 COG3118 Thioredoxin domain-con 90.4 17 0.00037 34.8 15.0 47 202-248 145-195 (304)
276 PF13428 TPR_14: Tetratricopep 90.4 1.2 2.5E-05 28.8 5.5 24 368-391 6-29 (44)
277 COG3629 DnrI DNA-binding trans 90.3 3.4 7.4E-05 39.4 10.6 78 364-442 154-236 (280)
278 PF13281 DUF4071: Domain of un 90.0 23 0.00049 35.7 21.2 79 365-443 143-227 (374)
279 PF09613 HrpB1_HrpK: Bacterial 89.8 12 0.00025 32.4 12.3 90 332-431 18-110 (160)
280 PF09205 DUF1955: Domain of un 89.7 5.1 0.00011 32.9 9.4 69 219-288 84-152 (161)
281 TIGR02561 HrpB1_HrpK type III 89.5 7.7 0.00017 32.8 10.7 62 154-217 9-70 (153)
282 COG4785 NlpI Lipoprotein NlpI, 89.1 17 0.00037 32.9 16.4 160 256-427 99-266 (297)
283 COG0457 NrfG FOG: TPR repeat [ 88.9 19 0.00042 33.3 24.2 200 222-427 60-265 (291)
284 PF13176 TPR_7: Tetratricopept 88.6 1 2.2E-05 27.5 4.0 26 585-610 1-26 (36)
285 PF13762 MNE1: Mitochondrial s 88.5 8.4 0.00018 32.6 10.5 85 586-672 42-131 (145)
286 KOG1586 Protein required for f 88.2 21 0.00045 32.8 20.4 64 227-290 119-188 (288)
287 PF07035 Mic1: Colon cancer-as 88.1 17 0.00037 31.7 15.1 40 418-457 14-53 (167)
288 PF04184 ST7: ST7 protein; In 87.9 18 0.0004 37.3 14.1 59 226-284 264-323 (539)
289 KOG1550 Extracellular protein 87.8 45 0.00098 36.3 20.5 174 171-352 228-425 (552)
290 PF13431 TPR_17: Tetratricopep 87.6 0.41 9E-06 28.8 1.7 24 218-241 10-33 (34)
291 KOG1941 Acetylcholine receptor 87.3 31 0.00068 33.9 15.5 127 226-352 127-274 (518)
292 PF00515 TPR_1: Tetratricopept 87.3 1.5 3.2E-05 26.2 4.2 32 72-105 2-33 (34)
293 PF00515 TPR_1: Tetratricopept 87.0 1.8 3.9E-05 25.8 4.4 27 585-611 3-29 (34)
294 PF07719 TPR_2: Tetratricopept 86.9 1.6 3.4E-05 25.9 4.2 29 72-100 2-30 (34)
295 KOG4570 Uncharacterized conser 86.3 3.9 8.4E-05 39.0 8.0 108 318-428 58-165 (418)
296 KOG0276 Vesicle coat complex C 85.4 7.3 0.00016 40.8 10.0 124 123-282 624-747 (794)
297 COG1747 Uncharacterized N-term 85.4 50 0.0011 34.3 22.9 187 180-374 55-250 (711)
298 PF10345 Cohesin_load: Cohesin 84.8 69 0.0015 35.4 41.6 50 409-458 372-429 (608)
299 KOG4234 TPR repeat-containing 84.7 13 0.00028 33.1 9.8 95 79-184 103-197 (271)
300 TIGR02561 HrpB1_HrpK type III 84.5 24 0.00052 30.0 12.1 51 335-393 21-74 (153)
301 PF10345 Cohesin_load: Cohesin 84.3 72 0.0016 35.3 41.3 181 70-283 58-252 (608)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 83.6 10 0.00022 29.2 7.7 61 305-370 23-83 (103)
303 PF07719 TPR_2: Tetratricopept 83.6 3.2 7E-05 24.5 4.4 27 585-611 3-29 (34)
304 PF13374 TPR_10: Tetratricopep 82.5 2.7 5.9E-05 26.3 4.0 31 71-101 2-32 (42)
305 PF02284 COX5A: Cytochrome c o 82.0 7.3 0.00016 30.3 6.5 44 567-610 29-72 (108)
306 PF13374 TPR_10: Tetratricopep 81.8 3.8 8.3E-05 25.6 4.5 28 583-610 2-29 (42)
307 KOG4570 Uncharacterized conser 81.7 15 0.00033 35.2 9.7 101 251-352 59-163 (418)
308 KOG1464 COP9 signalosome, subu 81.6 47 0.001 31.2 15.1 55 83-141 39-93 (440)
309 PF02284 COX5A: Cytochrome c o 81.5 16 0.00035 28.5 8.1 47 306-352 27-73 (108)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 81.5 23 0.00049 27.4 9.3 64 563-627 22-85 (103)
311 KOG0276 Vesicle coat complex C 81.5 43 0.00092 35.5 13.5 149 233-423 598-746 (794)
312 KOG4234 TPR repeat-containing 81.5 18 0.0004 32.2 9.5 95 332-427 103-197 (271)
313 PF11207 DUF2989: Protein of u 80.2 45 0.00098 30.1 12.9 79 557-637 116-197 (203)
314 COG2976 Uncharacterized protei 79.8 12 0.00027 33.2 8.0 96 76-185 94-189 (207)
315 PF06552 TOM20_plant: Plant sp 79.4 29 0.00063 30.6 10.0 77 564-653 51-139 (186)
316 KOG0991 Replication factor C, 78.3 43 0.00094 30.8 11.0 79 535-616 181-271 (333)
317 PF13929 mRNA_stabil: mRNA sta 78.0 67 0.0015 30.9 16.4 119 320-441 160-286 (292)
318 KOG0687 26S proteasome regulat 77.6 59 0.0013 31.6 12.2 95 222-316 105-208 (393)
319 COG2976 Uncharacterized protei 77.5 23 0.00049 31.6 8.9 58 227-286 132-189 (207)
320 KOG1258 mRNA processing protei 77.4 1E+02 0.0023 32.7 32.4 122 323-453 296-420 (577)
321 PF11207 DUF2989: Protein of u 76.4 22 0.00047 32.1 8.7 42 376-417 153-197 (203)
322 PF13174 TPR_6: Tetratricopept 76.4 4.3 9.3E-05 23.7 3.2 29 73-101 2-30 (33)
323 KOG1920 IkappaB kinase complex 75.9 1.6E+02 0.0036 34.3 24.6 114 321-458 932-1051(1265)
324 PF07721 TPR_4: Tetratricopept 75.4 3.9 8.5E-05 22.6 2.6 23 73-95 3-25 (26)
325 PF04910 Tcf25: Transcriptiona 75.4 98 0.0021 31.4 15.6 124 153-284 38-167 (360)
326 PRK09687 putative lyase; Provi 75.3 84 0.0018 30.6 26.4 125 321-459 34-167 (280)
327 PF02259 FAT: FAT domain; Int 74.8 99 0.0021 31.2 18.2 66 396-461 144-212 (352)
328 KOG0545 Aryl-hydrocarbon recep 74.7 63 0.0014 30.0 11.1 56 157-214 232-287 (329)
329 PF13929 mRNA_stabil: mRNA sta 74.5 84 0.0018 30.2 17.0 83 544-626 198-286 (292)
330 KOG1550 Extracellular protein 74.2 1.4E+02 0.003 32.6 19.8 16 528-543 379-394 (552)
331 PF13181 TPR_8: Tetratricopept 73.4 6.6 0.00014 23.2 3.6 29 72-100 2-30 (34)
332 PF13762 MNE1: Mitochondrial s 73.0 58 0.0013 27.7 11.6 100 535-634 24-131 (145)
333 PF04184 ST7: ST7 protein; In 72.9 1.3E+02 0.0027 31.5 21.1 169 225-409 172-342 (539)
334 COG0457 NrfG FOG: TPR repeat [ 72.5 78 0.0017 29.0 26.0 223 234-462 36-265 (291)
335 COG3947 Response regulator con 72.4 94 0.002 29.9 16.9 152 306-461 150-341 (361)
336 COG5187 RPN7 26S proteasome re 72.2 93 0.002 29.7 12.7 99 582-682 114-219 (412)
337 KOG0687 26S proteasome regulat 72.1 1E+02 0.0022 30.1 13.9 95 585-681 106-207 (393)
338 COG1747 Uncharacterized N-term 71.9 1.3E+02 0.0029 31.4 20.6 165 288-463 63-235 (711)
339 TIGR02508 type_III_yscG type I 71.7 46 0.001 26.0 8.6 83 237-327 21-105 (115)
340 PF02259 FAT: FAT domain; Int 71.5 1.2E+02 0.0026 30.6 24.1 66 546-611 144-212 (352)
341 TIGR03504 FimV_Cterm FimV C-te 71.1 11 0.00024 24.3 4.2 25 226-250 4-28 (44)
342 PF08424 NRDE-2: NRDE-2, neces 71.1 41 0.00089 33.5 10.5 122 59-187 54-186 (321)
343 KOG1920 IkappaB kinase complex 71.0 2.2E+02 0.0047 33.4 25.6 88 512-611 932-1027(1265)
344 PF00637 Clathrin: Region in C 70.4 2.3 4.9E-05 36.4 1.3 86 369-461 13-98 (143)
345 COG4455 ImpE Protein of avirul 69.8 15 0.00032 33.3 6.1 75 75-159 5-79 (273)
346 KOG2297 Predicted translation 69.4 1.1E+02 0.0024 29.5 19.1 17 619-635 322-338 (412)
347 COG5159 RPN6 26S proteasome re 68.9 1.1E+02 0.0024 29.2 19.2 142 121-283 11-152 (421)
348 PF13181 TPR_8: Tetratricopept 68.7 14 0.0003 21.7 4.3 27 258-284 3-29 (34)
349 PF13174 TPR_6: Tetratricopept 68.6 7.3 0.00016 22.7 3.0 26 224-249 3-28 (33)
350 PRK15180 Vi polysaccharide bio 68.3 40 0.00087 34.5 9.3 121 268-394 301-422 (831)
351 PF11848 DUF3368: Domain of un 66.4 24 0.00052 23.3 5.2 32 630-664 14-45 (48)
352 KOG0686 COP9 signalosome, subu 66.3 1.5E+02 0.0033 29.9 15.6 65 326-392 152-216 (466)
353 COG2909 MalT ATP-dependent tra 64.7 2.5E+02 0.0054 31.8 30.4 233 334-608 425-684 (894)
354 KOG2066 Vacuolar assembly/sort 64.7 2.3E+02 0.005 31.4 28.8 29 595-629 673-701 (846)
355 PF11848 DUF3368: Domain of un 64.7 28 0.00061 22.9 5.3 33 594-626 13-45 (48)
356 TIGR03504 FimV_Cterm FimV C-te 64.5 19 0.00042 23.2 4.3 26 261-286 4-29 (44)
357 KOG3364 Membrane protein invol 64.0 86 0.0019 26.2 9.1 96 615-712 29-126 (149)
358 PF14689 SPOB_a: Sensor_kinase 63.7 26 0.00057 24.6 5.3 46 340-391 6-51 (62)
359 PF00637 Clathrin: Region in C 63.6 2.2 4.8E-05 36.5 -0.1 76 554-636 13-88 (143)
360 PF10579 Rapsyn_N: Rapsyn N-te 62.9 25 0.00054 26.0 5.1 46 560-605 18-65 (80)
361 COG4455 ImpE Protein of avirul 62.6 62 0.0014 29.5 8.4 58 327-389 4-61 (273)
362 PF14561 TPR_20: Tetratricopep 62.1 71 0.0015 24.6 7.9 59 214-272 15-74 (90)
363 PHA02875 ankyrin repeat protei 61.4 69 0.0015 33.4 10.5 76 374-457 10-89 (413)
364 KOG4077 Cytochrome c oxidase, 60.6 64 0.0014 26.5 7.3 46 566-611 67-112 (149)
365 KOG4648 Uncharacterized conser 60.5 52 0.0011 32.1 8.1 92 332-432 105-197 (536)
366 PF13934 ELYS: Nuclear pore co 60.5 1.1E+02 0.0023 28.7 10.4 96 164-269 87-185 (226)
367 PF04190 DUF410: Protein of un 60.4 1.6E+02 0.0035 28.2 14.2 26 190-215 89-114 (260)
368 TIGR02508 type_III_yscG type I 60.2 82 0.0018 24.7 9.0 86 529-622 21-106 (115)
369 KOG4648 Uncharacterized conser 59.7 31 0.00067 33.6 6.5 88 372-461 106-193 (536)
370 KOG4642 Chaperone-dependent E3 59.6 90 0.002 29.0 9.0 42 168-211 23-64 (284)
371 KOG4521 Nuclear pore complex, 59.0 2E+02 0.0043 33.6 13.2 35 323-357 1101-1136(1480)
372 smart00028 TPR Tetratricopepti 58.9 15 0.00032 20.5 3.1 29 72-100 2-30 (34)
373 PF07163 Pex26: Pex26 protein; 58.5 97 0.0021 29.6 9.3 58 228-285 90-147 (309)
374 PF14853 Fis1_TPR_C: Fis1 C-te 57.2 58 0.0013 22.1 6.4 33 590-624 8-40 (53)
375 PF07163 Pex26: Pex26 protein; 57.1 1.5E+02 0.0033 28.4 10.3 50 407-456 127-181 (309)
376 PF06552 TOM20_plant: Plant sp 56.6 1.4E+02 0.0031 26.4 10.0 63 379-445 51-125 (186)
377 PF10579 Rapsyn_N: Rapsyn N-te 56.0 41 0.0009 24.9 5.2 51 228-279 14-66 (80)
378 PF09477 Type_III_YscG: Bacter 55.7 1E+02 0.0023 24.5 9.3 80 235-319 20-99 (116)
379 PRK10564 maltose regulon perip 54.9 24 0.00053 33.9 5.1 46 580-625 253-299 (303)
380 PF07575 Nucleopor_Nup85: Nup8 54.4 3.3E+02 0.0071 29.9 17.0 47 659-706 499-545 (566)
381 COG5108 RPO41 Mitochondrial DN 52.7 85 0.0019 33.7 8.8 78 553-630 33-115 (1117)
382 PRK07764 DNA polymerase III su 52.6 3.8E+02 0.0083 30.9 14.7 27 588-615 253-279 (824)
383 KOG4077 Cytochrome c oxidase, 51.7 1.1E+02 0.0024 25.2 7.4 46 307-352 67-112 (149)
384 PF11846 DUF3366: Domain of un 51.5 79 0.0017 28.6 7.9 33 579-611 140-172 (193)
385 KOG0376 Serine-threonine phosp 51.5 48 0.001 34.1 6.8 96 168-267 17-116 (476)
386 PF13934 ELYS: Nuclear pore co 51.0 2.1E+02 0.0046 26.7 11.2 111 541-668 72-184 (226)
387 PF04097 Nic96: Nup93/Nic96; 49.9 4E+02 0.0087 29.5 22.5 90 329-427 263-356 (613)
388 PHA02875 ankyrin repeat protei 48.8 2.5E+02 0.0055 29.1 12.3 14 640-653 299-312 (413)
389 KOG0686 COP9 signalosome, subu 48.4 3.1E+02 0.0068 27.9 14.5 91 222-312 151-252 (466)
390 PF11838 ERAP1_C: ERAP1-like C 47.7 2.6E+02 0.0056 27.7 11.8 96 529-629 146-246 (324)
391 PF10366 Vps39_1: Vacuolar sor 47.6 1.2E+02 0.0026 24.3 7.4 27 585-611 41-67 (108)
392 PF07575 Nucleopor_Nup85: Nup8 47.6 1.6E+02 0.0035 32.3 10.8 76 309-390 390-465 (566)
393 PF09670 Cas_Cas02710: CRISPR- 47.2 1.5E+02 0.0032 30.5 9.7 61 118-184 136-198 (379)
394 PRK10304 ferritin; Provisional 46.8 1.8E+02 0.004 25.5 9.0 105 305-422 51-155 (165)
395 PF14689 SPOB_a: Sensor_kinase 46.3 49 0.0011 23.3 4.4 23 588-610 28-50 (62)
396 PF14853 Fis1_TPR_C: Fis1 C-te 46.0 93 0.002 21.1 6.2 33 74-108 4-36 (53)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 45.7 1.7E+02 0.0038 24.2 12.0 86 122-212 35-120 (126)
398 PF04097 Nic96: Nup93/Nic96; 45.2 4.7E+02 0.01 29.0 14.6 90 555-649 265-355 (613)
399 cd00280 TRFH Telomeric Repeat 45.2 1.5E+02 0.0033 26.3 7.8 67 564-633 85-158 (200)
400 KOG2422 Uncharacterized conser 45.1 4.2E+02 0.0092 28.4 17.3 142 124-284 249-406 (665)
401 COG3947 Response regulator con 45.0 3E+02 0.0065 26.7 16.0 72 585-660 281-357 (361)
402 PF00244 14-3-3: 14-3-3 protei 44.7 2.8E+02 0.006 26.2 11.9 59 226-284 6-65 (236)
403 KOG0292 Vesicle coat complex C 44.1 64 0.0014 35.9 6.6 156 119-318 626-782 (1202)
404 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.4E+02 0.0031 22.7 6.9 67 381-453 20-86 (88)
405 PF12862 Apc5: Anaphase-promot 43.7 70 0.0015 24.8 5.4 60 81-142 8-70 (94)
406 COG5187 RPN7 26S proteasome re 43.6 3.1E+02 0.0067 26.4 17.7 66 363-428 115-185 (412)
407 PF12968 DUF3856: Domain of Un 42.7 1.9E+02 0.0041 23.7 9.7 107 73-181 9-126 (144)
408 PF09670 Cas_Cas02710: CRISPR- 42.7 3.9E+02 0.0085 27.4 12.8 58 227-285 137-198 (379)
409 KOG2908 26S proteasome regulat 42.3 3.6E+02 0.0077 26.8 11.2 69 330-399 81-156 (380)
410 KOG1308 Hsp70-interacting prot 41.9 23 0.0005 34.6 2.8 84 168-253 127-214 (377)
411 KOG4642 Chaperone-dependent E3 40.2 1.6E+02 0.0034 27.5 7.5 76 58-142 32-107 (284)
412 KOG2034 Vacuolar sorting prote 40.1 6.1E+02 0.013 28.9 27.1 53 197-249 364-417 (911)
413 cd00280 TRFH Telomeric Repeat 39.2 1.5E+02 0.0032 26.4 6.9 55 87-141 85-139 (200)
414 KOG4567 GTPase-activating prot 38.8 1.9E+02 0.0041 28.1 8.0 60 531-595 261-320 (370)
415 KOG4507 Uncharacterized conser 38.5 75 0.0016 33.6 5.9 96 168-265 620-719 (886)
416 COG5108 RPO41 Mitochondrial DN 38.2 1.6E+02 0.0034 31.9 8.2 73 520-595 33-115 (1117)
417 KOG0376 Serine-threonine phosp 38.2 34 0.00073 35.2 3.4 80 59-149 27-106 (476)
418 smart00777 Mad3_BUB1_I Mad3/BU 37.8 52 0.0011 27.2 3.9 54 158-213 68-121 (125)
419 PRK10941 hypothetical protein; 37.8 1.3E+02 0.0027 29.1 7.1 62 73-142 183-244 (269)
420 PF12796 Ank_2: Ankyrin repeat 37.8 49 0.0011 25.0 3.8 54 590-655 30-86 (89)
421 PF04910 Tcf25: Transcriptiona 37.0 4.7E+02 0.01 26.6 18.6 54 86-140 9-67 (360)
422 PF10366 Vps39_1: Vacuolar sor 36.9 2.2E+02 0.0047 22.9 7.3 28 222-249 40-67 (108)
423 KOG3824 Huntingtin interacting 36.5 97 0.0021 29.9 5.8 74 63-146 106-181 (472)
424 PRK14956 DNA polymerase III su 36.2 5.6E+02 0.012 27.3 13.9 89 509-619 196-284 (484)
425 PF11663 Toxin_YhaV: Toxin wit 35.2 39 0.00086 28.0 2.8 32 233-266 107-138 (140)
426 PF12862 Apc5: Anaphase-promot 35.0 2.1E+02 0.0046 22.1 7.4 21 370-390 48-68 (94)
427 PF04192 Utp21: Utp21 specific 34.7 3.6E+02 0.0079 25.4 9.4 75 585-668 112-188 (237)
428 COG5159 RPN6 26S proteasome re 34.2 4.4E+02 0.0094 25.4 16.3 53 552-604 129-186 (421)
429 PF15297 CKAP2_C: Cytoskeleton 33.9 4.7E+02 0.01 26.2 10.1 64 564-629 119-186 (353)
430 PF05476 PET122: PET122; Inte 33.4 4.2E+02 0.0091 25.0 9.9 90 560-651 22-113 (267)
431 KOG0991 Replication factor C, 33.2 4.1E+02 0.0089 24.9 12.1 38 512-549 236-274 (333)
432 PF10475 DUF2450: Protein of u 32.5 4.9E+02 0.011 25.5 12.7 111 225-344 102-217 (291)
433 COG0735 Fur Fe2+/Zn2+ uptake r 32.5 2.6E+02 0.0056 23.9 7.5 25 643-667 42-66 (145)
434 KOG3364 Membrane protein invol 31.8 3.2E+02 0.0068 23.1 7.7 67 361-427 30-100 (149)
435 KOG2908 26S proteasome regulat 31.5 4.6E+02 0.01 26.1 9.5 61 557-617 84-154 (380)
436 PRK10564 maltose regulon perip 31.4 91 0.002 30.2 4.9 43 545-587 253-296 (303)
437 PF09454 Vps23_core: Vps23 cor 30.8 1.2E+02 0.0027 21.6 4.3 50 580-630 5-54 (65)
438 PF14840 DNA_pol3_delt_C: Proc 30.6 1.7E+02 0.0036 24.3 5.9 17 687-703 102-118 (125)
439 PF11846 DUF3366: Domain of un 30.5 2E+02 0.0043 26.0 7.0 32 360-391 141-172 (193)
440 PF11817 Foie-gras_1: Foie gra 30.3 2.6E+02 0.0056 26.6 8.0 82 340-427 161-247 (247)
441 PRK14956 DNA polymerase III su 30.2 7E+02 0.015 26.6 13.0 30 286-315 197-226 (484)
442 PRK06585 holA DNA polymerase I 30.1 5.8E+02 0.013 25.6 15.7 28 506-533 155-182 (343)
443 PRK11639 zinc uptake transcrip 29.6 3E+02 0.0066 24.2 7.7 61 539-600 17-77 (169)
444 PRK15180 Vi polysaccharide bio 29.6 6.7E+02 0.015 26.2 30.9 89 229-318 331-420 (831)
445 PF09986 DUF2225: Uncharacteri 29.0 4.2E+02 0.009 24.5 8.8 102 81-185 87-195 (214)
446 PF14669 Asp_Glu_race_2: Putat 28.9 4.4E+02 0.0095 23.8 15.1 59 222-280 133-205 (233)
447 PF02184 HAT: HAT (Half-A-TPR) 28.6 84 0.0018 18.7 2.6 25 598-624 2-26 (32)
448 KOG2396 HAT (Half-A-TPR) repea 28.3 7.4E+02 0.016 26.3 38.1 93 544-639 455-551 (568)
449 PRK14958 DNA polymerase III su 27.5 8.1E+02 0.017 26.4 12.5 74 541-617 193-279 (509)
450 KOG2063 Vacuolar assembly/sort 27.2 1E+03 0.022 27.6 16.9 25 327-351 507-531 (877)
451 PF02607 B12-binding_2: B12 bi 27.1 1.4E+02 0.003 22.0 4.5 38 595-632 13-50 (79)
452 KOG2471 TPR repeat-containing 26.9 2.1E+02 0.0046 29.8 6.7 129 71-202 240-380 (696)
453 TIGR02710 CRISPR-associated pr 26.1 4.5E+02 0.0098 26.8 9.0 60 118-180 135-196 (380)
454 PF03745 DUF309: Domain of unk 26.1 2.4E+02 0.0052 19.9 5.1 16 375-390 11-26 (62)
455 COG0735 Fur Fe2+/Zn2+ uptake r 25.3 3.1E+02 0.0068 23.4 6.8 63 385-448 8-70 (145)
456 PF11663 Toxin_YhaV: Toxin wit 25.3 55 0.0012 27.2 2.0 33 80-112 104-136 (140)
457 PRK13342 recombination factor 25.3 7.9E+02 0.017 25.6 20.4 55 376-430 243-302 (413)
458 PF15297 CKAP2_C: Cytoskeleton 25.2 1.6E+02 0.0035 29.2 5.4 61 84-149 115-176 (353)
459 PRK10941 hypothetical protein; 24.7 6.4E+02 0.014 24.4 11.1 77 366-443 184-261 (269)
460 KOG2005 26S proteasome regulat 24.6 9.8E+02 0.021 26.4 25.3 137 512-651 502-652 (878)
461 PRK07003 DNA polymerase III su 24.5 1.1E+03 0.024 27.0 13.6 136 565-706 181-337 (830)
462 COG1466 HolA DNA polymerase II 24.4 7.3E+02 0.016 24.9 13.6 91 535-628 149-252 (334)
463 PF09454 Vps23_core: Vps23 cor 24.0 2.1E+02 0.0045 20.4 4.5 48 361-409 6-53 (65)
464 KOG0292 Vesicle coat complex C 23.8 1.1E+03 0.025 27.0 12.0 117 559-678 1002-1141(1202)
465 KOG4567 GTPase-activating prot 23.7 4.8E+02 0.01 25.5 8.0 71 383-458 263-343 (370)
466 PRK14951 DNA polymerase III su 23.6 9.7E+02 0.021 26.6 11.6 75 540-617 197-284 (618)
467 smart00386 HAT HAT (Half-A-TPR 23.6 1.5E+02 0.0032 16.6 4.0 15 597-611 1-15 (33)
468 PHA03100 ankyrin repeat protei 23.5 4.9E+02 0.011 27.6 9.7 13 385-397 158-170 (480)
469 TIGR01503 MthylAspMut_E methyl 23.1 8.9E+02 0.019 25.4 12.4 112 235-352 68-197 (480)
470 PF12926 MOZART2: Mitotic-spin 23.0 3.5E+02 0.0075 20.7 8.0 43 419-461 29-71 (88)
471 PF06957 COPI_C: Coatomer (COP 23.0 2.7E+02 0.0058 28.9 6.8 24 117-140 122-145 (422)
472 PF10516 SHNi-TPR: SHNi-TPR; 22.8 1.8E+02 0.0039 18.1 3.5 29 72-100 2-30 (38)
473 COG0320 LipA Lipoate synthase 22.6 94 0.002 29.5 3.2 56 269-328 193-248 (306)
474 PRK06645 DNA polymerase III su 22.6 9.8E+02 0.021 25.8 11.7 22 376-397 270-291 (507)
475 KOG4507 Uncharacterized conser 22.5 7.3E+02 0.016 26.8 9.7 146 289-444 569-721 (886)
476 PRK09857 putative transposase; 22.0 6.1E+02 0.013 24.9 8.9 65 552-617 210-274 (292)
477 KOG2063 Vacuolar assembly/sort 21.9 1.3E+03 0.028 26.8 27.5 116 222-337 505-639 (877)
478 PRK09687 putative lyase; Provi 21.9 7.5E+02 0.016 24.1 27.4 122 322-461 140-262 (280)
479 PRK09462 fur ferric uptake reg 21.8 4.8E+02 0.011 22.3 7.5 12 601-612 35-46 (148)
480 TIGR01987 HI0074 nucleotidyltr 21.8 4.6E+02 0.01 21.7 7.2 40 305-344 38-79 (123)
481 PRK12357 glutaminase; Reviewed 21.7 5.4E+02 0.012 25.5 8.2 57 597-655 191-254 (326)
482 KOG1497 COP9 signalosome, subu 21.6 7.9E+02 0.017 24.3 14.8 109 73-186 105-215 (399)
483 PRK11619 lytic murein transgly 21.6 1.2E+03 0.025 26.2 31.8 315 263-647 40-372 (644)
484 cd08819 CARD_MDA5_2 Caspase ac 21.6 3.8E+02 0.0082 20.6 6.4 37 234-275 49-85 (88)
485 COG4941 Predicted RNA polymera 21.5 8.2E+02 0.018 24.4 10.5 127 79-216 264-390 (415)
486 PRK14700 recombination factor 21.4 7.9E+02 0.017 24.1 14.6 131 511-642 63-225 (300)
487 PF02847 MA3: MA3 domain; Int 21.3 4.3E+02 0.0093 21.1 8.3 65 587-654 6-70 (113)
488 KOG2471 TPR repeat-containing 21.3 9.9E+02 0.021 25.3 14.3 78 551-630 286-381 (696)
489 PF10255 Paf67: RNA polymerase 21.2 5E+02 0.011 26.8 8.3 65 76-140 80-149 (404)
490 PF02847 MA3: MA3 domain; Int 20.9 4.4E+02 0.0094 21.0 7.4 62 225-288 6-69 (113)
491 PF09477 Type_III_YscG: Bacter 20.8 4.5E+02 0.0098 21.1 8.5 17 410-426 81-97 (116)
492 cd07153 Fur_like Ferric uptake 20.6 1.9E+02 0.0042 23.3 4.6 45 368-412 5-49 (116)
493 PF10255 Paf67: RNA polymerase 20.5 2.3E+02 0.0049 29.2 5.8 27 222-248 165-191 (404)
494 PF05664 DUF810: Protein of un 20.5 9.8E+02 0.021 26.9 10.9 34 543-576 212-249 (677)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-66 Score=583.66 Aligned_cols=587 Identities=17% Similarity=0.182 Sum_probs=502.2
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhh----------------------------HHHHHhHHH
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (723)
+...++.++..+++.|++++|..+|+.|...|..|+..+.... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 4677889999999999999999999999888766654432111 122356778
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.|++.|+++.|.++|++|.+ |+. .+++.++.++.. .|++++|+.+|++|...++.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~----~d~----~~~n~li~~~~~---~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE----RDL----FSWNVLVGGYAK---AGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC----CCe----eEHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 88999999999999999874 443 477888887666 8999999999999999988775 45688899999
Q ss_pred hcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004922 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 276 (723)
...+++..+.+++..+ .++..+++.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999999999887764 56778999999999999999999999999975 78999999999999999999999
Q ss_pred HHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 277 ~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
++|++|.+.|+.||..||+.++.+++ ++.+.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|+.|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999866 7899999999999999999999999999999999999999999999985
Q ss_pred hcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
+|+.++++|++.|++++|.++|++|...+... ++.....+...... .....+...|. .++.||
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs-----~~~mi~~~~~~g~~-----------~eA~~lf~~m~-~~~~pd 488 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVIS-----WTSIIAGLRLNNRC-----------FEALIFFRQML-LTLKPN 488 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee-----HHHHHHHHHHCCCH-----------HHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999987643211 11111000000000 00000111122 247999
Q ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 515 ~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
..||+.+|.+|++ +.+.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|+++ .||..+||++|.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 9999999999985 78999999999999999999999999999999999999999999987 6899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh-hh
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEWCE-GV 670 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~-g~ 670 (723)
|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++ ++++|++|. +.|+.|+..+|+.++++|++ |.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999666 666999999 69999999999999999999 99
Q ss_pred hhhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhhhhhh
Q 004922 671 IQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENL 712 (723)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 712 (723)
+++|.++.+++. -++....+..++..+...+..++
T Consensus 641 ~~eA~~~~~~m~-------~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 641 LTEAYNFINKMP-------ITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChHH
Confidence 999999988763 23445555555555555444443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-63 Score=550.21 Aligned_cols=513 Identities=21% Similarity=0.334 Sum_probs=396.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...|..+...+++.|++++|.++|+.|...+.. ++... ...++..+.+.|.+++|+.+|+.|.. |+.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~-------~~~li~~~~~~g~~~eAl~lf~~M~~----pd~- 437 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY-------HAKFFKACKKQRAVKEAFRFAKLIRN----PTL- 437 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHH-------HHHHHHHHHHCCCHHHHHHHHHHcCC----CCH-
Confidence 566777777777888888888888888777643 23221 13445556777888888888877763 543
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.+++.++.+|+. .|++++|.++|+.|.+.+..| +..+|+.|+.
T Consensus 438 ---~Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-------------------------------D~~tynsLI~ 480 (1060)
T PLN03218 438 ---STFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-------------------------------DCKLYTTLIS 480 (1060)
T ss_pred ---HHHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHH
Confidence 366777776665 788888888888888777554 3467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (723)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+++ |+++.
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888765 67888
Q ss_pred HHHHHHHHHH--cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 308 a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+ .| +.|+..+|+.+|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888888865 56788888888888888888888888888888876 44 678888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcc
Q 004922 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~ 465 (723)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-- 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-- 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888776543
Q ss_pred cccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcC
Q 004922 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~ 543 (723)
+.||..+||.+|.+|++ +.++|.++|++|...|
T Consensus 715 ---------------------------------------------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 715 ---------------------------------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 47888888888888874 6788888888888888
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 004922 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (723)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~ 600 (723)
+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 8888888888888888888888888888888888888888888888765432 1 2245
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhccccc
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~~~a~~~~~~ 680 (723)
+|..+|++|++.|+.||..||+.++.++++.+..+. +..++++|...+..|+..+|++||+++++- .++|..++++
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-~~~A~~l~~e 905 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY-DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-hHHHHHHHHH
Confidence 788888888888888888888888877666666554 444777777777788888888888887541 2457777666
Q ss_pred chHhhhc
Q 004922 681 VTLCRRT 687 (723)
Q Consensus 681 ~~~~~~~ 687 (723)
+...+-.
T Consensus 906 m~~~Gi~ 912 (1060)
T PLN03218 906 AASLGVV 912 (1060)
T ss_pred HHHcCCC
Confidence 6654443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-63 Score=550.62 Aligned_cols=476 Identities=20% Similarity=0.300 Sum_probs=438.5
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC-CcchHHHHHHHHHhcCC
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRD 236 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~~~ 236 (723)
++..+..+.+.|++++|+++|++|...+..+.+...+..++..|.+.|.+++|.++++.++. +..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 44444555568999999999999999998777778888899999999999999999998854 55889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKN 314 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~ 314 (723)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+++ |++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876 799999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
|...|+.||..+|+.||.+|++.|++++|.++|++|... ..| +.||..+|+++|.+|++.|++++|.++|+.|.+.|+
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999752 123 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCC
Q 004922 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474 (723)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~ 474 (723)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|+.|.+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G----------- 679 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG----------- 679 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred chhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWT 552 (723)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~ 552 (723)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..+|+
T Consensus 680 ------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 680 ------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred ------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999985 7899999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR-- 630 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 630 (723)
.||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred --cCChH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 631 --YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 631 --~g~~~----------------~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
++... -...|+.+|++|.+.|+.||..||+.+|.++++ +....+....+++.
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 11110 124588999999999999999999999988876 66666666655444
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-61 Score=544.80 Aligned_cols=563 Identities=16% Similarity=0.192 Sum_probs=491.5
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
..+......++.++..|.+.|+++.|..+|+.|... +. ..++.++..|++.|++++|+++|++|.+.|+
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d~-------~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DL-------FSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC----Ce-------eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 344455778999999999999999999999999643 32 2346778889999999999999999999999
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC-Ccch
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADIL 223 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 223 (723)
.|+.. +++.++++|.. .++++.+.+++..+.+.|..+ +...++.++..|.+.|+++.|.++|+.++. +..+
T Consensus 184 ~Pd~~----t~~~ll~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s 255 (857)
T PLN03077 184 RPDVY----TFPCVLRTCGG---IPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255 (857)
T ss_pred CCChh----HHHHHHHHhCC---ccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcch
Confidence 99776 67778887765 788999999999999999876 456789999999999999999999999865 5689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc-
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~- 302 (723)
|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+|++++..++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 -~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
|+++.|.++|++|. .||..+||.++.+|++.|++++|.++|++|.. .| +.||..+|+.++.+|++.|++++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHH
Confidence 79999999999997 57999999999999999999999999999986 55 89999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 56889999999999999999999999999975
Q ss_pred hhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHH
Q 004922 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEM 539 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m 539 (723)
. ..++..+. .......... ...-....+...+.+.|+.+|..++|++|.+|++ +.++|.++|+.+
T Consensus 484 ~-~~pd~~t~-~~lL~a~~~~-----------g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 484 T-LKPNSVTL-IAALSACARI-----------GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred C-CCCCHhHH-HHHHHHHhhh-----------chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 3 32221110 0000000000 0000011223345667889999999999999985 789999999987
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCH
Q 004922 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNL 618 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~ 618 (723)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|. +.|+.|+.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 589999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
.+|++++.+|++.|++++| .+++++| .++||..+|++|+.+|.. |+.+.+....+++.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA---~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEA---YNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHhCCCHHHH---HHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999998775 4588887 589999999999999876 77776665554444
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-59 Score=515.99 Aligned_cols=461 Identities=16% Similarity=0.222 Sum_probs=411.0
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcC-CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
..++..+.+.|++++|+++|++|.+.+ ..|+.. +++.++.+|.. .++++.|..++..|.+.|..|+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~~------ 157 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEPD------ 157 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCcc------
Confidence 456677888899999999999988754 556554 77788887776 7899999999999998886543
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|
T Consensus 158 -------------------------~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 158 -------------------------QYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -------------------------hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHH
Confidence 46788899999999999999999999975 8899999999999999999999
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004922 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (723)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 353 (723)
+++|++|.+.|+.||..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999876 5788899999999999999999999999999999999999999999885
Q ss_pred hhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004922 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 354 ~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (723)
.+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 287 ------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 287 ------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|+.++++|++.|++++|.++|++|. .|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~ 389 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RK 389 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CC
Confidence 999999999999999999999999874 67
Q ss_pred CHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004922 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAI 590 (723)
Q Consensus 514 ~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 590 (723)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999985 6899999999999999999999999999999999999999999999976 69999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Q 004922 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE- 668 (723)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~- 668 (723)
.+|++.|++++|.+++++| ++.||..+|++++.+|+..|+++.+++ +++++. ++.|+ ..+|..|+..|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhC
Confidence 9999999999999998876 578999999999999999999887655 566664 44454 6689999999998
Q ss_pred hhhhhhhcccccchHhhh
Q 004922 669 GVIQDKNQNQGEVTLCRR 686 (723)
Q Consensus 669 g~~~~a~~~~~~~~~~~~ 686 (723)
|++++|.++.+.+...+-
T Consensus 542 G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999988876654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-56 Score=494.74 Aligned_cols=468 Identities=16% Similarity=0.229 Sum_probs=427.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...|+.++..+.+.|++++|+.+|+.|...+ ..|+.+ .+..++.++.+.++++.|.+++..|.+.|+.|+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-------t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-------TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4589999999999999999999999998765 355533 34677788899999999999999999999999765
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
+++.++..+.. .|++++|.++|++|.+ ++..+|+.++.
T Consensus 160 ----~~n~Li~~y~k---~g~~~~A~~lf~~m~~-----------------------------------~~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLLMHVK---CGMLIDARRLFDEMPE-----------------------------------RNLASWGTIIG 197 (697)
T ss_pred ----HHHHHHHHHhc---CCCHHHHHHHHhcCCC-----------------------------------CCeeeHHHHHH
Confidence 66667665554 8999999999998743 23478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (723)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|++++..|+ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
|.++|++|. ++|..+||.++.+|++.|++++|.++|++|.. .| +.||..||+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999996 57999999999999999999999999999986 55 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccc
Q 004922 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (723)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~ 467 (723)
.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999995 5799999999999999999999999999998765
Q ss_pred cCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHH-cCC
Q 004922 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~-~~~ 544 (723)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 59999999999999985 68999999999986 699
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYIT 623 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 623 (723)
.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999998876 5799999999999999999999999999999974 567 4789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCC
Q 004922 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (723)
Q Consensus 624 ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p 654 (723)
+++.|++.|++++|. +++++|.+.|++.
T Consensus 534 L~~~y~~~G~~~~A~---~v~~~m~~~g~~k 561 (697)
T PLN03081 534 LLNLYNSSGRQAEAA---KVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHhCCCHHHHH---HHHHHHHHcCCcc
Confidence 999999999988854 5999999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-28 Score=286.96 Aligned_cols=538 Identities=14% Similarity=0.059 Sum_probs=317.9
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+...|.. ...+..++..+.+.|++++|+..++.+... .|.... .+..+...+...|++++|.+.|++
T Consensus 318 ~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 318 LNQILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPA------ALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33335566666 666777778888888888888888887766 333221 223344456778888888888888
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+ ..|+.. ..+..+.. .+...|++++|+..++.+.+.. |........++..+.+.|++++|.+.+..+
T Consensus 389 ~~~--~~~~~~---~~~~~l~~---~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 389 ATE--LDPENA---AARTQLGI---SKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHh--cCCCCH---HHHHHHHH---HHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 776 344322 12222222 2333677777887777776644 445555666677777777777777776553
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|.+..++..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 4555677777777777777777777777776642 2345566677777777777777777777776653 2244455
Q ss_pred HHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
..+...+ .|+.++|...++++...+ +.+...+..+...+...|++++|..+++.+... .+.+...|..+..+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence 5554443 367777777777776654 345556666777777777777777777777642 23455677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|...|++++|...|+++.+.... +...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665422 55666777777777777777777777776653 34566677777777777777777
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~ 530 (723)
.++++.+.... +.+...+..+...+. ++.+
T Consensus 689 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 689 KKIAKSLQKQH------------------------------------------------PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHHhhC------------------------------------------------cCChHHHHHHHHHHHHCCCHH
Confidence 77777665432 122233333333332 2445
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|...+..+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...++.+...|...|+.++|.++|+++.
T Consensus 721 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5555555554432 223444444555555555555555555554432 2234444455555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccch
Q 004922 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVT 682 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~ 682 (723)
+.. ..+...++.+...+...|+ .+ |+.+++++.+.... +..++..+...+.+ |++++|.+.+.+..
T Consensus 798 ~~~-p~~~~~~~~l~~~~~~~~~-~~---A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 798 KKA-PDNAVVLNNLAWLYLELKD-PR---ALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCc-HH---HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2344445555555555554 22 33344444432211 22333344444443 55555555444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-27 Score=277.44 Aligned_cols=539 Identities=13% Similarity=0.082 Sum_probs=350.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..+...+...|++++|...+++++.. .|..... ...+...+...|++++|...++.
T Consensus 284 ~~~~l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 284 LQDALKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQA------RRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33345556665 445555666677777777777777777766 3332221 12333446677777777777777
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+. .|... ..+..+... +...|++++|..+|+++.+.. |+....+..++..+...|++++|.+.+..+
T Consensus 355 ~~~~--~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 355 ALGL--DPDDP---AALSLLGEA---YLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHhc--CCCCH---HHHHHHHHH---HHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7653 23211 233333333 333677777777777776644 566666777777777777777777776653
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|........++..+.+.|++++|..+++.+... .+.+..++..+...|...|++++|...|+++.+... .+...+
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 502 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAA 502 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHH
Confidence 344455666777777777777777777777653 234566777777777777777777777777766431 222333
Q ss_pred HHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 295 NSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
..+... ..|++++|.+.|+.+...+ +.+..++..+...+.+.|+.++|...++++... .+.+...+..++..
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHH
Confidence 333332 3467777777777776654 345667777777777777777777777777652 23445566677777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|.+.|++++|..+++.+.... +.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 3356677777777777777777777777776653 34556677777777777777777
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~ 530 (723)
...++++.... +.+..++..+...+. ++.+
T Consensus 655 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 655 ITSLKRALELK------------------------------------------------PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHhcC------------------------------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 77777765431 233455555555554 4677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|..+++.+.+.+ +.+...+..+...+.+.|++++|...|+++... .|+..++..+..++.+.|++++|.+.++++.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777654 345566677777777777777777777777764 3455666667777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchH
Q 004922 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTL 683 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~ 683 (723)
+.. ..+...+..+...|.+.|+.++ |..+|+++.+... .+...++.+...+.+ |+ .+|...+++...
T Consensus 764 ~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 764 KTH-PNDAVLRTALAELYLAQKDYDK---AIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HhC-CCCHHHHHHHHHHHHHCcCHHH---HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 642 3466677777777777777655 4447777766543 356667777776666 55 556666555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.4e-20 Score=218.81 Aligned_cols=580 Identities=12% Similarity=0.016 Sum_probs=380.7
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHH----------HHHhHHHhhhccCc
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (723)
+.+.+..+|++ +..+..++..+...|+.++|.+.++++.+.. |.......... ........+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 44457788998 8889999999999999999999999999994 44322211100 11233445789999
Q ss_pred cchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH
Q 004922 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (723)
Q Consensus 129 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (723)
+++|+..|+.+.+. .|.... .... +..... ...|+.++|+..|+++++.. |.+...+..++..+...|+++
T Consensus 128 ~~eA~~~~~~~l~~--~p~~~~--la~~-y~~~~~--~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNG--APPELD--LAVE-YWRLVA--KLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccC--CCCChH--HHHH-HHHHHh--hCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 99999999999974 332210 0111 111111 12599999999999999876 888888999999999999999
Q ss_pred HHHHHhhhCCCCc------------------------chH----------------------------------HHHHHH
Q 004922 209 LAIRYACIVPRAD------------------------ILF----------------------------------CNFVRE 230 (723)
Q Consensus 209 ~A~~~~~~~~~~~------------------------~~~----------------------------------~~l~~~ 230 (723)
+|+..++.+.... ..+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9998877641100 000 012445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHH-----------
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLM----------- 298 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll----------- 298 (723)
+...|++++|+..|++..+... .+..++..+..+|.+.|++++|+..|++..+..... +...|..++
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6778999999999999987532 378889999999999999999999999998764322 222222221
Q ss_pred ---hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 299 ---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 299 ---~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
....+++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-
Confidence 123479999999999998875 446677778889999999999999999999873 1233445555655553
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004922 376 AKWWQMALKVKEDMLSAGVT--------PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (723)
.++.++|..+++.+...... .....+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 45677777777654322100 012245566677777788888888888777653 335566667777777888
Q ss_pred CHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH---------H
Q 004922 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT---------Y 518 (723)
Q Consensus 448 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---------~ 518 (723)
++++|...++++......... ..... ..+.. .......... ....+......++... +
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~--~~~a~-al~l~-~~~~~~~Al~---------~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPE--QVYAY-GLYLS-GSDRDRAALA---------HLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHH--HHHHH-HHHHH-hCCCHHHHHH---------HHHhCCchhcChhHHHHHHHHhhhHH
Confidence 888888888776643221100 00000 00000 0000000000 0000000000111111 1
Q ss_pred HHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 519 NILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 519 ~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
......+. ++.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 11222232 467788887762 34456677788899999999999999999999853 22577888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHh-h
Q 004922 597 KRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK--A---NDTYLKELIEEWCE-G 669 (723)
Q Consensus 597 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~--p---~~~~~~~li~~~~~-g 669 (723)
|+.++|.+.++...+. .| +..++..+..++...|+.++| .++++++...... | +...+..+...+.+ |
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA---~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA---QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH---HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999988753 44 456677778888889997774 5588888764432 2 22344444555554 8
Q ss_pred hhhhhhcccccchH
Q 004922 670 VIQDKNQNQGEVTL 683 (723)
Q Consensus 670 ~~~~a~~~~~~~~~ 683 (723)
+.++|.+.+...+.
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 89999888776653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=3.2e-19 Score=207.44 Aligned_cols=578 Identities=12% Similarity=0.043 Sum_probs=339.7
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
......+......++.+.|.+.+.+++.. +|+.... +...+..+.+.|+.++|...++++.+ +.|+....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~------~~~~~~~~l~~g~~~~A~~~l~~l~~--~~P~~~~~ 98 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELI--DPNNPDV------IAARFRLLLRQGDSDGAQKLLDRLSQ--LAPDSNAY 98 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHH------HHHHHHHHHhCCCHHHHHHHHHHHHh--hCCCChHH
Confidence 33555677788899999999999999988 6664333 34455568899999999999999998 45654322
Q ss_pred cchhhh----------hHHHHHHhhccchHHHHHHHHHHHHhcCCCCccccc-HHHHHHHHhcCCChHHHHHHhhhC---
Q 004922 152 GSGFKL----------LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE-EFRIVQLCVNKPDVNLAIRYACIV--- 217 (723)
Q Consensus 152 ~~~~~~----------l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (723)
...... .+.....+...|++++|+..|+.+.+.. |+.... ...........++.++|++.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 111111 1222223445899999999999998754 333221 112222233568999999988775
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 004922 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-------------------NMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
|.+..++..+...+...|++++|+..++++.+..... ....+...+..+-.......|..
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHH
Confidence 7777888899999999999999999999986532100 00111111222222223445555
Q ss_pred HHHHHHhCCCcccHHH-HHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc
Q 004922 278 IYEDLRSQNVTLNIYV-FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 356 (723)
.+..+......|+... .........|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+....
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555443322333221 11222234578888888888887764 346777778888888888888888888887763110
Q ss_pred CCccccHHHH------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 357 GVLKLDVFTY------------STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 357 g~~~~~~~~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
.+....| ......+.+.|++++|...|+++++..+. +...+..+...+...|++++|++.|++.
T Consensus 336 ---~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 336 ---SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred ---ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 12234566788888888888888876533 5666777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccc
Q 004922 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (723)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (723)
.+.. +.+...+..+...|. .++.++|..+++.+..............-....+........ .. .-.......
T Consensus 412 L~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~----~~--g~~~eA~~~ 483 (1157)
T PRK11447 412 LRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE----NQ--GKWAQAAEL 483 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH----HC--CCHHHHHHH
Confidence 7753 233445555555443 345566666655433221000000000000000000000000 00 000000000
Q ss_pred cccccCCCcC-HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHH----------------------------
Q 004922 505 FDKRFSFKPT-TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI---------------------------- 553 (723)
Q Consensus 505 ~~~~~~~~p~-~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~---------------------------- 553 (723)
+.+.....|+ ...+..+...|. ++.++|...++++.+.... +...+..
T Consensus 484 ~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 484 QRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 0000112332 233333333333 3566777766666653211 2222222
Q ss_pred ----------------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 004922 554 ----------------LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP- 616 (723)
Q Consensus 554 ----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 616 (723)
+...+...|+.++|..+++. ...+...+..+...+.+.|+.++|++.|++..+. .|
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~ 635 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPG 635 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 22334445555555555541 1334556677888899999999999999999874 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-hhhhhhhcccccchHhhhc
Q 004922 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRT 687 (723)
Q Consensus 617 ~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~~~ 687 (723)
+...+..+...+...|+.++|.+ .++...+. .|+ ...+..+...+.+ |+.++|.+.++.+......
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~---~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARA---QLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHH---HHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 68889999999999999887554 66665543 333 4455556666666 9999999988877655433
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.9e-21 Score=187.73 Aligned_cols=370 Identities=13% Similarity=0.104 Sum_probs=314.6
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
.+.+++..|-. .+.|..++..+-..|++.+|+.+|+.+++. +|... +++.++..++..+|+.+.|...|..
T Consensus 105 ~~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fi------da~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 105 SLLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFI------DAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchhh------HHHhhHHHHHHhcCCCcccHHHHHH
Confidence 33456777777 889999999999999999999999999999 77643 4455666679999999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
.++ +.|+.....+..+.|+++ .|+.++|-..+-+.++.. |.....|+.++-.+..+|+.-.|++.|+++
T Consensus 176 alq--lnP~l~ca~s~lgnLlka------~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLKA------EGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHh--cCcchhhhhcchhHHHHh------hcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 997 788776555555555542 799999999999888755 888999999999999999999999999885
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH
Q 004922 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (723)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~ 292 (723)
|.-..+|.+|...|-..+.++.|+..|.+.... .| ...++..+...|-..|..+-|+..|++..+. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 555689999999999999999999999998863 45 4678889999999999999999999999876 455 45
Q ss_pred HHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHH
Q 004922 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTI 369 (723)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~l 369 (723)
.|+.+-.+.. |++.+|.+.|....... +......+.|.+.|...|.+++|..+|..... +.|.- ..++.|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNL 394 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNL 394 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhH
Confidence 6777777644 89999999999998864 33467788899999999999999999999887 55554 578999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
...|-+.|++++|+..|++.+.. .|+ ...|+.+...|-..|+.+.|.+.+.+.++.+ +.-....+.+...|-.+|+
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCC
Confidence 99999999999999999999875 555 5689999999999999999999999998763 2234578889999999999
Q ss_pred HHHHHHHHHHhhh
Q 004922 449 FDRAFRLFRSWTL 461 (723)
Q Consensus 449 ~~~a~~l~~~~~~ 461 (723)
+.+|++-|+...+
T Consensus 472 i~~AI~sY~~aLk 484 (966)
T KOG4626|consen 472 IPEAIQSYRTALK 484 (966)
T ss_pred cHHHHHHHHHHHc
Confidence 9999999998775
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-19 Score=177.02 Aligned_cols=438 Identities=16% Similarity=0.151 Sum_probs=282.2
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHH
Q 004922 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (723)
Q Consensus 60 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 139 (723)
+++....|.. ......|+..+-+.|++++|+......-.. +|+.-..++..+.. +.+..+++.-..--...
T Consensus 38 ~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~a 108 (966)
T KOG4626|consen 38 LQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLLA 108 (966)
T ss_pred HHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhhh
Confidence 3443344444 344567777788899999999988877666 55554444444333 55666666544443334
Q ss_pred hhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--
Q 004922 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (723)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (723)
++ ..| .....++.+.+.+.. .|+..+|+.+++.+++.. |+....|..++.++...|+.+.|.+.|...
T Consensus 109 ~r--~~~---q~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 109 IR--KNP---QGAEAYSNLANILKE---RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hh--ccc---hHHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 43 233 133466666666555 899999999999998865 777777777777777777776666655442
Q ss_pred --CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 218 --PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
|...-+...+...+-..|++++|...|.+..+. .|. ..+|..|...+-..|+...|+..|++.++.
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------- 247 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------- 247 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---------
Confidence 322233334555555566666666666666552 232 345666666666666666666666665543
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKV 372 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~ 372 (723)
.|+ ...|-.|.+.|...+.++.|...|..... ..|+ ...+..+...
T Consensus 248 --------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 248 --------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN------LRPNHAVAHGNLACI 295 (966)
T ss_pred --------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh------cCCcchhhccceEEE
Confidence 233 45677788888888888888888888776 3444 4567777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
|...|.++-|++.|++.++..+. =...|+.|..++-..|++.+|.+.+.+..... .-.....+.+...|...|.++.|
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 88888888888888888875322 25678888888888888888888888887753 44566788888888888888888
Q ss_pred HHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHH
Q 004922 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532 (723)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a 532 (723)
..+|.....- .|.
T Consensus 374 ~~ly~~al~v-------------------------------------------------~p~------------------ 386 (966)
T KOG4626|consen 374 TRLYLKALEV-------------------------------------------------FPE------------------ 386 (966)
T ss_pred HHHHHHHHhh-------------------------------------------------Chh------------------
Confidence 8888654421 111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
-...++.|...|-.+|++++|+..+++.+. ++|+ ...|+.+...|-..|+.+.|.+.+.+.+.
T Consensus 387 --------------~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 387 --------------FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred --------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 122345556666666666666666666665 4555 44666666666666666666666666655
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 612 YQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 612 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
+.|. ...++-|...|-.+|++.+ |+.-++...+
T Consensus 451 --~nPt~AeAhsNLasi~kDsGni~~---AI~sY~~aLk 484 (966)
T KOG4626|consen 451 --INPTFAEAHSNLASIYKDSGNIPE---AIQSYRTALK 484 (966)
T ss_pred --cCcHHHHHHhhHHHHhhccCCcHH---HHHHHHHHHc
Confidence 3453 4455566666666666544 3334444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=9.5e-17 Score=178.04 Aligned_cols=501 Identities=9% Similarity=-0.049 Sum_probs=295.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+...+..+|++ ...+..++..|.+.|++++|+..+++++.. +|+.......+ ...+++++|..+|++
T Consensus 67 l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------a~i~~~~kA~~~ye~ 133 (987)
T PRK09782 67 FEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------AAIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH----------HHhccChhHHHHHHH
Confidence 55568999999 999999999999999999999999999999 66543332221 122999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHH-----HHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH
Q 004922 139 LNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (723)
+.+ ..|+... .+..+... ...+. +.++|.+.++ .......|........+.+.|.+.+++++|+..
T Consensus 134 l~~--~~P~n~~---~~~~la~~~~~~~~l~y~---q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 134 LLA--QQKACDA---VPTLRCRSEVGQNALRLA---QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHH--hCCCChh---HHHHHHHHhhccchhhhh---hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 998 4554431 21111111 01122 2233333333 222221122333334445666666666666665
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 004922 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 214 ~~~~----~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
+..+ |.+......|..+|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 5543 2233334445555555 244 555555332 12235555556666666666666666655554332111
Q ss_pred -ccHHHHH------------------------------------------------------------------------
Q 004922 289 -LNIYVFN------------------------------------------------------------------------ 295 (723)
Q Consensus 289 -~~~~~~~------------------------------------------------------------------------ 295 (723)
|+..+|.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 1111110
Q ss_pred -----------------------HHHhhhcCChHHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCCh---HHHHHH-
Q 004922 296 -----------------------SLMNVNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGNT---VLAQEI- 346 (723)
Q Consensus 296 -----------------------~ll~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~---~~A~~~- 346 (723)
+.+....|+.++|.++|...... +...+......++..|.+.+.. .++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 01111123334444444444331 0122333344555666655442 222111
Q ss_pred ---------------------HHHHHhhhhcCCccc--cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 347 ---------------------YGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 347 ---------------------~~~~~~~~~~g~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
++.+... -+..++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1111111 010123 45566767666666 6777788877777655 355444434
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 444556788888888888877554 444445556666777888888888888776542
Q ss_pred hhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
.|+.......+.... ++.++|...+.+..+. .|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 233222222222222 6788999998888874 4667788888888999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 004922 561 SGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQ 638 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 638 (723)
.|++++|+..+++..+. .|+ ...++.+..++...|+.++|++.+++..+. .| +...+..+..++...|++++|.
T Consensus 622 lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 622 RHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998875 454 667777778888899999999999988873 45 6778888888888999977754
Q ss_pred HHHHHHHHHHHcC
Q 004922 639 QCLAVYQDMWKAG 651 (723)
Q Consensus 639 ~a~~~~~~m~~~g 651 (723)
. .+++..+..
T Consensus 698 ~---~l~~Al~l~ 707 (987)
T PRK09782 698 H---YARLVIDDI 707 (987)
T ss_pred H---HHHHHHhcC
Confidence 4 666666543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.1e-18 Score=178.99 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
.+.....+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 33345556778899999999999987532 356688888889999999999999998887653211110
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+...+..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.
T Consensus 106 -------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 106 -------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHH
Confidence 1123444555555566666666666655541 1234455555666666666666666
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 384 KVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
+.++.+...+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666665554433221 133445555556666666666666665542 223445555556666666666666666665
Q ss_pred h
Q 004922 460 T 460 (723)
Q Consensus 460 ~ 460 (723)
.
T Consensus 241 ~ 241 (389)
T PRK11788 241 E 241 (389)
T ss_pred H
Confidence 4
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.1e-16 Score=174.73 Aligned_cols=433 Identities=11% Similarity=-0.022 Sum_probs=272.5
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+......+.+.|++++|+..|++++...++|. .+.++...|...|++++|++.++.+++ +.|+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~~-- 194 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAALE--LDPDYS-- 194 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCCH--
Confidence 3456778899999999999999999998844322 234556668899999999999999997 566432
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
..+......+...|++++|+..|..+.... +........++..+........+...+..-|.+...+..+...+
T Consensus 195 ----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 195 ----KALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 233333444555899999999887765543 11111111122211111122344444454455444444443333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-Cccc-HHHHHHHHhh--hcC
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g-~~~~-~~~~~~ll~~--~~~ 303 (723)
...+...+..-++...+ ..+. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.+ ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 22222222222222111 1111 1111111111 123478999999999988764 2233 2333333232 347
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
++++|+..|++..... +.+...|..+...+...|++++|...|+++... .+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887653 234557777888888889999999998888763 2345667888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..|++.+...+. +...+..+...+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|+......
T Consensus 420 ~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 420 KDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999888876533 56777778888888899999999998887752 4456778888888888888888888887765421
Q ss_pred cccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcC
Q 004922 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVG 543 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~ 543 (723)
|+...
T Consensus 498 -------------------------------------------------p~~~~-------------------------- 502 (615)
T TIGR00990 498 -------------------------------------------------KETKP-------------------------- 502 (615)
T ss_pred -------------------------------------------------Ccccc--------------------------
Confidence 11000
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 544 LSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 544 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
...+. ..++..+..+...|++++|..++++..+. .|+ ...+..+...+.+.|++++|.++|++..+
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00000 01111222233457888888888887764 343 45677788888888888888888888765
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.3e-15 Score=169.12 Aligned_cols=559 Identities=11% Similarity=-0.033 Sum_probs=333.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-.....+...|++++|+..|+++++. +|+.... ...+...|.+.|++++|+..+++..+ ..|++..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 344444455556669999999999999999 7775332 24566779999999999999999998 5665432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHH--------HhcCCChHHHHHHhhhCCCC--
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (723)
....+. . .+++++|+.+++++.... |.+...+..++.. |.+.+....++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222222 1 388899999999999877 7777778777777 777777777777 5555444
Q ss_pred cc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 221 ~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
+. ....+...|.+.|++++|+.++.++.+.++ .+......+..+|.. .++ +++..+++. .++-+...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999754 356667777778887 466 888888553 2235677777777
Q ss_pred hhhc--CChHHHHHHHHHHHHcCCC-cChhhH------------------------------HHHHHHHHHcCChHHHHH
Q 004922 299 NVNA--HDLKFTLEVYKNMQKLGVM-ADMASY------------------------------NILLKACCLAGNTVLAQE 345 (723)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~g~~-~~~~~~------------------------------~~ll~~~~~~~~~~~A~~ 345 (723)
..+. |+.+.|.+++.++...-.. |...++ -.++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7543 7888888888776543211 222111 112344445555554444
Q ss_pred HHHHHHh-----hhhcCC------------------c-cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C-CCCCHH
Q 004922 346 IYGEVKH-----LEAKGV------------------L-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-G-VTPNTI 399 (723)
Q Consensus 346 ~~~~~~~-----~~~~g~------------------~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~ 399 (723)
+.+.-.. ....+. . +-+......+.-...+.|+.++|.++|+..... + -.++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 3210000 000000 0 112222222223344566777777777766542 1 112233
Q ss_pred HHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHhCCHH
Q 004922 400 TWSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFD 450 (723)
Q Consensus 400 ~~~~li~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~ 450 (723)
...-++..|.+.+. ...+..+ .+..... +. ++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33455555555443 2222111 1111110 11 22 34445555544444 5555
Q ss_pred HHHHHHHHhhhhhcccccCCcCCCchhhhhh-hhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--h
Q 004922 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISN-MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (723)
Q Consensus 451 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~ 527 (723)
+|...+.+......... . ....... ...+... .....+.+.....|+...+..+...+. +
T Consensus 494 eAi~a~~~Al~~~Pd~~--~----~L~lA~al~~~Gr~e-----------eAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 494 VALYAWLQAEQRQPDAW--Q----HRAVAYQAYQVEDYA-----------TALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHhCCchH--H----HHHHHHHHHHCCCHH-----------HHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 56665544433221100 0 0000000 0000000 000000000011333333333333333 4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
+.++|...++...+.. +.+...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|.+.++
T Consensus 557 d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7889999999988764 223333334444555679999999999999874 6788889999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHhh
Q 004922 608 EMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCR 685 (723)
Q Consensus 608 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~ 685 (723)
+.... .| +...++.+..++...|+.++ |+..+++..+... -+...+..+-.++.. |++++|...+++.....
T Consensus 634 ~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 634 AALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99874 56 56677777778999999766 5557777777543 245667777777776 99999998877665443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=4.3e-18 Score=176.65 Aligned_cols=311 Identities=13% Similarity=0.096 Sum_probs=242.6
Q ss_pred cHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHH
Q 004922 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYS 367 (723)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~ 367 (723)
....+..+.....++++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.. .+...+ ....+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~ 111 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS---RPDLTREQRLLALQ 111 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc---CCCCCHHHHHHHHH
Confidence 333444555555677777888888887764 34567888899999999999999999998875 211111 135688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQAC 443 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~ 443 (723)
.+...|.+.|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88999999999999999999998764 346788999999999999999999999999886533321 2455677788
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
.+.|++++|...|+++.... +.+...+..+..
T Consensus 191 ~~~~~~~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~la~ 222 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD------------------------------------------------PQCVRASILLGD 222 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC------------------------------------------------cCCHHHHHHHHH
Confidence 89999999999999887532 223445556666
Q ss_pred HHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004922 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (723)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 601 (723)
.+. ++.++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHH
Confidence 665 478999999999997643333567889999999999999999999999885 5777777889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~ 657 (723)
|.++++++.+. .|+..+++.++..+...+...+..+++.++++|.+.+++|++.
T Consensus 301 A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 301 AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999874 7999999999988875332122444778999999988888766
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-15 Score=155.82 Aligned_cols=566 Identities=13% Similarity=0.048 Sum_probs=358.5
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH-HHhhHHHHHhHHHhhhccCccchHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA-SMLSLEMVASGIVKSIREGRIDCVVGVL 136 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 136 (723)
.|...++..|++ ...+-.-+...-..|+|..|+.+|..++...+ ..-. ..+..+.+ +++.|+.+.|+..|
T Consensus 152 ~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp--~~~aD~rIgig~C------f~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 152 QFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINP--ACKADVRIGIGHC------FWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCc--ccCCCccchhhhH------HHhccchhhHHHHH
Confidence 354557778888 66666666666778999999999999887742 2211 11122222 67899999999999
Q ss_pred HHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh
Q 004922 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (723)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (723)
.++++ +.|... ..+-.|.-.-...-+...+..++..+.+.-. ..+.++...+.|..-+-..+++..+..+...
T Consensus 223 ~ralq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 223 ERALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 99997 666332 1221221111122234555667776666544 3377888888888888889999888887665
Q ss_pred CCC-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 217 VPR-------ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 217 ~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
+-. -...|+.+..+|-..|++++|...|-+..+....--+..+.-+.+.|.+.|+++.+...|+.+.+. .|
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p 373 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LP 373 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Cc
Confidence 421 125578888999999999999999988776432111445667788899999999999999988876 34
Q ss_pred cHHH-HHHHHhhhcC------ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh-hhhcCCccc
Q 004922 290 NIYV-FNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKL 361 (723)
Q Consensus 290 ~~~~-~~~ll~~~~~------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~g~~~~ 361 (723)
|..- ...+-..|++ ..+.|..++....+.- +.|...|-.+...+....-+ .++..|..+.. +...+ -.+
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~-~~i 450 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG-KQI 450 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC-CCC
Confidence 4433 3333333433 2355666666665543 45666776666665554443 34777766653 33344 346
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (723)
.....|.+...+...|+++.|...|...... ...+|. .+-..+...+...++++.|.+++..+.+. .|+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~ 528 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPG 528 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cch
Confidence 7778888888888999999999988887654 122232 23445666777788888999999888876 344
Q ss_pred HH-HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 433 SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 433 ~~-~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
-. .|--+.......+...+|..+++..............+.|... +. ...+. .....+......-..
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~----l~---k~~~~-----~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH----LK---KSEWK-----PAKKKFETILKKTST 596 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH----Hh---hhhhc-----ccccHHHHHHhhhcc
Confidence 33 2333332223346677787777776643322111100000000 00 00000 000001111111122
Q ss_pred CcCHHHHHHHHHHHhh--------------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004922 512 KPTTTTYNILMKACCT--------------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~--------------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 577 (723)
.+|.++.-+|-..|.. ..++|.++|.++.+... -|.+.-|-+.-.++..|++.+|..+|.+..+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3566665555443321 35789999999988643 37777788888999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 004922 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~ 656 (723)
.. -...+|-.+..+|...|++..|+++|+... ...-.-+....+.|-+++.+.|.+.++.++ +-.....-+.-..
T Consensus 676 ~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~---ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 676 TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA---LLKARHLAPSNTS 751 (1018)
T ss_pred Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHhCCccch
Confidence 43 245678889999999999999999999765 445556899999999999999998776553 3233333333334
Q ss_pred HHHHHHH
Q 004922 657 TYLKELI 663 (723)
Q Consensus 657 ~~~~~li 663 (723)
..||..+
T Consensus 752 v~FN~a~ 758 (1018)
T KOG2002|consen 752 VKFNLAL 758 (1018)
T ss_pred HHhHHHH
Confidence 4455443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=7e-16 Score=168.53 Aligned_cols=419 Identities=11% Similarity=-0.014 Sum_probs=227.3
Q ss_pred HHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
....+...|++++|+..|+++++ +.|+.. . +.+.+..+...|++++|++.++..++.. |+....+..++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~----~---~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIE--CKPDPV----Y---YSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCchH----H---HHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 34447789999999999999887 556432 2 3333334455799999999999988755 77777777777
Q ss_pred HHHhcCCChHHHHHHhhhC---CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 199 QLCVNKPDVNLAIRYACIV---PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (723)
.++...|++++|+..+..+ +.. ......++..+.. ..+........+... ++...+..+...+ ...+...
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCc
Confidence 7777777777777655432 111 1111111111111 112222222222111 1111222222211 1111111
Q ss_pred HHHHHHHHHhCCCccc-----HHHHHHHHhh-hcCChHHHHHHHHHHHHcC-C-CcChhhHHHHHHHHHHcCChHHHHHH
Q 004922 275 SRAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-V-MADMASYNILLKACCLAGNTVLAQEI 346 (723)
Q Consensus 275 a~~~~~~m~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~~~~~~A~~~ 346 (723)
...-+....+. .++ .......+.. ..+++++|.+.|+.....+ . +.+...++.+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111100 010 0000000011 1135556666666655543 1 12233455555555566666666666
Q ss_pred HHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 347 YGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 347 ~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
|++... ..|+ ...|..+...+...|++++|...|++.++.... +..+|..+...+...|++++|...|++..
T Consensus 354 ~~kal~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 354 LSKSIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666554 2233 335555555566666666666666665554322 34555555556666666666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (723)
+.. +.+...+..+..++.+.|++++|...|+.
T Consensus 427 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~----------------------------------------------- 458 (615)
T TIGR00990 427 DLD-PDFIFSHIQLGVTQYKEGSIASSMATFRR----------------------------------------------- 458 (615)
T ss_pred HcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------------------------
Confidence 542 22344444555555555555555555544
Q ss_pred ccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--
Q 004922 506 DKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-- 583 (723)
Q Consensus 506 ~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 583 (723)
..+. .+.+...++.+...+...|++++|+..|++..+..-..+.
T Consensus 459 ---------------------------------al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 459 ---------------------------------CKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred ---------------------------------HHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 3332 1234667888888999999999999999998874211111
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 004922 584 ----VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (723)
Q Consensus 584 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~ 650 (723)
..++..+..+...|++++|.+++++.... .| +...+..+...+.+.|++++| +..|++..+.
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eA---i~~~e~A~~l 571 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEA---LKLFERAAEL 571 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHH---HHHHHHHHHH
Confidence 11222233344579999999999998874 45 455788899999999997774 5577776654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1e-15 Score=166.41 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=216.6
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
+...|++++|+.+++..+... |+....+..++.+....|++++|...++.+ |.+..++..+...+...|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 344799999999988888765 777777888888888888999888887774 77778888889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCC
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~ 320 (723)
...|++..+.. +.+...+..+...+...|++++|...++.+......+....+........|++++|...++.+.....
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999988742 23567788888889999999999999988876543322222222222344788888888888776543
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH----HHHHHHHHHHCCCCC
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGVTP 396 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~~~~p 396 (723)
.++...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++ |...|++.....+.
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 334445555567788888999998888888763 23355677778888888888875 78888888876543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+.+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778888888888899999998888888763 33556677777888888888888888877654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.8e-16 Score=170.70 Aligned_cols=330 Identities=13% Similarity=0.031 Sum_probs=247.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-....+..+.+.|++++|+.+++..+.. .|.....+ ..++......|++++|++.|+++.+ ..|+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l------~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~- 110 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLL------RRWVISPLASSQPDAVLQVVNKLLA--VNVCQP- 110 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHH------HHHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh-
Confidence 344556778888899999999999999999 55543332 3334446789999999999999997 567543
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
..+..+.. .+...|++++|+..++++++.. |++...+..++..+...|++++|...++.+ |.+...+..
T Consensus 111 --~a~~~la~---~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 111 --EDVLLVAS---VLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred --HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 23333333 3445899999999999998865 888888999999999999999999887653 555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~ 304 (723)
+. .+...|++++|...++.+.+....++...+..+...+...|++++|+..|+++.+... .+...+..+-.. ..|+
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 43 4788899999999999987754334455556667788899999999999999987642 234444444333 3466
Q ss_pred hHH----HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 305 LKF----TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 305 ~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+++ |...|++..... +.+...+..+...+...|++++|...+++.... .+.+...+..+..++.+.|+++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 664 788999888764 446778888899999999999999999998873 2234456777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+|.+.|+.+...++. +...+..+..++...|+.++|...|++..+.
T Consensus 336 eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999998876432 2233444567788999999999999998876
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.2e-14 Score=132.03 Aligned_cols=439 Identities=14% Similarity=0.171 Sum_probs=288.8
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHH-HHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFV-GLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
+..+|.++++.-+|++|.+.|...+..... .|....+ +.+..++--|. +.|-.|...|... ...|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~----~L~~LV~-~~Ns~~~~~~E~~~Fv~~~~~~E~S--~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQL----ELFRLVT-YYNSSNVPFAEWEEFVGMRNFGEDS--TSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHH----HHHHHHH-hhcCCCCcchhHHHHhhcccccccc--cccc-------
Confidence 457899999999999999987665544222 2222222 22233333222 2344444444322 2222
Q ss_pred hcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
+.| +.|.-+++..|..+.++..+|.++|+-...+.|..+|.+......+.+..++|.+|.+-+-... .+++.+
T Consensus 191 -K~G--~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 191 -KSG--AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred -ccc--cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 233 3455778889999999999999999999999999999998887777899999999987544433 689999
Q ss_pred HHhCCCcccHHHHHHHHhhhc--CCh----HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH-HHHHHHHHH-hh
Q 004922 282 LRSQNVTLNIYVFNSLMNVNA--HDL----KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (723)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~--~~~----~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~-~~ 353 (723)
|....+.||..|+|+++.+.+ |++ ..|.+++.+|++.|++|...+|..+|..+++.++..+ |..+...+. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 999999999999999999855 544 4468999999999999999999999999999988755 333333332 22
Q ss_pred hhcC---CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 354 EAKG---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 354 ~~~g---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
.++. ..+.|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...++.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122345567788888889999999998877665321 2333 23467788888999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcc
Q 004922 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503 (723)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (723)
|.-.-+-|+..+...++.+..-.|.++-.-+++..+...+..... +...++..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~--------~l~eeil~------------------- 476 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS--------DLREEILM------------------- 476 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH--------HHHHHHHH-------------------
Confidence 998888899999999999999999999888888887765531100 00000000
Q ss_pred ccccccCC---CcCHHHHHHHHHHHhhcHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 004922 504 SFDKRFSF---KPTTTTYNILMKACCTDYYRVK-ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG- 578 (723)
Q Consensus 504 ~~~~~~~~---~p~~~~~~~ll~~~~~~~~~a~-~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 578 (723)
.+-.... .|...-+.....-|+-++.++. .--.+|.+..++ ....+...-.+.+.|..++|.++|..+.+.+
T Consensus 477 -~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 477 -LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred -HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 0000011 2222234444443443333222 223344443333 3444555556677777777777777775432
Q ss_pred CCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 579 MSPDVVAYT---TAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 579 ~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
--|-....| -+++.-.+..+...|...++-|...
T Consensus 554 ~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 554 KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 223333333 4445555666777777777777543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5e-13 Score=138.95 Aligned_cols=552 Identities=13% Similarity=0.109 Sum_probs=368.6
Q ss_pred ChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHh
Q 004922 86 RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL 165 (723)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~ 165 (723)
+++.|.+.|...+.. .|.....++....+ ....|+|-.|+.+|..++.. .|.-..+.. +.+. ...
T Consensus 145 ~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i------~ynkkdY~~al~yyk~al~i--np~~~aD~r---Igig--~Cf 209 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQ--SPDNILALLGKARI------AYNKKDYRGALKYYKKALRI--NPACKADVR---IGIG--HCF 209 (1018)
T ss_pred cHHHHHHHHHHHHhh--CCcchHHHHHHHHH------HhccccHHHHHHHHHHHHhc--CcccCCCcc---chhh--hHH
Confidence 369999999999998 67766555554443 56889999999999998863 443222211 1222 234
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCC---hHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD---VNLAIRYACI----VPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
++.|+.+.|+..|.++++.. |..+..+..|+-.-....+ +..+...+.. -+.++.+.+.|...|...|++.
T Consensus 210 ~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 45899999999999999866 7777666666655444443 3455554433 3788899999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH--H--HhhhcCChHHHHHHH
Q 004922 239 SALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS--L--MNVNAHDLKFTLEVY 312 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--l--l~~~~~~~~~a~~~~ 312 (723)
.+..+...+...-.. .-...|..+.++|-..|++++|...|.+..+. .+|.+++.. + +..+.|+++.+...|
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHH
Confidence 999999998874321 12456889999999999999999999888765 344433332 2 334568999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcC----ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAG----NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+.+.+.. +-+..+...|...|...+ ..+.|..++.+.... .+.|...|-.+...+-...-+.. +.+|..
T Consensus 366 Ekv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-----~~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 366 EKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-----TPVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 9998764 445667777777777664 456777777777652 35577788888777766555444 666655
Q ss_pred HH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHhCCHHHHHHH
Q 004922 389 ML----SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNS------QCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 389 m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.. ..+-.+.....|.+.......|.+..|...|...... ...++. .+--.+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 4455577888999999999999999999999988765 122333 2233344556667899999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhh--ccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHK--DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~ 533 (723)
|..+....+. -++....+... ...+. ......+...+..-...|+..++-.-++.--+....|.
T Consensus 519 Yk~Ilkehp~---------YId~ylRl~~ma~~k~~~-----~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 519 YKSILKEHPG---------YIDAYLRLGCMARDKNNL-----YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHHHHHHCch---------hHHHHHHhhHHHHhccCc-----HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 9988865431 11111000000 00000 00000111112222234554444322222122344555
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004922 534 ALMNEMRTV-GLSPNHISWTILIDACGG------------SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600 (723)
Q Consensus 534 ~l~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 600 (723)
+-|..+.+. ...+|.++.-+|...|.. .+..++|+++|.+.+... +.|...-|-+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 544444432 123577766666665532 235678889998888753 236777888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-hhhhhhhccc
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK-AGYKANDTYLKELIEEWCE-GVIQDKNQNQ 678 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~-g~~~~a~~~~ 678 (723)
+|..+|.+..+.. .-+..+|--+.+.|.-.|++.. |+++|+...+ .+..-+..+.+.|-++|.+ |...++.+.+
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~---AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL---AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999998754 3456778888999999998665 5668877765 5556678899999999998 8888888766
Q ss_pred ccch
Q 004922 679 GEVT 682 (723)
Q Consensus 679 ~~~~ 682 (723)
....
T Consensus 740 l~a~ 743 (1018)
T KOG2002|consen 740 LKAR 743 (1018)
T ss_pred HHHH
Confidence 5333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.4e-14 Score=161.14 Aligned_cols=417 Identities=13% Similarity=0.038 Sum_probs=227.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
.....-.+.+..-.|+.++|+.++.++... .|.. ...+..+...+...|++++|.+.|+++++ ..|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 444445566677788888888888888764 2221 12223445557788888888888888886 345432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
... ......+...|++++|+..++++++.. |++.. +..++.++...|++++|+..++.+ |.+..++..
T Consensus 84 --~a~---~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 --DYQ---RGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred --HHH---HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 111 222233445788888888888887754 55555 555566666666666665555442 444445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
+...+...+..+.|+..++.... .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555555555555554432 1210 000011111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHc-CCCcChh-hH----HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHH
Q 004922 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (723)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~ 371 (723)
..+++ +.|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.. .+...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~---~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA---EGQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cCCCCCHH-HHHHHHH
Confidence 00112 4455555555532 1112211 11 1112344556777777777777765 12111221 1122355
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAG-----------CEPN---SQ 434 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~---~~ 434 (723)
.|...|++++|+.+|+++....... .......+..++.+.|++++|...++.+.... -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6777777777777777776543221 12345555566677777777777777776542 1123 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
.+..+...+...|+.++|.++++++....
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------------------------------------------- 389 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA--------------------------------------------------- 389 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 45566667778888888888888876431
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004922 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVC 593 (723)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 593 (723)
+.+...+..+...+...|++++|++.+++..+. .|+ ...+-.....+
T Consensus 390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTA 437 (765)
T ss_pred ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHH
Confidence 123344555566666666677777777666653 344 34444555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
...|++++|.++++++.+ ..|+......+=+
T Consensus 438 l~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 666677777777766665 2454444333333
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=2.3e-14 Score=159.51 Aligned_cols=380 Identities=11% Similarity=-0.053 Sum_probs=277.5
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 63 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
.+.+|.+ ...+..++..+...|++++|+.++++++.. +|...... ..++..+...|++++|+..++++.+.
T Consensus 42 ~~~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 42 RVHMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ------RGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3346666 677999999999999999999999999998 55543332 23444578999999999999999974
Q ss_pred CCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcc
Q 004922 143 GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (723)
Q Consensus 143 ~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (723)
.|+.. . +..+..+ +...|++++|+..++++++.. |++...+..++.++...+..+.|++.++.++..+.
T Consensus 113 --~P~~~---~-~~~la~~---l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 113 --APDKA---N-LLALAYV---YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred --CCCCH---H-HHHHHHH---HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 66543 2 3333333 334899999999999999866 88888888889999999999999999988765321
Q ss_pred --------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCCHH-H----HHHHHHHHHhcCCHHHHHHHHH
Q 004922 223 --------LFCNFVREFG-----KKRDL---VSALRAYDASKKH-LSSPNMY-I----CRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 223 --------~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
....++..+. ..+++ ++|+..++.+.+. ...|+.. . ....+.++...|++++|+..|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1222333332 22234 7788899888854 1223221 1 1111334567799999999999
Q ss_pred HHHhCCCc-cc-HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 281 DLRSQNVT-LN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 281 ~m~~~g~~-~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
.+.+.+.. |+ ...+...+....+++++|+..|+++....... .......+..++...|++++|...++.+.....
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 99988632 33 44445555566799999999999987653111 124456677788999999999999999886210
Q ss_pred c-----C--Ccccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 356 K-----G--VLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 356 ~-----g--~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
. + .-.|+ ...+..+...+...|++++|+++++++....+. +...+..+...+...|++++|++.+++..
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 0 00122 234566778889999999999999999887544 67889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
... +-+...+......+.+.|++++|..+++.+.+...
T Consensus 421 ~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 421 VLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred hhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 863 33456666777788899999999999999886543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.3e-13 Score=148.26 Aligned_cols=469 Identities=10% Similarity=0.013 Sum_probs=302.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+.....-+-...++|+++.|+..|+++++. .|.....+. .++..+...|+.++|+..+++... |+..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~~----p~n~- 100 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQS----SMNI- 100 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhcc----CCCC-
Confidence 333444455677889999999999999998 555321111 333446677999999999999883 2222
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC-CCc--chHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RAD--ILFCNF 227 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~l 227 (723)
....+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.+..+. .++ ..+..+
T Consensus 101 ---~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 101 ---SSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 12222222333444899999999999999866 7777777777888888888888888877752 222 222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (723)
+..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-. +.++-...... +.+.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l---~~~~ 245 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL---ERDA 245 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---HHHH
Confidence 333334556656888888888753 2356677777788888888888877666532 22211111110 0011
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH----HHHHHHHHHHccCCHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF----TYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~----~~~~ll~~~~~~g~~~~a~ 383 (723)
+ -++++.+..++..- . . +---.+.|+.-++.+.... +..++... ...-.+-++...|++.+++
T Consensus 246 ~----a~~vr~a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 246 A----AEQVRMAVLPTRSE-T---E---RFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred H----HHHHhhcccccccc-h---h---hHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1 11121111111100 0 0 0012234444455544321 11222222 2234466788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+.|+.+...+.+....+-.++.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999998876566788899999999999999999999997753 123444467889999999999999999999
Q ss_pred hhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHH---HHHHHHHhhcHHHHHHH
Q 004922 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY---NILMKACCTDYYRVKAL 535 (723)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~a~~l 535 (723)
+..... .....+.+ +. ..-.||-..+ .+...++.++..+|++.
T Consensus 393 ~~~~~p--~~~~~~~~-------------------~~-------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 393 YSEQTP--YQVGVYGL-------------------PG-------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHhcCC--cEEeccCC-------------------CC-------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876321 00000000 00 0013443333 33344566789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004922 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (723)
Q Consensus 536 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 614 (723)
++.+.... +-|......+.+.+...|++.+|+.+++..... .|+ ..+....+.++...|++.+|..+.+.... .
T Consensus 439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~ 513 (822)
T PRK14574 439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--R 513 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 99997753 347788888999999999999999999777664 554 55666777888888999999999988876 3
Q ss_pred CCCHH
Q 004922 615 QPNLV 619 (723)
Q Consensus 615 ~p~~~ 619 (723)
.|+..
T Consensus 514 ~Pe~~ 518 (822)
T PRK14574 514 SPEDI 518 (822)
T ss_pred CCCch
Confidence 56555
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=5.6e-13 Score=145.26 Aligned_cols=425 Identities=11% Similarity=0.042 Sum_probs=306.5
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC--CCcchHHHH--HHHHHhcCCHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCNF--VREFGKKRDLVSAL 241 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~l--~~~~~~~~~~~~A~ 241 (723)
.+.|+++.|+..|++.++.. |........++..+...|+.++|+.+++++- .+...+..+ +..|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999998866 6654333378888888999999999998863 233333334 66888999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g 319 (723)
++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999998643 35677778888999999999999999999877 45555554444444 245555999999999885
Q ss_pred CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH--HHHHHHHH---------ccCC---HHHHHHH
Q 004922 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFA---------DAKW---WQMALKV 385 (723)
Q Consensus 320 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~--~~ll~~~~---------~~g~---~~~a~~~ 385 (723)
+.+...+..++.++.+.|-...|.++..+-+.+ +.+....+ ...+.-.+ ...+ .+.|+.-
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 456778888999999999999999887765432 22221111 01111111 1223 3445555
Q ss_pred HHHHHHC-CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 386 KEDMLSA-GVTPNTI-----TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 386 ~~~m~~~-~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
++.+... +..|... ...-.+-++...|++.++++.++.|...+.+....+-..+.++|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6665542 2223321 223456678899999999999999999887767778999999999999999999999988
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMN 537 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~ 537 (723)
....... ....++......|..++. .++++|..+++
T Consensus 354 ~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 354 YYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred hhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 6532100 001334444567777876 47899999999
Q ss_pred HHHHcCC-----------CCCH--H-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004922 538 EMRTVGL-----------SPNH--I-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 538 ~m~~~~~-----------~p~~--~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (723)
.+.+.-. .|+. . .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987421 1221 1 34456677889999999999999998753 337888889999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 604 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
+.++.... +.| +..+......++...|+++++++ +.+.+..
T Consensus 471 ~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~---~~~~l~~ 512 (822)
T PRK14574 471 QELKAVES--LAPRSLILERAQAETAMALQEWHQMEL---LTDDVIS 512 (822)
T ss_pred HHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHH---HHHHHHh
Confidence 99987765 356 56677777888888888877665 5545544
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=8.2e-14 Score=132.01 Aligned_cols=464 Identities=14% Similarity=0.099 Sum_probs=272.1
Q ss_pred cccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC-
Q 004922 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA- 220 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~- 220 (723)
|.....-.++++|.+++..+.-.....+|+..++-+++....|+.-..-..++..+.+.+.+..|+++++.. |.-
T Consensus 192 ~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 192 PEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred hhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 333334457788888777777788999999999999999988888887788899999999999999998874 331
Q ss_pred ----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 004922 221 ----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--------- 287 (723)
Q Consensus 221 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--------- 287 (723)
....+++.-.+.+.|++++|+..|+...+. .||..+-..|+-++..-|+.++..+.|..|.....
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 145666777788999999999999998874 58877766667677788999999999999986532
Q ss_pred ---cccHHHHHHHHhh-----hc-C---ChHHHHHHHHHHHHcCCCcChh-------------hH--------HHHHHHH
Q 004922 288 ---TLNIYVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMA-------------SY--------NILLKAC 334 (723)
Q Consensus 288 ---~~~~~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~ll~~~ 334 (723)
.|+....+..+.. .. . +.+.++-.--.++.--+.|+-. .+ -.-...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2344444444332 11 1 1111111111111111222210 00 0112457
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS-TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
.+.|+++.|.+++..+.+.. . -..+...-| .++..+-...++..|..+-+..+..+- -+....+.-.+.....|+
T Consensus 430 lk~~d~~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGD 505 (840)
T ss_pred HhccCHHHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCc
Confidence 89999999999998877521 1 011111111 122222223345555555555443221 122222222233334556
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCC
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (723)
+++|.+.+++.+...-......||+=+ .+...|++++|++.|-++...-.. ...........+..++..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~n--n~evl~qianiye~led~-------- 574 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN--NAEVLVQIANIYELLEDP-------- 574 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhCH--------
Confidence 666666665555443222222333322 234455555555555443211000 000000000000000000
Q ss_pred CCCcCCCCccccccccCC-CcCHHHHHHHHHHHhhcH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 004922 494 PNFVPNSHYSSFDKRFSF-KPTTTTYNILMKACCTDY--YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (723)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (723)
...+...++...+ +.|+..++-+...|-+.+ .+|.+.+-+--+. ++-+..|...|...|....-+++|+.+
T Consensus 575 -----aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 575 -----AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred -----HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 0001111222223 445677777777776544 3444443333222 445777888888888888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004922 571 LKIMREDGMSPDVVAYTTAIKVCV-RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (723)
Q Consensus 571 ~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 635 (723)
|++..- +.|+..-|..||..|. +.|++.+|+.+|+...+. +.-|...+..|++.|...|-.+
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 988764 5899999998886554 579999999999988764 6678899999999988877543
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.1e-11 Score=128.26 Aligned_cols=366 Identities=13% Similarity=0.095 Sum_probs=265.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
..-..+..+...|++++|..++...+.. +|..+...-.+ ...|-.+|+.+++...+-.+- .+.|...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL------~~IyEqrGd~eK~l~~~llAA--HL~p~d~--- 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTL------GEIYEQRGDIEKALNFWLLAA--HLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHH------HHHHHHcccHHHHHHHHHHHH--hcCCCCh---
Confidence 3344455666679999999999999999 66655443344 444899999999877654433 4677543
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCc-----ch
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----IL 223 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~ 223 (723)
......+....+.|++++|.-+|.++++.. |++......-...|.+.|+...|...|..+ |+.. ..
T Consensus 208 ---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 208 ---ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 333333334455899999999999999877 888888888899999999999998876663 4322 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-------------
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL------------- 289 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~------------- 289 (723)
-...++.+...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2335677888888899999998877632 22456678899999999999999999988887722222
Q ss_pred --------------cHHHHHHHHhh-hcCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 290 --------------NIYVFNSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 290 --------------~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+...+...+.. ..+..+...-+...+.... ..-+...|.-+..+|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 22222222221 1134444555555555555 334567788899999999999999999999986
Q ss_pred hhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 004922 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML------- 425 (723)
Q Consensus 353 ~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~------- 425 (723)
.. ..-+...|-.+..+|...|.+++|.+.|+..+...+. +...-..|-..+.+.|+.++|.+++..+.
T Consensus 443 ~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 443 RE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred Cc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 21 2335778999999999999999999999999986432 45556677778899999999999999854
Q ss_pred -HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 426 -QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 426 -~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..+..|+........+.+.+.|+.++-.+.-..|..
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334566677777777888899998886666555554
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-12 Score=123.13 Aligned_cols=406 Identities=13% Similarity=0.127 Sum_probs=275.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHH-HHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYM-KSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
.+-++|+.. ...|.+.++.-+|+.|...|...+...-..|... |-...++. .-++-|-.|...|- ....+|.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK--- 191 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc---
Confidence 455566654 4568899999999999999887776665555543 22222222 11233444443331 1112221
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
+.+-|. ++-+.. +.+..+|.++|.++|+--..+.|.+++++.... + .+.+..+||.+|.+-.-.
T Consensus 192 -----~G~vAd-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k--~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 192 -----SGAVAD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAA--K--GKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -----cccHHH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--h--heeeHHhhhhhhhHHHhh--
Confidence 112233 333332 668899999999999999999999999988762 2 467889999998764432
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH-HH
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ----AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR-AF 453 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~ 453 (723)
...+++.+|....+.||..|||+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 337899999999999999999999999999998775 56788999999999999999999999998887755 34
Q ss_pred HHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCC-cCHHHHHHHHHHHhh--cHH
Q 004922 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK-PTTTTYNILMKACCT--DYY 530 (723)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~--~~~ 530 (723)
.++.++...-. ++.. ..+. .|...|...|..|.+ +.+
T Consensus 334 ~~i~dI~N~lt-------------------GK~f---------------------kp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 334 SWINDIQNSLT-------------------GKTF---------------------KPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHhhc-------------------cCcc---------------------cCCCCchhHHHHHHHHHHHHhhhHH
Confidence 44444332110 0000 0122 345566777777653 666
Q ss_pred HHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004922 531 RVKALMNEMRTV----GLSPNH---ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 531 ~a~~l~~~m~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 603 (723)
-|.++..-.... -+.|+. .-|.-+....|.....+.-...++.|.-.-.-|+..+...++.+..-.|.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 777765544421 123332 2456677778888889999999999987777789999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--H-H-------HHHHHHH-------HHHHHHcCCCCCHHHHHHHHHH
Q 004922 604 SLFEEMKHYQIQPNLVTYITLLRARSRYG-SL--H-E-------VQQCLAV-------YQDMWKAGYKANDTYLKELIEE 665 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~--~-~-------a~~a~~~-------~~~m~~~g~~p~~~~~~~li~~ 665 (723)
++|..|+..|..-+...-.-++..+++.. ++ - . ++-|..+ -.+|.+... .....+.+.--
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~L 531 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAIL 531 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHH
Confidence 99999998887766666666666666655 22 1 0 0111111 122333333 45566777777
Q ss_pred HHh-hhhhhhhcccccchHhhhcccCCh
Q 004922 666 WCE-GVIQDKNQNQGEVTLCRRTNSQRP 692 (723)
Q Consensus 666 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 692 (723)
+.+ |..++|.++++-+.....+.+..+
T Consensus 532 l~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 532 LLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred HHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 888 999999999987765555555443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1e-10 Score=121.34 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=221.8
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhc
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK 234 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~ 234 (723)
+..+..+.-.|+.++|..++.++++.. |.....|..|+..|.++|+.+++....-. -|.+...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 333333333599999999999999877 88999999999999999999999886443 377889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc------CChHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFT 308 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~------~~~~~a 308 (723)
|++++|.-.|.+..+..+ ++...+-.-+..|-+.|+...|.+.|.++.....+.|..-+..++.... ++.+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998643 4666666677789999999999999999998754444444444444321 344777
Q ss_pred HHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh----------------------hcC-CccccHH
Q 004922 309 LEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AKG-VLKLDVF 364 (723)
Q Consensus 309 ~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----------------------~~g-~~~~~~~ 364 (723)
.+.++..... +-..+...++.++..+.+...++.|......+.... ..| .+.++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 7777776652 234566788899999999999999988877776510 000 0222222
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
. -.++-++.+.+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 3 233344555555555555555565555 3334567888888999999999999999998887555667788888888
Q ss_pred HHHhCCHHHHHHHHHHhhh
Q 004922 443 CVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~ 461 (723)
|...|..+.|.+.|+.+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 9899999999998888765
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.7e-11 Score=116.49 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHH
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (723)
...+..|+..|+-+++.-+.... -.....++++...+.+.|+|++|+..|+...+ ..|+.. ..+++.+-+++
T Consensus 250 kr~fskaikfyrmaldqvpsink---~~rikil~nigvtfiq~gqy~dainsfdh~m~--~~pn~~---a~~nl~i~~f~ 321 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINK---DMRIKILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFI---AALNLIICAFA 321 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccch---hhHHHHHhhcCeeEEecccchhhHhhHHHHHH--hCccHH---hhhhhhhhhee
Confidence 33444555555544444221111 11244556777777888888888888887776 355432 23344333222
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCC
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPV 188 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~ 188 (723)
-|+.+...+.|.+|+.....+
T Consensus 322 ----i~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 322 ----IGDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred ----cCcHHHHHHHHHHHhcCCCCC
Confidence 477777777777777654333
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=7.2e-09 Score=99.81 Aligned_cols=419 Identities=11% Similarity=0.094 Sum_probs=299.0
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
-.+++++..|..+|++++... ..+...|..-+..-.+...+..|..+++. +|.-+..|...+.+=...|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 344788999999999998755 56777788888888888889999988877 477788888888888889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHc
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (723)
.++|+.-.+ ..|+..+|++.|+.=.+.+.++.|..+|+..+-. .|++.+|--.... ..|....+..+|....+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999876 5799999999999999999999999999998865 5888888777665 447888899999887664
Q ss_pred -CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccCCHHHHHHH--------H
Q 004922 319 -GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKV--------K 386 (723)
Q Consensus 319 -g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~ 386 (723)
|- ..+...+.+....=.++..++.|.-+|+..... ++.+ ...|..+...=-+.|+.....+. |
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 21 112233444434444677888999999888763 2222 33455544444445554333322 3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HHhCCHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLF 456 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll-----~~~---~~~g~~~~a~~l~ 456 (723)
+.++..++ -|-.+|--.++.-...|+.+...++|++.... ++|-.. .|.-.| -+| ....+.+.+.++|
T Consensus 312 E~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44554443 36678888888888899999999999999876 344221 122111 122 2467888888888
Q ss_pred HHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh------cHH
Q 004922 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT------DYY 530 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~------~~~ 530 (723)
+...+. ++....||.-+--.|+. ++.
T Consensus 390 q~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 390 QACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccH
Confidence 877652 34556666665555542 577
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
.|.+++...+ |..|-..+|-..|..=.+.+++|.+.+++++.++.+. -|-.+|.-....=-..|+.+.|..+|.-.+
T Consensus 422 ~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8888877665 4568888888888888888899999999999888542 255677666666667889999999998887
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 004922 611 HYQ-IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (723)
Q Consensus 611 ~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~ 650 (723)
+.. +......|.+.|.-=...|..+.+ ..+++++++.
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~eka---R~LYerlL~r 536 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKA---RALYERLLDR 536 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHH---HHHHHHHHHh
Confidence 532 334566677777776677765554 4477777764
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=3.2e-08 Score=99.25 Aligned_cols=396 Identities=12% Similarity=0.075 Sum_probs=233.3
Q ss_pred HHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004922 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (723)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (723)
..++++.++.- |+++..|-. .....+.+.|.-++.++..--.....|..+|.+..-|+.|.++++...+. ++-
T Consensus 366 ~RVlRKALe~i--P~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC
Confidence 34455555433 555444432 22334444455444443221122333455666777788888888887764 444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCc--Chhh
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA--DMAS 326 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~--~~~~ 326 (723)
+...|.+-...--.+|+.+.+..++++- ...|+..+..-|-.=-..+ +|..-.+..+....+..|+.- -..|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 6666766666666778888777777653 3457666666654443332 256666777777777666543 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (723)
|+.-...|.+.+.++-|..+|....+. .+-+...|......=-..|..++...+|++....-++ ....|-....
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ak 592 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAK 592 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHH
Confidence 777777788888888888888877763 3445566777766666677888888888888766433 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhc
Q 004922 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (723)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (723)
.+...|++..|..++....+.. +.+..+|-..+..-..+..++.|..+|.+....
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~------------------------ 647 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI------------------------ 647 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------------------------
Confidence 7777788888888888877764 336667777777777888888888888766542
Q ss_pred cccccCCCCCcCCCCccccccccCCCcCHHHH--HHHHHHHhhcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC
Q 004922 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY--NILMKACCTDYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGN 563 (723)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 563 (723)
.|+...| ++-+.-|..+.++|.+++++..+. -|+ ...|-.+...+-..++
T Consensus 648 -------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 648 -------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred -------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 3333333 222333444556666666555553 222 2345555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004922 564 VEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 638 (723)
++.|...|..=.+. -|+ +..|-.+.+.=-+.|.+-+|..++++..-.+ .-|...|-..|+.=.|.|+.+.|+
T Consensus 701 ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 55555555443332 232 3344444444444555556666665554322 224555555555555666555443
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=1.8e-08 Score=100.95 Aligned_cols=486 Identities=13% Similarity=0.043 Sum_probs=289.4
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
.-.+++..|.+ +..|-..+.. ..+...-..+++++++. .|+....+-. .......++|.-++.+
T Consensus 338 vA~Avr~~P~S-v~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKa----------AVelE~~~darilL~r 401 (913)
T KOG0495|consen 338 VANAVRFLPTS-VRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKA----------AVELEEPEDARILLER 401 (913)
T ss_pred HHHHHHhCCCC-hhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHH----------HHhccChHHHHHHHHH
Confidence 44456667777 5554433322 12334445666777777 6665443222 2344556667777777
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (723)
+.+ .-|. . +..+.++.+..-|+.|..+++++.+.= |.+...|....+.-...|+.+...++.+..
T Consensus 402 Ave--ccp~------s----~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 402 AVE--CCPQ------S----MDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHH--hccc------h----HHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 776 3441 2 222333444677788888888776633 667777777777777777777777665552
Q ss_pred --------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 218 --------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 218 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
.-+...|..=...+-+.|..--+..+......-|+.- -..+|+.-...|.+.+.++-|..+|....+.-
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf- 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF- 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-
Confidence 1233455555666666777777777777766666543 24567777777777777777777777766541
Q ss_pred cccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 288 ~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
+-+...|...... .-|..+.-..+|++....- +.....|-.....+-..|+...|..++..+-+. .+.+...
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-----~pnseei 620 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-----NPNSEEI 620 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CCCcHHH
Confidence 2334445444433 2256666667777766542 334445555556666777777777777777652 2234556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACV 444 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 444 (723)
|.+-+.....+..++.|..+|.+.... .|+...|.--+....-.++.++|.+++++.++. -|+ ...|-.+-+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 777777777777777777777777654 455566666666666667777777777777665 333 335666666777
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
+.++++.|.+.|..-.+ ..|+..-+..++.-
T Consensus 697 ~~~~ie~aR~aY~~G~k-------------------------------------------------~cP~~ipLWllLak 727 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTK-------------------------------------------------KCPNSIPLWLLLAK 727 (913)
T ss_pred HHHHHHHHHHHHHhccc-------------------------------------------------cCCCCchHHHHHHH
Confidence 77777777777754322 23444444443333
Q ss_pred Hh---hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-------------------
Q 004922 525 CC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----G------------------- 578 (723)
Q Consensus 525 ~~---~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g------------------- 578 (723)
+- +++-+|..+++.....+. -+...|-..|.+-.+.|+.+.|..++.+.... |
T Consensus 728 leEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH
Confidence 32 245566666666665543 25556666666666777777776666655542 0
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004922 579 ------MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (723)
Q Consensus 579 ------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 636 (723)
+.-|....-.+...|....++++|.+.|.+.++.+ .-+-.+|.-+...+.++|.-+.
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHH
Confidence 11244444455555666666667777776666532 1234566666666666665443
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=8.5e-11 Score=121.33 Aligned_cols=284 Identities=10% Similarity=-0.068 Sum_probs=211.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcc-hHHHHHHHHHhcCCHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI-LFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~A~~ 242 (723)
.|+++.|.+.+.+..+.. |+....+...+++..+.|+++.|.+++..+ |.+.. +.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877654 555555666778888999999999998884 44432 34446888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC-----ChHHHHHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (723)
.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.++.+..........+..+ ..+...+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999864 236778999999999999999999999999998754333221111122211 11222334444444
Q ss_pred cCC---CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH---HHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 318 LGV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 318 ~g~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
... +.++..+..+...+...|+.++|.++++...+ ..||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 321 23788888899999999999999999999987 3345442 12222233456788899999988887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 392 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6332 44 566788999999999999999999644444479999999999999999999999999987543
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=8.1e-08 Score=96.30 Aligned_cols=450 Identities=13% Similarity=0.131 Sum_probs=262.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+..|....+.+.++|++..-...|++++.. -|..- + ..++.-.+.-....|-++.++.+|++-++ +.|...
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--Lpvtq-H---~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~~- 172 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQ-H---DRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEAR- 172 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHh-h---ccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHHH-
Confidence 445666778888899999999999988877 33221 0 01111112223466777889999999887 566431
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCC-----CCcccccHHHHHHHHhcCCChHHHHHH-------hhhCC
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-----PVKELDEEFRIVQLCVNKPDVNLAIRY-------ACIVP 218 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~ 218 (723)
...+..|.. .+++++|-+.+...+.... .+.+...|..+.....+..+.-....+ ...++
T Consensus 173 -eeyie~L~~-------~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 173 -EEYIEYLAK-------SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred -HHHHHHHHh-------ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 122333332 7999999988887764321 144556666666665554433222211 11122
Q ss_pred CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 004922 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (723)
Q Consensus 219 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a 275 (723)
+. ...|++|.+.|.+.|.++.|..+|++..+.- .++.-+..+-++|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 22 3779999999999999999999999977642 23334444444443221 12223
Q ss_pred HHHHHHHHhCC-----------CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcC------hhhHHHHHHHHHHcC
Q 004922 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (723)
Q Consensus 276 ~~~~~~m~~~g-----------~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~ 338 (723)
..-|+.+...+ -+-++..|..-+..+.++..+-...|.+..+.- .|- ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcC
Confidence 33444443332 123455666666666677777788888876641 222 235777888899999
Q ss_pred ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 004922 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----------------NTITW 401 (723)
Q Consensus 339 ~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----------------~~~~~ 401 (723)
+++.|..+|++..+..-.+ +.-=..+|......=.+..+++.|+++.+......-.| +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999887521000 11112345555555556777888888777665321111 22345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhh
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
...++.-...|-++....+++++.+..+.....+.|-. .-+....-++++.+.|++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA-mfLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA-MFLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 55566666677778888888888776543222222221 1223445567777777643211
Q ss_pred hhhhccccccCCCCCcCCCCccccccccCCCcCH-HHHHHHHHHHh----h-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC----T-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (723)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~----~-~~~~a~~l~~~m~~~~~~p~~~~~~~li 555 (723)
+. -|+. ..|+..+.-+. + .++.|..+|++..+ |++|...-+-.|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 01 2332 34565555543 2 68999999999999 6766544222222
Q ss_pred --HHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 004922 556 --DACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIK 591 (723)
Q Consensus 556 --~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~ 591 (723)
..=-+.|-...|+.++++.... +++. ...||..|.
T Consensus 592 YA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 2223458888888888886542 3332 234555553
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=1.6e-09 Score=111.16 Aligned_cols=285 Identities=12% Similarity=0.059 Sum_probs=196.8
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHH-HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH--HHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNIL-LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS--TIVK 371 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~--~ll~ 371 (723)
..++....|+++.|.+.+....+.. +++..+-.+ .....+.|+++.|.+.+.++.+ ..|+...+. ....
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE------LADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHH
Confidence 3444455678888887776655432 233333333 3444788999999999998876 456654333 3356
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACV 444 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~ 444 (723)
.+...|+++.|.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999887644 67788888999999999999999999999876443221 2223333333
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
...+.+...++++.+... .+.+......+..+
T Consensus 241 ~~~~~~~l~~~w~~lp~~------------------------------------------------~~~~~~~~~~~A~~ 272 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK------------------------------------------------TRHQVALQVAMAEH 272 (398)
T ss_pred HhcCHHHHHHHHHhCCHH------------------------------------------------HhCCHHHHHHHHHH
Confidence 334445555555544322 13344555555555
Q ss_pred Hh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004922 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQ 601 (723)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 601 (723)
+. ++.++|..++.+..+. +|+.... ++.+....++.+++.+..++..+. .|+ ...+.++...|.+.|++++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 54 4788899988888774 4454322 344445668999999999988875 454 5567788899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m 647 (723)
|.+.|+.+.+ ..|+..++..+...+.+.|+.+++.+ ++++-
T Consensus 347 A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~---~~~~~ 387 (398)
T PRK10747 347 ASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAA---MRRDG 387 (398)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHH
Confidence 9999999987 47999999999999999999887654 55543
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=5.5e-10 Score=114.66 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=65.7
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (723)
++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++
T Consensus 308 ~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555555555555542 235667888899999999999999999999984 799999999999999999999999999
Q ss_pred HHHHH
Q 004922 607 EEMKH 611 (723)
Q Consensus 607 ~~m~~ 611 (723)
++-..
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 97753
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=5.8e-11 Score=119.32 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=167.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--cccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
=+..+|...|..+..+ +.-+.++...+..+|...+++++|.++|+.+.+... .-+..+|.+.|.-..+.++. ..+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L--s~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL--SYL 409 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH--HHH
Confidence 3578999999996654 323457888899999999999999999999987632 24577788877654443332 222
Q ss_pred -HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 313 -KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 313 -~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+..+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2223322 45789999999999999999999999999988 455 77899999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..... +--+|.-+...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|++++++...
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 64322 33455567788999999999999999998764 44667777888888899999999999987654
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6e-10 Score=102.03 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc--------chHHHHHHHHHhcCCHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~ 239 (723)
+...++|+++|-+|.+.. |...+....++..|.+.|..+.|+++++.+..++ .+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 488899999999999855 8888999999999999999999999998863332 445568888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHhhh--cCChHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYK 313 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~--~~~~~~a~~~~~ 313 (723)
|..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.|-.+.. ..|.-+-... ..+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 23457888999999999999999999999887655432 3344433322 258889999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
+..+.+ +..+..--.+.+.+...|++..|.+.++.+.+. .|+. .+...|..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 988765 234444445678899999999999999999872 3443 4678899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHhhhhhcc
Q 004922 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (723)
Q Consensus 392 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~l~~~~~~~~~~ 465 (723)
....++ .-..+-.......-.+.|..++.+-.+. +|+...+..+|+.... -|...+...++++|......
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 644433 3344444444555567777777666665 8999999999987654 34567777888888766543
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.3e-09 Score=103.72 Aligned_cols=359 Identities=11% Similarity=0.009 Sum_probs=208.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..+....+.+-++|+|++|+..|.+++..+++ |..| .+...+|...|+|+++++.-...++ +.|+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY---------sNraAcY~~lgd~~~Vied~TkALE--l~P~Y-- 182 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY---------SNRAACYESLGDWEKVIEDCTKALE--LNPDY-- 182 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh---------hhHHHHHHHHhhHHHHHHHHHHHhh--cCcHH--
Confidence 34455667788899999999999999999765 5444 3445558899999999999988887 67743
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.-.|.+-+.+.-..|++++|+.=+.-..-.+...+. .....+-+.+...++ ..+.+-+..-........+.+..
T Consensus 183 ----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 183 ----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred ----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHH
Confidence 234555444455567777776533322211111111 001111111111111 11122222100001111122222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC-Ccc-----c--------HHHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQN-VTL-----N--------IYVFN 295 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g-~~~-----~--------~~~~~ 295 (723)
|...=..+-- ..+...+.+.|...-..+-..+... ..+..|.+.+.+-.... ..+ | ...+.
T Consensus 257 yf~sF~~~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 257 YFGSFHADPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred HHhhcccccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 2211000000 0000000000111111111111110 12333333332211100 000 1 11222
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
..+....|+...+.+-|+..+..... +...|..+..+|...++.++....|....++ -+-|..+|..-...+.-
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHRGQMRFL 406 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhHHHHHHH
Confidence 33334568888899999999887533 3333777888999999999999999999874 23455677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.+++++|..=|++.....+. +...|..+.-+..+.+++++++..|++.++. ++-.+..|+.....+.-.++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 89999999999999887654 6677777777777889999999999999886 466778899999999999999999999
Q ss_pred HHHhhh
Q 004922 456 FRSWTL 461 (723)
Q Consensus 456 ~~~~~~ 461 (723)
|+....
T Consensus 485 YD~ai~ 490 (606)
T KOG0547|consen 485 YDKAIE 490 (606)
T ss_pred HHHHHh
Confidence 987765
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.3e-09 Score=99.66 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=204.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCCHHHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~ 244 (723)
+.|....|++.|...+-.- |.....|..+...+. +.+.+..+....|.+...+. -+..+|....+.++++.-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888776544 655555655554442 33333333333444322222 2456677777889999888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc
Q 004922 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++.+....-.. ..+.+-...=-+-
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--s~LA~~v~~idKy 328 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--SYLAQNVSNIDKY 328 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH--HHHHHHHHHhccC
Confidence 88888888655555555555566778999999999999987321 3677888887765532221 1121111110134
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.+.|+..+.+-|.-.++.++|...|+...++ -+.....|+.+.+-|....+...|.+-|+..++..+. |-..|.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL-----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc-----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHh
Confidence 5667888888888999999999999999884 2234567999999999999999999999999987654 888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+.++|.-.+-..-|+-+|++..+.. +-|...|.+|.++|.+.++.++|+..|.+...-
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999998864 558889999999999999999999999876643
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.5e-12 Score=127.65 Aligned_cols=252 Identities=17% Similarity=0.132 Sum_probs=98.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (723)
..|++++|++++++......+|++...|..++...... ++++.|+..++.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~------------------------------~~~~~A~~ay~~ 69 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL------------------------------GDYDEAIEAYEK 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc------------------------------cccccccccccc
Confidence 36888888888755443332344444444444444444 445555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcC-CCcC
Q 004922 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG-VMAD 323 (723)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g-~~~~ 323 (723)
+...+.. +...+..++.. ...+++++|.+++....+.. ++...+...+.. ..++++.+.++++.+.... .+.+
T Consensus 70 l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 70 LLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred ccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 4443221 23334444443 34455555555544443321 222223333332 1244555555555543321 2456
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
...|..+...+.+.|+.++|.+.+++... ..| |....+.++..+...|+.+++..+++...... +.|...+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALE------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 77788888888999999999999999887 345 46678888888999999999888888877654 34556778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
.+..+|...|+.++|+.+|++..+.. +.|+.....+.+++.+.|+.++|.++.++..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 88889999999999999999988763 5578888888899999999999998887654
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=6.3e-10 Score=114.90 Aligned_cols=82 Identities=11% Similarity=-0.015 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004922 528 DYYRVKALMNEMRTVGLSPNH--ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (723)
+.+.+.+.++...+.. +-|. ....++.+.|.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555555431 1233 455677788888888888888888544433467877777888888888888888888
Q ss_pred HHHHH
Q 004922 606 FEEMK 610 (723)
Q Consensus 606 ~~~m~ 610 (723)
|++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 87653
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=2.8e-12 Score=125.65 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh-hcC
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~ 303 (723)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 45667778888888888886544433 2234555666666677778888888888888776432 33444444443 346
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+++.|.+++....+. .+++..+..++..+...++++++.++++.+.. ....+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE---LPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777665543 24555566677777777777777777777654 2213456666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+.+++.++..+. |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|...|++..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 777777766433 46666777777777777777777777666553 3444556667777777777777777776644
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.4e-09 Score=100.05 Aligned_cols=329 Identities=12% Similarity=0.043 Sum_probs=186.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHh-----------------------HHHhhhccCccchHHH
Q 004922 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-----------------------GIVKSIREGRIDCVVG 134 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------------~~~~~~~~g~~~~A~~ 134 (723)
.-.+.+.|....|+..+...+.. -|-.|..++.+.-+.. +..++....+.+++..
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777777777776655 5666666555433311 1111222234444444
Q ss_pred HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCC-CCcccccHHHHHHHHhcCCChH-HHHH
Q 004922 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-PVKELDEEFRIVQLCVNKPDVN-LAIR 212 (723)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~A~~ 212 (723)
-++.....|...+. .+-..+ +...-...++++|+.+|+.+.+... +.++..+++.++-+.....++. .|..
T Consensus 249 k~e~l~~~gf~~~~-----~i~~~~--A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 249 KKERLSSVGFPNSM-----YIKTQI--AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHhccCCccH-----HHHHHH--HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44444443332211 111111 1112235666666666666665431 1234444444444333322222 3333
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH
Q 004922 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (723)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 292 (723)
++..-+-.+++.+.+...|.-.++.++|+..|....+.+. ....+|+.+.+-|...++...|++-|+..++-
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------- 393 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------- 393 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-------
Confidence 3333333345555555566666666666666666555321 12344555555566555555555555555443
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
. +.|-..|-.|..+|.-.+...-|+-.|++.... -+.|...|.+|..+
T Consensus 394 --------------------------~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 394 --------------------------N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGEC 441 (559)
T ss_pred --------------------------C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHH
Confidence 2 456677777888888888888888888888763 34567788888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHHh
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EP-NSQCCNILLQACVEA 446 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~ 446 (723)
|.+.++.++|++.|......|-. +...+..+...|-+.++.++|...|.+..+. |. .| ......-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 88888888888888888876633 5577888888888888888888888776552 32 22 112222234455566
Q ss_pred CCHHHHHHHH
Q 004922 447 CQFDRAFRLF 456 (723)
Q Consensus 447 g~~~~a~~l~ 456 (723)
+++++|....
T Consensus 521 ~~~~~As~Ya 530 (559)
T KOG1155|consen 521 KDFDEASYYA 530 (559)
T ss_pred cchHHHHHHH
Confidence 7777765544
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8.3e-09 Score=99.92 Aligned_cols=407 Identities=12% Similarity=0.039 Sum_probs=231.1
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
..-+.+.|+|++|+..|.++++ +.|+.. ..|+..... +...|+|++.++--.+.++.. |+-+-.+..-.+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~--l~p~ep---iFYsNraAc---Y~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIE--LCPDEP---IFYSNRAAC---YESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHh--cCCCCc---hhhhhHHHH---HHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 3346799999999999999997 677642 233333332 334799999998888887755 777777777778
Q ss_pred HHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHH---------HHhcCC--CCCHHHHHHHHHHHHh
Q 004922 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA---------SKKHLS--SPNMYICRTIIDVCGI 268 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------~~~~~~--~~~~~~~~~l~~~~~~ 268 (723)
++...|+.++|..- .+..++...+....-.--+.++++. +.+.+. -|+....++....+..
T Consensus 192 A~E~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 192 AHEQLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHhhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 88888888877642 2223333333333222223333322 111221 1333333332222211
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC---ChHHHHHHHHHHHHc---CCCc---C------hhhHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL---GVMA---D------MASYNILLKA 333 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~---g~~~---~------~~~~~~ll~~ 333 (723)
. + ...+...+-+-|...-..+=..+.+ .+..+.+.+.+-... .... | ..+.......
T Consensus 264 ~--~------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 D--P------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c--c------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 0 0000000000111111111111111 222222222211110 0001 1 1122222223
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+.-.|+.-.|.+-|+....+. +.+...|--+..+|....+.++..+.|++..+.++. +..+|..-...+.-.++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 445678888888888888731 223333777777788889999999999988887655 67777777777777888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCC
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (723)
+++|..-|++..... +-+...|-.+.-+..+.+.+++++..|++..+.-
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------------------------------ 458 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------------------------------ 458 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------------------
Confidence 999999888887653 3345556666666667888888888888766431
Q ss_pred CCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHcCC
Q 004922 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN---------HISWTILIDACGGSG 562 (723)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~---------~~~~~~li~~~~~~g 562 (723)
+.-...|+.....+. +++++|.+.|+..++. .|+ +.+--.++..-. .+
T Consensus 459 ------------------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qw-k~ 517 (606)
T KOG0547|consen 459 ------------------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQW-KE 517 (606)
T ss_pred ------------------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhch-hh
Confidence 222334444444444 4678888888877763 232 111122222112 27
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
++..|..++++.++...+ ....|..|...-.+.|++++|+++|++...
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888888864321 345678888888888888888888887653
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2e-10 Score=115.54 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=203.0
Q ss_pred cCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC-CCCcccccHHHHHHHHhcC
Q 004922 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNK 204 (723)
Q Consensus 126 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 204 (723)
+-+..+|+..|..+.+. .++ +.-.+.++..++-+.+++++|.++|+.+.+.. ...++++.|+.++.-+.+.
T Consensus 332 ~y~~~~A~~~~~klp~h--~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh
Confidence 34456677777663331 221 11234444444555677777777777766543 2345556666555544332
Q ss_pred CCh-HHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 205 PDV-NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 205 ~~~-~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
-.. -.|..+.+..|..+.+|+.+...|.-+++.+.|++.|++..+. .| ..++|+.+..-+.....++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 222 2455566667888999999999999999999999999999883 45 6889999999999999999999999987
Q ss_pred HhCCCcccHHHHHHHHhh---h--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 283 RSQNVTLNIYVFNSLMNV---N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
+. .|...||+.--. + .++++.|+-.|+.....+ +-+.+....+...+.+.|+.++|+++|++...+.
T Consensus 482 l~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--- 553 (638)
T KOG1126|consen 482 LG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--- 553 (638)
T ss_pred hc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---
Confidence 64 466777765442 3 368888998888888765 4466677778888889999999999999988752
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
+.|...--..+..+...+++++|+..++++++.-+. +...|..+...|.+.|+.+.|+.-|..+.+..
T Consensus 554 --~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 554 --PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred --CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 334455555666778889999999999999886322 45677788889999999999998888887653
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=8.7e-09 Score=106.77 Aligned_cols=528 Identities=12% Similarity=0.100 Sum_probs=272.4
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
...|+. .+|.+++..|+..|+.+.|- +|.-|.......+ -+.++.++......++.+.+.
T Consensus 20 gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 20 GILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred cCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC----------
Confidence 344544 89999999999999999998 7777755532211 233344555566666666554
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHH---HHHHHHHHHh----cC-------------CCCcccccHHHHHHHHhc
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEM---FVGLMEVLEE----FR-------------LPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~---A~~~~~~~~~----~~-------------~~~~~~~~~~~l~~~~~~ 203 (723)
.| ...++..|.+++.. .|+..- ..+.++.+.. .| ..|........++....-
T Consensus 80 -ep----~aDtyt~Ll~ayr~---hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -EP----LADTYTNLLKAYRI---HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -CC----chhHHHHHHHHHHh---ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 22 22455566665555 555443 2222222211 11 112222222334444555
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 204 ~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
.|-++.+.+....+|.....-.... +.+.. .+....++.+......-.|+..+|.+++..-...|+.+.|..++.+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 6777777777777765432211111 12221 2333444444433321248999999999999999999999999999
Q ss_pred HHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc
Q 004922 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (723)
Q Consensus 282 m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~ 361 (723)
|++.|++.+.+.|..|+.+ .++...+..++.-|...|+.|+..|+...+-.+..+|....+.+..+.- .-.
T Consensus 230 mke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--------hg~ 300 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--------HGF 300 (1088)
T ss_pred HHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--------hhh
Confidence 9999999999888888877 7788889999999999999999999998888887766533222211100 001
Q ss_pred cHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCH
Q 004922 362 DVFTYSTIVKVFADAKWW-----QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE-PNS 433 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~ 433 (723)
+...+..+.++.....+. .-....+.+..-.|+......|...+. ....|+-++..++...|..-- .. .++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 122233333332111111 112222233222343333333433222 233566666666666654321 11 133
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCC-chhhhhhhhhhccccccCCCCCcCCCCccccccccC--
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG-NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-- 510 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 510 (723)
..|..++.-|.+.-+..-...++. ...+.....+..... ..+.+... -++........+..........-.+
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~l---rkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENL---RKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHh---CcchHHHHHhhhhHHHHhcccccchhh
Confidence 344444444433221111111111 000000000000000 00000000 0000000000000000000000000
Q ss_pred CCcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 004922 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPDVVAY 586 (723)
Q Consensus 511 ~~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~ 586 (723)
..+--..-+.++..|++ +..+++..-+.....-+ ...|..||.-++.....+.|..+.++.... .+..|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 01112233445555554 33344433322222111 156788888888888888888888887642 233455567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQ 639 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~ 639 (723)
..+.+.+.+.+....+..++++|.+.- .+| ...++--++...+..|..+..++
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 788888888888888888888887521 122 24556666667777777666555
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.8e-12 Score=87.21 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (723)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 630 (723)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=4.5e-09 Score=99.58 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=97.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
|.++.+.....+.|.+.|++.....++..+.+.|.-.+ ..+|+.+++-....+..+.-...++..... .+-+
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~ 262 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRND 262 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcC
Confidence 44455555556666666666666666666665554322 234555555444444444433444444322 1111
Q ss_pred HHHHHHHHh--hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHH
Q 004922 291 IYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (723)
Q Consensus 291 ~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (723)
...-.++.. ..+|+.++|.++..+..+.+..|+ -..+-.+.+-++...-.+..++-.+. .+-+...+.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~t 333 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLST 333 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHH
Confidence 222222221 234556666666666555544333 11112233444444444444433321 2233345566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666655443 45666666666666666666666666665543
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=7.2e-09 Score=95.11 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHH
Q 004922 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164 (723)
Q Consensus 85 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (723)
.+.+.|..+|-.+++. +|+.+...+.++-+ |.+.|..+.|+.+.+.+.+ .|+.. +....-.+-....-
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnL------fRsRGEvDRAIRiHQ~L~~---spdlT-~~qr~lAl~qL~~D 116 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNL------FRSRGEVDRAIRIHQTLLE---SPDLT-FEQRLLALQQLGRD 116 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHH------HHhcchHHHHHHHHHHHhc---CCCCc-hHHHHHHHHHHHHH
Confidence 4556666666666665 66666665555555 6666777777776666664 33221 22222233333333
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (723)
+...|-+|.|+.+|..+.+.+.. ...+...|+..|-..++|++|+++-
T Consensus 117 ym~aGl~DRAE~~f~~L~de~ef--------------------------------a~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEF--------------------------------AEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhh--------------------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44456666666666655543311 1244555667777777777777777
Q ss_pred HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH---hhhcCChHHHHHHHHHHHH
Q 004922 245 DASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM---NVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 245 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~~~~a~~~~~~m~~ 317 (723)
.++.+.+..+. ...|..+...+....+++.|..++.+..+.. |...--+.++ ..-.|+++.|.+.++...+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 76666544332 2235555555666667777777777666542 2211111111 1233677777777777777
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.+..--+.+...|..+|...|+.++....+..+.+ ..+....-..+...-....-.+.|...+.+-+.. +|+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~------~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt 314 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME------TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPT 314 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCc
Confidence 65444566778888999999999999988888776 3445545455544444444455666665555544 689
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004922 398 TITWSSLINACANA---GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 398 ~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 427 (723)
...++.+|..-... |...+-+.+++.|...
T Consensus 315 ~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 315 MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 99999999876543 3455566666666654
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.3e-06 Score=84.70 Aligned_cols=473 Identities=10% Similarity=0.085 Sum_probs=321.4
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
-..++++..|..+|++++... . ..+.+.++-+..-.++..+..|..++++++..- |.....|...+..-.
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~------r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--Y------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEE 152 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--c------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence 346888899999999999732 1 223334443333445788999999999988744 666677777777777
Q ss_pred cCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
..|++..|.++|..- .++..+|.+.+..=.+-+.++.|..+|+...- +.|++..|-.....=.++|....|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 889999999999873 56679999999999999999999999999886 5699999999998888999999999999
Q ss_pred HHHHhC-CCc-ccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChHHHHHH-------
Q 004922 280 EDLRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI------- 346 (723)
Q Consensus 280 ~~m~~~-g~~-~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~------- 346 (723)
+...+. |-. .+...++++... .++.++.|.-+|+-..+.- +.+ ...|..+...=-+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988764 211 223334444332 2357788888888877652 222 33444444443445554333322
Q ss_pred -HHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCCHH
Q 004922 347 -YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI-------TWSSLINAC---ANAGLVE 415 (723)
Q Consensus 347 -~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~---~~~g~~~ 415 (723)
|+.+.. + -+.|..+|--.+..--..|+.+...++|+..... ++|-.. .|-.+=-++ ....+++
T Consensus 310 qYE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 310 QYEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred HHHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222 1 2457778888888888889999999999999865 344211 222221122 2467899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcccccc
Q 004922 416 QAMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (723)
.+.++++..++. ++....||..+--.|+ +..++..|.+++-...
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------------------------------- 431 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------------------------------- 431 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-------------------------------
Confidence 999999998884 4556667666544443 5678888888876543
Q ss_pred CCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 004922 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQ 569 (723)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 569 (723)
|..|...+|-..|..-. ++++.+..+++...+.+.. |..+|.-....=...|+.+.|..
T Consensus 432 ------------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 432 ------------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred ------------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHH
Confidence 34677777777666543 5899999999999996543 67788888888888999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChH-----------
Q 004922 570 ILKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS--RYGSLH----------- 635 (723)
Q Consensus 570 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~----------- 635 (723)
+|+-.+... +.-....|-+.|+-=...|.+++|..+++++.+. .+-...|-++..-=. ..|+-+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~ 570 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDE 570 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchh
Confidence 999998732 1123446667777667799999999999999864 333335554433222 222222
Q ss_pred HHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHh
Q 004922 636 EVQQCLAVYQDMWKA--GYKANDTYLKELIEEWCE 668 (723)
Q Consensus 636 ~a~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~ 668 (723)
....|..+|++.... ...| ..-=-.|++++..
T Consensus 571 ~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 571 NIKRARKIFERANTYLKESTP-KEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 345566677766531 1122 3333455666543
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=7.5e-12 Score=85.14 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (723)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999974
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=2.7e-07 Score=87.77 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=205.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
..+-..+++...|++..|++...+-.+.+ +.....|..-..+....|+.+.+-.++.++.+.. | .++...+-+..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltra 160 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHH
Confidence 34455667777899999999998877766 2234445555677778899999999999988721 1 34556777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH
Q 004922 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQAC 443 (723)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~ 443 (723)
......|+++.|..-++++...+.. +........++|.+.|++.....++..|.+.|.-.+.. +|..+++-.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988765 67778899999999999999999999999988655543 344455443
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
...+..+.-...|+..... .+.++..-.+++.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~ 271 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAE 271 (400)
T ss_pred hccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHH
Confidence 3333333323333332211 1222333333333
Q ss_pred HH--hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 004922 524 AC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLK 600 (723)
Q Consensus 524 ~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 600 (723)
-+ +++.++|.++..+..+.+..|+ -...-.+.+-++...-++..++-.+. +- ++-.+.+|...|.+++.+.
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHH
Confidence 33 3577889998888888877666 22234456777777777777665543 33 3467888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004922 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (723)
Q Consensus 601 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 639 (723)
+|.+.|+...+ ..|+..+|+-+-.++.+.|++.++.+
T Consensus 346 kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 346 KASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHH
Confidence 99999997776 57999999999999999999888766
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=8.3e-10 Score=114.11 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 625 (723)
|+..+|.++++.-...|+++.|..++.+|.+.|+..+..-|..|+-+ .|+..-+..++.-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 55555555555555555555555555555555555555555555544 455555555555555555555555555555
Q ss_pred HHHHhcCChHHH---------------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh
Q 004922 626 RARSRYGSLHEV---------------------------------QQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQ 672 (723)
Q Consensus 626 ~~~~~~g~~~~a---------------------------------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~~ 672 (723)
-.+...|..... .-.+..+.+..=.|+.....+|...++..-.|.-+
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 444442221110 00111122222245555555666655555556666
Q ss_pred hhhcccccchHhhhcccC
Q 004922 673 DKNQNQGEVTLCRRTNSQ 690 (723)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~ 690 (723)
+-.++.+.+..+....++
T Consensus 359 ~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 359 EVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hHHHHHhhhcCCccccCc
Confidence 666666666555544444
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.7e-07 Score=90.58 Aligned_cols=506 Identities=7% Similarity=-0.025 Sum_probs=302.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-+..+.+-+..+.++.-|+-+.++....+.+|..... +...+.-.|+++.|..++..-.-.+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~---------~aq~l~~~~~y~ra~~lit~~~le~~------ 80 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW---------LAQVLYLGRQYERAAHLITTYKLEKR------ 80 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH---------HHHHHHhhhHHHHHHHHHHHhhhhhh------
Confidence 566777888888899999999999999998878876432 23336778888888877754321111
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC--cchHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILFCNFV 228 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~l~ 228 (723)
+......+... +....++++|..++..... ...+..+...-. ...-..+.+. +..+.+ ...+..-.
T Consensus 81 d~~cryL~~~~---l~~lk~~~~al~vl~~~~~----~~~~f~yy~~~~--~~~l~~n~~~---~~~~~~~essic~lRg 148 (611)
T KOG1173|consen 81 DIACRYLAAKC---LVKLKEWDQALLVLGRGHV----ETNPFSYYEKDA--ANTLELNSAG---EDLMINLESSICYLRG 148 (611)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHhcccch----hhcchhhcchhh--hceeccCccc---ccccccchhceeeeee
Confidence 11122233332 3336788888887763210 000000000000 0000000000 000111 12222234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCcccHHHHHHHHhhhc-CCh
Q 004922 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNA-HDL 305 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~-~~~ 305 (723)
..|....+.++|...|.+... .|...+.++...-... =..++..++|+.+.-. -...+......+..... +..
T Consensus 149 k~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~ 224 (611)
T KOG1173|consen 149 KVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNR 224 (611)
T ss_pred ehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhc
Confidence 556677788888888888775 4555555444322211 1122333333321111 11123333333333211 110
Q ss_pred H-HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 306 K-FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 306 ~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
+ .....-.+..-.+..-+.........-+...+++.+..++++.+... .++....+..-|.++...|+..+-.-
T Consensus 225 n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~ 299 (611)
T KOG1173|consen 225 NEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFL 299 (611)
T ss_pred cccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHH
Confidence 0 01111111111233445555666667777888899999988888763 45666667777778888888888777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
+=.++.+.-+. ...+|-++.-.|.-.|+..+|.+.|.+...-. +.=...|-.+...|.-.|..++|+..+....+.-.
T Consensus 300 lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 300 LSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 77788776433 67788888888888899999999998876543 11234577778888888888888888765543110
Q ss_pred ccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC
Q 004922 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL 544 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~ 544 (723)
-..-+..|..+=.+..++.+.|.++|.+.... .
T Consensus 378 ----------------------------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~ 410 (611)
T KOG1173|consen 378 ----------------------------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-A 410 (611)
T ss_pred ----------------------------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 01123344444444556788888888887764 2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMRED----G-MS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
+-|+...+-+.....+.+.+.+|..+|...... + -+ -...+++.|..+|.+.+++++|+..+++.... ..-|.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~ 489 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDA 489 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCch
Confidence 336677777777777788888998888877631 1 01 14556788888888899999999999888764 24478
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 667 (723)
.++.++.-.|...|+++. |++.|++. -.+.||..+...++....
T Consensus 490 ~~~asig~iy~llgnld~---Aid~fhKa--L~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDK---AIDHFHKA--LALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHhcChHH---HHHHHHHH--HhcCCccHHHHHHHHHHH
Confidence 888888888888888776 44466554 466777766666666544
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=9.4e-10 Score=112.05 Aligned_cols=267 Identities=13% Similarity=0.069 Sum_probs=154.2
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--- 143 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--- 143 (723)
|.. ......++..|...|+++.|+.+++.+++.=..-..-.++.....+..+...|...+++++|+.+|++++..-
T Consensus 196 P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 444 6677779999999999999999999988771011112233344445567777999999999999999998752
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC------CcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------VKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..++.. ....++.++...+...|++++|..+++++.+.... +.-.
T Consensus 275 ~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~-------------------------- 325 (508)
T KOG1840|consen 275 FGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA-------------------------- 325 (508)
T ss_pred cCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH--------------------------
Confidence 233333 34445555555566699999999998887642211 1112
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHL---SSP-N---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ----N 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g 286 (723)
..++.++..++..+++++|..++....+.- +.+ + ..+++.|...|.+.|++++|.++|+..+.. +
T Consensus 326 ----~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 326 ----AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred ----HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 234445555555555555555554432210 111 1 235666666666666666666666655432 1
Q ss_pred CcccH---HHHHHHHhhhc--CChHHHHHHHHHH----HHcC--CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 287 VTLNI---YVFNSLMNVNA--HDLKFTLEVYKNM----QKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 287 ~~~~~---~~~~~ll~~~~--~~~~~a~~~~~~m----~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
-.-+. ..++-+-..+. +.+..|.++|.+. +..| .+-...+|..|...|...|++++|.++.+.+....+
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 11111 11111111111 3344444444332 2222 223356788899999999999999999888875433
Q ss_pred --cCCccccHHHHH
Q 004922 356 --KGVLKLDVFTYS 367 (723)
Q Consensus 356 --~g~~~~~~~~~~ 367 (723)
.|...|+.....
T Consensus 482 ~~~~~~~~~~~~~~ 495 (508)
T KOG1840|consen 482 QRLGTASPTVEDEK 495 (508)
T ss_pred HcCCCCCcchhHHH
Confidence 233344444433
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=1.9e-09 Score=115.74 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=92.1
Q ss_pred hhhccccCCcchhhhHHHHHHHHh---------hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCcc
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLA---------KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI 129 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 129 (723)
+.+++..+|+. ...|..++..+. ..|++++|...++++++. +|+....+... ...+...|++
T Consensus 284 ~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~l------g~~~~~~g~~ 354 (553)
T PRK12370 284 LTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLL------GLINTIHSEY 354 (553)
T ss_pred HHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHH------HHHHHHccCH
Confidence 44457777777 556655554433 234467777777777777 55543332222 2235667777
Q ss_pred chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 130 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
++|+..|+++++ +.|+.. ..+..+..+ +...|++++|+..++++++.. |.+...+...+..+...|++++
T Consensus 355 ~~A~~~~~~Al~--l~P~~~---~a~~~lg~~---l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISA---DIKYYYGWN---LFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHHHHHHH--hCCCCH---HHHHHHHHH---HHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHH
Confidence 777777777776 455433 122222222 333677777777777777655 4443333333333444455555
Q ss_pred HHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 210 AIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 210 A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
|+..+..+ |.+...+..+...|...|++++|...+.++.
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55544432 2223334445555555555555555555543
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.8e-06 Score=83.33 Aligned_cols=447 Identities=14% Similarity=0.107 Sum_probs=258.8
Q ss_pred HHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC--C-cchHHHHHHHHHhcCCHHH
Q 004922 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--A-DILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~ 239 (723)
......|++++|+....+++..+ |++......-+-++.+.++++.|+.+.+.-+. . ...+..-+-..-+.+..++
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 34555899999999999999866 88888888888889999999999977665432 1 1222233334447899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHHHHHHc
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (723)
|+..++.... .+..+...-...+-+.|++++|+.+|+.+.+.+.. -|...-..++.+-. +... +.+...
T Consensus 98 alk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~~~q~v 167 (652)
T KOG2376|consen 98 ALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-QLLQSV 167 (652)
T ss_pred HHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-HHHHhc
Confidence 9999883322 34456777778889999999999999999887543 22222222322211 1111 122222
Q ss_pred CCCcChhhHHHHHH---HHHHcCChHHHHHHHHHHHhhhhcC----Ccc-ccH-----HHHHHHHHHHHccCCHHHHHHH
Q 004922 319 GVMADMASYNILLK---ACCLAGNTVLAQEIYGEVKHLEAKG----VLK-LDV-----FTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 319 g~~~~~~~~~~ll~---~~~~~~~~~~A~~~~~~~~~~~~~g----~~~-~~~-----~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
...| ..+|..+.+ .+...|++.+|+++++...+..... ... -+. ..-.-|.-.+-..|+.++|..+
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2223 335555554 4457899999999999984433211 000 011 1122344456678999999999
Q ss_pred HHHHHHCCCCCCHHH----HHHHHHHHHhcCC-HH-HHHHHHHHHHHcCC----------CCCHHHHHH-HHHHHHHhCC
Q 004922 386 KEDMLSAGVTPNTIT----WSSLINACANAGL-VE-QAMHLFEEMLQAGC----------EPNSQCCNI-LLQACVEACQ 448 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~----~~~li~~~~~~g~-~~-~a~~~~~~~~~~~~----------~~~~~~~~~-ll~~~~~~g~ 448 (723)
|...+...+. |... -|.++. +..-.+ ++ .++..++....... .......|. ++..| .+.
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 9999987643 4432 233322 222111 11 12222221111000 011111221 22222 223
Q ss_pred HHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh-
Q 004922 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT- 527 (723)
Q Consensus 449 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~- 527 (723)
.+.+.++...... ..| ...+.+++..+.+
T Consensus 323 ~~q~r~~~a~lp~-------------------------------------------------~~p-~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 323 MDQVRELSASLPG-------------------------------------------------MSP-ESLFPILLQEATKV 352 (652)
T ss_pred HHHHHHHHHhCCc-------------------------------------------------cCc-hHHHHHHHHHHHHH
Confidence 3333333322110 122 2344455554432
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 528 ---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 528 ---~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
....+..++...-+....-...+.-.++......|+++.|.+++. .+.+.+-.|.. ...+...+.+.
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~ 430 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKI 430 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhc
Confidence 244566666655554333334566677788889999999999999 55555555554 44556667777
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhh
Q 004922 597 KRLKQAFSLFEEMKHY--QIQPNLVTYITL----LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGV 670 (723)
Q Consensus 597 g~~~~A~~~~~~m~~~--g~~p~~~~~~~l----l~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~ 670 (723)
++.+-|.+++.+.... .-.+......++ ...-.+.|+.++ |..+++++.+... +|..+...++.+|++-+
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n~-~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFNP-NDTDLLVQLVTAYARLD 506 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhCC-chHHHHHHHHHHHHhcC
Confidence 7777777777766521 012222333333 333356788555 5668889988543 57888999999999977
Q ss_pred hhhhhcccccch
Q 004922 671 IQDKNQNQGEVT 682 (723)
Q Consensus 671 ~~~a~~~~~~~~ 682 (723)
++.|..+...+.
T Consensus 507 ~eka~~l~k~L~ 518 (652)
T KOG2376|consen 507 PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhhcCC
Confidence 777777665443
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.7e-06 Score=80.62 Aligned_cols=447 Identities=11% Similarity=0.056 Sum_probs=232.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChh-hHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 157 (723)
.-+..+.++..|+.+++.....+-+-. ....+ +.-.+.+.|++++|.+.|..+.+..-.|. -+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--------ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~------el~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--------IAHCYFHLGDYEEALNVYTFLMNKDDAPA------ELGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--------HHHHHHhhccHHHHHHHHHHHhccCCCCc------ccch
Confidence 445558899999999988776543222 22222 22236789999999999998887543332 2222
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (723)
.+..| ..-.|.+.+|..+-... |+++.....+.....+.++-++-..+.+.+.+..+--.+|....-.+-.+
T Consensus 96 nLAcc--~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACC--KFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHH--HHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 22222 22368889988876543 44444445555666677777777777777766666667777777777889
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHhh----hcCChHHHHHH
Q 004922 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV----NAHDLKFTLEV 311 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~----~~~~~~~a~~~ 311 (723)
.+|+++|..+... .|+-...|.-+. .|.+..-++-+.+++.-..+. -|| +...|..... +.| ..|++-
T Consensus 168 QeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ng--r~ae~E 241 (557)
T KOG3785|consen 168 QEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLING--RTAEDE 241 (557)
T ss_pred HHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhcc--chhHHH
Confidence 9999999998874 355555555444 456677777777777766654 234 3333333221 222 223333
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 312 YKNMQKLGVMADMASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 312 ~~~m~~~g~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
.+.+.+.+-.. |- .+.-+++. .+-+.|++++--+.+ +-|.. -..|+--|.+.+++.+|..+.
T Consensus 242 ~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~------~IPEA--RlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 242 KKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMK------HIPEA--RLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred HHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHh------hChHh--hhhheeeecccccHHHHHHHH
Confidence 34443322110 11 12222222 223455555544433 22222 223444567777777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAG-------LVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+++.- ..| .-|-.-.-.+...| ...-|.+.|.-.-.++...|.. --..+..++.-..++++.+-.+..
T Consensus 309 Kdl~P--ttP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 309 KDLDP--TTP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred hhcCC--CCh--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55421 111 11211111112222 2334555555444443332221 122223333333445555555544
Q ss_pred hhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHHHHH
Q 004922 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMN 537 (723)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~l~~ 537 (723)
+..-- ...|...||..-.-++ ++..+|+++|-
T Consensus 385 i~sYF-----------------------------------------------~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 385 IESYF-----------------------------------------------TNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHh-----------------------------------------------cCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 43211 1233333333222222 45666666665
Q ss_pred HHHHcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCC
Q 004922 538 EMRTVGLSPNHISWTI-LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQ 615 (723)
Q Consensus 538 ~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (723)
.+....++ |..+|.+ |..+|.+++..+.|+.++-++.. .-+..+.--+| +-|.+.+.+=-|-+.|+.+.. ..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 55443333 4445543 34566677777777666544432 22233333333 456666666666666666654 45
Q ss_pred CCHHHHHH
Q 004922 616 PNLVTYIT 623 (723)
Q Consensus 616 p~~~~~~~ 623 (723)
|++.-|..
T Consensus 492 P~pEnWeG 499 (557)
T KOG3785|consen 492 PTPENWEG 499 (557)
T ss_pred CCccccCC
Confidence 66666653
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.3e-08 Score=103.78 Aligned_cols=258 Identities=16% Similarity=0.122 Sum_probs=180.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LS-SPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
|.-..+...|...|...|+++.|..++....+. |. .|.+.+ .+.+...|...+++.+|..+|+++.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL------- 268 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL------- 268 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-------
Confidence 344466777999999999999999999887663 21 244433 4457778889999999999998765
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccccHH-HHH
Q 004922 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYS 367 (723)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~~~~-~~~ 367 (723)
.+++.......+.-..+++.|..+|.+.|++++|...++....+... |...|.+. .++
T Consensus 269 -------------------~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 269 -------------------TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -------------------HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 34444443333334567788888999999999999988888765443 22333443 366
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C---CCCCH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSA---GVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQA----G---CEPNS 433 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~ 433 (723)
.+...++..+++++|..++....+. -+.++ ..+++.|...|...|++++|.+++++..+. + ..-..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788899999999988876542 12222 357888999999999999999998877653 1 11224
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
..++.+...|.+.++..+|.++|.+..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~----------------------------------------------------- 436 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAK----------------------------------------------------- 436 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHH-----------------------------------------------------
Confidence 467777788888888888888886432
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (723)
Q Consensus 514 ~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (723)
.+. .....+.+-...+|..|...|...|++++|+++.+...
T Consensus 437 --------------------~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 --------------------DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 11111122234588999999999999999999988776
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=9.1e-09 Score=110.57 Aligned_cols=115 Identities=4% Similarity=-0.117 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc---------CCChHHHHHHhhhC----CCCcchHHHHHHHHHhc
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKK 234 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 234 (723)
.+..++|+..|++.++.. |+....+..++..+.. .+++++|...++++ |.+..++..+...+...
T Consensus 274 ~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 355678888888888755 6666666555544331 12244454444432 44445555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|++++|...|++..+.++ .+...+..+...+...|++++|+..+++..+.
T Consensus 352 g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555555555554321 13444555555555555555555555555544
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=6.5e-07 Score=90.30 Aligned_cols=439 Identities=13% Similarity=0.064 Sum_probs=272.4
Q ss_pred hccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc
Q 004922 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (723)
-..++|...+...+.+++. .|... .++.+..- .+-..|+-++|.+..+..+... +.+...|..++-.+..
T Consensus 18 yE~kQYkkgLK~~~~iL~k--~~eHg---eslAmkGL---~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK--FPEHG---ESLAMKGL---TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh--CCccc---hhHHhccc---hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhh
Confidence 3678888888888888873 44322 23222221 2333799999999998877644 6788999999999999
Q ss_pred CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..++++|++.|..+ |++...+..+.-.-++.|+++..........+. .| ....|..+..++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998774 667788888888888999999999998888874 34 455688888888999999999999
Q ss_pred HHHHHhCCC-cccHHHHHHH--------HhhhcCChHHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChHHHHHHHH
Q 004922 279 YEDLRSQNV-TLNIYVFNSL--------MNVNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYG 348 (723)
Q Consensus 279 ~~~m~~~g~-~~~~~~~~~l--------l~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~ 348 (723)
+++..+... .|+...+.-. +....|..+.|++.+..-... ..|-. .-..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999987642 3554443222 223446667776666554432 12322 22344567788899999999999
Q ss_pred HHHhhhhcCCccccHHHHHHHH-HHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 004922 349 EVKHLEAKGVLKLDVFTYSTIV-KVFADAKWWQMAL-KVKEDMLSAGVTPNTITWS-SLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 349 ~~~~~~~~g~~~~~~~~~~~ll-~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.+.. ..||..-|...+ .++.+-.+.-+++ .+|....+. .|....-. .=++......-.+..-.++..+.
T Consensus 244 ~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9887 346766555544 4443333333344 556555443 11111111 11111111223344556677777
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccc
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (723)
+.|+++- +..+...|- ++..+. +++++...-.....+. ....+
T Consensus 316 ~Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~------------------------------~~f~~ 358 (700)
T KOG1156|consen 316 SKGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGT------------------------------GMFNF 358 (700)
T ss_pred hcCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccc------------------------------cCCCc
Confidence 7776553 333333332 112211 3333332211100000 00000
Q ss_pred cccc-CCCcCHHHHHHH--HHHH--hhcHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004922 506 DKRF-SFKPTTTTYNIL--MKAC--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (723)
Q Consensus 506 ~~~~-~~~p~~~~~~~l--l~~~--~~~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (723)
.... --+|....|... +..+ .++.+.|...++..+.. .|+.+ .|..=...+.+.|++++|..++++..+..
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 0000 025555555443 3333 35788999999988874 45544 55555688899999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
.||...=..-.+-..++.+.++|.++.....+.|. +..-.-.-+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mq 480 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQ 480 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhh
Confidence 35555444666777789999999999999988876 4444444343
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1e-05 Score=81.76 Aligned_cols=513 Identities=11% Similarity=0.126 Sum_probs=291.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+..+|+.......|++++.. +... .+...+..+++-... .|-++.++.++++.++.. |.. ....+..++
T Consensus 112 l~~Q~~iT~tR~tfdrALra-Lpvt--qH~rIW~lyl~Fv~~---~~lPets~rvyrRYLk~~--P~~---~eeyie~L~ 180 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRA-LPVT--QHDRIWDLYLKFVES---HGLPETSIRVYRRYLKVA--PEA---REEYIEYLA 180 (835)
T ss_pred HHhcchHHHHHHHHHHHHHh-CchH--hhccchHHHHHHHHh---CCChHHHHHHHHHHHhcC--HHH---HHHHHHHHH
Confidence 45788888888889888874 2221 133456666664444 788889999999998755 543 455677788
Q ss_pred cCCChHHHHHHhhhC-----------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCH--HHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV-----------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNM--YICRTIIDVCG 267 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~--~~~~~l~~~~~ 267 (723)
..+++++|.+.+... +.+...|..+-+...+.-+.-.-+.+ +.+.+.|+. +|. ..|..|.+.|.
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 889999888776664 33446666666666665444333332 223333332 453 46999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc------------------C------ChHHHHHHHHHHHHcCC---
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVYKNMQKLGV--- 320 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~------------------~------~~~~a~~~~~~m~~~g~--- 320 (723)
+.|.+++|.++|++....- ..+.-|..+..+|+ + +++..+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999987752 23333333332221 1 23334445555544320
Q ss_pred --------CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 321 --------MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 321 --------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
+.+...|..-+. +..|+..+-...|.+..+-....... .-...|..+...|-..|+++.|..+|++..+
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 112233322222 23455666666666665421111000 1123588888889999999999999999887
Q ss_pred CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------C------CCCHHHHHHHHHHHHHhCCHHH
Q 004922 392 AGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQAG-----------C------EPNSQCCNILLQACVEACQFDR 451 (723)
Q Consensus 392 ~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~------~~~~~~~~~ll~~~~~~g~~~~ 451 (723)
...+-- ..+|..-...=.+..+++.|+++++.....- . ..+...|+..++.-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 644321 2345555555567778888888887664321 0 1133445556666666778888
Q ss_pred HHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHH-HHHHHHHHHhhcHH
Q 004922 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYNILMKACCTDYY 530 (723)
Q Consensus 452 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~ 530 (723)
...+|+++.+..+ ..|... -|..++.- -+-++
T Consensus 496 tk~vYdriidLri----------------------------------------------aTPqii~NyAmfLEe-h~yfe 528 (835)
T KOG2047|consen 496 TKAVYDRIIDLRI----------------------------------------------ATPQIIINYAMFLEE-HKYFE 528 (835)
T ss_pred HHHHHHHHHHHhc----------------------------------------------CCHHHHHHHHHHHHh-hHHHH
Confidence 8888888776543 133322 12222211 01256
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHI-SWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKV--CVRSKRLKQAFS 604 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~ 604 (723)
++.++++.-+..-..|+.. .|+..+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+ =-+.|....|++
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777666554456654 56666655543 3468999999999998 676553322222211 123688899999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H-Hh-hhhhhhhcc
Q 004922 605 LFEEMKHYQIQPN--LVTYITLLRAR-SRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE--W-CE-GVIQDKNQN 677 (723)
Q Consensus 605 ~~~~m~~~g~~p~--~~~~~~ll~~~-~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~--~-~~-g~~~~a~~~ 677 (723)
++++... ++++. ...|+..|.-. .-.| +-....+|++..+. -||...-...|+- + ++ |.++.|...
T Consensus 608 iyerat~-~v~~a~~l~myni~I~kaae~yG----v~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 608 IYERATS-AVKEAQRLDMYNIYIKKAAEIYG----VPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHHhC----CcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999764 34442 34566555432 1222 11223355555544 2443333332221 1 12 555555544
Q ss_pred cccchHhhhcccCChhhhHHHHHHHHHHhhhh
Q 004922 678 QGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAA 709 (723)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 709 (723)
+. .+.+--+++....+......+--+.|.
T Consensus 681 ya---~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YA---HGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HH---hhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 32 333334455555555544444334333
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=2.7e-08 Score=95.08 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=130.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 556677888888888888888888877643 2356677778888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
+.+...+..+...+...|++++|.+.++..... .........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED---PLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHcCCHHH
Confidence 223334455556666667777777777666541 1011233445556666677777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
|...+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776655322 4456666667777777777777777776665 23455556666666667777777776665544
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=6.7e-09 Score=99.26 Aligned_cols=196 Identities=11% Similarity=0.038 Sum_probs=116.6
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+...|++++|+..+++++.. .|.... .+..+...+...|++++|.+.+++..+. .|+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~ 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYL------AYLALALYYQQLGELEKAEDSFRRALTL--NPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 3677888899999999999999999999887 455332 2234455588999999999999999874 34322
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~ 225 (723)
..+..+.. .+...|++++|+..++++......+.....+..++..+...|++++|...+... |.+...+.
T Consensus 100 ---~~~~~~~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 100 ---DVLNNYGT---FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred ---HHHHHHHH---HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 12223333 334489999999999998764322333334444455555555555555544432 33334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
.+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555555554443 1223333444444444455555555444443
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=4.3e-06 Score=84.60 Aligned_cols=456 Identities=13% Similarity=0.083 Sum_probs=282.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..| ..+++...+.+.+..+.. .|.+...+-..+. .++..|+-++|.+..+..++..+. ..+
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL------~L~~lg~~~ea~~~vr~glr~d~~--S~v 76 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGL------TLNCLGKKEEAYELVRLGLRNDLK--SHV 76 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccc------hhhcccchHHHHHHHHHHhccCcc--cch
Confidence 33444444444 458888889998988886 5554433323333 378899999999999988874332 222
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHH----HhhhCCCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~ 226 (723)
..-.++++- ....++++|+++|..++..+ +++...+.-+.-.-.+.++++.... +++..|.....|..
T Consensus 77 CwHv~gl~~------R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 77 CWHVLGLLQ------RSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred hHHHHHHHH------hhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 222223222 23789999999999998755 8888888777666667777765544 34445777788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH---H
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII------DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---S 296 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ 296 (723)
++.++.-.|++..|..+.+...+... .|+...+.... ....+.|.+++|++.+..-... ..|...+. +
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka 226 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHH
Confidence 99999999999999999999876542 35554443322 2346678888888777654332 12222221 2
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHH-HHHHHcCChHHHH-HHHHHHHhhhhcCCccccHHHHHHH-HHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL-KACCLAGNTVLAQ-EIYGEVKHLEAKGVLKLDVFTYSTI-VKVF 373 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~~~~~~A~-~~~~~~~~~~~~g~~~~~~~~~~~l-l~~~ 373 (723)
-+....+++++|..++..++..+ ||..-|...+ .++.+-.+.-++. .+|...... .|....-..+ +..+
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~------y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK------YPRHECPRRLPLSVL 298 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc------CcccccchhccHHHh
Confidence 22234578999999999999874 6666655544 4554333333444 677766542 1221111111 1111
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--H
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ----AG----------CEPNSQCC--N 437 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~ 437 (723)
-...-.+..-.++..+++.|++ .++..+...|-.....+-..++.-.+.. .| -+|+...| -
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 1222233445666777788865 3455555555443333322222222221 11 14555444 4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (723)
.+...+-+.|+++.|...++....+ .|+.+-
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH-------------------------------------------------TPTliE 406 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH-------------------------------------------------TPTLIE 406 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc-------------------------------------------------CchHHH
Confidence 5677888999999999999876643 454332
Q ss_pred ---HHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------H
Q 004922 518 ---YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------Y 586 (723)
Q Consensus 518 ---~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~ 586 (723)
.-+-|..+.++++.|...+++..+... ||...-.--..-..+.++.++|.++.......|. +... |
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHH
Confidence 223445556789999999999988643 4655554566666788999999999999988775 3322 2
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHH
Q 004922 587 TTA--IKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 587 ~~l--i~~~~~~g~~~~A~~~~~~m~ 610 (723)
-.+ ..+|.+.|++..|++=|....
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 222 246778888888877666554
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=3.6e-08 Score=86.54 Aligned_cols=198 Identities=13% Similarity=-0.002 Sum_probs=146.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
.......|.-.|.+.|++..|..-+++++++ +|+.+..++....+ |.+.|..+.|.+.|+++++ +.|+.-
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAls--l~p~~G 103 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHY------YQKLGENDLADESYRKALS--LAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH------HHHcCChhhHHHHHHHHHh--cCCCcc
Confidence 3667788899999999999999999999999 88887776666666 8999999999999999998 667544
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~ 225 (723)
..+|.+..-+|. .|++++|...|++.+.....+....++..++-...+.|+.+.|...+.+. |..+.+..
T Consensus 104 ---dVLNNYG~FLC~---qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 104 ---DVLNNYGAFLCA---QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred ---chhhhhhHHHHh---CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 455555554455 89999999999999876666666666666776666777777777666552 55556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.+.......|++..|...++.....+. ++..+.-..|+.-...|+.+.+.+.=.++.+
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677777777777777777777666554 6666666666666666766666555544443
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4e-06 Score=83.91 Aligned_cols=460 Identities=12% Similarity=0.025 Sum_probs=242.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhh
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 156 (723)
=+..+..+|++++|.+...+.+..++++. .++.+=+.++.+.++|++|+.+.+.=.. ...++..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--------~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDE--------DAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcH--------hhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhh-
Confidence 35566778999999999999999864433 2334555667899999999965543221 11111111
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC-CCCcchHHHHHHH-HHhc
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVRE-FGKK 234 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~-~~~~ 234 (723)
+=+++|.| +.++.++|+..++ +..+.+.-....-++.+-+.+++++|..+|..+ ..+...+...+.+ +...
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 35566654 4699999999888 334555556677788899999999999999887 3333333332222 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------Cc--ccHHHHHHHHh----
Q 004922 235 RDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-------VT--LNIYVFNSLMN---- 299 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-------~~--~~~~~~~~ll~---- 299 (723)
+-...+. +.+.... .| +-..+....-.+...|+|.+|+++++...+.+ -. -+...=-..|+
T Consensus 156 ~a~l~~~-~~q~v~~---v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 156 AAALQVQ-LLQSVPE---VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHhhhHH-HHHhccC---CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 1111111 2222222 23 22334444455778899999999999883211 11 11111111222
Q ss_pred ---hhcCChHHHHHHHHHHHHcCCCcChhh----HHHHHHHHHHcCChH-HHHHHHHHHHhhhhcCC------ccccHHH
Q 004922 300 ---VNAHDLKFTLEVYKNMQKLGVMADMAS----YNILLKACCLAGNTV-LAQEIYGEVKHLEAKGV------LKLDVFT 365 (723)
Q Consensus 300 ---~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~~~~~-~A~~~~~~~~~~~~~g~------~~~~~~~ 365 (723)
-..|+..+|..+|...++.. ++|... .|.|+.+-....-++ .++..++........+. -+.....
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 13488999999999998876 344422 233332222111112 12222222211000000 0011111
Q ss_pred H-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 366 Y-STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN--AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 366 ~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
. +.++..|. +.-+.+.++-.... +..| ...+.+++..+.+ ......+.+++...-+..-.-...+.-.++..
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1 22232222 22223333222221 1122 3445555554433 23467777777777665322234566677778
Q ss_pred HHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHH
Q 004922 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll 522 (723)
....|+++.|.+++......... -+...+..|..+.+-..+
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~s---------------------------------------s~~~~~~~P~~V~aiv~l 426 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKS---------------------------------------SILEAKHLPGTVGAIVAL 426 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhh---------------------------------------hhhhhccChhHHHHHHHH
Confidence 88999999999999844311100 011112245544443333
Q ss_pred HHHhhcHHHHHHHHHHHHHc--CCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 004922 523 KACCTDYYRVKALMNEMRTV--GLSPNHISWTILI----DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (723)
Q Consensus 523 ~~~~~~~~~a~~l~~~m~~~--~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 596 (723)
.--.++.+.|..++++.+.. .-.+......+++ ..-.+.|+-++|..+++++.+.. .+|..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 33334444455555544431 0111222223333 33345688888888888887743 45777777788887754
Q ss_pred CCHHHHHHHHHHH
Q 004922 597 KRLKQAFSLFEEM 609 (723)
Q Consensus 597 g~~~~A~~~~~~m 609 (723)
++++|..+-+.+
T Consensus 506 -d~eka~~l~k~L 517 (652)
T KOG2376|consen 506 -DPEKAESLSKKL 517 (652)
T ss_pred -CHHHHHHHhhcC
Confidence 677777766654
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.2e-06 Score=78.31 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
-++|.++++.-.+ +.|+- ...+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+.+|++.|.
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3677888777666 34543 35677788899999999999999998874 7999999999999999999999999999
Q ss_pred HHHHCCCCCC
Q 004922 608 EMKHYQIQPN 617 (723)
Q Consensus 608 ~m~~~g~~p~ 617 (723)
...+ +.|+
T Consensus 496 ~ALr--~dP~ 503 (564)
T KOG1174|consen 496 KALR--QDPK 503 (564)
T ss_pred HHHh--cCcc
Confidence 8876 4454
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.1e-07 Score=91.15 Aligned_cols=283 Identities=13% Similarity=0.072 Sum_probs=216.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH----HHHHHhhhCCCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~ 229 (723)
...++...+-.+...+++.+-.++++.+.+.. |.....+..-+..+...|+-. .+.++.+..|+.+.+|.+++-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 33455555555666899999999999998865 544444544444555666544 455667777999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCcccHHHHHHHHhhhcCChH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLK 306 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~ 306 (723)
.|...|++.+|++.|.+.... .|. ...|-.+...|+-.|..++|...|...-+. |.. -...|..+=....++.+
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHH
Confidence 999999999999999998763 232 457999999999999999999999887664 321 13344444444568899
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc-CCccc-cHHHHHHHHHHHHccCCHHHHHH
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKL-DVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-g~~~~-~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+......+. +.-.+ -..+++.|..+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988764 557888888877777889999999999988742211 10111 23468899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
.+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++..+..
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 99999987655 8899999999999999999999999998764 7888777777775543
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=5.6e-06 Score=77.33 Aligned_cols=442 Identities=12% Similarity=0.084 Sum_probs=250.5
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+....++..|+.+++.....+-... +..+..+..|.- ..|++++|...+.-+......| ...+..++-..-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~--~el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAP--AELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCC--cccchhHHHHHH
Confidence 3466788888888887764332211 234444443332 3799999999999887755333 333444444444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
-.|.+.+|..+..+.|+++..-.-|...-.+.++-++-...-..+.. ...---.|....-..-.+++|+++|...
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988876666666666677776666655554432 1222233444433445789999999998
Q ss_pred HhCCCcccHHHHHHHHhh---hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc
Q 004922 283 RSQNVTLNIYVFNSLMNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
... .|+....|.-+.. ...-++-+.++++-..+. ++.++...|.......+.=.-..|..-...+.. ++.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 876 3454444444442 224556667777666554 233344455444333333222223222222222 221
Q ss_pred cccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 360 KLDVFTYSTIVKVFAD-----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.. | ..+.-+++ ...-+.|++++--+.+. .| ..--.++-.|.+.+++.+|..+..++.-. .|-..
T Consensus 251 --~~--~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 251 --QE--Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred --cc--c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 01 1 12222233 23456788887766653 33 23345666788999999999888776311 22222
Q ss_pred HHHHHHHHHHHhCCH-------HHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc
Q 004922 435 CCNILLQACVEACQF-------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~-------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (723)
....++ +...|+- .-|.+.|+-. .
T Consensus 320 ilKgvv--~aalGQe~gSreHlKiAqqffqlV-----------------------------------------------G 350 (557)
T KOG3785|consen 320 ILKGVV--FAALGQETGSREHLKIAQQFFQLV-----------------------------------------------G 350 (557)
T ss_pred HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHh-----------------------------------------------c
Confidence 222222 2233332 2233333221 1
Q ss_pred ccCCCcCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 508 RFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (723)
Q Consensus 508 ~~~~~p~~~~~~~ll~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (723)
..+..-|...-..-+.+| ...++++.-.++.+..--...|...|| +..+++..|++.+|+++|-++....++ |..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 222444433322222222 246778888888877765555666665 678889999999999999887754444 566
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHcCCC
Q 004922 585 AYTTAI-KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL-LRARSRYGSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 585 ~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
+|-+++ ++|.+.|+++.|+.++-++. -.-+..+.-.+ ..-|.+.+.+--+.+ -|+.+......
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK---AFd~lE~lDP~ 493 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK---AFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHccCCC
Confidence 665554 78899999999987766653 23344444443 456777776555544 45555544433
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.4e-06 Score=90.49 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=54.8
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCC
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA--------YTTAIKVCVRSKR 598 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g~ 598 (723)
+++.+|...++....... -|...-+-.+..+.++|++++|.+++......+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555433 2666666777778888889999888888876654442211 2345577888888
Q ss_pred HHHHHHHHHHHH
Q 004922 599 LKQAFSLFEEMK 610 (723)
Q Consensus 599 ~~~A~~~~~~m~ 610 (723)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888888777655
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=4.6e-06 Score=88.34 Aligned_cols=367 Identities=13% Similarity=0.023 Sum_probs=204.6
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
.|.+.++.||.- ...|..|...|+...+...|...|+++.+. +|+.+.. -..+...|+....++.|..+.-
T Consensus 480 ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaea------aaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 480 ALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEA------AAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchhhhh------HHHHHHHhhccccHHHHHHHHH
Confidence 377888999999 889999999999999999999999999888 6664432 2345666889999999988854
Q ss_pred HHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..-+. .|... ...+ ....-..+.+.++...|+.-|+..+... |.+...|..++.+|.+.|++..|.+.|.++
T Consensus 551 ~~~qk--a~a~~---~k~n-W~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 551 RAAQK--APAFA---CKEN-WVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHhhh--chHHH---HHhh-hhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 43332 22110 0000 0111111344788888999898887644 899999999999999999999999999775
Q ss_pred ----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 004922 218 ----PRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-- 285 (723)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-- 285 (723)
|.+...-.-....-+..|.+.+|+..+..+...- ...-..++-.+...+.-.|-..+|.+.++.-++.
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333444445666788899999999888875421 1112333444444444445455555555543321
Q ss_pred -----CCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh---H---HHHHHHHHHHhhh
Q 004922 286 -----NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---V---LAQEIYGEVKHLE 354 (723)
Q Consensus 286 -----g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~---~A~~~~~~~~~~~ 354 (723)
...-+...|..+ .++..+|-+.. .. .|+......+..-.-+.+.. + -+.+.+-.-.+
T Consensus 703 ~~l~h~~~~~~~~Wi~a--------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVA--------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHHHhhhhhHHHHHHH--------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 101111111111 12333333332 11 12222222222212222222 1 11111111111
Q ss_pred hcCCccccHHHHHHHHHHHHc----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFAD----A----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~----~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
...+..+|..++..|.+ . .+...|...+.+..+..-. +..+|+.|.-. ...|++.-+...|-+-..
T Consensus 771 ----l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 771 ----LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred ----HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 11223344444433332 1 1223566666666554222 45555555433 555666666666655444
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
.. +.+..+|..+--.+.+..+++-|...|....
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 32 3355566666666677777777777776554
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=8.7e-08 Score=88.11 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=109.5
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (723)
..+...|.+.|-+.+|...|+..+++-..| .+|-.|.+++.+ -..++.|+.++.+-++.. |.++.....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~------dTfllLskvY~r---idQP~~AL~~~~~gld~f--P~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP------DTFLLLSKVYQR---IDQPERALLVIGEGLDSF--PFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch------hHHHHHHHHHHH---hccHHHHHHHHhhhhhcC--Cchhhhhhh
Confidence 345555677777777777777666643222 355555555444 566777777776655433 555555555
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004922 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (723)
..+.+...++.++|.++++.+ |.+.++...+...|.-.++.+-|+..|.++.+.|+ -+...|+.+.-.|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 555555555555555555443 22334444444445555555555555555555554 2344455555555555555
Q ss_pred HHHHHHHHHHHhCCCcccH--HHHHHH--HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHH
Q 004922 273 MKSRAIYEDLRSQNVTLNI--YVFNSL--MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 348 (723)
+-++.-|.+....--.|+. ..|-.+ +.+-.||+..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 5555555554433221211 111111 1112244444444444444332 2233444444444444444444444444
Q ss_pred HHH
Q 004922 349 EVK 351 (723)
Q Consensus 349 ~~~ 351 (723)
...
T Consensus 454 ~A~ 456 (478)
T KOG1129|consen 454 AAK 456 (478)
T ss_pred Hhh
Confidence 443
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=3.4e-06 Score=87.65 Aligned_cols=285 Identities=14% Similarity=0.044 Sum_probs=191.2
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.+...|++++|++.++.-... + +|.. .....-+. -+...|+.++|..++..++..+ |++..++..+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I-~Dk~---~~~E~rA~---ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-I-LDKL---AVLEKRAE---LLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-C-CCHH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 367889999999999876653 2 2211 12233333 3444899999999999999988 99999888888877
Q ss_pred hcCC-----ChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 004922 202 VNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (723)
Q Consensus 202 ~~~~-----~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (723)
.... ..+.-.++++.+ |.....-...+. +.....+. .+...+..+...|+++ +++.+-..|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 3332 345555555553 332222111121 11222333 3344456667777632 56677777776666
Q ss_pred HHHHHHHHHHHHhC----C----------CcccHHHHHHHHhh----hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHH
Q 004922 272 YMKSRAIYEDLRSQ----N----------VTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLK 332 (723)
Q Consensus 272 ~~~a~~~~~~m~~~----g----------~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~ 332 (723)
..-..+++...... | -.|....|...+.+ +.|+++.|++.++..+.. .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 12444455444333 458999999999999886 355 677888889
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------H--HHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI------T--WSSL 404 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~--~~~l 404 (723)
.+-..|++.+|.+.++..+.+ -.-|...-+-.+..+.+.|++++|.+++...-..+..|-.. . ....
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~L-----D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEAREL-----DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999885 23567777788888999999999999999887765433221 1 2445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004922 405 INACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+|.+.|++..|+..|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 67888999999988877766553
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=1.1e-05 Score=82.34 Aligned_cols=387 Identities=14% Similarity=0.099 Sum_probs=194.6
Q ss_pred HHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004922 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
.+++...|.-+.|-++- .+..--.+-|+.|.+.|.+..|.+.-..=.. ...|......+..++.+..-+++|-.
T Consensus 596 ~q~l~dt~qd~ka~elk----~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagd 669 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK----ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGD 669 (1636)
T ss_pred HHHHHhcCchhhhhhhc----cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhh
Confidence 34444455444443332 2222233456777788877776655322111 12355555555555566656666666
Q ss_pred HHHHHHhCCCcccHHHHHHHHhhhc-C-ChHHHHHHHHHHHHcCCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 278 IYEDLRSQNVTLNIYVFNSLMNVNA-H-DLKFTLEVYKNMQKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~-~-~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
+|+.+..- + -.+.++. | .+..|.++-+-. .+..+++. .....-+...|+++.|..-|-+...
T Consensus 670 lfeki~d~----d-----kale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-- 734 (1636)
T KOG3616|consen 670 LFEKIHDF----D-----KALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-- 734 (1636)
T ss_pred HHHHhhCH----H-----HHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--
Confidence 66654421 0 0111110 0 111121111110 11111111 1122233344555555554433322
Q ss_pred hcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 355 ~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
.-..+.+......|..|+.+++.+.+... -..-|..+.+-|+..|+++.|.++|-+. .
T Consensus 735 -----------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~ 792 (1636)
T KOG3616|consen 735 -----------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------D 792 (1636)
T ss_pred -----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------c
Confidence 11234455566778888888887776532 2344666777788888888888877653 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC
Q 004922 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (723)
.++-.|.+|.+.|+|..|.++-.+.... ...
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~~-------------------------------------------------e~t 823 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHGP-------------------------------------------------EAT 823 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcCc-------------------------------------------------hhH
Confidence 3556677888888888887776554311 111
Q ss_pred HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 515 TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 515 ~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
...|-+-..-+- +.+.+|++++-.+.. |+. -|.+|-+.|..+..+++.++-.-. --..|.-.+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHH
Confidence 222221111111 123445554433322 332 367788888888888777665421 113455566677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hh
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VI 671 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g-~~ 671 (723)
|-..|+...|..-|-+..+ |.+-++.|..++.++++-+ + ....|-. + .-..+.-.|.+. .-
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayr---i---aktegg~-n--~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYR---I---AKTEGGA-N--AEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHH---H---Hhccccc-c--HHHHHHHHHHHhhCc
Confidence 7778888888877765532 5555666666666655322 2 2223321 1 122333333331 01
Q ss_pred hhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 004922 672 QDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLAIDLRGL 719 (723)
Q Consensus 672 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 719 (723)
+.|..++. ..-+++.-+.+.++++++++..|+.++
T Consensus 954 daavklln-------------k~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 954 DAAVKLLN-------------KHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred HHHHHHHH-------------hhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 11222211 334566777777778888877777654
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.4e-06 Score=83.12 Aligned_cols=287 Identities=12% Similarity=-0.009 Sum_probs=172.4
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhH
Q 004922 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~ 159 (723)
+.+-.|+-..|.+.+-.+.....-|.....+..+ ...+...|+.++|+-.|+.... +.|.....-..|..|+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~l------ak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMAL------GKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHH------hhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH
Confidence 3344455555555555444444455544443333 3337778888888888887775 5665443333333332
Q ss_pred HHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 004922 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (723)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~ 235 (723)
...|+++.-..+...+.... ......|..-+..+-...++..|+.+.++. +.+...+..-...+...+
T Consensus 277 ------~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 277 ------GQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE 348 (564)
T ss_pred ------HhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc
Confidence 33677777666666554322 122333555555555666777777666553 344455666667777788
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-hhhc---CChHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFTLE 310 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~---~~~~~a~~ 310 (723)
+.++|.-.|..... ..| +...|.-|+..|...|++.+|.-+-++..+. +..+..+...+- .++. .--++|.+
T Consensus 349 R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred chHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888877765 333 6778888888888888888877666655432 112333333221 1222 23356666
Q ss_pred HHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (723)
Q Consensus 311 ~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 389 (723)
+++.-.+. .|+ ....+.+...+...|..+++..+++.... ..||....+.|...+...+.+.+|++.|...
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66665543 333 33455566667777777777777777665 5677777777777777777777777777777
Q ss_pred HHCC
Q 004922 390 LSAG 393 (723)
Q Consensus 390 ~~~~ 393 (723)
+..+
T Consensus 498 Lr~d 501 (564)
T KOG1174|consen 498 LRQD 501 (564)
T ss_pred HhcC
Confidence 6654
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=1.9e-06 Score=88.18 Aligned_cols=206 Identities=12% Similarity=-0.031 Sum_probs=128.8
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
||+. ...|..++..+...|+.+++...+.+...... +++....... ....+...|++++|...++++++.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHV------EALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 6777 77888888888888999998888887776632 2222222111 122357899999999999999874
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA 220 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 220 (723)
.|+.. ..+......+......+..+.+.+.++. .....|........++..+...|++++|.+.++.. |.+
T Consensus 73 ~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 55443 1111100001111113555555555544 11222333344445566777888888887776663 666
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..+...|...|++++|...++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677777888888888888888888877664321 222 23446777788888888888888887543
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.7e-07 Score=86.22 Aligned_cols=127 Identities=14% Similarity=0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+.++|.+.|.+.+|.+.|+.... -.|-..||..|-+.|.+....+.|+.++.+-++.-+ -|+....-+.+.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHH
Confidence 344555555555555555554443 234444555555555555555555555555544311 1222233344444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
...++.++|.++++...+.. ..++.....+...|.-.++++.|+..|+++...+
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 55555555555555554432 2333344444444444555555555555554443
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=7.2e-07 Score=78.54 Aligned_cols=194 Identities=11% Similarity=-0.003 Sum_probs=144.7
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 004922 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (723)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (723)
-...+.....+.+.|+...|..-+++.++.. |.....|..+...|...|..+.|.+.|++. |.+..+.|+....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 3445555666777999999999999999877 888888999999999999999999888774 7788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh--hhcCChHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKF 307 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~ 307 (723)
+|..|++++|.+.|+.....-.-+ ...+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.. ...|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 999999999999999988642212 3567888888888899999999999988776321 1122222222 33467777
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
|...++.....+. ++..+.-..|..-...|+-+.+.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777766664 6666666667777777777777666555554
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=5.3e-06 Score=77.20 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=213.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..-...+...+..+|++.+|+..|..+++. +|+.|......... |...|+-.-|+.=|.+.++ +.||.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~------yLAmGksk~al~Dl~rVle--lKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATV------YLAMGKSKAALQDLSRVLE--LKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHH------HhhhcCCccchhhHHHHHh--cCccH--
Confidence 445567788889999999999999999888 89988766555444 8899999999999999997 67753
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
+..-+.-...+.++|.+++|..-|+.+++.. |..-. ..+|..-+... ......-..+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~--------------~~eaqskl~~~-~e~~~l~~ql~s 164 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL--------------VLEAQSKLALI-QEHWVLVQQLKS 164 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch--------------hHHHHHHHHhH-HHHHHHHHHHHH
Confidence 2333333333455899999999999988766 32211 11111100000 001223334555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH-HHhhhcCChHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFT 308 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~a 308 (723)
+.-.|+...|+.....+.+ +.| |...|..-..+|...|.+..|+.-++..-+..-......|.. -+....|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6677999999999999988 344 778888888999999999999888877765532222222221 122233666666
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+...++-.+. .||.-.+-. .| ..+.+..+.++.|.+ ..+.++|.+++.-.+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~---~Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFP---FY---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHH---HH---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 6666666654 344322211 11 112222223333322 4456677788888888
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 389 MLSAGVTPNTIT---WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 389 m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.++..+...... +..+-.++...+++.+|++.-.+.++-. +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777654422333 4455667778889999998888887652 3347788888889988889999999998877643
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=3.8e-07 Score=89.57 Aligned_cols=193 Identities=13% Similarity=-0.020 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHh
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGI 268 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 268 (723)
+..++..+...|+.++|...|+.. |++..+|+.+...+...|++++|...|+...+. .| +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334444444444444444443332 444556666666666666666666666666653 23 34555666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCccc-HHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 347 (723)
.|++++|.+.|+...+...... ...|..+ ....++.++|.+.|.+..... .++...+ . ......|+...+ +.+
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~l-~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWLYL-AESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLM 218 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHH
Confidence 6666666666666665422110 1111111 112245666666665443221 2222111 1 222234444333 233
Q ss_pred HHHHhhhhcC-Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 348 GEVKHLEAKG-VL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 348 ~~~~~~~~~g-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
..+....... .+ +.....|..+...+.+.|++++|...|++....++
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332100000 01 11234566666677777777777777777776653
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=8.1e-07 Score=87.24 Aligned_cols=202 Identities=10% Similarity=-0.035 Sum_probs=138.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH--h
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM--N 299 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~ 299 (723)
..|..+...|.+.|++++|...|++..+..+ .+...|+.+...+...|++++|.+.|+...+.... +...|..+- .
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5688888999999999999999999988532 36889999999999999999999999999876322 233333333 3
Q ss_pred hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~ 379 (723)
...|++++|.+.|+...+.. |+..........+...++.++|...|.+.... ..++...+ .+. ....|++
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-----~~~~~~~~-~~~--~~~lg~~ 212 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-----LDKEQWGW-NIV--EFYLGKI 212 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCccccHH-HHH--HHHccCC
Confidence 35589999999999998764 44332233333445677899999999765431 22333222 222 2334554
Q ss_pred HHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 380 QMALKVKEDMLSA---GV--T-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 380 ~~a~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.++ +.+..+.+. .+ . ....+|..+...+.+.|++++|...|++..+.. +||..-+.
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 443 344444421 11 1 123578899999999999999999999999875 33444333
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=6.3e-07 Score=83.16 Aligned_cols=299 Identities=12% Similarity=0.066 Sum_probs=184.5
Q ss_pred cccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchH
Q 004922 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (723)
Q Consensus 53 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A 132 (723)
..+.+.+..++..||++ ..++-.-+..|...|+-+.|+.-+++.++. .|+.....+-.+.+ +.++|.++.|
T Consensus 55 sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v------llK~Gele~A 125 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV------LLKQGELEQA 125 (504)
T ss_pred HHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh------hhhcccHHHH
Confidence 34445577789999999 777778889999999999999999999999 88877666665555 7899999999
Q ss_pred HHHHHHHhhcCCCcccccccchhhhh---------HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc
Q 004922 133 VGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (723)
Q Consensus 133 ~~~~~~~~~~~~~p~~~~~~~~~~~l---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (723)
..=|+.++.. .|+.-......+-+ ..-.......|+...|+..+..+++. .|.+...+..-...|..
T Consensus 126 ~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 126 EADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHh
Confidence 9999999974 44332222222111 11122233367888888888887763 47777777777777777
Q ss_pred CCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
.|++..|+.-.+.+ .++...+..+-..+-..|+.+.++....+..+. .||...+... |-+ +.+....+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKk---lkKv~K~l 273 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKK---LKKVVKSL 273 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHH---HHHHHHHH
Confidence 77777776655443 334566666777777777777777777777663 3443322111 111 12222222
Q ss_pred HHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHHHcCChHHHHHHHHHHHhhhhc
Q 004922 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (723)
Q Consensus 280 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 356 (723)
+.|.+. ...+++..+++..+...+......... +..+-.++...+++.+|++...++..
T Consensus 274 es~e~~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---- 335 (504)
T KOG0624|consen 274 ESAEQA--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---- 335 (504)
T ss_pred HHHHHH--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----
Confidence 222211 011344455555555554432212222 22333455556667777777666665
Q ss_pred CCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 357 GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 357 g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
+.|| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 336 --~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 --IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred --cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2333 556666666676666777777777666654
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5.3e-05 Score=78.75 Aligned_cols=495 Identities=12% Similarity=0.084 Sum_probs=257.8
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
-.+.|.+++|+.+|++..... .++-+ |..+|.+++|+++-+.--+..+.. ++-.+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D----------LlNKl------yQs~g~w~eA~eiAE~~DRiHLr~-------Tyy~yA~ 866 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD----------LLNKL------YQSQGMWSEAFEIAETKDRIHLRN-------TYYNYAK 866 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH----------HHHHH------HHhcccHHHHHHHHhhccceehhh-------hHHHHHH
Confidence 345677888888888776541 12223 678899999998876443322221 2222233
Q ss_pred HHHHhhccchHHHHHHHHHHHH----------hcCC--------CCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcc
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLE----------EFRL--------PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~----------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (723)
.+-..++.+.|++.|++.. .... ...+...|.--++.+...|+.+.|+.+|..+.+
T Consensus 867 ---~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 867 ---YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ---HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 3334788999998887532 1110 022345566667788889999999999887644
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C------CcccHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--N------VTLNIYVF 294 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g------~~~~~~~~ 294 (723)
|.+++...|-.|+.++|-++-++- -|..+...+.+.|-..|++.+|...|.+...- . -..+...+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888899999999999998876652 46778888999999999999999998765321 0 01123334
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh------hhhcCCccccHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYST 368 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~------~~~~g~~~~~~~~~~~ 368 (723)
|..+..-..+.-.|-+.|++.-. . +...+-.|-+.|.+.+|+++--.-.+ +.++-....|....+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 43333333345555556655421 1 22344567788888888775322111 0001001235556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNILLQAC 443 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~~~~ll~~~ 443 (723)
-...++...+++.|..++-...+ |.--+..| +..++.-..++-+.|--. .-.|+.. ....+.+.|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 66667777777777777655432 22233322 222222222222333211 1133333 344555677
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCC-----C---CccccccccCCCcCH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-----S---HYSSFDKRFSFKPTT 515 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~p~~ 515 (723)
.+.|.+..|-+-|...-.+- ..+....+...+....++.+ + -...+++......|+
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdKl----------------~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~p 1219 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDKL----------------SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNP 1219 (1416)
T ss_pred HhccchHHHHHHHhhhhhHH----------------HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccCh
Confidence 77777777666554321110 00000000000000001100 0 001223334455666
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 516 TTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (723)
Q Consensus 516 ~~~~~ll~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (723)
.+.--++..|.+ .++..-.+|+....-.+. ...+|.- ..|-+++|-+.+.++..++. ....|+.|-.-.
T Consensus 1220 q~mK~I~tFYTKgqafd~LanFY~~cAqiEie-e~q~ydK------a~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~ 1290 (1416)
T KOG3617|consen 1220 QTMKDIETFYTKGQAFDHLANFYKSCAQIEIE-ELQTYDK------AMGALEEAAKCLLKAEQKNM--STTGLDALQEDL 1290 (1416)
T ss_pred HHHhhhHhhhhcchhHHHHHHHHHHHHHhhHH-HHhhhhH------HhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHH
Confidence 666666666653 223222222222110000 0011111 13456666677766665431 222333333222
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 004922 594 VRS-----------KRLKQAFSLFEEMKHYQIQP----NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (723)
Q Consensus 594 ~~~-----------g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~ 657 (723)
... .+..+.++-...|.....-| -...|..+|..+....++..|-+ .+.+|.++-...|..
T Consensus 1291 a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyR---al~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYR---ALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHH---HHHHHhhcCCccchh
Confidence 222 23333444444454433333 35678888999998888777544 566777765554433
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=0.00025 Score=73.85 Aligned_cols=404 Identities=10% Similarity=0.058 Sum_probs=239.4
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
..+..+|..|.-+..+.|+++.+-+.|++.... ..-....|+.+...|...|.-..|+.+++.-......|+..+--.+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456678888999999999999999999997753 2235667888888899999999999999887665433433332222
Q ss_pred -HhhhcC---ChHHHHHHHHHHHH--cC--CCcChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHhhhhcCC
Q 004922 298 -MNVNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGV 358 (723)
Q Consensus 298 -l~~~~~---~~~~a~~~~~~m~~--~g--~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~~~~~~~~g~ 358 (723)
-..|.+ ..+++++.-.+... .+ -...+..|..+.-+|... ....++.+.+++..+. +.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d~ 475 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---DP 475 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---CC
Confidence 223443 33444333333333 11 123344555555555422 1234566677777653 22
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 004922 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCN 437 (723)
Q Consensus 359 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 437 (723)
-.|++..|.++= |+..++++.|++..++.++.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-....
T Consensus 476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~ 551 (799)
T KOG4162|consen 476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMD 551 (799)
T ss_pred CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhch
Confidence 345555555544 7788899999999999999866778999999999999999999999999877654 21 111111
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhc-----------------cccc----CCcCCC--chhhhhhhhhhccccccCCC
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKT-----------------QVAL----GEDYDG--NTDRISNMEHKDKQSITNTP 494 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~-----------------~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~ 494 (723)
.-+..-...++.+++.+....+..--. .... ....+. ....+........
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~------- 624 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL------- 624 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-------
Confidence 111122234555555544443332111 0000 000000 0000000000000
Q ss_pred CCcCCCCccccccccCCCcCHH-H-------HHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 004922 495 NFVPNSHYSSFDKRFSFKPTTT-T-------YNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (723)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~-~-------~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 564 (723)
........+..+.+.|+.. + |......+. ++.+++...+.+..+. ..-....|......+...|+.
T Consensus 625 ---~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 ---KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ---hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 0000001112222222221 1 111111222 2455666555555543 123455677667777888999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004922 565 EGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (723)
Q Consensus 565 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~ 641 (723)
.+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.|+.+.|..++
T Consensus 701 ~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999988887 4565 5678888899999998877777 888888753 237899999999999999988766654
Q ss_pred HH
Q 004922 642 AV 643 (723)
Q Consensus 642 ~~ 643 (723)
..
T Consensus 778 ~a 779 (799)
T KOG4162|consen 778 QA 779 (799)
T ss_pred HH
Confidence 44
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=9.6e-05 Score=76.76 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=246.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...|..|.-++...|++..+...|++...... .. ...+......+...|.-..|+.+++........|++.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~- 393 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----GE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI- 393 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc-
Confidence 56778888888889999999999988755421 11 2223445556788999999999998877643335332
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC-CCCc--ccccHHHHHHHHhc----CCC-------hHHHHHHhhh
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVN----KPD-------VNLAIRYACI 216 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~----~~~-------~~~A~~~~~~ 216 (723)
..+-+..+.|.. +-+.+++++++-.+++... .... ....+..++-+|.. ... ..++++.++.
T Consensus 394 --s~~Lmasklc~e--~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 394 --SVLLMASKLCIE--RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred --hHHHHHHHHHHh--chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 222222233332 4678888888877776521 1111 11223333333322 111 1233344444
Q ss_pred C----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCc---
Q 004922 217 V----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVT--- 288 (723)
Q Consensus 217 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~--- 288 (723)
. |.|+.+...+.--|+-.++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 2 67778888888889999999999999999998766678899999999999999999999999887654 210
Q ss_pred ---------------ccHHHHHHHHhhhc-------------------C------ChHHHHHHHHHH--------HHcC-
Q 004922 289 ---------------LNIYVFNSLMNVNA-------------------H------DLKFTLEVYKNM--------QKLG- 319 (723)
Q Consensus 289 ---------------~~~~~~~~ll~~~~-------------------~------~~~~a~~~~~~m--------~~~g- 319 (723)
--..|+..++..+. | +..++.+....+ ...|
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 00122222222211 0 111111111111 1111
Q ss_pred --------CCcCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 320 --------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 320 --------~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
..|.+ ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 01111 12334455667778888888777777653 4556667777778888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+.|......++. ++...+++...+.+.|+...|.. ++.++.+.+ +.+...|-.+...+-+.|+.++|.+.|.....
T Consensus 705 ~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999876544 56788999999999999888888 999999886 66888999999999999999999999987654
No 91
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.79 E-value=0.00045 Score=73.16 Aligned_cols=220 Identities=12% Similarity=0.127 Sum_probs=143.5
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
....++++.|.+..++.++. .|+.......-+. .+.+.|+.++|..+++.... ..++ +..++..+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaL------sl~r~gk~~ea~~~Le~~~~--~~~~---D~~tLq~l~~ 85 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALYAKVLKAL------SLFRLGKGDEALKLLEALYG--LKGT---DDLTLQFLQN 85 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHH------HHHHhcCchhHHHHHhhhcc--CCCC---chHHHHHHHH
Confidence 34578999999999999999 4544322222111 25799999999999887775 4443 3356666665
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
.+.. .+..++|..+++++.+.. |. ......+-.++.+.+++. .|.+++..+|.++..+-++++.+.....
T Consensus 86 ~y~d---~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 86 VYRD---LGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHH---HhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence 4444 899999999999998765 65 566666777777777664 5677889899998888887777665421
Q ss_pred ----------HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCcccHHHHHHHHhh--hc
Q 004922 237 ----------LVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--NA 302 (723)
Q Consensus 237 ----------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~ll~~--~~ 302 (723)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ...+.-...+...-+--+.. ..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 234666777776654 11122222222334567788999999993 33333222233333333332 33
Q ss_pred CChHHHHHHHHHHHHcC
Q 004922 303 HDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g 319 (723)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 67777777777777766
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=0.00026 Score=73.86 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=183.0
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---------CCccccc
Q 004922 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---------VAPLELF 150 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~ 150 (723)
.|...|+.+.|....+..... .++.++.+.+.+..+.+-|.-.+..|.... -.|+.
T Consensus 737 fyvtiG~MD~AfksI~~IkS~-------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-- 801 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD-------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-- 801 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh-------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--
Confidence 456678888887665544322 233556666778888887777766554321 11211
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC--CcchHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNFV 228 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l~ 228 (723)
.. ++.+.-..+.|..++|..+|++-.. +..+-+.|...|.+++|.++.+.-.. -..+|+.-.
T Consensus 802 ~e------akvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 802 DE------AKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred hh------hHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 11 1222222347999999999998665 33456778889999999998765432 236788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----------cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 229 REFGKKRDLVSALRAYDASKK----------HL---------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
..+..+++.+.|++.|++... .. -..|...|......+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 888888999999988876421 11 012344455555555566777777777765542
Q ss_pred cHHHHHHHHh--hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc----cccH
Q 004922 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL----KLDV 363 (723)
Q Consensus 290 ~~~~~~~ll~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~----~~~~ 363 (723)
|-++++ ++.|+.++|-++-++- .|....-.|.+.|-..|++.+|...|-+.......-.+ ..+.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334444 3447777776665542 35555556778888888888888877766542100000 0011
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcC--CCCCH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------EMLQAG--CEPNS 433 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~--~~~~~ 433 (723)
..+|..+ .....+.-.|-++|++. |.. +..-+..|-+.|.+.+|+++-= +++... -..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1111110 11222233333344332 111 1222334566666666665421 112222 23466
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
...+.-.+-++...++++|..++....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666677777777777777765443
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.1e-08 Score=62.05 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004922 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (723)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=8.6e-05 Score=75.97 Aligned_cols=198 Identities=14% Similarity=0.033 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH-HH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN-SL 297 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~l 297 (723)
...+..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+. .+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34455555556666666666655555443221 1222 112222334556677777777777766552 11222222 11
Q ss_pred Hhh----hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 298 MNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 298 l~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
... ..+....+.+.+.. .....|+ ......+...+...|++++|...+++.... .+.+...+..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i 157 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHV 157 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHH
Confidence 111 12333334444433 1111222 233334455666777777777777777662 22334556667777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 373 FADAKWWQMALKVKEDMLSAGVT-PNT--ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~-p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
+...|++++|...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777777776654321 222 2344566667777777777777777643
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.4e-05 Score=70.56 Aligned_cols=186 Identities=13% Similarity=0.051 Sum_probs=130.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+.+..++.+|++++..-.+. .|... ..++++...+.. ..++..|-++++++.... |.-..+-..-.+.+-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er--~p~~r---AgLSlLgyCYY~---~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER--SPRSR---AGLSLLGYCYYR---LQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc--Cccch---HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 46788999999999887764 33222 234444443333 688999999999987654 655555556677778
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVR----EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
+.+.+..|+++...+.+++...+..++ ..-..+++..+..+.++.... -+..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888999999998888776555444332 223567888888888876642 3445555555566788999999999
Q ss_pred HHHHHhCCCcccHHHHHHHHhhhc-CChHHHHHHHHHHHHcCCC
Q 004922 279 YEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVM 321 (723)
Q Consensus 279 ~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~ 321 (723)
|+...+-|--.....||..+.-+. +++..|++...+++.+|++
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999887644444566776666554 7889999999999888754
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=6.4e-05 Score=68.83 Aligned_cols=322 Identities=8% Similarity=-0.004 Sum_probs=147.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH---HHHhhhc
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNA 302 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~ 302 (723)
+.+..+.+..++.+|++++....++.. .+......+...|-...++..|-..|+++-.. .|...-|. +---..+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 334444445555555555554444211 13444555555555555555555555555443 22221111 1111122
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHH--HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+.+.+|+++...|.+. ++...-..-+. .....+++..+..+.++... ..+..+.+.......+.|+++
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------ENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-------CCccchhccchheeeccccHH
Confidence 3445555555554431 11111111111 11233455555555554431 123333333444445556666
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH-------------
Q 004922 381 MALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-------------PNS------------- 433 (723)
Q Consensus 381 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~------------- 433 (723)
+|.+-|....+- |.. ....|+.-+ +..+.|+++.|++...++.++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 666666555543 333 334444333 233445556666666655555431 111
Q ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 434 --QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 434 --~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
..+|.-...+.+.++.+.|.+.+-.|..... .
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE----------------------------------------------~ 273 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE----------------------------------------------E 273 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc----------------------------------------------c
Confidence 1122222334567778877777766543221 1
Q ss_pred CcCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 004922 512 KPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTA 589 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 589 (723)
..|++|...+.-.-. +++....+-+.-+..... -...||..++-.|||..-++.|-.++.+-...-.+ .+...|+.+
T Consensus 274 elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred cCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH
Confidence 345555544332222 223233333333344332 23568889999999999999999887654322111 234444433
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004922 590 IKVCVRSKRLKQAFSLFEEM 609 (723)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m 609 (723)
=...-..-..++|.+-++.+
T Consensus 353 daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 22222344566666555544
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.4e-08 Score=59.94 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004922 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (723)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 575 (723)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00027 Score=82.36 Aligned_cols=374 Identities=11% Similarity=0.065 Sum_probs=224.2
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
.+..+...|++.+|.......++..... ......+...|+++.+..+++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 4455666777777777666665543222 2233445567888887777766532111122223344455567789999
Q ss_pred HHHHHHHHHHhC--CC----cccHH----HHHHHHhhhcCChHHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCC
Q 004922 274 KSRAIYEDLRSQ--NV----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGN 339 (723)
Q Consensus 274 ~a~~~~~~m~~~--g~----~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~ 339 (723)
++...+...... .. .+... ...+.+....|+++.|...+++....-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 999999877543 10 11111 11122233558999999999887653111121 234556667788999
Q ss_pred hHHHHHHHHHHHhhhhc-CCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 004922 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~-g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~ 411 (723)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999988764322 111112234566677788999999999998887642 211 1 223445566677788
Q ss_pred CCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcc
Q 004922 412 GLVEQAMHLFEEMLQA--GCEP--NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~--~~~~--~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (723)
|++++|...+.+.... ...+ ....+..+...+...|+.+.|.+.+..........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------------------- 645 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------------------- 645 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------------------
Confidence 9999999999887653 1112 23344445667778999999999988775421100
Q ss_pred ccccCCCCCcCCCCccccccccCCCcCH-HHH---HHHHHHHhhcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 004922 488 QSITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPN---HISWTILIDACGG 560 (723)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~---~~ll~~~~~~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 560 (723)
+..... ... ........++.+.+...+........... ...+..+...+..
T Consensus 646 ----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 646 ----------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ----------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000 000 11111122466777777655443211111 1113456677888
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004922 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (723)
.|+.++|..++++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 33322 2456666678889999999999999988643
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.8e-06 Score=84.96 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=158.1
Q ss_pred CCcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccc
Q 004922 51 TVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRID 130 (723)
Q Consensus 51 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 130 (723)
.++.+++.|..++..+|.. ..+|..|...-+.+++=..|+..++++++. +|+....+.. +...|...|.-.
T Consensus 300 ~L~~A~LafEAAVkqdP~h-aeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLma------LAVSytNeg~q~ 370 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQH-AEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMA------LAVSYTNEGLQN 370 (579)
T ss_pred CchHHHHHHHHHHhhChHH-HHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHH------HHHHHhhhhhHH
Confidence 3566777788889999999 999999999999999999999999999999 8886554444 455599999999
Q ss_pred hHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHH
Q 004922 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (723)
Q Consensus 131 ~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (723)
+|+.+|+..++. .|... .+.. -...++++.- ..+.+......+...|.
T Consensus 371 ~Al~~L~~Wi~~--~p~y~-------~l~~----a~~~~~~~~~-----------~s~~~~~~l~~i~~~fL-------- 418 (579)
T KOG1125|consen 371 QALKMLDKWIRN--KPKYV-------HLVS----AGENEDFENT-----------KSFLDSSHLAHIQELFL-------- 418 (579)
T ss_pred HHHHHHHHHHHh--Cccch-------hccc----cCccccccCC-----------cCCCCHHHHHHHHHHHH--------
Confidence 999999988774 22110 0000 0000110000 00011111111111111
Q ss_pred HHHhhhCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 211 IRYACIVP--RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 211 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
+.....| .++.+...|.-.|--.|++++|++.|+..+. +.| |...||.|...++...+.++|++.|++.++.
T Consensus 419 -eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-- 493 (579)
T KOG1125|consen 419 -EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-- 493 (579)
T ss_pred -HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--
Confidence 0011112 4567777777778888888888888888776 345 5667888888888888888888888877764
Q ss_pred cccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc-----cc
Q 004922 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-----KL 361 (723)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~-----~~ 361 (723)
.|+ +.+.-.|.-.|...|.+++|.+.|-.+..+.+.+.- .+
T Consensus 494 ---------------------------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~ 540 (579)
T KOG1125|consen 494 ---------------------------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMA 540 (579)
T ss_pred ---------------------------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcc
Confidence 333 223334666777888888888887777766544211 11
Q ss_pred cHHHHHHHHHHHHccCCHH
Q 004922 362 DVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~ 380 (723)
+...|.+|=.++.-.++.+
T Consensus 541 se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 541 SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hHHHHHHHHHHHHHcCCch
Confidence 2234555544444444444
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2e-06 Score=85.94 Aligned_cols=249 Identities=13% Similarity=0.029 Sum_probs=157.0
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 004922 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (723)
.+.-+.+.|+..+|.-.|+.. |....+|.-|.......++-..|+..+.+..+... -|..+.-+|.-.|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 333444444454444444432 34445666666666666666666666666666321 2556666666667777766
Q ss_pred HHHHHHHHHHHhCCCc--------ccHHHHHHHHhhhc--CChHHHHHHHHHHHH-cCCCcChhhHHHHHHHHHHcCChH
Q 004922 273 MKSRAIYEDLRSQNVT--------LNIYVFNSLMNVNA--HDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTV 341 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~ 341 (723)
.+|+.+++.-+...++ ++...-+. .... ..+....++|-++.. .+..+|+.+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 6777666665443210 00000000 0001 123445566666644 344578888888888888899999
Q ss_pred HHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMH 419 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~ 419 (723)
+|...|+.... ++|+ ..+||.|...++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.+.+|.+
T Consensus 448 raiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 448 RAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999887 5554 557999999999999999999999999886 444 4456667778889999999988
Q ss_pred HHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 420 LFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 420 ~~~~~~~---~------~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
.|-..+. . +..++..+|..|=.++.-.++.|.+.+..
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8765543 2 12234566777666666677777555554
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.00021 Score=83.24 Aligned_cols=233 Identities=10% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---cccH--HHHH--H
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFN--S 296 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~---~~~~--~~~~--~ 296 (723)
...+...|++++|...++.........+ ....+.+...+...|++++|...+++.....- .+.. ..+. +
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3445567777777777777654211112 12445566666777888888777777654211 0111 1111 1
Q ss_pred HHhhhcCChHHHHHHHHHHHH----cCCC--c-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (723)
.+....|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+................+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 122344777777777666543 2211 1 22334455566777899999999988876543222111123344556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPN---SQCCNILL 440 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 440 (723)
...+...|++++|.+.++......... ....+ ...+..+...|+.+.|..++........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667778889999888888775421110 10111 1112334456777777777665443211111 01123445
Q ss_pred HHHHHhCCHHHHHHHHHHhh
Q 004922 441 QACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 441 ~~~~~~g~~~~a~~l~~~~~ 460 (723)
.++...|+.++|...++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666677777777665543
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.0015 Score=65.52 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+.++|.+.++++.+...|.+...- ..+. ..+.+....++++...+...-.++.. ..-...=...+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte------~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~F 369 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTE------HRTP-------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAF 369 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhh------hcCH-------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHH
Confidence 445666778888888888876541 1111 12333444555555555554433332 112222366777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+.|++..|+..+.++++.. +-|...|....-+|.+.|.+..|+.-.+...
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8889999999999888875 5577788888888888888888877655444
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0028 Score=68.13 Aligned_cols=195 Identities=8% Similarity=-0.001 Sum_probs=97.9
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh-hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF-KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~-~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
+..+.++...+-+.+-+++++++. +.|+.+..+.-+ ++|+-.+. ..+.....++.+++-..+. .
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIv---L~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyDa--------~ 1052 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIV---LDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYDA--------P 1052 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHh---cCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCCc--------h
Confidence 445667788888999999999988 566555443333 33332222 2444555666665543331 1
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
.++..+...+-+++|..+|+++..+..+...|+.- -+..+.|.+.-++..+ ...|..+..+-.+.|...+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~n~------p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERCNE------PAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhhCC------hHHHHHHHHHHHhcCchHHH
Confidence 24555666667777777777765544444444432 2344444444333321 23445555555555555555
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHH
Q 004922 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (723)
Q Consensus 276 ~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A 343 (723)
++-|-+. .|...|.-++.... |.+++-.+.+....+..-+|... +.|+-+|++.+++.+.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHH
Confidence 5444321 23444444444322 44555444444444433333322 2344455555554443
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=0.0005 Score=73.57 Aligned_cols=358 Identities=10% Similarity=-0.045 Sum_probs=211.1
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhh---HHHHhhHHHHHhHHHhhhccCccchHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK---FASMLSLEMVASGIVKSIREGRIDCVVGV 135 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (723)
|..+...|++. .......+..|++...++.|..+.-..-+. .|-. ++++. .+. .|...++...|+..
T Consensus 515 f~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~-rG~------yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 515 FDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ-RGP------YYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-ccc------cccCccchhhHHHH
Confidence 66667888888 888999999999999999999985444333 3221 22211 333 37899999999999
Q ss_pred HHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 136 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
|+...+ ..|.+. ..+..+..++. ++|++..|+++|.++...+ |.+...-+-.....+..|++.+|+..+.
T Consensus 585 fQsALR--~dPkD~---n~W~gLGeAY~---~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 585 FQSALR--TDPKDY---NLWLGLGEAYP---ESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHhc--CCchhH---HHHHHHHHHHH---hcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999997 577544 34555555444 4999999999999987755 7665555556666777899999988776
Q ss_pred hCC-----------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004922 216 IVP-----------RADILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRA 277 (723)
Q Consensus 216 ~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~ 277 (723)
..- .-..++-.+...+...|-...|...++.-++. ....+...|-.+. .|..
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~ 724 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACY 724 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHH
Confidence 631 11123333333444445555555555554331 1111222222222 2233
Q ss_pred HHHHHHhCCCcccHHHHHHHHhhhc--C---ChH---HHHHHHHHHHHcCCCcChhhHHHHHHHHHH----c----CChH
Q 004922 278 IYEDLRSQNVTLNIYVFNSLMNVNA--H---DLK---FTLEVYKNMQKLGVMADMASYNILLKACCL----A----GNTV 341 (723)
Q Consensus 278 ~~~~m~~~g~~~~~~~~~~ll~~~~--~---~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~----~~~~ 341 (723)
+|-+.. -. .|+......+..-.. + +.+ .+.+.+-.-.+ ...+..+|..|...|.+ . .+..
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 333332 11 233333333332111 0 111 01111111111 12234455555544443 1 2334
Q ss_pred HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
.|...+.+..++ ...+..+|+.|.-. ...|.+.-+.-.|-+-....+. ...+|..+.-.+.+..+++.|...|
T Consensus 801 ~Ai~c~KkaV~L-----~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-----CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred HHHHHHHHHHHH-----hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHH
Confidence 677778777764 23455677776655 6667787777777776655433 6778888888888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
....... +.+...|--..-.....|+.-++..+|..
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8887653 33444444444444466777777777765
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=1.3e-05 Score=77.53 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=118.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHhhhcC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAH 303 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~~~ 303 (723)
+.++|...|+++.++ .++... ..|.......+...+...++-+.++.-+++....+...+. ....+.+....|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 455666666655433 233222 2355545544444443334445555555444333222111 122222223446
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH---HHHHHHHHHccCCHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQ 380 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~---~~~ll~~~~~~g~~~ 380 (723)
++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+ ...|... ..+.+..+.....+.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 666666666432 3555666677788888888888888888876 2333322 222233333344678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~l~~~~ 459 (723)
+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++-+....|+. +.+.+.+..+
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888887654 45677777788888888888888888887776543 34566666677766777776 4555666655
Q ss_pred hh
Q 004922 460 TL 461 (723)
Q Consensus 460 ~~ 461 (723)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=1.3e-05 Score=76.28 Aligned_cols=193 Identities=8% Similarity=-0.046 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+...|++++|...+++++.. .|.... ...++..+...+...|++++|+..++++.+ ..|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCc
Confidence 667788889999999999999999999888 443221 122234455568899999999999999997 4554332
Q ss_pred ccchhhhhHHHHHHh-----hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 151 DGSGFKLLKNECQRL-----LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
....+..+...+... .+.|++++|++.|+.+.... |++...+..+...... .... .....
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~----~~~~---------~~~~~ 170 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYL----RNRL---------AGKEL 170 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHH----HHHH---------HHHHH
Confidence 111222222211110 12378999999999998765 5544333322221110 0000 01223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+...|.+.|++++|...|....+.... | ....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5777899999999999999998875321 2 3578899999999999999999999988765
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0019 Score=64.69 Aligned_cols=208 Identities=9% Similarity=0.007 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
-+++..+++.....-..-+..+|..+.+.-...- ..+....++++++..-..--..+|...+..-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3456666665554322334445544443222222 2566667777776643222234577777777788888899999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~ 534 (723)
|.+..+.+. ..-++..++++|.-+| ++..-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 988776543 1237888899999887 58888999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
+|+-=.+. ..-+..--...++-+.+.++-..|..+|++....++.|| ...|..+|.-=..-|+...+.++-+++...
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 98865543 222334445667788888999999999999998866665 468999999888899999999998887632
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCC
Q 004922 613 ---QIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 613 ---g~~p~~~~~~~ll~~~~~~g~ 633 (723)
...|.-.+-..+++-|.-.+.
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccc
Confidence 123333344445555544444
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=4.8e-06 Score=80.45 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=129.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
|.|++..++.-.+ .....-..+......+.+++...|+++.+. .++.. + -.|.......+...+....+-+
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK----S-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T----T-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc----C-CChhHHHHHHHHHHHhCccchH
Confidence 4455555554333 111111122333444566777777665433 22221 2 2455554444444333334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNTITW-SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+..-+++.......++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454444443333222222222 22233455667777777776542 35566667777788888888888877776
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh----h--cHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----T--DYYRVK 533 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~----~--~~~~a~ 533 (723)
... ..|. +...+..++. + ....|.
T Consensus 158 ~~~-------------------------------------------------~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 158 QQI-------------------------------------------------DEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HCC-------------------------------------------------SCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred Hhc-------------------------------------------------CCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 542 2222 2222333322 1 356777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 004922 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMKH 611 (723)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 611 (723)
.+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .-+..+...+|.+....|+. +.+.+++.++..
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777776554 45677788888888888888888888888876543 22456666677777777776 667777777765
No 109
>PLN02789 farnesyltranstransferase
Probab=98.44 E-value=8.2e-05 Score=72.98 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
++++..++.+.+... -|..+|+....++...|+++++++.++++++..
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 455666666665322 356667766666666777777777777766653
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.42 E-value=0.0038 Score=64.66 Aligned_cols=266 Identities=12% Similarity=0.131 Sum_probs=152.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
...|......+-+..+++.|+..|.+--.-| +....+........+ ......+.+.|+++.|+.-|-++.-
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 3455555566666666777776665422221 011111110000000 1223334567777777766643331
Q ss_pred cccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHH
Q 004922 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (723)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (723)
++++..+......|..|+.+++-+..... ..-+|..+..-|...|+++.|+++|-.. ..++.-
T Consensus 735 ----------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~da 797 (1636)
T KOG3616|consen 735 ----------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDA 797 (1636)
T ss_pred ----------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHH
Confidence 23333333346889999999988766542 3456777888899999999999988764 456778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (723)
|.+|.+.|+|++|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+-. |+... -|.-..|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~ai---qmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDKAI---QMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chHHH---HHHHhhCcchH
Confidence 8999999999999988777643 334556677777777888888888887754321 22110 01111123333
Q ss_pred HHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
.+++..+- .|+ ..|...+..-|...|++..|.+-|-+... |.+-++.|-..+.|++|.++
T Consensus 869 mirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 869 MIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------------HHHHHHHhhhhhhHHHHHHH
Confidence 33333221 122 23444556666677777777766654432 34445556666666666554
Q ss_pred H
Q 004922 386 K 386 (723)
Q Consensus 386 ~ 386 (723)
-
T Consensus 931 a 931 (1636)
T KOG3616|consen 931 A 931 (1636)
T ss_pred H
Confidence 4
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=3.2e-05 Score=70.50 Aligned_cols=147 Identities=8% Similarity=0.038 Sum_probs=113.0
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHH
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (723)
-.+..|...|+++.+....+.+.. |.. . +...++.++++..++..++.. |++...|..+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~~-----~----------~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~L 79 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PLH-----Q----------FASQQTPEAQLQALQDKIRAN--PQNSEQWALL 79 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----ccc-----c----------ccCchhHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 345568899999887655533321 210 0 011577788888899888866 8899999999
Q ss_pred HHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 004922 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (723)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (723)
+..+...|+++.|...++.+ |++..++..+..+ +...|+ .++|.+++++..+.+. .+..++..+...+.+.|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcC
Confidence 99999999999999888774 7778888888886 467677 5899999999888543 36778888888899999
Q ss_pred CHHHHHHHHHHHHhCC
Q 004922 271 DYMKSRAIYEDLRSQN 286 (723)
Q Consensus 271 ~~~~a~~~~~~m~~~g 286 (723)
++++|+..|+.+.+..
T Consensus 159 ~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 159 DYAQAIELWQKVLDLN 174 (198)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988764
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00011 Score=81.07 Aligned_cols=222 Identities=11% Similarity=0.039 Sum_probs=144.7
Q ss_pred CcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccch
Q 004922 52 VHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC 131 (723)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (723)
.|.++..|.+.++.+|++ ...|...++...+.++.+.|..++++++.. ++++.-..- +..+..++.....-|.-+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEK--LNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEK--LNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHH--HHHHHHHHhHHHhhCcHHH
Confidence 344555688888899999 888889999999999999999999998776 333221111 1222222233344566677
Q ss_pred HHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHH
Q 004922 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (723)
Q Consensus 132 A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (723)
..++|+++-+ +...+..+..++..|...+.+++|.++|+.|.+.-- .....|...+..+.++++-+.|.
T Consensus 1516 l~kVFeRAcq---------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1516 LKKVFERACQ---------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHH---------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHH
Confidence 7888888876 223455566666666668889999999999886542 34455666677777777666666
Q ss_pred HHhhh----CCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 212 RYACI----VPRA--DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 212 ~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.++.. +|.. .......++.-.+.|+.+.++.+|+......+ --...|+..++.-.+.|+.+.+..+|++....
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66544 3442 23344455555666777777777777665422 23556777777777777777777777777766
Q ss_pred CCcc
Q 004922 286 NVTL 289 (723)
Q Consensus 286 g~~~ 289 (723)
++.|
T Consensus 1664 ~l~~ 1667 (1710)
T KOG1070|consen 1664 KLSI 1667 (1710)
T ss_pred CCCh
Confidence 5544
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0045 Score=62.19 Aligned_cols=423 Identities=12% Similarity=0.040 Sum_probs=207.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|+++.|+.+|-..+... |.+...|+.-..+++..+++++|.+-..+ -|.=+..|+.+..++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3799999999999988755 88999999999999999999999876544 35555788999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC---CcccHHHHHHHHhhhcC---------ChHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMK---SRAIYEDLRSQN---VTLNIYVFNSLMNVNAH---------DLKF 307 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---------~~~~ 307 (723)
-|.+-++.. +.|...++-+..++.......+ --.++..+.... .......|..++..... ....
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999988743 2366677778777621100000 001111111100 00111223333332111 1111
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCCh----HHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCL-AGNT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~----~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a 382 (723)
..+....+...+.. .+...-..... .... ..............+ ..--..-...+.++..+..+++.|
T Consensus 171 ~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 171 LMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred HHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHHHHHHhhhHHHH
Confidence 11111111110000 00000000000 0000 000000000000000 001112233444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHhCCHHHHHHH
Q 004922 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-------CNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~g~~~~a~~l 455 (723)
.+.+....... -++.-++....+|...|++.+....-+...+.|.. ...- +..+-.+|.+.++.+.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 55555554433 13333344444455555444444443333333211 1111 11122244444555555555
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHH--HHHHHHHHHh-hcHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT--TYNILMKACC-TDYYRV 532 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~-~~~~~a 532 (723)
|.+.......++.. ......+...+. .....-+.|... ....-..++. +++..|
T Consensus 321 ~~kaLte~Rt~~~l-------s~lk~~Ek~~k~----------------~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL-------SKLKEAEKALKE----------------AERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHhhhhcCHHHH-------HHHHHHHHHHHH----------------HHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 55433322111000 000000000000 000000122221 1111112222 478889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..-|.++++.. +-|...|....-+|.+.|.+..|+.=.+..++. .|+ ...|.-=..++....++++|.+.|++..+
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998875 447788999999999999999999888877764 444 33344444455556678888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 004922 612 YQIQPNLVTYITLLRARSR 630 (723)
Q Consensus 612 ~g~~p~~~~~~~ll~~~~~ 630 (723)
. .|+..-+..-+.-|..
T Consensus 455 ~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 L--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred c--CchhHHHHHHHHHHHH
Confidence 4 4766665555555555
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0078 Score=64.86 Aligned_cols=373 Identities=12% Similarity=0.081 Sum_probs=172.9
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC-CcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
+...+.-.+++.. .+-+.+-++++++++-.... ......-+.++-. +-.-+.....++.+++.. .---.+...
T Consensus 984 Pe~vS~tVkAfMt---adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdn--yDa~~ia~i 1057 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMT---ADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDN--YDAPDIAEI 1057 (1666)
T ss_pred hHHHHHHHHHHHh---cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhcc--CCchhHHHH
Confidence 3445555565555 67777778888777643211 1111111111111 111222223333333211 111123334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFT 308 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a 308 (723)
....+-+++|..+|+... .+..+.+.|+. .-+..++|.+.-++.. ....|..+-.+ ..+...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 444555666666665532 34444444443 2345555555444332 12334444333 22344444
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
.+-|=+ ..|+..|.-+++...+.|.+++-.+.+...++. . -.| ..=+.|+-+|++.++..+.++...
T Consensus 1124 ieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~-~E~--~id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1124 IESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---V-REP--YIDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred HHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---h-cCc--cchHHHHHHHHHhchHHHHHHHhc-
Confidence 443322 135555666666666666666666655554441 1 112 223455555666666555444331
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhccccc
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~ 468 (723)
.|+......+.+-|...+.++.|.-+|.... -|..+...+...|++..|.+.-++
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK---------- 1245 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK---------- 1245 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 3455555555666666666666555554332 244455555555666555554433
Q ss_pred CCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCH
Q 004922 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNH 548 (723)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~ 548 (723)
.-+..||-.+-.+|....+ --+-+|-..++-...
T Consensus 1246 -------------------------------------------Ans~ktWK~VcfaCvd~~E---FrlAQiCGL~iivha 1279 (1666)
T KOG0985|consen 1246 -------------------------------------------ANSTKTWKEVCFACVDKEE---FRLAQICGLNIIVHA 1279 (1666)
T ss_pred -------------------------------------------ccchhHHHHHHHHHhchhh---hhHHHhcCceEEEeh
Confidence 2334555555555542111 001122222222334
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 628 (723)
.-..-++..|-..|-+++-+.+++...... +...-.|+.|.-.|.+- ++++..+-++-. .+..-.-.+++++
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LF------wsRvNipKviRA~ 1351 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLF------WSRVNIPKVIRAA 1351 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH------HHhcchHHHHHHH
Confidence 445667777777888887777776654211 12334566665555543 333333322222 1222234566776
Q ss_pred HhcCChHH
Q 004922 629 SRYGSLHE 636 (723)
Q Consensus 629 ~~~g~~~~ 636 (723)
-...-|.+
T Consensus 1352 eqahlW~E 1359 (1666)
T KOG0985|consen 1352 EQAHLWSE 1359 (1666)
T ss_pred HHHHHHHH
Confidence 55554444
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.0005 Score=71.21 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=178.5
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+|-...-..+...+...|-..+|..+|++. ..|..+|.+|+..|+.++|..+..+..+. +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333344556777888899999999999875 45788899999999999999999888874 8899999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHH
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (723)
.+.....--+++|.++.+....... ..++
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~---------------------------------------------------r~~~ 492 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQ---------------------------------------------------RSLA 492 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHH---------------------------------------------------Hhhc
Confidence 9887777778888888876543210 0000
Q ss_pred HHHHHH-hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 004922 520 ILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSK 597 (723)
Q Consensus 520 ~ll~~~-~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 597 (723)
-. .+ .++++++.+-|+.-.+.. +--..+|-.+..+..+.++++.|.+.|..... +.|| ...||.+-.+|.+.|
T Consensus 493 ~~--~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 493 LL--ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred cc--cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHh
Confidence 00 11 135667777776665532 12456777777888889999999999988886 3666 568999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhh
Q 004922 598 RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVI 671 (723)
Q Consensus 598 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~ 671 (723)
+..+|...+++..+.. .-+...|.-.+....+.|.+++|.+|..-+-.|.+.+- |......++....++..
T Consensus 568 ~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~--d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK--DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc--cchhhHHHHHHHHhhcc
Confidence 9999999999998876 55667777778888889998887776555555555554 66666777777766444
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00013 Score=66.29 Aligned_cols=168 Identities=11% Similarity=-0.007 Sum_probs=118.5
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
+-|.+..+ ..+...+...|+-+....+....... .+.|....+..+....+.|++.+|...|++.....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--------- 130 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--------- 130 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---------
Confidence 33555555 55666666777777776666664432 22355566667777777777777777777766431
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
++|...|+.+.-+|.+.|+++.|..-|.+..++ ..-+...++.+.-.|.-
T Consensus 131 -------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L 180 (257)
T COG5010 131 -------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLL 180 (257)
T ss_pred -------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHH
Confidence 677888888888888888888888888888774 23345567777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.|+++.|..++......+.. |...-..+.......|++++|..+...-.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 88888888888888766543 66777777778888888888887776544
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00021 Score=78.30 Aligned_cols=237 Identities=9% Similarity=0.044 Sum_probs=146.5
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
.+|+. ...+..|+..+...|++++|.++++..++. .|+.....+..+.+ +.+.+++.++..+ .+.. +
T Consensus 26 ~~p~n-~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l------~~q~~~~~~~~lv--~~l~--~ 92 (906)
T PRK14720 26 YSLSK-FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGIL------SLSRRPLNDSNLL--NLID--S 92 (906)
T ss_pred CCcch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHH------HHhhcchhhhhhh--hhhh--h
Confidence 44666 888889999999999999999999988877 66655444444333 6677776665555 3332 1
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchH
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (723)
.+. ..++.-...+...+... +.+..++
T Consensus 93 ~~~--------------------~~~~~~ve~~~~~i~~~---------------------------------~~~k~Al 119 (906)
T PRK14720 93 FSQ--------------------NLKWAIVEHICDKILLY---------------------------------GENKLAL 119 (906)
T ss_pred ccc--------------------ccchhHHHHHHHHHHhh---------------------------------hhhhHHH
Confidence 111 22332222233333321 2233566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHHHHHHh
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMN 299 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~ll~ 299 (723)
..++.+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|+.. ++++|.+++.+.+..-+. .=...|.-++.
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence 777778888888888888888887755 24677788888888777 888888887777654210 01122333333
Q ss_pred hhcCChHHHHHHHHHHHHc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 300 VNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
.-..+++.-.++.+.+... |..--..++--+-..|-..++++++..+++.+... -+.|.....-++.+|.
T Consensus 198 ~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-----~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 198 YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH-----DNKNNKAREELIRFYK 268 (906)
T ss_pred cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-----CCcchhhHHHHHHHHH
Confidence 3334555555555555543 33334455666667777888899999999988873 2335556666666665
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00033 Score=72.51 Aligned_cols=214 Identities=11% Similarity=0.067 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
-..++..+...|-...|..+|++. ..|..++..|+..|+..+|..+..+-.+ -+|+...|..+.+......-++
T Consensus 401 q~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 344566667777777777777664 5577777777777777777777666555 2467777777777666666677
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004922 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 353 (723)
+|.++++..-.. ..-+-...-...+++.++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|.....
T Consensus 475 kawElsn~~sar-----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHHHhhhhhHH-----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 777777654332 01111111111356667777776665543 34455666666666677777777777777665
Q ss_pred hhcCCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 354 EAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 354 ~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
..||. ..||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 548 -----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 -----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34444 36777777777777777777777777776633 555566666666777777777777776654
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=5.9e-05 Score=81.74 Aligned_cols=115 Identities=3% Similarity=-0.098 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|+.+++.+.+.. |+.......++..+.+.+++++|...+++ .|++....+.+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 444444444444444433 44444444444444444444444443333 255556666677777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|+++...+ +-+..++..+...+.+.|+.++|...|+...+.
T Consensus 177 y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 177 FERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777622 124666777777777777777777777777654
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.26 E-value=0.00053 Score=75.99 Aligned_cols=226 Identities=10% Similarity=0.023 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
+...|-..|......++.++|.++++++..- +.+. ...|.++++.-..-|.-+...++|++..+.. . .
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~ 1529 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-A 1529 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-h
Confidence 3455666666666777777777777666541 1111 1245555555555566666666666666531 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchh
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
-..|..|...|.+.+++++|.++++.|.+.- .-...+|...++.+.+.++-+.|..++.+....-
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-------------- 1594 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-------------- 1594 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--------------
Confidence 2345666666666667777777777666642 2455566666666666666666666665544321
Q ss_pred hhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 557 (723)
|.. -......-.+..
T Consensus 1595 -----------------------------------Pk~------------------------------eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1595 -----------------------------------PKQ------------------------------EHVEFISKFAQL 1609 (1710)
T ss_pred -----------------------------------chh------------------------------hhHHHHHHHHHH
Confidence 000 011222333344
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChH
Q 004922 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLH 635 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~ 635 (723)
-.+.|+.+.+..+|+.....- +.-...|+..|+.=.++|+.+.+..+|++....++.|- ...|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 456666666666666665431 11345666666666666666666666666666655552 344555555444555543
Q ss_pred H
Q 004922 636 E 636 (723)
Q Consensus 636 ~ 636 (723)
.
T Consensus 1689 ~ 1689 (1710)
T KOG1070|consen 1689 N 1689 (1710)
T ss_pred h
Confidence 3
No 121
>PLN02789 farnesyltranstransferase
Probab=98.25 E-value=0.002 Score=63.43 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=73.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
..+...+..++|+.+..++.. +.|+. ..|+..-.++...| ++++++..++++.....+ +..+|+.....+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 334445566677777777665 23333 34555555555555 467777777777766544 4455655544455
Q ss_pred hcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 410 NAGLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 410 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+.|+. ++++.+++++.+.. +-+..+|+....++.+.|+++++++.+.++.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55542 55666666666553 446666776666666777777777777776654
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00099 Score=73.21 Aligned_cols=167 Identities=10% Similarity=0.093 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 333 (723)
+...+..|+..|...+++++|.++.+...+... .+....+..++....++.+.+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 455666677766677777777777665554411 123333333333333332222111 33444
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
.....++.-...+...+.. ..-+...+-.+..+|-+.|+.+++.++|+++++..+. |..+.|.+...|+.. +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 4444444444444444444 3345556777778888888888888888888877644 777888888888887 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+++|.+++.+.... +....++..+.++|.++..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 88888887776543 5556677777777777654
No 123
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=3.4e-05 Score=59.89 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC----h-HHHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGS----L-HEVQQCLAVYQDMWKAGYKANDTYL 659 (723)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~----~-~~a~~a~~~~~~m~~~g~~p~~~~~ 659 (723)
-...|..|...|++.....+|+.+++.|+ -|+..+|+.++.+.++..- . .+.-+.+.+|++|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 8999999999988876542 1 1456678899999999999999999
Q ss_pred HHHHHHHHhhhh
Q 004922 660 KELIEEWCEGVI 671 (723)
Q Consensus 660 ~~li~~~~~g~~ 671 (723)
+.++..+.+|.+
T Consensus 108 nivl~~LlkgSi 119 (120)
T PF08579_consen 108 NIVLGSLLKGSI 119 (120)
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=0.00021 Score=68.10 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..++..+...|++++|...|+++...... |. ..++..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 466778888899999999999999998874321 11 246778888899999999999999998875
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=2.1e-05 Score=67.66 Aligned_cols=119 Identities=5% Similarity=-0.096 Sum_probs=72.1
Q ss_pred hhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHH
Q 004922 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (723)
Q Consensus 60 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 139 (723)
.+++..+|+. +..+...+...|++++|...|+.++.. +|.....+.. +...+...|++++|+..|+++
T Consensus 17 ~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 17 KQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIA------LAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHH------HHHHHHHHhhHHHHHHHHHHH
Confidence 3446666665 334566777778888888888877777 5554443333 333367778888888888877
Q ss_pred hhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHH
Q 004922 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (723)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (723)
.+ +.|+.. .. +.+....+...|++++|+..|+..+... |+++..+...+.+
T Consensus 85 l~--l~p~~~---~a---~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~ 135 (144)
T PRK15359 85 LM--LDASHP---EP---VYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQNA 135 (144)
T ss_pred Hh--cCCCCc---HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 76 455332 22 2222223334678888888887777644 6665555544443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00089 Score=72.84 Aligned_cols=134 Identities=11% Similarity=-0.026 Sum_probs=102.0
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 399 (723)
..++..+-.|.......|.+++|..+++...+ +.||. .....+...+.+.+++++|+..+++.+...+. +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 44577777788888888888888888888877 44554 45677777888888888888888888877544 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
....+..++.+.|++++|..+|+++...+ +-+..++..+-.++.+.|+.++|...|+...+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777778888888888888888888742 344677777778888888888888888876653
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.16 E-value=0.00051 Score=62.64 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHH-HccCC--HH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~-~~~g~--~~ 380 (723)
+.+++...+....+.+ +.|...|..+...|...|++++|...|++...+ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4455566666665554 567888999999999999999999999999873 234566777777764 66676 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (723)
+|.+++++..+.++. +..++..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999988765 77888899999999999999999999998874 4444433
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00064 Score=61.73 Aligned_cols=243 Identities=12% Similarity=0.062 Sum_probs=126.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCCHHHHHH-HHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSALR-AYD 245 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~-~~~ 245 (723)
.|.+..++..-.... ..+.....-..+.++|...|.+..-..-......++ .+...+......-++.++-+. +.+
T Consensus 21 ~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 366665555443322 222445555566677776666543332221111111 112222222333344333333 333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChh
Q 004922 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~ 325 (723)
.+.......+......-...|...|++++|++.... |-..+....+.-+.....+.+.|.+.+++|.+. .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 444332223333333334457777888888777765 223344444444444555667777777777653 2444
Q ss_pred hHHHHHHHHH----HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 326 SYNILLKACC----LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 326 ~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
+.+.|..++. ..+.+.+|.-+|+++.+. ..|+..+.+-...++...|++++|..+++..+..... +..+.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 5554444444 334567777777777541 4567777777777777777777777777777766544 45555
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHH
Q 004922 402 SSLINACANAGLVEQ-AMHLFEEMLQ 426 (723)
Q Consensus 402 ~~li~~~~~~g~~~~-a~~~~~~~~~ 426 (723)
..++-+-...|...+ ..+.+.++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555544444444333 3344455444
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00035 Score=63.44 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=119.3
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
-..+...|+-+....+...... ..|... .....+++... ..|++.+|+..|++..... |++...|+.++.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~--~~~~d~---~ll~~~gk~~~---~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lga 142 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAI--AYPKDR---ELLAAQGKNQI---RNGNFGEAVSVLRKAARLA--PTDWEAWNLLGA 142 (257)
T ss_pred HHHHHhcccccchHHHHhhhhc--cCcccH---HHHHHHHHHHH---HhcchHHHHHHHHHHhccC--CCChhhhhHHHH
Confidence 3345677888887777766543 233221 23333444433 3899999999999998755 999999999999
Q ss_pred HHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
+|.+.|+.++|...|.+ .+.++...++|.-.|.-.|+++.|..++......+. -|..+-..+..+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 99999999999887665 588889999999999999999999999998877532 3677788888888999999999
Q ss_pred HHHHHHHHhC
Q 004922 276 RAIYEDLRSQ 285 (723)
Q Consensus 276 ~~~~~~m~~~ 285 (723)
..+...-...
T Consensus 222 ~~i~~~e~~~ 231 (257)
T COG5010 222 EDIAVQELLS 231 (257)
T ss_pred Hhhccccccc
Confidence 9887765443
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.2e-06 Score=51.83 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (723)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00042 Score=62.39 Aligned_cols=183 Identities=15% Similarity=0.079 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHHHHhc----CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 85 GRLEEFAMIVESVVVSE----GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 85 g~~~~A~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
.+.++..++...++... ..|+.| ..+..++.+....|+.+.|..+++.+... . |...-...+..++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w------~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~-- 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIW------TLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAML-- 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHH------HHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHH--
Confidence 45567777777665542 233333 33456667778899999999999998874 3 5433222222233
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH----hhhCCCCcchHHHHHHHHHhcCC
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY----ACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
+-..|++++|+++++.++..+ |.+...+-.-+.....+|+.-+|++. .+.++.|..+|..+...|...|+
T Consensus 96 ----lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 96 ----LEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred ----HHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 333799999999999999866 77777777777777778888788764 56688899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 285 (723)
+++|.-.++++.- +.| +...+..+...+...| +..-+...|.+..+.
T Consensus 170 f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 170 FEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999875 345 4444555555543333 556677777777765
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0027 Score=57.82 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..+++...... .-++.+..-++-.....|+.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 455555555555442 24455555555555555555555555555555432 22344444444444444443
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.5e-06 Score=50.23 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (723)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55556666666666666666666665555555
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=0.00027 Score=60.78 Aligned_cols=109 Identities=9% Similarity=-0.036 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
..+|++..+. .|+ .+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555543 233 3555677888899999999999988763 234667888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
....++. +...+..+..++.+.|++++|...|+...+.
T Consensus 84 Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9987543 7788888899999999999999999998876
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.2e-05 Score=49.25 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 581 (723)
.+|+.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.4e-05 Score=49.42 Aligned_cols=35 Identities=43% Similarity=0.716 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (723)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00034 Score=69.18 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|.+++|+..++.+++.. |+++.++...+..+...++.++|.+.++++ |.......++..+|.+.|++.+|++
T Consensus 318 ~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3588888888888877755 888888888888888889988888887774 6667777888888888999998888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHc
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (723)
+++...... +-|...|..|..+|...|+..++.....+... +.|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------------hCCCHHHHHHHHHHHHHh
Confidence 888877653 34778888888999888888888877766543 357777777777777654
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.94 E-value=0.03 Score=56.50 Aligned_cols=75 Identities=7% Similarity=0.087 Sum_probs=50.4
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+..+|+.+++-+..+ ..++....++. +|..+.+|..-+..-.+..+++...++|.+....- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67777777777766555 66666655554 46667777777777777788888888887776532 3555666666
Q ss_pred HH
Q 004922 264 DV 265 (723)
Q Consensus 264 ~~ 265 (723)
..
T Consensus 94 ~Y 95 (656)
T KOG1914|consen 94 SY 95 (656)
T ss_pred HH
Confidence 53
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.92 E-value=0.05 Score=58.45 Aligned_cols=467 Identities=11% Similarity=0.095 Sum_probs=257.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.+++..|.....++.+.. |+....-..-+-...+.|+.++|..+++.. +.+..+...+-..|.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 689999999999988766 544333333333466899999999887764 44668888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc----C--------ChHHHHHH
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFTLEV 311 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----~--------~~~~a~~~ 311 (723)
|++.... -|+......+..+|.+.+.+.+-.+.--+|-+. ++-+.+.|-++++... + -...|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998874 467777777777888888776544444444332 2234455444444321 1 13457778
Q ss_pred HHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 312 YKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 312 ~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
++.+.+.+ ..-+..-....+..+...|++++|.+++..-.. .-....+...-+.-+..+...++|.+..++-.++.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la---~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA---EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88887654 222333333445566678999999998843221 11123344455667788889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HhCCHHH
Q 004922 391 SAGVTPNTITWSSLINACAN----------------AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV---EACQFDR 451 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~g~~~~ 451 (723)
..|.. | |...+..+++ .+..+...+...+..... ....|-+-+.++. ..|+.++
T Consensus 254 ~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 254 EKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHH
Confidence 87643 3 3333332221 122222333333222221 1112333333333 3466666
Q ss_pred HHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc-ccCCCcCH---------HHHHHH
Q 004922 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK-RFSFKPTT---------TTYNIL 521 (723)
Q Consensus 452 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~---------~~~~~l 521 (723)
+.-.|-+-- +..+....+.......+..... ..++. ..+..++. ++.+..
T Consensus 327 ~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~------------------~~l~~~l~~~~~~~s~~~k~l~~h~c~l~ 386 (932)
T KOG2053|consen 327 MLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQL------------------KSLMSKLVLADDDSSGDEKVLQQHLCVLL 386 (932)
T ss_pred HHHHHHHHh--CCCcHhHhhHHHhhccCCHHHH------------------HHHHHHhhccCCcchhhHHHHHHHHHHHH
Confidence 544432211 1111000000000000000000 00000 00011221 223333
Q ss_pred HHHHhh-----cHHHHHHHHHHHH---HcC------CCCCHHH---------HHHHHHHHHcCCCHH---HHHHHHHHHH
Q 004922 522 MKACCT-----DYYRVKALMNEMR---TVG------LSPNHIS---------WTILIDACGGSGNVE---GALQILKIMR 575 (723)
Q Consensus 522 l~~~~~-----~~~~a~~l~~~m~---~~~------~~p~~~~---------~~~li~~~~~~g~~~---~A~~~~~~m~ 575 (723)
+...++ +.+....++.+.. +.| +-|+..+ -+.|++.|-+.++.. +|+-+++.-.
T Consensus 387 ~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl 466 (932)
T KOG2053|consen 387 LLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL 466 (932)
T ss_pred HHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 333333 1233333332222 223 3334333 367888888888765 4555555544
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCC
Q 004922 576 EDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (723)
Q Consensus 576 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p 654 (723)
.. .|. ..+=-.+|..|+..|-+..|.++|+.|--..|+-|..-|..+ +-+.-.|++..+...+.-.-.+-....
T Consensus 467 t~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy~~~~-- 541 (932)
T KOG2053|consen 467 TK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFYDSSL-- 541 (932)
T ss_pred hc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHHhhhh--
Confidence 43 333 334456778999999999999999999876777776666543 445567777766553333333333333
Q ss_pred CHHHHHHHHHHHHhhhhhhhh
Q 004922 655 NDTYLKELIEEWCEGVIQDKN 675 (723)
Q Consensus 655 ~~~~~~~li~~~~~g~~~~a~ 675 (723)
..+-..+..+|-.|.+....
T Consensus 542 -kE~~eyI~~AYr~g~ySkI~ 561 (932)
T KOG2053|consen 542 -KETPEYIALAYRRGAYSKIP 561 (932)
T ss_pred -hhhHHHHHHHHHcCchhhhH
Confidence 33556667777766444433
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00073 Score=57.76 Aligned_cols=118 Identities=8% Similarity=0.020 Sum_probs=86.7
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 311 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
.|+...... +.+......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 223455666777888899999999999888763 23466778888888889999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
..+.. +...+..+...+...|++++|...|+...+. .|+...+.
T Consensus 79 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPD-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred hcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 76533 6677777888889999999999999888875 35444433
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.016 Score=52.60 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHHHHhhhcCChHH
Q 004922 234 KRDLVSALRAYDASKKH---L-SSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~ 307 (723)
..+.++.++++.++... | ..++.++ |..+.-+....|+.+-|...++++...=. .+.+.-..+++---.+.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45778888888777642 3 4456554 55666677788999999999998877621 23344444444445578899
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
|.++|+.+...+ +.|.+++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999998876 567777777777777788877887776666553 67799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004922 388 DMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 427 (723)
+++-..+. +...+..+...+.-. .+...+.++|.+..+.
T Consensus 179 E~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99876432 444444555544433 3566788888888765
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=0.015 Score=58.11 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~ 381 (723)
++++.|+..++.+...- +.|+.........+.+.|+..+|.+.++.+.. ..|+ ...+-.+..+|.+.|+..+
T Consensus 320 ~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 320 GQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHHHHHHhcCChHH
Confidence 45555555555554431 22333334444555555555555555555554 2333 3344445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
|..+++........ |...|..|..+|...|+..++....
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555544322 5555555555555555555554433
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0043 Score=60.53 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....|...+..|...|++++|...|.++.......... ......+......+ +.+++++|++.|+++.+.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~------- 103 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIEI------- 103 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH-------
Confidence 67788888888989999999999998876653211110 11123333333333 333677777776666541
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcC-CChHHHHHHhhhC------CCC--
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV------PRA-- 220 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~------~~~-- 220 (723)
+...|++..|-.++.. ++..|... ++++.|.++|..+ ...
T Consensus 104 ---------------y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 104 ---------------YREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp ---------------HHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred ---------------HHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 1224555555444433 33444444 4555555544432 000
Q ss_pred --cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 --DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
...+..++..+.+.|++++|.++|+++...... .++. .+-..+-.+...||...|...|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 133445666666677777777777666543221 1111 1122222344556666666666665543
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.00034 Score=59.80 Aligned_cols=97 Identities=7% Similarity=0.018 Sum_probs=58.7
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+......++..+...|++++|.+.++.+ |.+...+..+...+...|++++|...|+...+.+ +.+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 444444445555555556666665555442 4455666666667777777777777777665542 23455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..|...|++++|...|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777666654
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=2.6e-05 Score=46.54 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (723)
+||++|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.00024 Score=59.97 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.++.+-.....+...|++++|..+|+-+.... |.+...|..++..+...|++.+|+..|... |+++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33444444444556899999999999888755 777777888888887777777777777663 666777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.+...|+.+.|++.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00059 Score=53.22 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYIT 623 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (723)
..|..|...+++...-.+|..++..|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566888888888888888888 788888888887776542 24467788888888889999999998
Q ss_pred HHHHHHh
Q 004922 624 LLRARSR 630 (723)
Q Consensus 624 ll~~~~~ 630 (723)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00055 Score=68.88 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=101.0
Q ss_pred CcCHHHHHHHHHHHhh--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~--~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 587 (723)
+.+...+..+++.+.. +.+.+..++...... ....-..|..++|..|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4456667777777764 577888888777764 222234466799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
.||+.+.+.|++..|.++.-.|...+.-.+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999777778889999888888887
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00068 Score=68.21 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=106.4
Q ss_pred CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 004922 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (723)
Q Consensus 319 g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 398 (723)
+.+.+......+++.+....+++.+..++-+.+...... ..-..|..++++.|.+.|..++++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~--~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS--YLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc--cccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 446677788888888888888999999988887632121 222345579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (723)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888778888888888877776
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.003 Score=54.58 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWS 402 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 402 (723)
..|..++..+ ..++...+...++.+..- .+.........-.+...+...|++++|...|+........|+. ....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 478888888888888762 1101111234455667888999999999999999987633332 2445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5677888999999999999775433 334556777788999999999999998753
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=7.3e-05 Score=44.55 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (723)
.+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998774
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0059 Score=59.60 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=117.2
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHH
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (723)
...|...|++++|.+.|.+..+.....+. ....-..+..+...+. .+++++|+..+++. +.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A----------------~~ 102 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYK-KGDPDEAIECYEKA----------------IE 102 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH----------------HH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH----------------HH
Confidence 33477889999999999887653211111 0112223333322222 23666666666553 45
Q ss_pred HHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 004922 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 273 (723)
.|...|++..|-+ .+..+...|... |++++|++.|.+..+. |... -...+..+...+.+.|+++
T Consensus 103 ~y~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 103 IYREAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 5667777776643 456678888888 9999999999887542 2111 1345677888899999999
Q ss_pred HHHHHHHHHHhCCCc-----ccH--HHHHHHH-hhhcCChHHHHHHHHHHHHcC--CCcC--hhhHHHHHHHHHHc--CC
Q 004922 274 KSRAIYEDLRSQNVT-----LNI--YVFNSLM-NVNAHDLKFTLEVYKNMQKLG--VMAD--MASYNILLKACCLA--GN 339 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~-----~~~--~~~~~ll-~~~~~~~~~a~~~~~~m~~~g--~~~~--~~~~~~ll~~~~~~--~~ 339 (723)
+|.++|+++...-.. .+. ..+.++| ..+.+|...|.+.|++..... ...+ ......|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999999998765322 222 2233333 345589999999999987542 2222 23445566665432 23
Q ss_pred hHHHHHHHHHH
Q 004922 340 TVLAQEIYGEV 350 (723)
Q Consensus 340 ~~~A~~~~~~~ 350 (723)
+..+..-|+.+
T Consensus 253 f~~av~~~d~~ 263 (282)
T PF14938_consen 253 FTEAVAEYDSI 263 (282)
T ss_dssp HHHHCHHHTTS
T ss_pred HHHHHHHHccc
Confidence 55555555544
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.58 E-value=0.0031 Score=63.31 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
....|+..+...++++.|..+|+++.+ ..|+. ...++..+...++-.+|.+++++.+..... +......-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~------~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE------RDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh------cCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344566777788999999999999986 33554 445778888888999999999999976433 677777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
..|.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999999873 3455599999999999999999999988765
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.58 E-value=0.0031 Score=63.36 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
...|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++++..+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~------------------ 229 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE------------------ 229 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh------------------
Confidence 3345555555566666666666666532 332 223445555555555555555444422
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHHccCCHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~~~g~~~~a 382 (723)
. +.+......-...+.+.++++.|.++.+++.. ..|+. .+|..|..+|.+.|+++.|
T Consensus 230 ---------------~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 230 ---------------N-PQDSELLNLQAEFLLSKKKYELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred ---------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHH
Confidence 1 23444455555666677777777777777766 33444 3677777777777777777
Q ss_pred HHHHHHHH
Q 004922 383 LKVKEDML 390 (723)
Q Consensus 383 ~~~~~~m~ 390 (723)
+..++.+.
T Consensus 288 LlaLNs~P 295 (395)
T PF09295_consen 288 LLALNSCP 295 (395)
T ss_pred HHHHhcCc
Confidence 77666554
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.0018 Score=57.52 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHHH
Q 004922 547 NHISWTILIDACGG-----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----------------SKRLKQAFSL 605 (723)
Q Consensus 547 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 605 (723)
+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 34455555555556666666666666666655432 1234568889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 606 FEEMKHYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
+++|...|+-||..|+..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999877776
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.024 Score=53.53 Aligned_cols=188 Identities=7% Similarity=-0.018 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-..+..+.+.|++++|+..|+++....+.+. +. ..+...++.++.+.+++++|+..+++.++ ..|+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a----~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YS----QQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCc
Confidence 33344566677779999999999999999854332 11 22234666778999999999999999998 4565442
Q ss_pred ccchhhhhHHHHHH--hh---------------ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH
Q 004922 151 DGSGFKLLKNECQR--LL---------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (723)
Q Consensus 151 ~~~~~~~l~~~~~~--~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (723)
.. +..+..+.+. +. +.....+|+..|+.+++.- |++.- ..+|...
T Consensus 105 ~~--~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~r 166 (243)
T PRK10866 105 ID--YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKR 166 (243)
T ss_pred hH--HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHH
Confidence 21 1122222110 00 1122346677777777654 43321 1122111
Q ss_pred hhhCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 214 ACIVPRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLS--SPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 214 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
...+... ..--..+...|.+.|.+..|..-|+.+.+.-. +....+...++.+|...|..++|......+.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111000 01122467789999999999999999987532 1245677788899999999999988776654
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.01 Score=51.23 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (723)
+...+...|++++|+..++....... ....+....+.|.+.|+.++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444444444444444333222 22233344444444444444444443
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.32 E-value=0.2 Score=49.52 Aligned_cols=86 Identities=7% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCCCcccccchhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccC
Q 004922 49 IPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREG 127 (723)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g 127 (723)
....|...+.+...++.+|++ ..+|-.|++-+-.+|..++....++++....+ -|..|.. .++.-....
T Consensus 21 ~~~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l---------y~s~ELA~~ 90 (660)
T COG5107 21 SDNIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL---------YMSGELARK 90 (660)
T ss_pred ccCCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH---------Hhcchhhhh
Confidence 344555556677779999999 99999999999999999999999999987743 2232322 122234567
Q ss_pred ccchHHHHHHHHhhcCC
Q 004922 128 RIDCVVGVLKKLNELGV 144 (723)
Q Consensus 128 ~~~~A~~~~~~~~~~~~ 144 (723)
++.....+|.+-+..-+
T Consensus 91 df~svE~lf~rCL~k~l 107 (660)
T COG5107 91 DFRSVESLFGRCLKKSL 107 (660)
T ss_pred hHHHHHHHHHHHHhhhc
Confidence 78888888887776433
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.01 Score=49.12 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 403 (723)
++..+...+.+.|++++|.+.|..+...... .......+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777788889999999999888762100 0112345666888888999999999999988865322 12456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7888888999999999999888763
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0039 Score=55.44 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCcCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----------------CCHHH
Q 004922 510 SFKPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGS----------------GNVEG 566 (723)
Q Consensus 510 ~~~p~~~~~~~ll~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~ 566 (723)
+-..|..+|..++..|.+ +.+-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 456788999999999973 4677788899999999999999999999988653 23578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 004922 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMK 610 (723)
Q Consensus 567 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 610 (723)
|++++++|...|+-||..++..+++.|++.+.. .+..++.-.|.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877653 34444444443
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0024 Score=54.12 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=79.7
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
++.....+.++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++++|+..|.......+ -|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 445555667778888899999999988774 66778888899999999999999999999887543 4677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999887754
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.23 Score=48.90 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
..+.+..+.-+...|+...|.++..+.. -|+..-|-..+.+|+..++|++-.++-.. +-++..|..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHH
Confidence 3456666777788899888888877664 37888999999999999999887765432 124577899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
++.+|.+.|+..+|..+...+ + +..-+..|.++|++.+|.+.-.+
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999888772 1 35567888899999998776543
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.25 E-value=0.0026 Score=64.16 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=58.3
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|+++++.. |.+ ..++..+..+|...|++++|+..++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~--P~~------------------------------~~a~~~~a~~~~~~g~~~eAl~~~~ 60 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD--PNN------------------------------AELYADRAQANIKLGNFTEAVADAN 60 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999888755 444 3455556666666677777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+... .+...|..+..+|...|++++|+..|++..+.
T Consensus 61 ~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 61 KAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7665321 24556666666777777777777777776654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0018 Score=60.25 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=63.8
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
+.+.++|.+|+..|.++++.. |.+..+|..-..+|.+.|.++.|++-++.. |....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 344789999999999988855 777777777777777777777777665553 33446666777777777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHH
Q 004922 241 LRAYDASKKHLSSPNMYICR 260 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~ 260 (723)
.+.|.+.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777777665 445444443
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.23 E-value=0.0043 Score=51.46 Aligned_cols=104 Identities=11% Similarity=-0.024 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..+..++..+.+.|++++|...++.++... |+... ...+...+...+...|+++.|...|+.+... .|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcc
Confidence 456677888899999999999999998874 33210 0122234556688999999999999999874 4443211
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
... +......+...|++++|+..++++++..
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDA---LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHH---HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 222 2333333445899999999999988765
No 166
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.015 Score=52.31 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=103.9
Q ss_pred cCCcc--hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 65 RDLSS--RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 65 ~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
|.|+. ....|..-+.+|....+++.|...+.++.+-.- +.+ .++....+...+...-....+.++..+++++..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---lfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444 567788888899999999999998888774421 222 222344444444445555556666666655543
Q ss_pred c---CCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC
Q 004922 142 L---GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (723)
Q Consensus 142 ~---~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (723)
. ...|+ +-..-+..+..+.++-++++|+.+|.+.. ......++..+|.++
T Consensus 100 lY~E~Gspd------tAAmaleKAak~lenv~Pd~AlqlYqral----------------avve~~dr~~ma~el----- 152 (308)
T KOG1585|consen 100 LYVECGSPD------TAAMALEKAAKALENVKPDDALQLYQRAL----------------AVVEEDDRDQMAFEL----- 152 (308)
T ss_pred HHHHhCCcc------hHHHHHHHHHHHhhcCCHHHHHHHHHHHH----------------HHHhccchHHHHHHH-----
Confidence 2 01121 11222222333334455555555554432 122222222333222
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---Cccc
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASK----KHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLN 290 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~~~ 290 (723)
+......+.+..++++|-..|.+-. +..-.++. ..|-..|-.|....++..|...++.--+.+ -..+
T Consensus 153 -----~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed 227 (308)
T KOG1585|consen 153 -----YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED 227 (308)
T ss_pred -----HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH
Confidence 2233444555555555544433211 11011222 234444445555666666666666644332 1234
Q ss_pred HHHHHHHHhhhc-CChHHHHHHH
Q 004922 291 IYVFNSLMNVNA-HDLKFTLEVY 312 (723)
Q Consensus 291 ~~~~~~ll~~~~-~~~~~a~~~~ 312 (723)
..+...||.+|. |+.+.+.+++
T Consensus 228 ~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 228 SRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhccCCHHHHHHHH
Confidence 555666666654 5555554443
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.17 E-value=0.0077 Score=47.22 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=38.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++........ +..++..+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHH
Confidence 3444444455555555555544431 1112233444444444444555555554444443221 223344444444
Q ss_pred HhcCCHHHHHHHHHHH
Q 004922 409 ANAGLVEQAMHLFEEM 424 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~ 424 (723)
...|+++.|...+...
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4444444444444443
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.16 E-value=0.0074 Score=47.30 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+...+...|++++|..++++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 445666677788888888888888765432 44667777778888888888888888877654 3344567777778888
Q ss_pred hCCHHHHHHHHHHhhh
Q 004922 446 ACQFDRAFRLFRSWTL 461 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~ 461 (723)
.|+.+.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888776654
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.01 Score=57.66 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHhhh-cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
.+|..+++...+.+..+.|..+|.+.++.+ ...+++...++|..+ .++.+.|.++|+...+. ...+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356677777777777778888887777553 345566666666555 35666677777777654 245667777777888
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
...|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877651 2222 236777777767777777777777777654
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.01 Score=55.68 Aligned_cols=114 Identities=10% Similarity=0.124 Sum_probs=81.0
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
.+...++.+|++ ...|..|...|...|++++|...|.++.+. .|+...... .+...+..-.....-.++..+|+
T Consensus 144 ~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~---g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 144 RLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILL---GLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHH---HHHHHHHHhcCCcccHHHHHHHH
Confidence 366669999999 999999999999999999999999999998 444333321 22222222233333447999999
Q ss_pred HHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 138 KLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
++++ ..|++. .....|.- .+...|++.+|...++.|++..
T Consensus 218 ~al~--~D~~~i---ral~lLA~---~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 218 QALA--LDPANI---RALSLLAF---AAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHh--cCCccH---HHHHHHHH---HHHHcccHHHHHHHHHHHHhcC
Confidence 9997 566554 33334433 3445899999999999998865
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.011 Score=57.44 Aligned_cols=144 Identities=10% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|..++...-+.+..+.|..+|.+....+. +..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------------------------------------------~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR----------------------------------------------CTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------S-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------------------------------------------CCH
Confidence 3566677777777777777777777653321 245
Q ss_pred CHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHH
Q 004922 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV----VAYTT 588 (723)
Q Consensus 514 ~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ 588 (723)
++....+.|.-++ ++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.... + |.. ..|..
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~ 112 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKK 112 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHH
Confidence 5666666666554 4666688888877765 4456667777777777888888888888887764 2 333 37777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (723)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 628 (723)
.+.-=.+.|+.+.+.++.+++.+ .-|+...+..++.-|
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 77777777888888888877776 244444444444433
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.024 Score=55.00 Aligned_cols=138 Identities=16% Similarity=0.041 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhh-cCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCCH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GV-TPNT 398 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~ 398 (723)
..|..|.+.|.-.|+++.|....+.-..+.. -|.-......+..+.+++.-.|+++.|.+.|+.-... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566777777778888888776554333211 1211123346777888888888888888888765432 21 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
....+|.++|.-..++++|+.++.+-..- ...-....|-++..+|...|..++|+.+.+.-...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34556777777777888888877654321 11234556777888888888888888777655443
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.013 Score=50.05 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.++.+-.....+-..|++++|..+|.-+...+ +.+..++..|+..+...+++++|+..|... +.++..+.....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 44444444445556899999999999988755 677788899999999999999999987763 677788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.|...|+.+.|+..|....+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998887
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.017 Score=47.22 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhc
Q 004922 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (723)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (723)
...+-..|+.++|+.+|++.+..|+.... ....++.....+...|++++|+.+|+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33456677778888888877776554322 3345555555566677777777777776653
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.05 E-value=0.0019 Score=49.53 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=38.2
Q ss_pred cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (723)
Q Consensus 337 ~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (723)
.|+++.|..+++++...... .++...+..+..+|.+.|++++|..+++. ...+.. +......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 35566666666666552100 01233344455566666666666666655 221111 22223334555566666666
Q ss_pred HHHHHHH
Q 004922 417 AMHLFEE 423 (723)
Q Consensus 417 a~~~~~~ 423 (723)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655543
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0014 Score=50.34 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987542 2455566689999999999999999988 3322 1233444566889999999999999
Q ss_pred HHHH
Q 004922 455 LFRS 458 (723)
Q Consensus 455 l~~~ 458 (723)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.03 E-value=0.42 Score=47.64 Aligned_cols=455 Identities=12% Similarity=0.056 Sum_probs=242.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhh
Q 004922 80 KLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 157 (723)
.+.+++++.+|..+|.+..+.- ..|..+. -.++ .+++.+| -..+.+.-...+....+. .|+. .+-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lk----eEvl~grilnAf-fl~nld~Me~~l~~l~~~--~~~s-----~~l~ 82 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLK----EEVLGGRILNAF-FLNNLDLMEKQLMELRQQ--FGKS-----AYLP 82 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHH----HHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh--cCCc-----hHHH
Confidence 4677899999999999987663 2333332 2233 4455555 445566656666666553 3321 2222
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (723)
+..+...+ +.+.+..|++.+..-...-........-..+-. .-++-..-+..+..+...|++
T Consensus 83 LF~~L~~Y-~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----------------l~~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 83 LFKALVAY-KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----------------LFSDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----------------HhhHHHHHHHHHHHHHhcCCc
Confidence 22222222 368889998888765443111111111110100 011112233467788889999
Q ss_pred HHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCcccHH
Q 004922 238 VSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNIY 292 (723)
Q Consensus 238 ~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g--------~-------~~~a~~~~~~m~~~------g~~~~~~ 292 (723)
.+++.+++++...-.+ -+..+|+.++-.+++.= . ++.+.-...+|... .+-|...
T Consensus 145 ~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peee 224 (549)
T PF07079_consen 145 SEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEE 224 (549)
T ss_pred chHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHH
Confidence 9999999888765443 47788887555544321 1 12222222223221 2234444
Q ss_pred HHHHHHhh-hc---CChHHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 293 VFNSLMNV-NA---HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 293 ~~~~ll~~-~~---~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
.+..++.- +. ....--++++..-...-+.|+-. +...|...+.+ +.+++..+.+.+........-+.=..++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444442 11 12233344444444444455533 33334444443 55555555554433110000111234688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh-c---CCHHHHHHHHHHHHHcCCCCCHH-H
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN-A---GLVEQAMHLFEEMLQAGCEPNSQ-C 435 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~li~~~~~-~---g~~~~a~~~~~~~~~~~~~~~~~-~ 435 (723)
.++...++.++...|.+.+.-+...+ |+...- ..+-+..|. - -+...-+.++......++ |.. .
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQL 378 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQL 378 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHH
Confidence 88888899999999999988877653 332211 112222221 1 112233344444443322 221 1
Q ss_pred HHHHH---HHHHHhCC-HHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCC
Q 004922 436 CNILL---QACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (723)
Q Consensus 436 ~~~ll---~~~~~~g~-~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
...++ +-+-+.|. -++|.++++.+..-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------ 410 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------ 410 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------
Confidence 12222 22334444 778888887766421
Q ss_pred CcCHHHHHHH----HHHHhh-----cHHHHHHHHHHHHHcCCCCCH----HHHHHHHH--HHHcCCCHHHHHHHHHHHHH
Q 004922 512 KPTTTTYNIL----MKACCT-----DYYRVKALMNEMRTVGLSPNH----ISWTILID--ACGGSGNVEGALQILKIMRE 576 (723)
Q Consensus 512 ~p~~~~~~~l----l~~~~~-----~~~~a~~l~~~m~~~~~~p~~----~~~~~li~--~~~~~g~~~~A~~~~~~m~~ 576 (723)
.-|...-|.+ =.+|.+ ...+-..+-+-+.+.|++|-. ..-|.|-+ -+...|++.++.-.-..+.+
T Consensus 411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ 490 (549)
T PF07079_consen 411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK 490 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2233333322 223332 244555666677778887733 34455544 34678999999888777776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (723)
Q Consensus 577 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 625 (723)
+.|++.+|..+.-+.....++++|..+++.+ .|+..++++=+
T Consensus 491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 6899999999999999999999999999876 67777776543
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.99 E-value=0.002 Score=46.56 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
++..+.+.|++++|+..|++++.. .|.....+.. +...+...|++++|...|+++++ ..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~------lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYL------LGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHH------HHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 567888999999999999999999 6765544444 44448999999999999999987 3553
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.31 Score=46.10 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
.......+...|++++|.+.|+.+....+.+ ... .-.++.++.+.+++++|...|++..+.-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4445556667888899999888888753322 222 2455677788889999999888888763
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.11 Score=50.88 Aligned_cols=255 Identities=12% Similarity=0.014 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
..++.+|+..+..+++.. |++..+|..-+..+...+++++|.-..+.. +..........+.+...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888888888888755 888888888888888888888877655432 22222222233333333333333333
Q ss_pred HH---------------HHHhcCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHhhhcCCh
Q 004922 244 YD---------------ASKKHLS-SPNMYICRTII-DVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDL 305 (723)
Q Consensus 244 ~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~ 305 (723)
++ ....... +|.-..+..+- ..+.-.|++++|.+.--...+.. ...+....+.++-.+..+.
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence 22 1111111 12223333332 34566789999988777766542 1222333333333355678
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHH-------------HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNI-------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~-------------ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
+.+...|.+-+..+ |+...-.. =.+-..+.|.+..|.+.|.+...+.... ..++...|......
T Consensus 220 ~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nra~v 296 (486)
T KOG0550|consen 220 DKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNRALV 296 (486)
T ss_pred HHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHhHhh
Confidence 88888888887654 44322111 1233457899999999999998865443 67777888888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
..+.|+.++|+.--+.....+.. -+..|..-..++...+++++|.+-++...+..
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988888764211 12233444456666788999999998887753
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.94 E-value=0.029 Score=56.69 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=66.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (723)
Q Consensus 331 l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (723)
...+...|++++|.+.|+++..+ .+.+...|..+..+|.+.|++++|+..+++.+..... +...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 34555677888888888887763 2334556777777788888888888888888776433 56677777778888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 004922 411 AGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 411 ~g~~~~a~~~~~~~~~~ 427 (723)
.|++++|...|++..+.
T Consensus 83 lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 83 LEEYQTAKAALEKGASL 99 (356)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 88888888888887765
No 182
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.91 E-value=0.39 Score=46.73 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=43.6
Q ss_pred hhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhhc
Q 004922 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~ 142 (723)
.++|+++.|..++.++.... .+|+.... ....+.++.......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999987764 24544332 3445566777777777 999999999988764
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.73 Score=48.39 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=39.1
Q ss_pred HHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..+.+...+++-+.+...+|.+....-.+.+++.+.|.-++|++.|-+... |. +.+..|...++|.+|.++
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHH
Confidence 333344444444444455566666666666666666666666665544221 21 223445555666666655
Q ss_pred HHH
Q 004922 279 YED 281 (723)
Q Consensus 279 ~~~ 281 (723)
-+.
T Consensus 901 aq~ 903 (1189)
T KOG2041|consen 901 AQR 903 (1189)
T ss_pred HHh
Confidence 543
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.88 E-value=0.057 Score=49.65 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
+....-..+..+...|++.+|+..|+.+....+... + ...+...++.++.+.|+++.|...+++.++. .|+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~----a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-Y----APQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-T----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc
Confidence 345556677888889999999999999999844311 1 2334456777789999999999999999984 55433
Q ss_pred cccchhhhhHHHHHH----------hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC
Q 004922 150 FDGSGFKLLKNECQR----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (723)
... ...+..+.+. ..+.+...+|+..|+.++..- |++.. ...|......+..
T Consensus 77 ~~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 77 KAD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAELRN 138 (203)
T ss_dssp THH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHHHHH
T ss_pred chh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHHHHH
Confidence 111 1122221111 122344556777777776644 43322 1122221111100
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004922 220 A-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 220 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 275 (723)
. ..--..++..|.+.|.+..|..-++.+.+.-... ...+...++.+|.+.|..+.+
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0 0112236778889999999999998888753211 123566777788888877644
No 185
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.87 E-value=0.058 Score=48.18 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+.+....... +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 445666777788889999999998888763111 11 1356788888888899999999999888876433 456666
Q ss_pred HHHHHHHhcCC
Q 004922 403 SLINACANAGL 413 (723)
Q Consensus 403 ~li~~~~~~g~ 413 (723)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 67777777665
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.79 E-value=0.59 Score=45.61 Aligned_cols=245 Identities=14% Similarity=0.045 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|.+-|+.|.... .....-...+.-.-.+.|..+.|.++. .+.|.-..++..++...|..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 477888888888776422 101111111222223456666555543 33455666666777777777777777777
Q ss_pred HHHHHhcC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHH---HHHhhhcCChHHHHHHHHH
Q 004922 244 YDASKKHL-SSPNMY--ICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNAHDLKFTLEVYKN 314 (723)
Q Consensus 244 ~~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~~~~a~~~~~~ 314 (723)
.+.-.+.. +.+++. .-..|+.+-.. .-+...|...-.+..+. .||..--. +-.....++..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 76655432 223321 12223322111 12344444444333332 23321111 1111122556666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
+.+...+|+ .+. +..+.+.|+ .+..-++...++.. ++|| ......+..+-...|++..|..--+.....
T Consensus 289 aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 289 AWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 666533333 221 122333343 23333333333211 2233 334455555556666666555544444432
Q ss_pred CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 004922 394 VTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~ 427 (723)
.|....|..|.+.-.. .|+-+++...+.+..+.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4555555555554433 36666666666665554
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.005 Score=45.03 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNE 141 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~ 141 (723)
...|..++..+...|++++|+..|++++.. +|+....+ .++...+...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~------~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAY------YNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH------HHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999 77755443 44455588999 79999999999887
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.78 E-value=0.15 Score=45.56 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344577777788889999999999999886543332 3578888889999999999999999888753 3345566666
Q ss_pred HHHHHHhCCHHHHH
Q 004922 440 LQACVEACQFDRAF 453 (723)
Q Consensus 440 l~~~~~~g~~~~a~ 453 (723)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766655543
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.036 Score=49.31 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+....+... ......+|..+...+...|++++|+..++........ ...++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 455667777778889999999999988763110 0112347888888889999999999999988875322 3455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 004922 404 LINACA-------NAGLVEQAMHLFEEM 424 (723)
Q Consensus 404 li~~~~-------~~g~~~~a~~~~~~~ 424 (723)
+...+. +.|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777777666655544
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.72 E-value=0.039 Score=49.09 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+..++..+...|++++|...|+........+ ...++..+...|...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888888899999999999987643222 2357888889999999999999999887754
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.72 E-value=0.14 Score=54.17 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYI 622 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (723)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...|...|+.++|.+.+++... +.|...||.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 45577877777777789999999999999985 57888999999999999999999999999876 467666654
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.72 Score=45.49 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=31.9
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
.....|+.+-|..+++. .|. ...-+..+...++.+.|+.-.-...+.+.+|..|+..-
T Consensus 9 ~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~ 66 (319)
T PF04840_consen 9 KAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLK 66 (319)
T ss_pred HHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHH
Confidence 33447888888887652 121 23345566667777776544333334444555555433
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.70 E-value=0.0043 Score=46.79 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc--CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
...+..++..+...|++++|+..|+++++.. ..+ ........+.++...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998773 122 2233456678888899999999999999998875
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.047 Score=51.46 Aligned_cols=113 Identities=9% Similarity=-0.053 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC---CHHHHHHH
Q 004922 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR---DLVSALRA 243 (723)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~---~~~~A~~~ 243 (723)
.+..+.-++.-++.+ |.+...|..++++|...++.+.|...|.. .|+++..+..+..++..+. ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444455545544 88888888888888888888888877666 3777777776666555432 45677888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|+++...+. -|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888877432 366777777777888888888888888888763
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0077 Score=43.88 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=22.6
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555544431 122333444444444455555555555444444
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.63 E-value=0.13 Score=54.59 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=52.7
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
..++..|..+.-.+...|++++|...+++... +.|+...|..+...+...|+.++|.+.+++....++
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34456666666666667888888888888887 567778888888888888888888888888887643
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.031 Score=52.27 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+.+.+++.+|+..|.+...+ .+-|.+.|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 44566777777777777663 2345555666677777777777777766666654322 34567777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
+.+|++.|++.+.. .|+-.+|-.=+
T Consensus 165 ~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 77777777766653 56655554433
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.11 Score=42.50 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+...+..++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..+|++....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556667777888888888888887775443 335556667777888888888888877654
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.58 E-value=0.012 Score=42.36 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667888899999999999998864 236778888899999999999999999988765
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.43 Score=43.81 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=37.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+.++..+.-.+.+.-.+.++++..+...+.++.....+++.-.+.||.+.|...|++..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555555666666666666665544445555566666666666666666666655443
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.088 Score=51.29 Aligned_cols=305 Identities=14% Similarity=-0.008 Sum_probs=153.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh--cCCCcccccccc
Q 004922 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE--LGVAPLELFDGS 153 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~ 153 (723)
.-..-+++.|+...-+..|+.+++.|.+.- ...-.++..+..+|.-.++|++|++....-+- .-+. +..--.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg-dklGEAK 96 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG-DKLGEAK 96 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc-chhcccc
Confidence 345678999999999999999999975421 12344556777788888889888876533211 0000 0000000
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHH----hcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.-..|.+.+.. .|.+++|+-+..+-+ +.+........++.++.+|-..|+--. ...|.+...++.=+
T Consensus 97 ssgNLGNtlKv---~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKV---KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV- 167 (639)
T ss_pred ccccccchhhh---hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH-
Confidence 11112222222 577777766543322 122111122223333333333222100 00010000010000
Q ss_pred HHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCC
Q 004922 230 EFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (723)
...++.|.+.|.+=. ..|-. .--..|..|...|--.|+++.|+...+.-...
T Consensus 168 ----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------- 224 (639)
T KOG1130|consen 168 ----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------- 224 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH-------------------
Confidence 001222333332211 11100 11223444555555555666665544432211
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh-cCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
|.+.=++. .....+..+.+++.-.|+++.|.+.|+....+.. -|.-........+|.+.|.-..+++.|+
T Consensus 225 ---a~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 225 ---AQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred ---HHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111111 1233566778888888999999888877654321 1212233456677888888888888998
Q ss_pred HHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 384 KVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 384 ~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
.++.+-+.. +..-....+-+|..+|...|..++|+.+...-++
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 887664321 1112445677889999999999999888776554
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.57 E-value=0.012 Score=42.93 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=45.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
...|++++|++.|+.+....+ -+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457888888888888877532 36777888888888889999998888888876 3443444333
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.52 E-value=0.91 Score=44.38 Aligned_cols=296 Identities=12% Similarity=0.012 Sum_probs=185.8
Q ss_pred hhHHHHHHHHhhc--CChHHHHHHHHHHHHh-cCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc
Q 004922 72 DYYADMASKLAKD--GRLEEFAMIVESVVVS-EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (723)
Q Consensus 72 ~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 148 (723)
..|+.|...++.. |+-..|..+-.+.-.. ..+.....+++. . ..-...|+++.|..-|+.|.. .|..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe--A-----Qaal~eG~~~~Ar~kfeAMl~---dPEt 152 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE--A-----QAALLEGDYEDARKKFEAMLD---DPET 152 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH--H-----HHHHhcCchHHHHHHHHHHhc---ChHH
Confidence 4566777666554 6777777766654422 112111111111 1 123468999999999999996 3422
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC------CCc-
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP------RAD- 221 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~- 221 (723)
. .--|-.++....+.|..+.|+.+-++.-... |.-.+.+...+...+..|+++.|+++.+... ++.
T Consensus 153 R-----llGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 153 R-----LLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred H-----HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 1 1122223333445799999999888876544 7778888999999999999999999987631 111
Q ss_pred -chHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 222 -ILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 222 -~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
..-..|+.+-.. ..+...|...-.+..+ ..||.. .--.-..++.+.|+..++-.+++.+-+.. |....+..
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l 301 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH
Confidence 111122222111 2345556555444444 445533 33344567899999999999999999884 45555555
Q ss_pred HHhhhcCChHHHHHHHHHHHHc-CCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKL-GVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
...+..|+. ++.-+++..+. .++ .|..+.-.+..+....|++..|..--+.... ..|....|..|...--
T Consensus 302 Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r------~~pres~~lLlAdIee 373 (531)
T COG3898 302 YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR------EAPRESAYLLLADIEE 373 (531)
T ss_pred HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh------hCchhhHHHHHHHHHh
Confidence 556655542 33333332221 123 3456666777888899999998887777766 5688888888877654
Q ss_pred c-cCCHHHHHHHHHHHHHCCCCC
Q 004922 375 D-AKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 375 ~-~g~~~~a~~~~~~m~~~~~~p 396 (723)
. .|+-.++...+.+.+..--.|
T Consensus 374 AetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hccCchHHHHHHHHHHhcCCCCC
Confidence 4 499999998888887753333
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.52 E-value=0.91 Score=47.28 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (723)
+-+.+--+++++++|..|+... +...++-.|++.+|-++|.+
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3344445566777777676543 34456677888888777764
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.49 E-value=0.027 Score=56.50 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=59.6
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
.+|+. ...+..+..+|.+.|++++|+..|+++++. +|+.... ..++.++...|...|++++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777 889999999999999999999999999999 5654321 123456677799999999999999999984
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.43 E-value=0.4 Score=41.59 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCG 267 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 267 (723)
...++.++.+.|++.+|...|... -.+......+.++....+++..|...++++-+.... .+..+.-.+.+.|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 445666777777777777776663 345566666777777777888888777777664311 12334455666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
..|++.+|...|+.....-..|....+-..+
T Consensus 172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777777777654334444433333
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.11 Score=44.91 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 436 (723)
....++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455666677889999999999998887544 788899999999999999999999887754 3788877654
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.069 Score=44.18 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (723)
|..++..+|.++++.|+++....+++..=. ..+.|+..+..+++.+|+..|++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456777788888888888877777754321 1244667777777777777777777777777655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC
Q 004922 611 HYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 611 ~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
..++.-+..+|..|+.-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 44566667777777765544443
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.31 E-value=0.02 Score=41.78 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG-LVEQAMHLFEEM 424 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~ 424 (723)
.|..+...+...|++++|+..|++.++.... +...|..+..++.+.| ++++|+..+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3334444444444444444444444433221 3334444444444444 344444444443
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.073 Score=46.01 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=72.2
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCC---Cc-ccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP---VK-ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (723)
..++.........|+.+.++..+++++..--. ++ ....|..-.+... ... -..+...++..+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l------------~~~--~~~~~~~l~~~~ 72 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL------------REL--YLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH------------HHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH------------HHH--HHHHHHHHHHHH
Confidence 33433333334467888888888888754311 11 0111221111111 000 013455677888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 292 (723)
...|++++|..+...+....+ -+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 899999999999999988532 4788999999999999999999999998754 25555543
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.21 E-value=0.053 Score=51.70 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...|......+.+.|++++|+..|+.++...+ +.. ....+...+...|...|++++|...|+.+.+. .|+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 55677766666778999999999999999954 321 11233345666788999999999999999974 554432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
....+.+....+...|+.++|...|+.+++..
T Consensus 216 ---~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 ---AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred ---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444444444556899999999999988755
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=1.2 Score=43.92 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 558 CGGSGNVEGALQILKIMRED---GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+.|++..|.+.+.+.+.. +.+|+...|.....+..+.|+.++|+.--++..
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 34667777777777776642 344555566666666667777777777666654
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=2.6 Score=45.11 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=95.9
Q ss_pred HHHHHHHH-cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 310 EVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 310 ~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
++.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-..
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 34444432 2444555667777788888999999999887765 38999999999999999999987776655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+. ...-|.-++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 43 346688899999999999999999887632 11 577889999999998876543
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.04 E-value=0.015 Score=43.03 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcc
Q 004922 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 147 (723)
...+.+.+++++|+..++.++.. +|..+..+...+.+ +...|++++|.+.|++..+. .|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~--~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARC------LFQLGRYEEALEDLERALEL--SPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHH------HHHhccHHHHHHHHHHHHHH--CCC
Confidence 46788899999999999999999 67765555555444 89999999999999999984 553
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=1.3 Score=40.92 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL---- 440 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 440 (723)
..+.++..+.-.|.+.-.++++++..+...+-+......+++.-.+.||.+.|..+|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777788888889999999887767788888889998899999999999999887654344444444443
Q ss_pred -HHHHHhCCHHHHHHHHHHhhh
Q 004922 441 -QACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 441 -~~~~~~g~~~~a~~l~~~~~~ 461 (723)
..|.-.+++..|...+.++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hhheecccchHHHHHHHhhccc
Confidence 234455677777777766554
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.84 E-value=0.17 Score=41.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004922 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~ 646 (723)
|..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 46788999999999999999999997642 12356999999999999999999665 5667777
Q ss_pred HHH-cCCCCCHHHHHHHHHHHH
Q 004922 647 MWK-AGYKANDTYLKELIEEWC 667 (723)
Q Consensus 647 m~~-~g~~p~~~~~~~li~~~~ 667 (723)
..+ .++..+..+|..|++...
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 764 789989999999998754
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.78 E-value=1.2 Score=40.85 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+...+..+...|++.+|.+.|+.+....+.. -..+.-.++.++.+.|+++.|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777888899999999999988754321 2445667778888889999999999888765
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.78 E-value=2.5 Score=42.46 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=79.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCcccHHHHHHHHhhhcCC
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVNAHD 304 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~ 304 (723)
+-+++++.+|.++|.++.+.... |. ....+.++++|... +.+.....+..+.+. |-.+-...|.++.....++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 44667777787777776653211 11 22345566666443 344444444444433 4445556666666666677
Q ss_pred hHHHHHHHHHHHHc--CCCc------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 305 LKFTLEVYKNMQKL--GVMA------------DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 305 ~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
++.|.+.+..-... +..+ |-..=+..+..+...|.+.++..+++++....-+....-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 77777777665543 2111 222224456677778888888888777765221111235677777765
Q ss_pred HHHHc
Q 004922 371 KVFAD 375 (723)
Q Consensus 371 ~~~~~ 375 (723)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55544
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.76 E-value=0.023 Score=42.70 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHhHHHhhhccCccchHHHHHHHHhhcC--CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHh
Q 004922 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELG--VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
...+.++...+...|++++|+..|++.++.. ..++. ..+...+.+....+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777888999999999999999988641 22221 12344444444455558999999999887654
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.69 E-value=0.22 Score=47.55 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCH
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNT 398 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~ 398 (723)
..|...+..+.+.|++++|...|+.+... .|+. ..+--+...|...|++++|...|+.+...-+. ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34555555555667788888878777763 2332 34555666677778888888888777754211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 399 ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 399 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+-.+...+...|+.++|..+|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556666777777777777777665
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.67 E-value=0.21 Score=50.30 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=57.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|.+...++++..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555688999999999999999999999998874 4542 46999999999999999999999999875
No 222
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.61 E-value=1.3 Score=43.09 Aligned_cols=146 Identities=14% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCCC---CC
Q 004922 515 TTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDGM---SP 581 (723)
Q Consensus 515 ~~~~~~ll~~~~~~----~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p 581 (723)
..++.+++.....+ +++...+++.|.+.|++-+..+|-+-.-.... .. ....|..+++.|++... .+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 44555555554443 56778899999999999888877653333322 22 35679999999998532 23
Q ss_pred CHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 004922 582 DVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~ 656 (723)
+...+..++.. ..++ .+.+..+|+.+.+.|+.. |..-+.+-+-++......+.+.++.++++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55566666544 3333 457788888888888877 4445555555555555555588999999999999999887
Q ss_pred HHHHHH
Q 004922 657 TYLKEL 662 (723)
Q Consensus 657 ~~~~~l 662 (723)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 777655
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.57 E-value=0.098 Score=38.59 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.|.+.+++++|.++++.+...++. +...|.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555544332 4444444555555555555555555555543
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.57 E-value=2.5 Score=41.12 Aligned_cols=177 Identities=10% Similarity=-0.022 Sum_probs=99.7
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccc-hHHHHHHHHHHHHhc----CC-CCcccccHHH
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (723)
..++|+.+.|..++.++.......++......-..+.+....+...+ ++++|...+++..+. +. ......
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~---- 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD---- 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc----
Confidence 35899999999999998764211122222233344444445555677 888998888876542 10 000000
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (723)
+ .+. ...++..++.+|...+..+ +|..+++.+..... -...++..-+..+.+.++.+
T Consensus 79 ----------~---~el------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 79 ----------G---SEL------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred ----------H---HHH------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChh
Confidence 0 000 0144566777787777654 45556666654322 12445556667777789999
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHhh----hcCChHHHHHHHHHHHHcCCCcCh
Q 004922 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (723)
Q Consensus 274 ~a~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~g~~~~~ 324 (723)
++.+.+.+|...-.. ....+..++.. .......+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 999999999876221 22333333332 223555666666666554444443
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.82 Score=41.68 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=94.7
Q ss_pred HHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccc
Q 004922 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (723)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (723)
.+.+.....+|....++++|...+.++.+. -..+. +.| .+ ...++.|.-+.+++.+. +..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr----slf----hA------AKayEqaamLake~~kl---sEvvd 92 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR----SLF----HA------AKAYEQAAMLAKELSKL---SEVVD 92 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc----cHH----HH------HHHHHHHHHHHHHHHHh---HHHHH
Confidence 444555556678888999998888887752 11111 111 11 23445555555555432 22333
Q ss_pred cHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHH
Q 004922 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS--SPNMYICRTIIDVCG 267 (723)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 267 (723)
.+......|.+.|.++-|--.+++. .-....-++++|+++|.+...- +- ..-...+....+.+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA-----------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA-----------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH-----------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 4444455566666665554433332 1122334566666666654321 10 011223444555566
Q ss_pred hcCCHHHHHHHHHHHHhC----CCcccH---HHHHHHHhhhcCChHHHHHHHHHHHHcC---CCcChhhHHHHHHHHHHc
Q 004922 268 ICGDYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLA 337 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~----g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~ 337 (723)
+..++.+|-..|.+-... .-.++. +.-..++..+.+++..|.+.++.-.+.+ -+-+..+...||.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 666666655444332211 001111 1112223334456666666666533321 122344555555555 34
Q ss_pred CChHHHHH
Q 004922 338 GNTVLAQE 345 (723)
Q Consensus 338 ~~~~~A~~ 345 (723)
|+.+++..
T Consensus 241 gD~E~~~k 248 (308)
T KOG1585|consen 241 GDIEEIKK 248 (308)
T ss_pred CCHHHHHH
Confidence 45544443
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.52 E-value=3 Score=41.69 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
.+...++-.|....+|+..+++.+.+...- +.-....-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 445566677888899999999999987631 11122222233334455 688888888888865554445555555
Q ss_pred HHH
Q 004922 296 SLM 298 (723)
Q Consensus 296 ~ll 298 (723)
.+-
T Consensus 222 L~G 224 (374)
T PF13281_consen 222 LLG 224 (374)
T ss_pred HHH
Confidence 443
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.46 E-value=0.24 Score=45.89 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=65.5
Q ss_pred CcCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~-------~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (723)
+.|..+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.|+..+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 4556666666666542 34555566677777777777777777776554321 11211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
.+......|= .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111112222 22345788899999999999999999999999888864
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.45 E-value=1.6 Score=38.06 Aligned_cols=100 Identities=8% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCC-cChhhHHH
Q 004922 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVM-ADMASYNI 329 (723)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ 329 (723)
.|++.-...|..++.+.|++.+|...|++...--+.-|....-.+-++. .+++..+...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666667777888888888888888888776532223333333333221 13444444444444332100 01112222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+.+.+...|.+.+|+.-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444555555555544443
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.41 E-value=3.3 Score=41.48 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhc--CChHHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH-
Q 004922 291 IYVFNSLMNVNA--HDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY- 366 (723)
Q Consensus 291 ~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~- 366 (723)
...|...|+... .-++.|..+|-+..+.| +.+++..+++++.-++ .|+...|..+|+.-.. .-||...|
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~------~f~d~~~y~ 469 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL------KFPDSTLYK 469 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH------hCCCchHHH
Confidence 345555555432 35677788888887777 5567777777776554 4667777788776544 23444433
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+-.+.-+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-+.|... .|...+...+..-|.
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 45566677778888888888754432 1112 456788888778888888888777777664 555555555555554
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.36 E-value=3.3 Score=43.36 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
-.+-+-+.-++++.+.+..|++. .++..|+-.|++.+|-++|.+.
T Consensus 614 l~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 614 LRYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred cHHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc
Confidence 34445555577788888766653 3566777788888888887654
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.13 E-value=0.1 Score=44.66 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
.+........+.-+-..|++++|..+|.-+ +.+...+..|...+-..+++++|+..|......+. -|...+....
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 334444455555666778888887777664 44556666777777777888888887777655432 2344445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004922 264 DVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~ 284 (723)
..|...|+.+.|...|.....
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667777788888777777665
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.11 E-value=0.51 Score=48.87 Aligned_cols=161 Identities=9% Similarity=0.084 Sum_probs=103.5
Q ss_pred HHHHHhhcCChHHHHHHHHHH-HHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh
Q 004922 77 MASKLAKDGRLEEFAMIVESV-VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 155 (723)
..+...-+|+++++.++.+.- +-..+.++ ....+++-+-+.|-++.|+++...-. ..|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~~~---------~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rF 325 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIPKD---------QGQSIARFLEKKGYPELALQFVTDPD------------HRF 325 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG--HH---------HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHH
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCChh---------HHHHHHHHHHHCCCHHHHHhhcCChH------------HHh
Confidence 344455589999987777521 11111211 12455566788999999988854332 245
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
++.++ .|+.+.|.+..++ .++...|..|+....++|+.+.|++.+.+..+ +..|+-.|...|
T Consensus 326 eLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----~~~L~lLy~~~g 387 (443)
T PF04053_consen 326 ELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----FSGLLLLYSSTG 387 (443)
T ss_dssp HHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT
T ss_pred HHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----ccccHHHHHHhC
Confidence 55555 8999999886543 34566899999999999999999999998865 788888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
+.+.-.++-+.....|- +|....++...|+.++..+++.+.
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99888888877776542 444555556678888888777653
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.03 E-value=0.94 Score=47.70 Aligned_cols=124 Identities=11% Similarity=-0.110 Sum_probs=75.8
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhh-HHHHHHh-----h---ccchHHHHHHHHHHHHhcCCCC
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL-KNECQRL-----L---DSGEVEMFVGLMEVLEEFRLPV 188 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l-~~~~~~~-----~---~~g~~~~A~~~~~~~~~~~~~~ 188 (723)
.++....-.|+.+.+++.+.+..+.+ .... .+..+ +-.+... . .....+.|.++++.+.+.- |
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~-----~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P 264 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSE-NIRS-----PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P 264 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccC-Ccch-----HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C
Confidence 45556677899999999998877632 1111 11111 1111111 0 2456777888888887755 7
Q ss_pred cccccHHHHHHHHhcCCChHHHHHHhhhCCC--------CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 189 KELDEEFRIVQLCVNKPDVNLAIRYACIVPR--------ADILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
++.......++.+...|++++|++.++..-. ....+..++-.+...++|++|...|..+.+
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 7766666677777777777777777775321 113344555566666777777777777665
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.97 E-value=0.24 Score=45.91 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=43.1
Q ss_pred ccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 004922 504 SFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (723)
Q Consensus 504 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 583 (723)
..|+..|+..|..+|+.+|..+-+ ..+.|....-...+ .|- .+-+-+++++++|...|+-||-
T Consensus 96 k~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdk 158 (406)
T KOG3941|consen 96 KYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDK 158 (406)
T ss_pred HHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCch
Confidence 456677777777777777765532 11222222111111 111 1223456677777777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 004922 584 VAYTTAIKVCVRSKR 598 (723)
Q Consensus 584 ~~~~~li~~~~~~g~ 598 (723)
.+-..|+++|.+.|-
T Consensus 159 E~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 159 EIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHhccccc
Confidence 777777777766654
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.17 Score=49.78 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=84.5
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.+.+.|++..|...|+++.+. +.-.. .-+.++......- -...+..+...+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~-l~~~~-------------------~~~~ee~~~~~~~---------k~~~~lNlA~c~ 267 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSF-LEYRR-------------------SFDEEEQKKAEAL---------KLACHLNLAACY 267 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHH-hhccc-------------------cCCHHHHHHHHHH---------HHHHhhHHHHHH
Confidence 467999999999999988763 11100 0111111111110 112345566677
Q ss_pred hcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCH-HHH
Q 004922 202 VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY-MKS 275 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~a 275 (723)
.+.+++..|++..+++ |.+.-+.+.-..+|...|+++.|+..|..+.+ +.| |..+-+.++..-.+...+ +..
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766553 56667788888888899999999999999988 455 455555666554444444 444
Q ss_pred HHHHHHHHhC
Q 004922 276 RAIYEDLRSQ 285 (723)
Q Consensus 276 ~~~~~~m~~~ 285 (723)
.++|..|...
T Consensus 346 kk~y~~mF~k 355 (397)
T KOG0543|consen 346 KKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhc
Confidence 7888888764
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=1.5 Score=39.28 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+.+|--+.+.+...|+.++|..+|+-.+..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 346667777777777777777777776655
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=3.6 Score=37.46 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHH
Q 004922 411 AGLVEQAMHLFEE 423 (723)
Q Consensus 411 ~g~~~~a~~~~~~ 423 (723)
.+++++|.++|.+
T Consensus 27 ~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 27 SNKYEEAAELYER 39 (288)
T ss_pred CcchHHHHHHHHH
Confidence 3455555555544
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.51 E-value=1.6 Score=42.56 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--hC----CHHHHHHHHHHhhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--AC----QFDRAFRLFRSWTLS 462 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~l~~~~~~~ 462 (723)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ...++..+|+.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34455667777777777666655553333222 11 234555666666554
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.47 E-value=7.4 Score=40.79 Aligned_cols=393 Identities=10% Similarity=0.060 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHH-hcCCHHHHHHHHHH
Q 004922 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG-KKRDLVSALRAYDA 246 (723)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 246 (723)
+.+..+++.++..- |.-..+|...+..-.+.|..+.+..+|+. +|-+...|......++ ..|+.+...+.|+.
T Consensus 62 ~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44445555554322 54455555555555566666666666655 3545555555433333 45666677777777
Q ss_pred HHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC-----------ChHHHHHHHH
Q 004922 247 SKKH-LSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLKFTLEVYK 313 (723)
Q Consensus 247 ~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-----------~~~~a~~~~~ 313 (723)
.... |.. .....|...|..-..++++.....+|++.++.. ...++.....+.+ ..+.+.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 6653 211 244567777776677778888888888777641 2222222221110 1111111111
Q ss_pred HHHHc-CC---CcChhhHHHHHHHHH-HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 314 NMQKL-GV---MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 314 ~m~~~-g~---~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
..... .+ .+.......-++--. ..+..+++..+..+... ..-..+-..-...+....|+.
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------------~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------------IHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------------HHHHHHHhhHhHHHHHHhhhh
Confidence 11100 00 000000000000000 00111111111111100 000111112222223333333
Q ss_pred HHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 389 MLSAG---V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 389 m~~~~---~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
-...- + .++..+|..-+..-.+.|+++.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 32221 1 234567888888888899999988888877531 111122333334444445777777766654332
Q ss_pred hhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 004922 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRT 541 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~ 541 (723)
-.. .-.|....+.+.+.-+.++...|..+++.+..
T Consensus 360 i~~---------------------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 360 IHV---------------------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred hcC---------------------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 211 12677888888888888899999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHcCCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHC
Q 004922 542 VGLSPNHI-SWTILIDACGGSGNVEGAL---QILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 542 ~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~ 612 (723)
.- |+.. .-..-+....+.|+.+.+. .++....+. +-+..+.+.+.-- +.-.++.+.|..++.+|.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 63 4433 2233345556788888887 333333322 1222233333322 33468999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH
Q 004922 613 QIQPNLVTYITLLRARSRYGSLHE 636 (723)
Q Consensus 613 g~~p~~~~~~~ll~~~~~~g~~~~ 636 (723)
+.++...|..+++.+.-.+...+
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCcchh
Confidence 67788999999998887776554
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=2 Score=36.97 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=71.0
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC---cchHH-----HHHHHHHhcCC
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DILFC-----NFVREFGKKRD 236 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~-----~l~~~~~~~~~ 236 (723)
+.+.+..++|+.-|..+.+.|...-.+......+....+.|+...|+..|+.+-.+ +.... .-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45578899999999998877644333333444455566677777777777664221 11221 11233455666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|++.....+-+...+-+.-...-.+|.-+-.+.|++..|.+.|.++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665554333333444455555556667777777777766554
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=0.28 Score=45.77 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
.|+.-+.. .+.|++.+|.+.|...+..+++-. + ...+...+...+..+|++++|..+|..+.+. .|+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~-~----~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNST-Y----TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCc-c----cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 56655544 456889999999999999965421 1 2445556777789999999999999999984 45443
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
-.-+.|+++...+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 244567887778888999999999999998765
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.25 E-value=0.42 Score=44.65 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=49.8
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (723)
+...|++.+|...|...++.. |.+.. .+.+++=|...+...|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 444688888888888887755 33211 1233334555555555555555555
Q ss_pred HHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+.+.-.. | -..++-.|.....+.|+.++|...|+++.+.
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555443211 1 1234445555555556666666666655554
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.06 E-value=1.3 Score=35.99 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|....+||+-.+++--.|+.++|++-+++..+..-..+... |..-...|...|+.+.|..-|+...+.|
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 66678888888888888888888888888776422222222 3333445777888888888888877766
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=1.3 Score=42.31 Aligned_cols=113 Identities=10% Similarity=-0.154 Sum_probs=49.9
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHH----H
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----V 198 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~ 198 (723)
+...|+..+|-..++++++. .|.+.. .+..--.+|-- .|+.+.-...++++...- .++ ...++.+ .
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~fy---~G~~~~~k~ai~kIip~w-n~d-lp~~sYv~Gmya 182 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHFY---NGNQIGKKNAIEKIIPKW-NAD-LPCYSYVHGMYA 182 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHHh---ccchhhhhhHHHHhcccc-CCC-CcHHHHHHHHHH
Confidence 34556666666666666553 332221 11111112222 455555555555555431 111 1111111 1
Q ss_pred HHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
=.+...|-+++|++..++. +.+..+...+...+...+++.++.+...
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 1233455666655554442 2233444445555556666666665543
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=11 Score=40.64 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (723)
.-...+.+--+..+...|+..+|.++-.+.+ -||-..|.-=+.+++..+++++-+++-+.++ + +.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhH
Confidence 3344455666677777888888888877776 5788888888888888888888777666553 1 4556678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccc
Q 004922 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQG 679 (723)
Q Consensus 625 l~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~ 679 (723)
+.+|.+.|+.+||.+ ++.+. + + +.....+|.+ |++.+|.+...
T Consensus 751 Ve~c~~~~n~~EA~K---Yiprv---~--~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKK---YIPRV---G--G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhh---hhhcc---C--C----hHHHHHHHHHhccHHHHHHHHH
Confidence 888888888777544 54322 1 1 1156677777 77777776543
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.88 E-value=11 Score=40.31 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
+....-.|..++...|--++|.+.+-+.. .| ...+..|...++|.+|.++-++.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666667777777777766554321 12 13455666677777777666543
No 247
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.86 E-value=4.1 Score=35.52 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHH----HHHHHHHHHH
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF----TLEVYKNMQK 317 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~----a~~~~~~m~~ 317 (723)
+....+.+.+++|+...+..+++.+.+.|++ ..+.++...++-+|.......+-...+.... +++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 3445566778889999999999999999987 4555666677777766655555444433333 3344433331
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
.+..++..+...|++-+|.++...... .+......++.+..+.++...-..+|+...+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244566677777888887777665422 1222223445555555554444444444433
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.68 E-value=0.05 Score=32.84 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 92 (723)
+.++|..+|++ ..+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 34678899999 9999999999999999999863
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=93.54 E-value=7.5 Score=39.74 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYK 313 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (723)
....+|.+.-+...+.+. .|..+...+..+..-.++++.|...|++....+.. ++...|.+++..++|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455667777777776543 47777777777777788899999999888876433 4567788888888888888888888
Q ss_pred HHHHcCCCcC---hhhHHHHHHHHHHcCChHHHHHHHHH
Q 004922 314 NMQKLGVMAD---MASYNILLKACCLAGNTVLAQEIYGE 349 (723)
Q Consensus 314 ~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~ 349 (723)
+..+.. |. .......++.|+.. .++.|.++|-+
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 866542 33 22333344455544 35666666543
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.42 E-value=6.7 Score=36.58 Aligned_cols=189 Identities=8% Similarity=0.017 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+-.-+....+.|++++|...|+.+.... |...- ...+...++-++-+.+++++|+..+++..+. .|...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHP- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCC-
Confidence 3444455666677899999999999999884 32211 1223335566678999999999999999984 44332
Q ss_pred ccchhhhhHHHHHHhhc-------cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcch
Q 004922 151 DGSGFKLLKNECQRLLD-------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 223 (723)
..-+-.+++....+.. .....+|+.-|+.+++.- |++.-......+ ...+ .+..+
T Consensus 106 -n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~--------------i~~~-~d~LA 167 (254)
T COG4105 106 -NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKAR--------------IVKL-NDALA 167 (254)
T ss_pred -ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHH--------------HHHH-HHHHH
Confidence 1234445554333311 222334444555555433 332211111000 0000 00111
Q ss_pred HH--HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 224 FC--NFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 224 ~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.. .+...|.+.|.+..|..-++.|.+.-.. -....+-.+..+|...|-.++|...-.-+..+
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 22 3678899999999999999999886211 12345666777888888888887766555544
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.38 E-value=0.18 Score=32.63 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (723)
..+..++..|...|++++|+.+|+++++. .|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 45778999999999999999999999999 666443
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.35 E-value=2.6 Score=40.87 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc-CCCcccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~ 149 (723)
...+..+..+..+.|++++++..--.-+....+- -.......++.++.+.+-+.-++.+++.+-.+-... |..|...
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 4566677888888899888876543333321111 111122445556777777777777777776665542 3333211
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCc----ccccHHHHHHHHhcCCChHHHHHHhhhC-------C
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK----ELDEEFRIVQLCVNKPDVNLAIRYACIV-------P 218 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~ 218 (723)
-......+.++... .+-++.+++.|+......-..+ ....+..++..|.+..++++|.-+..++ .
T Consensus 121 -~gq~~l~~~~Ahlg---ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 121 -GGQVSLSMGNAHLG---LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred -cchhhhhHHHHhhh---HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 11222334444444 6788889998888765432222 2345566777788888888776654432 1
Q ss_pred -CCc------chHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 219 -RAD------ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 219 -~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
++. .+...+.-++-..|+..+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++..
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 111 2333455566677777777777666433 33222 23345556677778888888777776643
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.25 E-value=2.1 Score=45.10 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=104.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhc----cCccchHHHHHHHHhhcCCCcccc
Q 004922 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
...+++...=.|+-+.+++++....+.+ +....-..+.+-.+...+..++. ....+.|.++++.+.+ ..|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 3455555566799999999999887643 22222222333334445544443 4566789999999997 466543
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHh--cCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC-c---ch
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-D---IL 223 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~---~~ 223 (723)
.+..... ..+...|+.++|++.|++... ..+++-....+..++-.+....++++|...+..+... . ..
T Consensus 268 ----lfl~~~g--R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 268 ----LFLFFEG--RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred ----HHHHHHH--HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 3322222 222338999999999997664 3333444555666788888899999999998886432 1 22
Q ss_pred HH-HHHHHHHhcCCH-------HHHHHHHHHHHh
Q 004922 224 FC-NFVREFGKKRDL-------VSALRAYDASKK 249 (723)
Q Consensus 224 ~~-~l~~~~~~~~~~-------~~A~~~~~~~~~ 249 (723)
|. .....+...++. ++|..+|.++..
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 234455566766 777777766543
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=3 Score=41.35 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCC----------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.|.+.|++..|...|+.+........ ...-..+++.+..++.+.+++.+|+...++.+..+. +|.....
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 45555666666665555433211000 012234678888899999999999999999998864 4888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCC-HHHHHHHHHHhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQ-FDRAFRLFRSWTLS 462 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~-~~~a~~l~~~~~~~ 462 (723)
--..+|...|+++.|...|+++.+. .|+....+.=+..|. +... .+...++|..|-..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999999999999999986 565555554444443 3333 33446788877654
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.94 E-value=4.8 Score=41.83 Aligned_cols=157 Identities=17% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChH
Q 004922 229 REFGKKRDLVSALRAYDA--SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 306 (723)
+...-+++++++.++... +.. .-+....+.++..+.+.|..+.|+++..+-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~---------------------- 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH---------------------- 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------------
Confidence 445566888887777652 221 12355688888888888999888877653221
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
-.....+.|+++.|.++.++ ..+...|..|.....+.|+++-|++.|
T Consensus 324 -----------------------rFeLAl~lg~L~~A~~~a~~----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 324 -----------------------RFELALQLGNLDIALEIAKE----------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp -----------------------HHHHHHHCT-HHHHHHHCCC----------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred -----------------------HhHHHHhcCCHHHHHHHHHh----------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12233444555555544221 124445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
.+..+ |..|+-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++..+++.+
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54321 3344444555555555555555544443 144444444455555555555544
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.86 E-value=4.3 Score=33.14 Aligned_cols=90 Identities=20% Similarity=0.077 Sum_probs=64.2
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNT---ITWSSLINAC 408 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~---~~~~~li~~~ 408 (723)
++...|+++.|++.|.+...+ .+-....||.-..++.-.|+.++|++=+++.++. |.. +. ..|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 556778888888888888764 3456677888888888888888888888887753 332 22 2333344456
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 004922 409 ANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~ 428 (723)
...|+.+.|..-|...-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 67788888888887776665
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.86 E-value=2.1 Score=36.00 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=56.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|+.+...+-.-+....+.|++++|+..|+.+....+... +. ..+--.++-++.+.|++++|+..+++.++ +.|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya----~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP 78 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YA----EQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHP 78 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-cc----HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC
Confidence 334455666677788889999999999999998854221 11 22223667778999999999999999998 566
Q ss_pred ccc
Q 004922 147 LEL 149 (723)
Q Consensus 147 ~~~ 149 (723)
.+.
T Consensus 79 ~hp 81 (142)
T PF13512_consen 79 THP 81 (142)
T ss_pred CCC
Confidence 554
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.83 E-value=5.4 Score=33.91 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 514 ~~~~~~~ll~~~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
+....+.++..|++ +..+....+.. ..+......++..|.+.+.++++..++.++.. |...+..
T Consensus 40 ~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~ 104 (140)
T smart00299 40 NPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVT 104 (140)
T ss_pred chhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHH
Confidence 44456667777665 33333333331 12334445566777777777777777766532 2223333
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 593 CVRS-KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (723)
Q Consensus 593 ~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 629 (723)
+... ++.+.|.+++++- -+...|..++..+.
T Consensus 105 ~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 105 LIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 3333 6677777766641 25556666666554
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.76 E-value=6 Score=34.23 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=80.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH-----HHHHHHhhhcCC
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY-----VFNSLMNVNAHD 304 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~ 304 (723)
+.+.+..++|+.-|..+.+.|... .+-............|+...|...|+++-.....|-.. .-.+++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456788899999999998877542 23334444556778899999999999987764444332 112222233466
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+++...-.+.+...+.+.....-..|.-+-.+.|++.+|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666666555444445555666666788888888888888764
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.65 E-value=1.7 Score=36.53 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=48.1
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
.+.|++++|++.|+.+..+- |.+ +-...+...|+.+|.+.+++++|...++
T Consensus 21 l~~~~Y~~A~~~le~L~~ry--P~g---------------------------~ya~qAqL~l~yayy~~~~y~~A~a~~~ 71 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY--PFG---------------------------EYAEQAQLDLAYAYYKQGDYEEAIAAYD 71 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC--CCC---------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34688888888888776644 221 1123556678889999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHH
Q 004922 246 ASKKHLSSPNMYICRTIIDVCG 267 (723)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~ 267 (723)
+..+..+.....-|...+.+++
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHH
Confidence 9888654422234444444443
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.31 E-value=1.7 Score=41.33 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYIT 623 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 623 (723)
.++..++..+..+|+.+.+...++++.... .-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355667777788888888888888887753 23677888888888888888888888877653 577777777666
Q ss_pred HHHH
Q 004922 624 LLRA 627 (723)
Q Consensus 624 ll~~ 627 (723)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.18 E-value=5.8 Score=34.14 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004922 229 REFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~ 249 (723)
..+..+|+|.+|..+|+++.+
T Consensus 52 ~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 52 WLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 334555666666666666554
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=6.1 Score=37.59 Aligned_cols=40 Identities=13% Similarity=-0.116 Sum_probs=17.8
Q ss_pred HHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 208 NLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
....+-+..-|.+...-..+...+...|+.+.|.+.+-.+
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444333
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.08 E-value=6.8 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.213 Sum_probs=9.7
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGE 349 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~ 349 (723)
+++.|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444455555555444443
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=22 Score=39.05 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
--++..+++..+.+.+..+.+..-+ -++..|-.+++.+++.+.++...+...++..
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3466777788888888877776643 3788899999999999888777776665543
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=24 Score=38.82 Aligned_cols=180 Identities=12% Similarity=0.083 Sum_probs=118.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
....-+..+.+...++-|+.+...- +.+++.. ..........+.+.|++++|...|-+-+.. +.|+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~-----~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~---- 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTL-----AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE---- 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH----
Confidence 4455677777888888888776533 3333332 222234455567899999999998777753 55532
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcch--HHHHHHH
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVRE 230 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~ 230 (723)
.++ .+.+..+..+-..+++.+.+.+... ......|+..|.+.++.+.-.++.+..+..... ....+..
T Consensus 403 -----Vi~---kfLdaq~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~I 472 (933)
T KOG2114|consen 403 -----VIK---KFLDAQRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEI 472 (933)
T ss_pred -----HHH---HhcCHHHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHH
Confidence 122 3445677888888899998888554 444567899999999999988888887744333 3345566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+-+.+-.++|..+-.... .+.+....++ -..+++++|++.+..+.
T Consensus 473 lr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 666666666665544432 2444555554 35688999999988765
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=91.62 E-value=5.7 Score=40.56 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=57.7
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFN 295 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~ 295 (723)
+.|+.+...+.....-.++++.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+.. .........
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 555566666666666677788888888887763 343 3445555555666788888888888755542 122233334
Q ss_pred HHHhhhc-CChHHHHHHHHH
Q 004922 296 SLMNVNA-HDLKFTLEVYKN 314 (723)
Q Consensus 296 ~ll~~~~-~~~~~a~~~~~~ 314 (723)
..+..|. ...+.+.++|-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCchhhhHHHHhh
Confidence 4443333 566777776654
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.95 E-value=2.4 Score=37.79 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..+..+...|++.|+.+.|.+.+.++.+....|. ...+-.+|......|++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577778888888888888888888877654444 33566677777778888888888777664
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.67 E-value=32 Score=38.30 Aligned_cols=265 Identities=10% Similarity=0.020 Sum_probs=134.7
Q ss_pred cccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH----HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004922 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE----FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (723)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (723)
..........|...|.+++|+...-.+.+. .....++.- +...+++.--+.+.+.+...-...++...-.-+-..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~ 425 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP-EMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL 425 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH-HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Confidence 444555666677777777777655444322 222222222 223333333333332221110000111111111223
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccc-------HHHHHH---HHhhhcCChHHHHHHHHHHHHc----CCCcChhhHHHHHH
Q 004922 267 GICGDYMKSRAIYEDLRSQNVTLN-------IYVFNS---LMNVNAHDLKFTLEVYKNMQKL----GVMADMASYNILLK 332 (723)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~---ll~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~ 332 (723)
....++++|..+..++...-..|+ ...|++ ++..+.++++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456889999999888765421221 123333 3445668888887777666443 23345666777778
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH-----HHHHccCC--HHHHHHHHHHHHHCC--CC----CCHH
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-----KVFADAKW--WQMALKVKEDMLSAG--VT----PNTI 399 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll-----~~~~~~g~--~~~a~~~~~~m~~~~--~~----p~~~ 399 (723)
+..-.|++++|..+..+..++.+. .+...+..+. ..+...|. +.+.+..|....... -. +-..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 888899999999998888775422 2333332222 22445663 333444444433221 01 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQ--C--CNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
++..++.++.+ .+.+..-...-.+.| ..|... . +..+...+...|+.++|...+.++..-.
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44455555554 333332222222111 122222 1 2356777888999999999998887643
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.59 E-value=2 Score=38.31 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
....+..++..|.+.|++++|...|.++.+....+... ..++-++|+.....|++..+...+.++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998887776643 556667888888999999999988887764
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.57 E-value=15 Score=34.37 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccH--HHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI--YVFNSL 297 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~--~~~~~l 297 (723)
.+..-+..-.+.|++++|.+.|+.+..+.+- | ...+.-.++.++-+.+++++|+..+++....-.. ||. ..|-..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444445556678888888888888764321 1 3445556666777888888888888887766332 332 222222
Q ss_pred Hhhh------cCChHHHHHHHHHH---HHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHH
Q 004922 298 MNVN------AHDLKFTLEVYKNM---QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (723)
Q Consensus 298 l~~~------~~~~~~a~~~~~~m---~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (723)
+..+ .+|...+.+.|..+ +.. =||.. =..+|......+... =...=..
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~--------LA~~Em~ 172 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA--------LAGHEMA 172 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH--------HHHHHHH
Confidence 2211 12333333333333 332 12211 111222222221110 0001123
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+.+-|.+.|.+..|..-++.|++. .+-+ ...+-.|..+|.+.|-.++|...-.-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445677778888888888887765 2212 224455666777777777777766655443
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.49 E-value=8.7 Score=31.59 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC
Q 004922 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
+...+...+..+..+|+-+.-.+++.++.+. -++++...-.+..||.+.|+..++. +++++..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~---ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREAN---ELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH---HHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHH---HHHHHHHHhchH
Confidence 5556777888888999999999999988753 4789999999999999999966644 488888888864
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.47 E-value=13 Score=35.85 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=20.1
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
...|-+++|++.-++..+.+.. |...-.++...+.-.|++.++.++.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHhccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHH
Confidence 3444444444444444443321 3333444444444444444444433
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.46 E-value=0.3 Score=29.87 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
+|..|+..+.+.|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997655
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=17 Score=34.75 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=22.3
Q ss_pred hcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 202 VNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
...++..+|...++. .|.+..+-..++..|...|+.+.|..+++.+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334444444443333 23444444455555555555555555555544
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.39 E-value=1.2 Score=28.78 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=10.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
.+...|.+.|++++|.++|++.++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.32 E-value=3.4 Score=39.41 Aligned_cols=78 Identities=9% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNI 438 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 438 (723)
.++..++..+...|+++.+...++.+....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667777788888888888888888877654 778888888888888888888888887765 477777776655
Q ss_pred HHHH
Q 004922 439 LLQA 442 (723)
Q Consensus 439 ll~~ 442 (723)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.03 E-value=23 Score=35.67 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
+...++-+|....+|+...++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556888888888888888887641 11111111223334455 7888888888888665555777777777
Q ss_pred HHHHH
Q 004922 439 LLQAC 443 (723)
Q Consensus 439 ll~~~ 443 (723)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.77 E-value=12 Score=32.36 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
..-.+.++.+++..+++.+.- +.|.. .++..++ +...|+|.+|..+|+.+.... |....-..|+..|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 344577899999999999987 44544 3444444 789999999999999987653 3333344555544
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCEP 431 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~ 431 (723)
.....-..-...-+++...+-.|
T Consensus 88 L~~~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPSWRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChHHHHHHHHHHhcCCCh
Confidence 44333333333444555554333
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.65 E-value=5.1 Score=32.89 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=50.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
........-++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455556678888999999999999998753 3478888899999999999999999999999999864
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.49 E-value=7.7 Score=32.78 Aligned_cols=62 Identities=13% Similarity=-0.014 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
..+.|+.+...-...++++++..+++.+.-.. |.....-..-+..+...|++.+|.++++.+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 34444444433344788888888888887644 544433333333333344444444443333
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.12 E-value=17 Score=32.90 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh-hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+.+||-+.-.+...|+++.|.+.|+...+....-+-...|--|.. +.|++..|.+-|...-..+ +.|+. -...+-.-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPf-R~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPF-RSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChH-HHHHHHHH
Confidence 446777777777777777777777777766443343444444443 4467777766555554443 22221 11122222
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-DAKWWQMALKVKEDMLSAGVT------PNTITWSSLINA 407 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~li~~ 407 (723)
...-++.+|..-+.+--. ..|..-|...|..|. ..-..+ .+++.+....-. .=+.||--+..-
T Consensus 177 E~k~dP~~A~tnL~qR~~-------~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAE-------KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HhhCCHHHHHHHHHHHHH-------hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 233345555443322111 133333333332222 111111 222222221100 013456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 004922 408 CANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~ 427 (723)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 77788888888888776644
No 283
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.94 E-value=19 Score=33.32 Aligned_cols=200 Identities=16% Similarity=0.050 Sum_probs=96.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHH-H
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-M 298 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l-l 298 (723)
..+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444555666666666666666665531 122344455556666666666677777776666543222 12222222 2
Q ss_pred hhhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHc
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFAD 375 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~ 375 (723)
....++++.+...+........ ......+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHH
Confidence 3333555555555555533110 012222222333344556666666666665542 111 23445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666665543211 1222333333333444555555555555443
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.64 E-value=1 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888854
No 285
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.55 E-value=8.4 Score=32.58 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQ-----IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (723)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~ 660 (723)
.|+++.-....+.+.-..++++.+.... -.-+..+|.+++.+.++...-+. -++.+|+.|.+.+.+++..-|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~--~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL--TSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH--HHHHHHHHHHHcCCCCCHHHHH
Confidence 3555555555555555555555443110 02355667777777755554222 2566777777777778888888
Q ss_pred HHHHHHHhhhhh
Q 004922 661 ELIEEWCEGVIQ 672 (723)
Q Consensus 661 ~li~~~~~g~~~ 672 (723)
.+|.+..+|...
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 888877776433
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.19 E-value=21 Score=32.80 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhc--CCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCccc
Q 004922 227 FVREFGKK-RDLVSALRAYDASKKH--LSSPNMYICRT---IIDVCGICGDYMKSRAIYEDLRSQNVTLN 290 (723)
Q Consensus 227 l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 290 (723)
+...|... .+++.|+..|+..-+. |-..+...-.. +...-+..+++.+|+++|+++....+.-+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44444443 5666666666665442 11122222222 23334556788888888888776544333
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.10 E-value=17 Score=31.74 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004922 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~ 457 (723)
.++++.+.+.++.|+...+..+++.+.+.|+...-..++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566667778888888888888888877666555543
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.94 E-value=18 Score=37.26 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.|....-+.|+.++|++.|.+|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4667777889999999999998764332 2345788889999999999999998887654
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.83 E-value=45 Score=36.25 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCCCcccccHHHHHHH-----HhcCCChHHHHHHhhhC---------CCCcchHHHHHHHHHhcC-
Q 004922 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIV---------PRADILFCNFVREFGKKR- 235 (723)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~---------~~~~~~~~~l~~~~~~~~- 235 (723)
...|.++++...+.+.. .....++.. .....+.+.|+.++... ...+.+.+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 45788888877766622 122222222 33456777777777664 123445666777777643
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh----cCChH
Q 004922 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN----AHDLK 306 (723)
Q Consensus 236 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~ 306 (723)
+.+.|..+|......|. |+....-..+..... ..+...|.++|...-+.|.. +...+.+++... ..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56678888888777654 443333222222222 24567888888888877743 233333333221 23677
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
.|..++++....| .|...--...+..+.. +..+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7888888877776 3332222223333434 666666666655554
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.56 E-value=0.41 Score=28.81 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=14.3
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455556666666666666666654
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.32 E-value=31 Score=33.89 Aligned_cols=127 Identities=10% Similarity=0.029 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccHHHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHL-----SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNIYVFNS 296 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~ 296 (723)
++..++.-.+.++++++.|+...+.- .-....+|-.|...|.+..|+++|.-......+ .++.--..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555555666666665543311 011234566666666666666665544433322 122211222222
Q ss_pred HHhh-------hcCChHHHHHHHHHH----HHcCCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 297 LMNV-------NAHDLKFTLEVYKNM----QKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 297 ll~~-------~~~~~~~a~~~~~~m----~~~g~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+... ..|....|.+.-++. ...|-.+ -......+.+.|-..|+.+.|+.-|++.-.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2211 114444444444433 2233221 123344566778888888888777776543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.31 E-value=1.5 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (723)
..|..++..+...|++++|+..|+++++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788999999999999999999999998 554
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.01 E-value=1.8 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666654
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.94 E-value=1.6 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
..+..+...+...|++++|+..+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=3.9 Score=38.95 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=73.4
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.|.+....+...++........++++...+-++++..... ..++.. -.++++.+ ..-+.++++-++..=++.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~-~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW-YLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh-hhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 3445566666666666666777888888777776421111 112221 12223322 33456788888888888999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
.++++.+|+.+.+.+++.+|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.38 E-value=7.3 Score=40.75 Aligned_cols=124 Identities=11% Similarity=0.085 Sum_probs=85.2
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+.++|-.++|+++ -..|+. .+.+.++ .|+.+.|.++..+ .++..-|..|+.+..
T Consensus 624 le~~g~~e~AL~~-------s~D~d~-----rFelal~-------lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 624 LESQGMKEQALEL-------STDPDQ-----RFELALK-------LGRLDIAFDLAVE-------ANSEVKWRQLGDAAL 677 (794)
T ss_pred hhhccchHhhhhc-------CCChhh-----hhhhhhh-------cCcHHHHHHHHHh-------hcchHHHHHHHHHHh
Confidence 4566666665554 123332 4555555 6999999887654 345566889999999
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
..+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|. .|. -.-+|...|+++++.+++..-
T Consensus 678 ~~~~l~lA~EC~~~a~d----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcccchhHHHHHHhhcc----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 99999999999887644 77788888888888776666666666543 222 223456789999888887653
No 297
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.35 E-value=50 Score=34.28 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=123.5
Q ss_pred HHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 004922 180 VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM 256 (723)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 256 (723)
.|+-...+|-+......++..+.+.-+....+.++..+ ..+-.++..+++.|... ..++-..+|+++.+..+ -|+
T Consensus 55 g~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDv 132 (711)
T COG1747 55 GIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDV 132 (711)
T ss_pred HHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhH
Confidence 34433444555556666777777666666555555553 44557888999999988 67888899998888654 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--c---cHHHHHHHHhhhcCChHHHHHHHHHHHHc-CCCcChhhHHHH
Q 004922 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--L---NIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNIL 330 (723)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~---~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l 330 (723)
..-..|...|-+ ++.+.+...|.....+=++ . =...|.-+......+.+....+...+... |...-...+.-+
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 445555555544 8888888888887655222 1 13467777776677888888888877653 333345556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 331 l~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
-.-|....++++|.+++..+.+. -..|...-..++..+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~-----d~k~~~ar~~~i~~lR 250 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH-----DEKDVWARKEIIENLR 250 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh-----cchhhhHHHHHHHHHH
Confidence 67888889999999999977763 2344444445554443
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.78 E-value=69 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.033 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-----HHHHHHHHHH--HHHhCCHHHHHHHHHH
Q 004922 409 ANAGLVEQAMHLFEEMLQAGC-EPN-----SQCCNILLQA--CVEACQFDRAFRLFRS 458 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~ll~~--~~~~g~~~~a~~l~~~ 458 (723)
+-.+++..|...+..+.+..- .|+ ...+...+.| +...|+.+.|...|.+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 346889999999998886421 111 2223333332 3356999999999973
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.70 E-value=13 Score=33.11 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l 158 (723)
.-+.++|++.+|..-|..+++.++.-.. -. ..-.+.+-..++.+.+.++.|++-..+.++ +.|. ...+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~--e~-rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pt------y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTST--EE-RSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPT------YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccH--HH-HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCch------hHHHH
Confidence 3444555555555555555555432111 10 011112333344455555555555555554 3331 11122
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhc
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEF 184 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (723)
.+-+..+-+...+++|+.-|.++++.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 22222333345555555555555443
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.54 E-value=24 Score=29.96 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDV---FTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
...++++++..+++.+.- +.|+. .++...+ +...|+|.+|..+|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrv------LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV------LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH------hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 357899999999999987 34443 3455444 788999999999999998764
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.27 E-value=72 Score=35.28 Aligned_cols=181 Identities=11% Similarity=0.025 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHHh-hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc
Q 004922 70 RNDYYADMASKLA-KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (723)
Q Consensus 70 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 148 (723)
....+-.++..|. ...+++.|+..+++.....-.++-...-... -.-++..+.+.+... |...+++.++.--....
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~--~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC--QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 4566677788777 5588999999999887775443322221111 112344455555555 88888887764111111
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHH
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (723)
..+...+..+ ++...+. .+++..|++.++.+........+.. ..++..++
T Consensus 135 ~~w~~~frll-~~~l~~~-~~d~~~Al~~L~~~~~~a~~~~d~~----------------------------~~v~~~l~ 184 (608)
T PF10345_consen 135 SAWYYAFRLL-KIQLALQ-HKDYNAALENLQSIAQLANQRGDPA----------------------------VFVLASLS 184 (608)
T ss_pred hhHHHHHHHH-HHHHHHh-cccHHHHHHHHHHHHHHhhhcCCHH----------------------------HHHHHHHH
Confidence 1112233332 1111111 2677778887777654332111110 12222222
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 004922 229 RE--FGKKRDLVSALRAYDASKKHL---------SSPNMYICRTIIDVC--GICGDYMKSRAIYEDLR 283 (723)
Q Consensus 229 ~~--~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 283 (723)
.+ ..+.+..+++.+..+.+.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 234555666766666653221 124566777777754 45677777777666654
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.64 E-value=10 Score=29.18 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
.-+..+-++.+....+.|++....+-+++|-+.+++..|.++|+.++.. ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-----~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-----CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----ccCchhhHHHHH
Confidence 3456677777777888999999999999999999999999999988742 222344555554
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.62 E-value=3.2 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666666666666666654
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.47 E-value=2.7 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 101 (723)
..+++.++..|...|++++|+.++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999988763
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.03 E-value=7.3 Score=30.31 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 567 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555555444
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.82 E-value=3.8 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004922 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
..+++.|...|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3467777788888888888888887765
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.71 E-value=15 Score=35.20 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CcccHHHHHHHHhhhc-CChHHHHHHHHHHHHcCCCcChhh
Q 004922 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMAS 326 (723)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~g~~~~~~~ 326 (723)
|......+-..++..-....+.+.+...+-.++... ..|+.. -.++++.+- -+++.++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 333444455555555555677777777777666541 112211 112222222 255667777777777777788888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
++.+|+.+.+.+++.+|.++.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777776666554
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.61 E-value=47 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=43.2
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
+..+.++|+.-|++.++..++-..|. ..++-.+|....+.|++++-.+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34578999999999999865555554 55667788889999999998888887764
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.53 E-value=16 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566677777778889999999999999999999999999999886
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.48 E-value=23 Score=27.44 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 627 (723)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.. +..+..+|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 44455666666666667777777777777777777777777777765521 22244456655543
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.48 E-value=43 Score=35.48 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
-.|+++.|-.++..+. ....+.++..+.+.|-.++|+++-.. || +-|. +....|+++.|.++.
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D-------~d-~rFe--lal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD-------PD-QRFE--LALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC-------hh-hhhh--hhhhcCcHHHHHHHH
Confidence 4466666655443322 23445555666666666666554311 11 1111 111234455554444
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
.+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 332 3566788888888888888888888876553 345555566667666555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 393 GVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
|.. |.-..+|...|+++++.+++..
T Consensus 722 g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 432 2233355667888887776654
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.46 E-value=18 Score=32.23 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=65.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
+-+.+.|++++|..-|.....+...-.-..-...|..-..++.+.+.++.|+.-..+.++.++. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456788999999888888774211101112345666677888899999999888888876543 233333445578888
Q ss_pred CCHHHHHHHHHHHHHc
Q 004922 412 GLVEQAMHLFEEMLQA 427 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~ 427 (723)
.++++|+.-|..+...
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8999999999888876
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.17 E-value=45 Score=30.09 Aligned_cols=79 Identities=8% Similarity=-0.020 Sum_probs=58.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCC
Q 004922 557 ACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH---YQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 557 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
-+.+.|+ +.|.+.|-++...+.--++...-.|..-| ...+.+++..++-+..+ .+-.+|+..+.+|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 77888888888766554555555555444 47799999999988874 3447889999999999999998
Q ss_pred hHHH
Q 004922 634 LHEV 637 (723)
Q Consensus 634 ~~~a 637 (723)
.+.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 7764
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.81 E-value=12 Score=33.24 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh
Q 004922 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 155 (723)
.++..+...|++++|+..++..+..-.+ +.+..+.. .++.+.....|.+++|+..++.....+-.+ ...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~----lRLArvq~q~~k~D~AL~~L~t~~~~~w~~------~~~ 162 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAA----LRLARVQLQQKKADAALKTLDTIKEESWAA------IVA 162 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHH----HHHHHHHHHhhhHHHHHHHHhccccccHHH------HHH
Confidence 4456667778888888887777655222 22222222 356666777888888888877666533222 011
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
.+-..+ +...|+-++|+..|+..+...
T Consensus 163 elrGDi---ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 163 ELRGDI---LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHhhhH---HHHcCchHHHHHHHHHHHHcc
Confidence 111111 222677778888777777654
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.39 E-value=29 Score=30.57 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 564 VEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSK----R-------LKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
+++|+.-|++.+. +.|+ ..++..+..+|...+ + +++|.+.|++..+ .+|+..+|+.-+..+.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 3444444555544 5677 467777777776543 2 4556666666665 5899999999988753
Q ss_pred CChHHHHHHHHHHHHHHHcCCC
Q 004922 632 GSLHEVQQCLAVYQDMWKAGYK 653 (723)
Q Consensus 632 g~~~~a~~a~~~~~~m~~~g~~ 653 (723)
+|-++..++.+.+..
T Consensus 125 -------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 -------KAPELHMEIHKQGLG 139 (186)
T ss_dssp -------THHHHHHHHHHSSS-
T ss_pred -------hhHHHHHHHHHHHhh
Confidence 244477777777654
No 316
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.34 E-value=43 Score=30.83 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CC-----------CCCCHHHHHHHHHHHHHcCCHHHH
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DG-----------MSPDVVAYTTAIKVCVRSKRLKQA 602 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~li~~~~~~g~~~~A 602 (723)
+.+-....+++-+..-..+++ +...|++..|..-+..-.. .| -.|.+.....++..|. .+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHH
Confidence 333333344444444444433 2356666666666554432 11 1234444444444333 3455555
Q ss_pred HHHHHHHHHCCCCC
Q 004922 603 FSLFEEMKHYQIQP 616 (723)
Q Consensus 603 ~~~~~~m~~~g~~p 616 (723)
.++++++-+.|+.|
T Consensus 258 ~~il~~lw~lgysp 271 (333)
T KOG0991|consen 258 LKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHcCCCH
Confidence 55555555555444
No 317
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.03 E-value=67 Score=30.87 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCcChhhHHHHHHHHHH-cC-ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC
Q 004922 320 VMADMASYNILLKACCL-AG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTP 396 (723)
Q Consensus 320 ~~~~~~~~~~ll~~~~~-~~-~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p 396 (723)
+--|..+...+++.... .+ ....-.++.+.+.. ..| -.++..+...++..+++.++|..-.++++..... ++.-
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~--t~~-~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~ 236 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS--TFS-KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGN 236 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh--ccc-cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC
Confidence 44566777777776665 22 22223334444432 122 3567778888899999999999999999887755 5666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHH
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEE-----MLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~ 441 (723)
|...|..+|....+.|+..-...+.++ +++.++..+...-..+-.
T Consensus 237 D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 237 DPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred CCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 888899999999999998766655543 223344555544444433
No 318
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.60 E-value=59 Score=31.63 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccc----HH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLN----IY 292 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~g~~~~----~~ 292 (723)
.++......||+-|+-+.|++.+..-.+ .|.+.|+..+..-+.. |....-+.+-++..+.+.+.|-.-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455566667777777777766654332 3444455444433332 2233333444455555555543211 33
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQ 316 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~ 316 (723)
+|..+-....+++.+|-.+|-+..
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 444444444455555555555443
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.55 E-value=23 Score=31.62 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|.......|.+++|+.+++.....+. .......-.+++...|+-++|+.-|......+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45556666666666666666554221 12223334455666666666666666666654
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.39 E-value=1e+02 Score=32.75 Aligned_cols=122 Identities=9% Similarity=-0.023 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTIT 400 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~ 400 (723)
+..+|+..+..-.+.|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+--++ |....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-----cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-----CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-----HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 4567777788888888888888888876520 1111123434444444447777777777665544322 23333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhCCHHHHH
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQFDRAF 453 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~ 453 (723)
+.+.+ .-..|+++.|..+++.+...- |+..- -..-+....+.|+.+.+.
T Consensus 371 ~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 371 LEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 33332 234578889998888887763 44321 122233344566666665
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.43 E-value=22 Score=32.05 Aligned_cols=42 Identities=17% Similarity=-0.013 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 376 AKWWQMALKVKEDMLSA---GVTPNTITWSSLINACANAGLVEQA 417 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a 417 (723)
..+.+++..++...++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444555555444432 2234445555555555555555544
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.40 E-value=4.3 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSE 101 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 101 (723)
++-.++..+.+.|++++|...|++++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34567788888999999999999999883
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.95 E-value=1.6e+02 Score=34.27 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=70.5
Q ss_pred CcChhhHHH----HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004922 321 MADMASYNI----LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 321 ~~~~~~~~~----ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (723)
.|+...+.. ..+-+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+-.++... .
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr~~l~~a~ql~~~---~ 995 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWREALSLAAQLSEG---K 995 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHHHHHHHHHhhcCC---H
Confidence 445444443 344444667777777777654331 23456778888999998888877532 1
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 397 NTI--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 397 ~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
|.. +-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|.++-..
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 222 2356777778888888888777766542 22334455666677777766543
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.44 E-value=3.9 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHH
Q 004922 73 YYADMASKLAKDGRLEEFAMIVE 95 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~ 95 (723)
....++..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678899999999999999876
No 325
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.37 E-value=98 Score=31.41 Aligned_cols=124 Identities=10% Similarity=-0.020 Sum_probs=73.3
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhc-CCChHHHHHHhhh-CCCCcchHHH---H
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN-KPDVNLAIRYACI-VPRADILFCN---F 227 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~-~~~~~~~~~~---l 227 (723)
..+++|+.+...+..+|+...|.+++++++-.-. ..+...+.. ..+...+..-+.- .+.|...|.+ .
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4566777776667778999999998888652110 000000100 0000000000000 1233333433 5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG-ICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 284 (723)
+..+.++|-+..|+++-+-+...+..-|....-.+|+.|+ +.++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 7888999999999999999988766557777777777654 66788777777776554
No 326
>PRK09687 putative lyase; Provisional
Probab=75.31 E-value=84 Score=30.57 Aligned_cols=125 Identities=8% Similarity=-0.030 Sum_probs=56.6
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC----HHHHHHHHHHHHHCCCCC
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----WQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~----~~~a~~~~~~m~~~~~~p 396 (723)
.+|..+....+.++...|..+-. ..+..+.. .+|...-...+.++...|+ ..++...+..+... .+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~-------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVF-RLAIELCS-------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHH-HHHHHHHh-------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 34555555556666655543222 22222221 2344555555556666665 24566666655333 23
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 397 NTITWSSLINACANAGLV-----EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
+...-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~ 167 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINL 167 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHH
Confidence 444444444444443321 122222222222 33555555566666665553 344444333
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.80 E-value=99 Score=31.18 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
....+|..+...+.+.|.++.|...+..+.+.+... ++.+.-.-.+..-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678899999999999999999999988754211 334444455666678999999999887776
No 328
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=63 Score=30.05 Aligned_cols=56 Identities=20% Similarity=0.086 Sum_probs=31.5
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHh
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (723)
++++.|-.+...|++-++++.-.+++... |.++-.+..-+++.+..=+.++|.+-|
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~ 287 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADL 287 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 34554545555678888887777777655 555555554444444444444444433
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.49 E-value=84 Score=30.24 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCC
Q 004922 544 LSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE-----MKHYQIQPN 617 (723)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~ 617 (723)
-.++..+...++..++..+++.+-.++|+..... +..-|...|..+|+.....|+..-..++..+ +++.|+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 4456666666777777777777777777766553 4445666777777777777776665555543 224445544
Q ss_pred HHHHHHHHH
Q 004922 618 LVTYITLLR 626 (723)
Q Consensus 618 ~~~~~~ll~ 626 (723)
...-..+-+
T Consensus 278 ~~L~~~L~~ 286 (292)
T PF13929_consen 278 DELRSQLSE 286 (292)
T ss_pred HHHHHHHHH
Confidence 444444433
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.21 E-value=1.4e+02 Score=32.58 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHHcC
Q 004922 528 DYYRVKALMNEMRTVG 543 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~ 543 (723)
+...|...++...+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 3445555555555555
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.36 E-value=6.6 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
..|..+...+.+.|++++|...|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778899999999999999999999887
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.95 E-value=58 Score=27.69 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=73.4
Q ss_pred HHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 004922 535 LMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILKIMREDG-----MSPDVVAYTTAIKVCVRSKR-LKQAFSLF 606 (723)
Q Consensus 535 l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~ 606 (723)
....|.+.+..++.. ..|.++.-.+.-++..-...+++.+.-.. -..+...|.+++.+.....- .--+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 334555566666654 46888888888888888888888875310 02355679999999876655 45678889
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 607 EEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 607 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
.-|++.+.+++..-|..+|.++.+.-..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 9999888999999999999998776443
No 333
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=72.92 E-value=1.3e+02 Score=31.54 Aligned_cols=169 Identities=5% Similarity=0.028 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
..++.-.-+..+...-++.-.+..+ +.||-. .|..|.. -......++.++|++..+.|- ..+..- .
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s-----~ 238 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKS-----Q 238 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchh-----h
Confidence 3455555566666666666666665 334432 2332222 234567889999988776531 000000 0
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
.....-..++.+..+...+-..+-..+..++-+.|+.++|.+.|.++.+. -....+......|+.++...+.+.++.
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke---~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE---FPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh---CCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 00000011122222222223333445666777889999999999998752 101113346788999999999999999
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 004922 384 KVKEDMLSAGV-TPNTITWSSLINACA 409 (723)
Q Consensus 384 ~~~~~m~~~~~-~p~~~~~~~li~~~~ 409 (723)
.++.+-.+... +.-..+|+..+--+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHH
Confidence 99988754322 222456766554433
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=72.46 E-value=78 Score=28.97 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCcccHHHHHHHHh--hhcCChHHHH
Q 004922 234 KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~--~~~~~~~~a~ 309 (723)
.+.+..+...+......... .....+......+...+++..+...+...... ........+..... ...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666654322 13567788888889999999999999887753 11222223322222 2336778888
Q ss_pred HHHHHHHHcCCCcChhhHHHHHH-HHHHcCChHHHHHHHHHHHhhhhcCCc-cccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 310 EVYKNMQKLGVMADMASYNILLK-ACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~A~~~~~~~~~~~~~g~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
+.+.........+ ......... .+...|+++.|...+...... ... ......+......+...++++.+...+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 8888887754332 222223333 788999999999999998541 100 1233344444555778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.............+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99876322136778888888999999999999999988763 33 344444444555667788888888776654
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.44 E-value=94 Score=29.85 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh----------------------cCCccccH
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA----------------------KGVLKLDV 363 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----------------------~g~~~~~~ 363 (723)
..|+++|.-+.... .-+.+-+-++.++....+..+|...+....-..+ .|...-|+
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 34666666665542 2233344455555555555555544332211100 12244566
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 364 FTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPN-----------------TITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 364 ~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.-|...+...-..+ .++++.++....... .-|+ ..++......|..+|.+.+|.++.+...
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66666665554332 355666655554321 1111 1234455668889999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
... +.+...+-.++..+...|+--.+..-++.+..
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 864 66778889999999999998888877776654
No 336
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.18 E-value=93 Score=29.72 Aligned_cols=99 Identities=10% Similarity=0.145 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 004922 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK----HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (723)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~ 657 (723)
....+..+..-|++.++.+.+.++..+.. ..|.+.|. +-+.++.-.-.|+..-+++-++..+.|.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 35567777788888888888887776544 35555554 3444444445677777788888888888888766533
Q ss_pred HHHHHHHHH---Hhhhhhhhhcccccch
Q 004922 658 YLKELIEEW---CEGVIQDKNQNQGEVT 682 (723)
Q Consensus 658 ~~~~li~~~---~~g~~~~a~~~~~~~~ 682 (723)
.--..-.+. ...++++|..++.+++
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 211122221 2256667766655444
No 337
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.06 E-value=1e+02 Score=30.10 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMK----HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLK 660 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~ 660 (723)
.+-....-||+.|+.+.|.+.+.+-. ..|.+.|...+..=+..+ .++.+-+.+-++..+.|.+.|...+...=-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf--y~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF--YLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh--hccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 44555567899999999988877643 567777777665555444 566666777788888888888877644322
Q ss_pred HHHHHHHh---hhhhhhhcccccc
Q 004922 661 ELIEEWCE---GVIQDKNQNQGEV 681 (723)
Q Consensus 661 ~li~~~~~---g~~~~a~~~~~~~ 681 (723)
.+-++... .++++|..++.+.
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22233222 5666776665433
No 338
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.91 E-value=1.3e+02 Score=31.38 Aligned_cols=165 Identities=9% Similarity=0.043 Sum_probs=102.3
Q ss_pred cccHHHHHHHHhhhcCC--hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 288 TLNIYVFNSLMNVNAHD--LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 288 ~~~~~~~~~ll~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
..|.....+++..++.+ ..-.+.+-.+|...| .+-..|-.++.+|... ..++-..+++++.+ ..-|...
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve------~dfnDvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE------YDFNDVV 133 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH------hcchhHH
Confidence 35666667777776643 344566667777765 4666777788888777 45566677776665 2334444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTP-----NTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNIL 439 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l 439 (723)
...-+..+...++.+.+...|.+....-++. -...|.-+.... ..+.+..+.+..++... |...-...+.-+
T Consensus 134 ~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 134 IGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 4444444555577778888887776542210 112455444321 34566667666666543 444455566666
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
-.-|....++++|++++..+.+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc
Confidence 677888889999999998777654
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.67 E-value=46 Score=25.98 Aligned_cols=83 Identities=11% Similarity=-0.021 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (723)
.++|..+-+.+... ++..-...|| ..+...|+|++|..+.+.+ ..||...|-+|-....|-.+....-+.+
T Consensus 21 HqEA~tIAdwL~~~---~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLK---GESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcC---CchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45555555555443 2111222222 3466788888888887765 3688888888887777777777777777
Q ss_pred HHHcCCCcChhhH
Q 004922 315 MQKLGVMADMASY 327 (723)
Q Consensus 315 m~~~g~~~~~~~~ 327 (723)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 77766 3444444
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.48 E-value=1.2e+02 Score=30.61 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
....+|..+...+.+.|.++.|...+.++...+... ++...-.-.+.....|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888999999999999999999988743221 334444556777789999999999988776
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.13 E-value=11 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKH 250 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~ 250 (723)
.|..+|...|+.+.|..+++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777888888777777754
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.08 E-value=41 Score=33.52 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=81.3
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
+.++++.+|++ ......++....+....++.....++++...+ .+.-|...+..... -...-.++....+|.
T Consensus 54 lerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~------~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 54 LERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS------NFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH------HhccCcHHHHHHHHH
Confidence 55568888977 88888899999999999999999999999832 33434333332111 223334556666665
Q ss_pred HHhhc------CC----CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC
Q 004922 138 KLNEL------GV----APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (723)
Q Consensus 138 ~~~~~------~~----~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 187 (723)
+.++. +. .+........+.++++.|.-+.+.|..+.|+.+++.+++.+..
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 54432 11 0111223356667777777788899999999999999887764
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.97 E-value=2.2e+02 Score=33.41 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=54.2
Q ss_pred CcCHHHHHHHHHHHhhc------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-
Q 004922 512 KPTTTTYNILMKACCTD------YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV- 584 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~~~------~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 584 (723)
.|+...+.....+|+.+ .++|.-+|...-+ ..--+.+|-.+|+|++|..+-.++.. .-|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence 67877777777777643 2334333333211 12235677777888888887777652 11222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 -AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 -~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
+-..|+.-+...++.-+|-++..+..+
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 225677778888888888888877653
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.39 E-value=2.3 Score=36.42 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666777777788888888766555677888888888888776777776661 111334566777778888
Q ss_pred HHHHHHHHHHhhh
Q 004922 449 FDRAFRLFRSWTL 461 (723)
Q Consensus 449 ~~~a~~l~~~~~~ 461 (723)
++.+.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 8888887776543
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.81 E-value=15 Score=33.29 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccch
Q 004922 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (723)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 154 (723)
..-++.+.+.+++.+|+.+.+.-++. +|+.-... ..++..+|-.|+|++|..-++-.-+ +.|+...-.++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~R------hflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~l 74 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGR------HFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASL 74 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccch------hHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHH
Confidence 34567888999999999999998888 66643322 2345558999999999999988776 67755544444
Q ss_pred hhhhH
Q 004922 155 FKLLK 159 (723)
Q Consensus 155 ~~~l~ 159 (723)
|..++
T Consensus 75 yr~li 79 (273)
T COG4455 75 YRHLI 79 (273)
T ss_pred HHHHH
Confidence 44443
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=69.44 E-value=1.1e+02 Score=29.50 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcCChH
Q 004922 619 VTYITLLRARSRYGSLH 635 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~ 635 (723)
.+|.-|+.+++..|+.+
T Consensus 322 K~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSE 338 (412)
T ss_pred HhhhHHHHHHhcCChHH
Confidence 35777777777777754
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.92 E-value=1.1e+02 Score=29.22 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=72.1
Q ss_pred HhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHH
Q 004922 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (723)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (723)
....+.+++++|+..|.+++..|+.-+..+.+.-=..+++...-+...|++..-.+......+ ...-
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m~~ 77 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AMED 77 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HHHH
Confidence 335688999999999999999888776654444444445544445556665544433322111 0111
Q ss_pred HhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 201 CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 201 ~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
+....-..--..+++++|.....+...+..+... ++-|.+--..+.+ ...-..++..+.+.|++.+|+.+..
T Consensus 78 ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--iewA~rEkr~fLr------~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 78 FTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--IEWADREKRKFLR------LELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred hcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHHHHHHHHHHH------HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111111222234555555444433333332221 1111111112221 1223456777888899988888766
Q ss_pred HHH
Q 004922 281 DLR 283 (723)
Q Consensus 281 ~m~ 283 (723)
.+.
T Consensus 150 ~ll 152 (421)
T COG5159 150 PLL 152 (421)
T ss_pred HHH
Confidence 543
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.72 E-value=14 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 258 ICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666667777777777777776654
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.57 E-value=7.3 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
+..+...+.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455555566666666666666554
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.32 E-value=40 Score=34.47 Aligned_cols=121 Identities=9% Similarity=0.040 Sum_probs=69.2
Q ss_pred hcCCHHHHHH-HHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHH
Q 004922 268 ICGDYMKSRA-IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (723)
Q Consensus 268 ~~g~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~ 346 (723)
..|+...|.+ ++.-++...-.|+.....+.+....|+++.+.+.+....+. +-....+...+++...+.|++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 3466555443 44444444445676666677766777777777766655432 123445566677777777777777777
Q ss_pred HHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
-+.|.. +. + -+...........-..|-++++.-.|+++.....
T Consensus 380 a~~~l~---~e-i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 380 AEMMLS---NE-I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHhc---cc-c-CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 666654 21 1 1223333333333445667777777777765543
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.41 E-value=24 Score=23.27 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=16.7
Q ss_pred hcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 630 RYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIE 664 (723)
Q Consensus 630 ~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~ 664 (723)
+.|-..+++. .+++|.+.|+..+...|+.+++
T Consensus 14 ~~GlI~~~~~---~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKP---LLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHH---HHHHHHHcCcccCHHHHHHHHH
Confidence 4454443333 5555666666666555555544
No 352
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.28 E-value=1.5e+02 Score=29.94 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
.+.-+..-|..+|+++.|.+.|.+.+.-...+ +..+..|..+|..-.-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45667788889999999999999876532221 233445666666667778888777777766553
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.73 E-value=2.5e+02 Score=31.79 Aligned_cols=233 Identities=14% Similarity=0.035 Sum_probs=126.0
Q ss_pred HHHcCChHHHHHHHHHHHhhhhcCCccccHH---HHHHHHH-HHHccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 004922 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF---TYSTIVK-VFADAKWWQMALKVKEDMLSA----GVTPNTITWSSLI 405 (723)
Q Consensus 334 ~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~---~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li 405 (723)
.....++++|..+..++......+...+... .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3466889999999999887543322222222 3444322 234578899999988877653 2334566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHhCCHHHHHH--HHHHhhhhhcccccCCcCCCchhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL-----QACVEACQFDRAFR--LFRSWTLSKTQVALGEDYDGNTDR 478 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~--l~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
.+..-.|++++|..+..+..+..-.-++..+.... ..+...|....+.. .|........
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l-------------- 570 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL-------------- 570 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh--------------
Confidence 88888999999999888776542233443333222 23445663333222 2222111100
Q ss_pred hhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHH----HHHHHHHcCCCCCHHH--HH
Q 004922 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA----LMNEMRTVGLSPNHIS--WT 552 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~----l~~~m~~~~~~p~~~~--~~ 552 (723)
.++ .--.+-..+...++.++.+ .+.+.. -+.--......|-... +.
T Consensus 571 ----~q~-----------------------~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~ 622 (894)
T COG2909 571 ----EQK-----------------------PRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALS 622 (894)
T ss_pred ----hhc-----------------------ccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHH
Confidence 000 0002233445555555554 322222 1111112112222222 23
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 004922 553 ILIDACGGSGNVEGALQILKIMREDGMSP----DVVAYTTAIKV--CVRSKRLKQAFSLFEE 608 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 608 (723)
.|+......|+.++|...++++......+ +...-...+.. ....|+.+++.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 67778888999999999999998743333 33333333333 3357888887777665
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=2.3e+02 Score=31.43 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=16.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 629 (723)
+.+++++|+++.++ +-|...|..||.-+.
T Consensus 673 el~die~AIefvKe------q~D~eLWe~LI~~~l 701 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE------QDDSELWEDLINYSL 701 (846)
T ss_pred HhhCHHHHHHHHHh------cCCHHHHHHHHHHhh
Confidence 34555555554442 356666777766653
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.66 E-value=28 Score=22.95 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
.+.|-++++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 346666666777777777777666666666554
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.54 E-value=19 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 261 TIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 261 ~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999998654
No 357
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.95 E-value=86 Score=26.22 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh-hhhhhhhcccccchHhhhcccCCh
Q 004922 615 QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK-ANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRP 692 (723)
Q Consensus 615 ~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 692 (723)
.++..+--.+-.++.++.+.+++++.+.+++++.+...+ -+....-.|--++.+ +.++.+..++..+.......+ .
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~--Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR--Q 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH--H
Confidence 677777777888888888888888888888888872222 222333334444455 888888888776655533222 2
Q ss_pred hhhHHHHHHHHHHhhhhhhh
Q 004922 693 QSLLLEKVAVHLQKSAAENL 712 (723)
Q Consensus 693 ~~~l~~~~~~~~~~~~~~~~ 712 (723)
-..|-+.+-+...|.+-..+
T Consensus 107 a~~Lk~~ied~itkegliGm 126 (149)
T KOG3364|consen 107 ALELKETIEDKITKEGLIGM 126 (149)
T ss_pred HHHHHHHHHHHHhhcceeee
Confidence 23333444455555554433
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.74 E-value=26 Score=24.63 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
++...++++.++. ...|-.-.-.+|.+|...|++++|.++.+.+..
T Consensus 6 ~~~~~~~~~~lR~------~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA------QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555555544 234555556667777777777777777776653
No 359
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.60 E-value=2.2 Score=36.52 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
+|..+.+.+.......+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 46666777888888888888887665566788888888888887777877777721 11333456666666666
Q ss_pred hHH
Q 004922 634 LHE 636 (723)
Q Consensus 634 ~~~ 636 (723)
+++
T Consensus 86 ~~~ 88 (143)
T PF00637_consen 86 YEE 88 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.86 E-value=25 Score=26.04 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 004922 560 GSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSL 605 (723)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 605 (723)
...+.++|+..|....+.-..|. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766432222 23566677777777777766655
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.59 E-value=62 Score=29.55 Aligned_cols=58 Identities=10% Similarity=-0.062 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 389 (723)
.+..+..+.+.+.+.+++.....-.+. -+.|..+-..++..||-.|+|++|..-++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555666666665555443330 1233344555555666666666665554444
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.09 E-value=71 Score=24.60 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=37.9
Q ss_pred hhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCH
Q 004922 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY 272 (723)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 272 (723)
...-|.+..+...+...+...|++++|++.+-.+.+..... +...-..|+..+.-.|.-
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34446666777888888888889999888888887754332 344556666666655553
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.36 E-value=69 Score=33.35 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=35.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCH
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILLQACVEACQF 449 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~ 449 (723)
+..|+.+- ++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34455443 333444555554322 223334445566654 334444455444322 112234445566777
Q ss_pred HHHHHHHH
Q 004922 450 DRAFRLFR 457 (723)
Q Consensus 450 ~~a~~l~~ 457 (723)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 66655554
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.60 E-value=64 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 566 GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 566 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
+..+-++.+....+.|++......+.+|.+.+|+..|.++|+-.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555666666677777777777777777777777777776653
No 365
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.51 E-value=52 Score=32.14 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (723)
+-|.+.|.+++|...|..... +.| |.+++..-..+|.+..++..|+.=....+..+- .-+..|+.-+.+-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHH
Confidence 467788999999999887766 444 778888888888888888777665555543310 012334444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC
Q 004922 411 AGLVEQAMHLFEEMLQAGCEPN 432 (723)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~ 432 (723)
.|...+|.+-.+..+.. .|+
T Consensus 178 Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HhhHHHHHHhHHHHHhh--Ccc
Confidence 55555665555555543 555
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.50 E-value=1.1e+02 Score=28.65 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=60.1
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCCHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSA 240 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A 240 (723)
++.+.+++++|++.+-.. .. ..+....+++++...++.+.|.++++...+..... ..++.. ..++.+.+|
T Consensus 87 W~LD~~~~~~A~~~L~~p---s~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHP---SL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HHhChHhHHHHHHHhCCC---CC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHH
Confidence 456779999999887431 11 13445578888888899999999988875544333 222333 666888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (723)
...-....+. -....+..++..+...
T Consensus 160 f~~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 160 FSFQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHhCchh---hhHHHHHHHHHHHHHH
Confidence 8766554431 1133555666555433
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.37 E-value=1.6e+02 Score=28.21 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=15.3
Q ss_pred ccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 190 ELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
++..+..++..+.+.+++.+|+.+|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34556666677777777776666553
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.17 E-value=82 Score=24.70 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (723)
.++|..|-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+-+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45666666655554321 2223333345566777787777776665 3677777766543 356776766666666
Q ss_pred HHHCCCCCCHHHHH
Q 004922 609 MKHYQIQPNLVTYI 622 (723)
Q Consensus 609 m~~~g~~p~~~~~~ 622 (723)
|...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 66554 44444443
No 369
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.70 E-value=31 Score=33.60 Aligned_cols=88 Identities=10% Similarity=-0.051 Sum_probs=59.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (723)
-|.+.|.+++|++.|..-....+. +.+++..-..+|.+...+..|..--......+ ..-...|+.-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 488999999999999988765322 78888888899999988887776555554432 1123345554555555566666
Q ss_pred HHHHHHHhhh
Q 004922 452 AFRLFRSWTL 461 (723)
Q Consensus 452 a~~l~~~~~~ 461 (723)
|.+-++..+.
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 6666655443
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.58 E-value=90 Score=29.03 Aligned_cols=42 Identities=0% Similarity=-0.270 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (723)
..+++.|+..|.+.+... |....+|..-+-.+.+..+++.+.
T Consensus 23 ~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~ 64 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVE 64 (284)
T ss_pred hhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhh
Confidence 467788888888877755 666555555444444444444443
No 371
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.03 E-value=2e+02 Score=33.55 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHH-HHHHHHHhhhhcC
Q 004922 323 DMASYNILLKACCLAGNTVLAQ-EIYGEVKHLEAKG 357 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~-~~~~~~~~~~~~g 357 (723)
....|+.|-..+...+++.+|- -+|+...+++..+
T Consensus 1101 k~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1101 KKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred cccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
Confidence 4456666667777777777654 4566655544444
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.85 E-value=15 Score=20.51 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
..+..++..+...|++++|...++..+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677888999999999999999988766
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.48 E-value=97 Score=29.59 Aligned_cols=58 Identities=5% Similarity=-0.122 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|++++..++|.+++...-+--+.--+....+...-|-.|.+.+.+..+.++-..-...
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 7888899999888876655443211223455566666688888888877777666554
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.17 E-value=58 Score=22.05 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=17.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (723)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (723)
.-++.+.|++++|.+..+.+.+ ++|+-.-...|
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 3455666666666666666665 45654444433
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.14 E-value=1.5e+02 Score=28.36 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=21.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----hCCHHHHHHHH
Q 004922 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-----ACQFDRAFRLF 456 (723)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~l~ 456 (723)
.|.+.+.+..+.++-..-.+.--.-+..-|..+.+.|.. .|.+++|.++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344555555554444444332111222224444444433 35555555444
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.63 E-value=1.4e+02 Score=26.44 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 379 WQMALKVKEDMLSAGVTPNT-ITWSSLINACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+++|..-|++.+.. .|+- .++..+..+|...+ .+++|...|++..+. .|+..+|+.-+....+
T Consensus 51 iedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 34444455555543 4443 45666666665433 255566666666665 8999999999887743
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.98 E-value=41 Score=24.93 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSP-N-MYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
+..| ..++.++|+..|....+.-..+ + -.++..++.+|...|++.++++.-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 6678899999999988754433 2 246778888899999988877653
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.66 E-value=1e+02 Score=24.49 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (723)
...++|..+.+.+...+. -...+--..+..+...|+|++|+ . .......||...|-+|-....|-.+.+...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l--~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L--LPQCHCYPDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H--HHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H--hcccCCCccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 456788888888777533 12222223334577889999882 1 122234688888888888888877778777777
Q ss_pred HHHcC
Q 004922 315 MQKLG 319 (723)
Q Consensus 315 m~~~g 319 (723)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76655
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.93 E-value=24 Score=33.92 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=33.0
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 580 SPDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (723)
Q Consensus 580 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 625 (723)
.||.. -|+..|....+.||+++|++++++.++.|+.--..+|-.-+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34544 45788888888888888888888888888766555554433
No 380
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.45 E-value=3.3e+02 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhcccccchHhhhcccCChhhhHHHHHHHHHHh
Q 004922 659 LKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQK 706 (723)
Q Consensus 659 ~~~li~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 706 (723)
|..+.+.+-+|+..+|.+.+..+... ..-+.+=+..|+...+.-+..
T Consensus 499 yreF~~~~~~~~~~~Aa~~Lv~Ll~~-~~~Pk~f~~~LL~d~lplL~~ 545 (566)
T PF07575_consen 499 YREFYELYDEGDFREAASLLVSLLKS-PIAPKSFWPLLLCDALPLLES 545 (566)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHHHhCC
Confidence 44444444447777776666655532 223334555555555555544
No 381
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.73 E-value=85 Score=33.75 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHH-HHHCCCCCCHHHHHHHHHH
Q 004922 553 ILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTTAIKVCVRSKRLKQ--AFSLFEE-MKHYQIQPNLVTYITLLRA 627 (723)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~-m~~~g~~p~~~~~~~ll~~ 627 (723)
+|+++|...|++..+.++++.+... |-+.-...||..|+.+.+.|.++- ..+-.++ +.+..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7899999999999999999999864 333446678999999999997653 2222333 3355677788888888877
Q ss_pred HHh
Q 004922 628 RSR 630 (723)
Q Consensus 628 ~~~ 630 (723)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 382
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=52.58 E-value=3.8e+02 Score=30.87 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004922 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (723)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (723)
.+++++. .|+...++.+++++.+.|..
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 4444443 46677777777777766654
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.73 E-value=1.1e+02 Score=25.17 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+..+.++.+...++.|++.....-++++-+.+++..|.++|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556677777788899999999999999999999999999998876
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.51 E-value=79 Score=28.64 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..|+...|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777777777777777777777765
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.47 E-value=48 Score=34.11 Aligned_cols=96 Identities=16% Similarity=0.014 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc----chHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.+.++.|+.++.++++.. |+.+.++..-..++.+.+++..|+.-+..+.... ..|.--..++.+.+.+.+|+..
T Consensus 17 ~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 689999999999999866 8888888888888899999998888776654433 3344445566666777888887
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH
Q 004922 244 YDASKKHLSSPNMYICRTIIDVCG 267 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~ 267 (723)
|+.... +.|+..-....+.-|-
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHH
Confidence 777765 4576665556655443
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.98 E-value=2.1e+02 Score=26.71 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=60.0
Q ss_pred HcCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 541 TVGLSPNHISWTILIDACGG--SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
..++++. |..++.++.. .+++++|.+.+-.- .+.|+- -.-++.++...|+.+.|+++++.+.-.. .+.
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~ 141 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSP 141 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCH
Confidence 4455543 3344555543 46777777776322 122221 2247777888899999999998874321 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 619 ~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
.....++.. ..+|.+-| |+.+-+...+ .-....+..+++.+.+
T Consensus 142 ~~~~~~~~~-La~~~v~E---Af~~~R~~~~---~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTE---AFSFQRSYPD---ELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHH-HHcCCHHH---HHHHHHhCch---hhhHHHHHHHHHHHHH
Confidence 333444444 33466444 5544333322 1114577777777765
No 387
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.86 E-value=4e+02 Score=29.55 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=42.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINA 407 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~ 407 (723)
.....+.-.|.++.|.+.+-.... ...|...+...+.-|.-.+-..... ..+..... .|...-+..||..
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 345667778999999998776322 3455555555554433222111111 33332211 1112557788888
Q ss_pred HHh---cCCHHHHHHHHHHHHHc
Q 004922 408 CAN---AGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 408 ~~~---~g~~~~a~~~~~~~~~~ 427 (723)
|.+ ..+..+|.++|-.+...
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHhccCHHHHHHHHHHHHHc
Confidence 876 46788888888877654
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.83 E-value=2.5e+02 Score=29.14 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=7.7
Q ss_pred HHHHHHHHHHcCCC
Q 004922 640 CLAVYQDMWKAGYK 653 (723)
Q Consensus 640 a~~~~~~m~~~g~~ 653 (723)
+.+-++.|....+.
T Consensus 299 C~~ei~~mk~~~i~ 312 (413)
T PHA02875 299 CIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHhhccC
Confidence 44455666665444
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.39 E-value=3.1e+02 Score=27.90 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=57.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCccc
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS--SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---------NVTLN 290 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---------g~~~~ 290 (723)
..+..+.+.|..+|+++.|++.|.+....-. +.....|-.+|..-...|+|..+.....+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4567788999999999999999988554311 123445667777777788888888777776654 12233
Q ss_pred HHHHHHHHhhhcCChHHHHHHH
Q 004922 291 IYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 291 ~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
...+..+.....+++..|.+.|
T Consensus 231 l~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444454444433
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.71 E-value=2.6e+02 Score=27.75 Aligned_cols=96 Identities=9% Similarity=-0.060 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004922 529 YYRVKALMNEMRTVGL----SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (723)
...+.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4678888888877422 34555666777888888887776677776664 4577788899999988999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHH
Q 004922 605 LFEEMKHYQ-IQPNLVTYITLLRARS 629 (723)
Q Consensus 605 ~~~~m~~~g-~~p~~~~~~~ll~~~~ 629 (723)
+++.....+ +++.. . ..++.++.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~ 246 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLA 246 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHh
Confidence 999888754 54433 3 34444544
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.64 E-value=1.2e+02 Score=24.31 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888876
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.60 E-value=1.6e+02 Score=32.26 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
....+.+..+-.-.+.....-++..|.+.|-.+.|.++.+.+-.. .....-|..-+.-+.+.|+...+..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~------~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR------LLKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444443322334455566777788888888888877766541 11233455556666666666665555555
Q ss_pred HH
Q 004922 389 ML 390 (723)
Q Consensus 389 m~ 390 (723)
+.
T Consensus 464 ll 465 (566)
T PF07575_consen 464 LL 465 (566)
T ss_dssp --
T ss_pred HH
Confidence 44
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.24 E-value=1.5e+02 Score=30.47 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=38.4
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHH--hhccchHHHHHHHHHHHHhc
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR--LLDSGEVEMFVGLMEVLEEF 184 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~--~~~~g~~~~A~~~~~~~~~~ 184 (723)
..+..+...++|..|.++|+.+.+. +.++.. +..+...|.. ..+.-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREE-----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhh-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444566888888888888888875 443322 3334333333 24567788888888876553
No 394
>PRK10304 ferritin; Provisional
Probab=46.85 E-value=1.8e+02 Score=25.49 Aligned_cols=105 Identities=10% Similarity=0.142 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
.+.|.++++.+...|..|.......- ...+....++|+.....+ .--...++.++..+.+.+|+. ...
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~~p------~~~~~s~~e~~~~~l~~E-----~~vt~~i~~l~~~A~~~~D~~-t~~ 118 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVESP------FAEYSSLDELFQETYKHE-----QLITQKINELAHAAMTNQDYP-TFN 118 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCCCC------ccccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCHh-HHH
Confidence 46678888888887766553321100 113333445555554421 123445677777777776663 333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 422 (723)
+++.++...++ .......++.-....|+...+.-.++
T Consensus 119 fl~~fl~EQve-Ee~~~~~l~~~l~~~~~~g~~~y~~D 155 (165)
T PRK10304 119 FLQWYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFID 155 (165)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhCCCcchHHHHh
Confidence 44455443222 33444455555555554434444444
No 395
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.25 E-value=49 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004922 588 TAIKVCVRSKRLKQAFSLFEEMK 610 (723)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~ 610 (723)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555666666666666655554
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.01 E-value=93 Score=21.09 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004922 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (723)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (723)
.-.++-++.+.|++++|....+.+++. +|+.-+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 345677889999999999999999999 776544
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.74 E-value=1.7e+02 Score=24.20 Aligned_cols=86 Identities=8% Similarity=-0.082 Sum_probs=45.0
Q ss_pred hhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
.+-..+.-.....++++..+. ...+.. +..- .-+++.|..+++.-+ ++.++|..|...++.......|..-+..+
T Consensus 35 ~~p~~~~~~~L~~lLer~~~~-f~~~~~-Y~nD-~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 35 NYPSGGKQSGLLELLERCIRK-FKDDER-YKND-ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp HCTTCCCCHHHHHHHHHHHHH-HTTSGG-GTT--HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHH
T ss_pred HCCCCCchhHHHHHHHHHHHH-HhhhHh-hcCC-HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 344445666666777776664 222211 1111 134566666755443 88999999988887655444444334434
Q ss_pred hcCCChHHHHH
Q 004922 202 VNKPDVNLAIR 212 (723)
Q Consensus 202 ~~~~~~~~A~~ 212 (723)
...|++.+|.+
T Consensus 110 e~~~~~~~A~~ 120 (126)
T PF08311_consen 110 EKRGNFKKADE 120 (126)
T ss_dssp HHTT-HHHHHH
T ss_pred HHcCCHHHHHH
Confidence 33333333333
No 398
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.22 E-value=4.7e+02 Score=29.02 Aligned_cols=90 Identities=14% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC
Q 004922 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~ 633 (723)
...+.-+|+++.|.+++-+- .+...|.+++...+. ..|-+.-....-..+.... -.|...-+..||..|.+.=.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHH---HTT------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 44555678888888877661 122334444443333 2332222222113332110 11222567777777777555
Q ss_pred hHHHHHHHHHHHHHHH
Q 004922 634 LHEVQQCLAVYQDMWK 649 (723)
Q Consensus 634 ~~~a~~a~~~~~~m~~ 649 (723)
....+.|+.++--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4556667776655544
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.18 E-value=1.5e+02 Score=26.33 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 564 VEGALQILKIMREDGMSPD--VVAY-----TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 633 (723)
++.|..+|+.+.+.--.|. .... ...+..|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 4556666666554322221 1111 2234567788888888888888775 4555555555555555554
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.07 E-value=4.2e+02 Score=28.44 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=80.6
Q ss_pred hccCccchHHHHHHHHhhcCCCcccc-----cccchhhhhHHHHHHhhccchHHHHHHHHHHHH-------hcCCCCccc
Q 004922 124 IREGRIDCVVGVLKKLNELGVAPLEL-----FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE-------EFRLPVKEL 191 (723)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ 191 (723)
.+...|++|...|...... ..|+.. ..+..++.|+..+.....+|+.+.|.+++++.+ .....|...
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 4566778888888777664 333321 234556677776666555777777666655432 222111110
Q ss_pred ccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-
Q 004922 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN---FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG- 267 (723)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~- 267 (723)
. -++=-..|.+...|.. -+..+.++|-+..|.++-+.+......-|+...-.+|+.|+
T Consensus 328 ~------------------cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 328 N------------------CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred c------------------ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 0 0000000222233333 36667788888888888877777654446667777777654
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004922 268 ICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~ 284 (723)
+..+++=.+++++....
T Consensus 390 rareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 390 RAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHhHHHHHHHHHHHHh
Confidence 55677777777776643
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.02 E-value=3e+02 Score=26.68 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----HcCCCCCHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-----KAGYKANDTYL 659 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~-----~~g~~p~~~~~ 659 (723)
+++.....|..+|.+.+|.++.++..... +.+...|..++..++..|+--.+.+ -+++|. +.|+..|..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~k---hyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIK---HYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhh---HHHHHHHHHHHHhCCCcchhHH
Confidence 45566677888888999988888887642 3477788888888888888444333 333332 36877776654
Q ss_pred H
Q 004922 660 K 660 (723)
Q Consensus 660 ~ 660 (723)
+
T Consensus 357 e 357 (361)
T COG3947 357 E 357 (361)
T ss_pred H
Confidence 3
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.70 E-value=2.8e+02 Score=26.19 Aligned_cols=59 Identities=5% Similarity=-0.101 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 284 (723)
-++..+.+.++++++...+.++...+...+..-.|.+-.+|-.. |....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 35667778889999999999988877666766666666666333 455555666655543
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.05 E-value=64 Score=35.91 Aligned_cols=156 Identities=11% Similarity=0.033 Sum_probs=89.9
Q ss_pred HHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 119 ~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
+|..+.+.|-++-|+...+.=. ..|++-+. +|+.+.|++.-.. .++...|..|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~------------tRF~LaLe-------~gnle~ale~akk-------ldd~d~w~rLg 679 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDER------------TRFELALE-------CGNLEVALEAAKK-------LDDKDVWERLG 679 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcc------------hheeeehh-------cCCHHHHHHHHHh-------cCcHHHHHHHH
Confidence 3444556666666666543211 23444444 8999999886554 34567789999
Q ss_pred HHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
.....+|+..-|+-.|+.... |..|--.|.-.|+.++-.++-+....+ -|..+.. ..-.-.|++++-..+
T Consensus 680 e~Al~qgn~~IaEm~yQ~~kn----fekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~~---qnalYl~dv~ervkI 749 (1202)
T KOG0292|consen 680 EEALRQGNHQIAEMCYQRTKN----FEKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQF---QNALYLGDVKERVKI 749 (1202)
T ss_pred HHHHHhcchHHHHHHHHHhhh----hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHHH---HHHHHhccHHHHHHH
Confidence 999999999998888877543 444445566778888777766555432 2322211 111235677666666
Q ss_pred HHHHHhCCCcccHHHHHHHHhhh-cCChHHHHHHHHHHHHc
Q 004922 279 YEDLRSQNVTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKL 318 (723)
Q Consensus 279 ~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~a~~~~~~m~~~ 318 (723)
++..-.. | . +.+.+. .|.-+.|.++.++....
T Consensus 750 l~n~g~~---~-l----aylta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 750 LENGGQL---P-L----AYLTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHhcCcc---c-H----HHHHHhhcCcHHHHHHHHHhhccc
Confidence 6543211 1 1 111222 24455666666666553
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.88 E-value=1.4e+02 Score=22.71 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. .| +..|..+++++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 355667777777643 33333333333335677888888888876 43 235777777777777665554
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.72 E-value=70 Score=24.80 Aligned_cols=60 Identities=17% Similarity=0.064 Sum_probs=38.1
Q ss_pred HhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 81 LAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
..+.|++.+|...+.+..+... .+.. ...+.. ++-++.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-~~~~~~-all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS-NSGLAY-ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh-hHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3457999999777777665532 1110 001111 2234555678899999999999998874
No 406
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.59 E-value=3.1e+02 Score=26.45 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLS----AGVTPNTITWSS-LINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
...+..+..-|++.++.+.+.+..++... .|.+.|+..--+ |.-.|....-+++-++..+.|.+.|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34556666666766666666665554433 344444332111 1122233333455555555555554
No 407
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.71 E-value=1.9e+02 Score=23.69 Aligned_cols=107 Identities=15% Similarity=0.025 Sum_probs=56.9
Q ss_pred hHHHHHH--HHhhcCChHHHHHHHHHHHHhc-CCh-h-hHHHHhhHHH-HHhHHHhhhccCccchHHHHHHHHhh----c
Q 004922 73 YYADMAS--KLAKDGRLEEFAMIVESVVVSE-GNV-S-KFASMLSLEM-VASGIVKSIREGRIDCVVGVLKKLNE----L 142 (723)
Q Consensus 73 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~-~~p-~-~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~~~~----~ 142 (723)
+|-.|.. --.+.|-+++|..-+.++.+.. .-| . .|.+--.-.. ...+..++...|++++++.--+..+. .
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4444433 3455699999999888876553 223 2 2333222222 24566778899999987766655543 2
Q ss_pred C-CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHH
Q 004922 143 G-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVL 181 (723)
Q Consensus 143 ~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~ 181 (723)
| +.-+. -...+..+.+-...+...|+.++|+..|+..
T Consensus 89 GEL~qde--GklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 89 GELHQDE--GKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp --TTSTH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccccccc--chhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2 22211 1223344444455566678888888888754
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.67 E-value=3.9e+02 Score=27.40 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHHhC
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVCGIC--GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~--g~~~~a~~~~~~m~~~ 285 (723)
.+..+.+.++|..|.++|+.+... ++++.. .+..+..+|... -++.+|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555789999999999999886 544443 455565666554 4678888888877654
No 409
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=3.6e+02 Score=26.78 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH--HHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY--STIVKVFADAKWWQMALKVKEDMLS-----AGVTPNTI 399 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 399 (723)
++...-+.++.++|.+.++++...-..- -.|+...| ..+..++...|+..++.+.+++... .+++|+++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 4445555667777777777776532222 23444433 3344555566666666666666555 45555443
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.94 E-value=23 Score=34.57 Aligned_cols=84 Identities=13% Similarity=-0.048 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|.+++|++.|...+... |.....+..-..++...+++..|++-++.. +++..-|-.-..+....|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 688999999998887755 666666666667777777777776655543 12222222222333344566666666
Q ss_pred HHHHHhcCCC
Q 004922 244 YDASKKHLSS 253 (723)
Q Consensus 244 ~~~~~~~~~~ 253 (723)
|....+.+..
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 6665555443
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.16 E-value=1.6e+02 Score=27.53 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=59.9
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 137 (723)
.+.++|..+|.. ..+|..=+-.+.+..+|+.+..-..++++. .|+..-....++.+ +.....+++|+..+.
T Consensus 32 ~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~------~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 32 CYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQW------LLQSKGYDEAIKVLQ 102 (284)
T ss_pred HHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHH------HHhhccccHHHHHHH
Confidence 577889999999 888888888888899999999888888887 66654443334333 778899999999999
Q ss_pred HHhhc
Q 004922 138 KLNEL 142 (723)
Q Consensus 138 ~~~~~ 142 (723)
+..+.
T Consensus 103 ra~sl 107 (284)
T KOG4642|consen 103 RAYSL 107 (284)
T ss_pred HHHHH
Confidence 88654
No 412
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.08 E-value=6.1e+02 Score=28.89 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 197 IVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
+=+.|...|+++.|.++.+.-|+.. .++..-++.|.+.++|..|-++|-++.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3456777777777777766553322 4455556777777888888888777643
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.23 E-value=1.5e+02 Score=26.42 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 87 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
++.|+.+++...+....|......+..-.-...+..|.+.|.+++|.++|++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4567777776666544443332222222334566678899999999999999996
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.75 E-value=1.9e+02 Score=28.13 Aligned_cols=60 Identities=7% Similarity=0.169 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004922 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (723)
Q Consensus 531 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (723)
.-.++|..+...++.|.-+.|..+.-.+...=.+...+.+|+.+.. |..-|..|+..||.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 3467889999999999999999888888999999999999999986 34447778877764
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.53 E-value=75 Score=33.62 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|+...|.+++..+.-.. +.........+++.+...+....|-.++.+ .-..+.++..+..+|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~-p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLA-PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccC-hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 566666666665554322 112233344455555555555555444333 234457777888888889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHH
Q 004922 244 YDASKKHLSSPNMYICRTIIDV 265 (723)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~ 265 (723)
|.+..+... .+...-+.|...
T Consensus 699 ~~~a~~~~~-~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTT-KCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCC-CChhhHHHHHHH
Confidence 988776432 245555665553
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.20 E-value=1.6e+02 Score=31.88 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=50.7
Q ss_pred HHHHHHh--hcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 520 ILMKACC--TDYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVE------GALQILKIMREDGMSPDVVAYTTA 589 (723)
Q Consensus 520 ~ll~~~~--~~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 589 (723)
++..+|. +++.++.++++..... |-+.-...||..|..+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7788876 4678999999988864 33333457888899999999753 4445555444 55678888888
Q ss_pred HHHHHH
Q 004922 590 IKVCVR 595 (723)
Q Consensus 590 i~~~~~ 595 (723)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776543
No 417
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.18 E-value=34 Score=35.17 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=56.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.++|..+|+. ..+|..-..++.+.+.+..|+.=+.++++. +|......+.. ..++.+.+++.+|+..|+.
T Consensus 27 ysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rr------g~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 27 YSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRR------GTAVMALGEFKKALLDLEK 97 (476)
T ss_pred HHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhc--Cchhhheeeec------cHHHHhHHHHHHHHHHHHH
Confidence 55678999988 777777779999999999999999999888 56532221111 1124456677777777777
Q ss_pred HhhcCCCcccc
Q 004922 139 LNELGVAPLEL 149 (723)
Q Consensus 139 ~~~~~~~p~~~ 149 (723)
... +.|+..
T Consensus 98 ~~~--l~Pnd~ 106 (476)
T KOG0376|consen 98 VKK--LAPNDP 106 (476)
T ss_pred hhh--cCcCcH
Confidence 665 677654
No 418
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.83 E-value=52 Score=27.22 Aligned_cols=54 Identities=13% Similarity=-0.121 Sum_probs=27.7
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (723)
+++.|..+++. .++..++|.-|...++-..-...|..-+..+...|++.+|.++
T Consensus 68 yLkiWi~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 68 YLKIWLKYADN--CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555442 3456778888877776544433333333333334444444333
No 419
>PRK10941 hypothetical protein; Provisional
Probab=37.78 E-value=1.3e+02 Score=29.08 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
..+.+-..+.+.++++.|+...+.++.. .|+........+.+ |.+.|.+..|..=|+..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll------~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLI------YAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHHHHHh
Confidence 4445566788999999999999999999 67766655556666 89999999999999998874
No 420
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.76 E-value=49 Score=25.03 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC
Q 004922 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLV---TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655 (723)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~ 655 (723)
+...+..|+. ++++.+.+.|..++.. -++.+.. .+..|+.+ +++.+.+.|..++
T Consensus 30 l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~-------~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 30 LHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNLE-------IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHH-------HHHHHHHTTT-TT
T ss_pred HHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCHH-------HHHHHHHcCCCCC
Confidence 3334455654 3444455555555443 2333333 34455433 4455666676665
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.02 E-value=4.7e+02 Score=26.63 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHhcCChhhHHHHhh-----HHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 86 RLEEFAMIVESVVVSEGNVSKFASMLS-----LEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
.+.++...|..++... +|.....++. ...+-.+...+.++|+...|.+++++++
T Consensus 9 ~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555544 5544333222 2333345555889999999999988875
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.87 E-value=2.2e+02 Score=22.87 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4466777777777777777777777665
No 423
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.47 E-value=97 Score=29.85 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=49.1
Q ss_pred cccCCcchhhhH--HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 63 VRRDLSSRNDYY--ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 63 ~~~~p~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
...+|..-..+. ...+.-..+.|+.+.|..+|+.+++. .|+....++..+.+ .-..++.-+|-.+|-+++
T Consensus 106 te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f------~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 106 TENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALAL--APTNPQILIEMGQF------REMHNEIVEADQCYVKAL 177 (472)
T ss_pred cccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHH------HHhhhhhHhhhhhhheee
Confidence 355566522222 23344566789999999999999999 78877776666555 334466667777776666
Q ss_pred hcCCCc
Q 004922 141 ELGVAP 146 (723)
Q Consensus 141 ~~~~~p 146 (723)
. +.|
T Consensus 178 t--isP 181 (472)
T KOG3824|consen 178 T--ISP 181 (472)
T ss_pred e--eCC
Confidence 4 555
No 424
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.18 E-value=5.6e+02 Score=27.26 Aligned_cols=89 Identities=8% Similarity=0.026 Sum_probs=46.5
Q ss_pred cCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (723)
Q Consensus 509 ~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 588 (723)
.|+..+......+.....++...|..+++++...+ ....++..+...+ |. ++...+..
T Consensus 196 Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------------g~-~~~~~~~~ 253 (484)
T PRK14956 196 ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------------GY-HGIEFLTS 253 (484)
T ss_pred cCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-------------------CC-CCHHHHHH
Confidence 34455555555555555566666666666544321 1112222211111 22 24455556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
++.+....+....|+.++.+|.+.|..|...
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6665554445567888888888777766544
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.21 E-value=39 Score=28.03 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (723)
.-|.-.+|..+|..|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44667789999999999998887 467777643
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.97 E-value=2.1e+02 Score=22.07 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 004922 370 VKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~ 390 (723)
.......|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666666554
No 427
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=34.71 E-value=3.6e+02 Score=25.42 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS--RYGSLHEVQQCLAVYQDMWKAGYKANDTYLKEL 662 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~l 662 (723)
.+..++......+++..++++++.| .|. ....=|+.+. ..+..++....++.+..+.+.+- |.....++
T Consensus 112 ~f~~lL~~~~~~~dy~~~~~~Lksl-----sPS--~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~--dfElvQa~ 182 (237)
T PF04192_consen 112 EFTRLLRSASESEDYSEFLEYLKSL-----SPS--AIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRR--DFELVQAY 182 (237)
T ss_pred HHHHHHHhhcccccHHHHHHHHHhC-----Chh--HHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCC--CHHHHHHH
Confidence 3445555555556666655555544 232 2222234443 33444444444455555554433 44455566
Q ss_pred HHHHHh
Q 004922 663 IEEWCE 668 (723)
Q Consensus 663 i~~~~~ 668 (723)
+..|.+
T Consensus 183 l~vFLk 188 (237)
T PF04192_consen 183 LSVFLK 188 (237)
T ss_pred HHHHHH
Confidence 666655
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.22 E-value=4.4e+02 Score=25.45 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHH-HHHHHcCCHHHHHH
Q 004922 552 TILIDACGGSGNVEGALQILKIM----REDGMSPDVVAYTTAI-KVCVRSKRLKQAFS 604 (723)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~ 604 (723)
.-++..+.+.|.+.+|+.+.+.+ .+..-+|+..+...+= .+|....++.++..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~Kska 186 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKA 186 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhh
Confidence 45788889999999998876544 4444455544332221 34444444444433
No 429
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.93 E-value=4.7e+02 Score=26.16 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 564 VEGALQILKIMREDGMSPDV----VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 629 (723)
.++...+++.++.. -|+. .-|-++.......|.++.++.+|++++..|.+|-...-.+++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46777777777764 4554 4677888888889999999999999999999998888777777765
No 430
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=33.44 E-value=4.2e+02 Score=25.05 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=45.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 004922 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY-Q-IQPNLVTYITLLRARSRYGSLHEV 637 (723)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~g~~~~a 637 (723)
-.|+++.++..++.+... .-|...+...+.--|+-|.++...=+|.+.+.. + +-..+...--+...+...|+.--.
T Consensus 22 LNr~Fd~vL~~~R~~p~~--emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip 99 (267)
T PF05476_consen 22 LNREFDDVLAELRQIPVD--EMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIP 99 (267)
T ss_pred hhhhHHHHHHHHHcCcHh--HhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCH
Confidence 345666666655555332 123333444444445556666666666665521 1 122333334555555566665555
Q ss_pred HHHHHHHHHHHHcC
Q 004922 638 QQCLAVYQDMWKAG 651 (723)
Q Consensus 638 ~~a~~~~~~m~~~g 651 (723)
++.+..|+.+-..+
T Consensus 100 ~ql~~hy~~~y~~~ 113 (267)
T PF05476_consen 100 SQLYMHYQKFYGKG 113 (267)
T ss_pred HHHHHHHHHHhccC
Confidence 56666666665444
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.17 E-value=4.1e+02 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=24.4
Q ss_pred CcCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCHH
Q 004922 512 KPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHI 549 (723)
Q Consensus 512 ~p~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~~ 549 (723)
.|.+.....++..|. ++.++|.+++.++-+.|..|...
T Consensus 236 ~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 456666666666665 36777777777777777766443
No 432
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.53 E-value=4.9e+02 Score=25.50 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCC
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 304 (723)
..++..+.++++.....+.+..+.. ...-...++.+...|++..|++++.+..+.- -...-|+. +.-...+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c-~~~L~~~ 172 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSC-VRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchH-HHHHhHH
Confidence 3456666777777777777777654 3444556666778899999999888776530 00000000 0001112
Q ss_pred hHHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCChHHHH
Q 004922 305 LKFTLEVYKNMQKLG-----VMADMASYNILLKACCLAGNTVLAQ 344 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g-----~~~~~~~~~~ll~~~~~~~~~~~A~ 344 (723)
+++.......+.+.. ..-|+..|..++.+|.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 222222222221110 1456777777777777777655544
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.51 E-value=2.6e+02 Score=23.91 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=10.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 643 VYQDMWKAGYKANDTYLKELIEEWC 667 (723)
Q Consensus 643 ~~~~m~~~g~~p~~~~~~~li~~~~ 667 (723)
+++++.+.|...+..|.-..++.|.
T Consensus 42 i~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 42 LYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 4444444444443333333333333
No 434
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.83 E-value=3.2e+02 Score=23.10 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHccC---CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 361 LDVFTYSTIVKVFADAK---WWQMALKVKEDMLS-AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++..+--.+..++.+.. +..+.+.+++.+.+ ....-......-|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44555555566666554 35566777777775 222223334445555677888888888888777764
No 435
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=4.6e+02 Score=26.06 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC
Q 004922 557 ACGGSGNVEGALQILKIMRED---GMSPDVVAYT--TAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPN 617 (723)
Q Consensus 557 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~ 617 (723)
..-+.++.++|.++++++.+. --.|+.+.|- .+..++...|+.+++.+++++..+ .|+.|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~ 154 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN 154 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh
Confidence 334445666666666666542 2234555443 333445556666666666666554 455553
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.38 E-value=91 Score=30.20 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 545 SPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (723)
Q Consensus 545 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 587 (723)
.||.. -|+.-|..-.+.||+++|+.++++.++.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34544 35788888889999999999999999888764444443
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.82 E-value=1.2e+02 Score=21.60 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004922 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (723)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 630 (723)
.|....++-++..+++..-+++++.++.++.+.|. .+..+|.--++.++|
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666666666666666777777777766653 455555555555544
No 438
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=30.64 E-value=1.7e+02 Score=24.28 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=9.2
Q ss_pred cccCChhhhHHHHHHHH
Q 004922 687 TNSQRPQSLLLEKVAVH 703 (723)
Q Consensus 687 ~~~~~~~~~l~~~~~~~ 703 (723)
..++.+|..|....+..
T Consensus 102 ~~~~~~W~~L~~L~L~l 118 (125)
T PF14840_consen 102 NYQGDPWDELEQLSLLL 118 (125)
T ss_dssp STTSTHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHH
Confidence 34556676665555443
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.52 E-value=2e+02 Score=26.01 Aligned_cols=32 Identities=13% Similarity=-0.136 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
.|+...|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666665555554
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.32 E-value=2.6e+02 Score=26.56 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHHhcCCH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML-----SAGVTPNTITWSSLINACANAGLV 414 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~li~~~~~~g~~ 414 (723)
+..|.+.|..... ...-....-.+..-|.+.|++++|.++|+.+. +.=..+...+...+..++.+.|+.
T Consensus 161 L~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Q ss_pred HHHHHHHHHHHHc
Q 004922 415 EQAMHLFEEMLQA 427 (723)
Q Consensus 415 ~~a~~~~~~~~~~ 427 (723)
+..+.+--++...
T Consensus 235 ~~~l~~~leLls~ 247 (247)
T PF11817_consen 235 EDYLTTSLELLSR 247 (247)
T ss_pred HHHHHHHHHHhcC
No 441
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.18 E-value=7e+02 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=13.2
Q ss_pred CCcccHHHHHHHHhhhcCChHHHHHHHHHH
Q 004922 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (723)
Q Consensus 286 g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (723)
|+..+......+.....|+...|+.++++.
T Consensus 197 gi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 197 NVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226 (484)
T ss_pred CCCCCHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 442
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=30.14 E-value=5.8e+02 Score=25.63 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=14.0
Q ss_pred ccccCCCcCHHHHHHHHHHHhhcHHHHH
Q 004922 506 DKRFSFKPTTTTYNILMKACCTDYYRVK 533 (723)
Q Consensus 506 ~~~~~~~p~~~~~~~ll~~~~~~~~~a~ 533 (723)
.+..|+.-+..+...++..+..+...+.
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~ 182 (343)
T PRK06585 155 LAEAGLRITPDARALLVALLGGDRLASR 182 (343)
T ss_pred HHHCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3444455555555555555554443333
No 443
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.61 E-value=3e+02 Score=24.25 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004922 539 MRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600 (723)
Q Consensus 539 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 600 (723)
+...|+.++..-.. ++..+...+..-.|.++++.+.+.+..++..|.---+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~~-IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRLE-VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33445554444332 22333333444556666666666555555555444555555555443
No 444
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.56 E-value=6.7e+02 Score=26.21 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHH
Q 004922 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKF 307 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~ 307 (723)
..+...|.++.+.+.+...... +.....+...+++...+.|++++|..+-.-|....+. |.+.+..+.-.-..+-+++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence 3344556666666665554331 2233445566666666666666666666666655443 2222111111111134555
Q ss_pred HHHHHHHHHHc
Q 004922 308 TLEVYKNMQKL 318 (723)
Q Consensus 308 a~~~~~~m~~~ 318 (723)
+...|+++...
T Consensus 410 ~~~~wk~~~~~ 420 (831)
T PRK15180 410 SYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhcc
Confidence 55555555543
No 445
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.97 E-value=4.2e+02 Score=24.54 Aligned_cols=102 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc-------cchHHHHHHHHhhcCCCcccccccc
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-------IDCVVGVLKKLNELGVAPLELFDGS 153 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~ 153 (723)
+.....+++|+..|.-++-.. .-...........+-.+.=.|-..|+ ...|.+.|.+..+..-.|.......
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
.+..|+..+..- .|+.++|...|.+++..+
T Consensus 166 ~l~YLigeL~rr--lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRR--LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHcCC
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.90 E-value=4.4e+02 Score=23.81 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS--------------SPNMYICRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
.+--+++-.|-+..++.+.+++++.|.+..+ .+--..-|.....+.+.|..+.|+.+++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445677788888899999999988866421 1223345666677888888888888776
No 447
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.58 E-value=84 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 598 RLKQAFSLFEEMKHYQIQPNLVTYITL 624 (723)
Q Consensus 598 ~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (723)
.++.|..+|++.+. +.|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 45677777777776 35776666543
No 448
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.34 E-value=7.4e+02 Score=26.26 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-CCCCCCHH
Q 004922 544 LSPNHISW-TILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV--RSKRLKQAFSLFEEMKH-YQIQPNLV 619 (723)
Q Consensus 544 ~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~g~~p~~~ 619 (723)
..|+..|+ +.+++.+...|-..+|..++..+... ..|+...|.-+|..=. ..-+..-+.++|+.|.. .| .|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 34666655 56777778889999999999999875 2467778888775421 12337778889998874 45 7888
Q ss_pred HHHHHHHHHHhcCChHHHHH
Q 004922 620 TYITLLRARSRYGSLHEVQQ 639 (723)
Q Consensus 620 ~~~~ll~~~~~~g~~~~a~~ 639 (723)
.|.-.+.-=...|..+.+..
T Consensus 532 lw~~y~~~e~~~g~~en~~~ 551 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQ 551 (568)
T ss_pred HHHHHHHhhccCCCcccccH
Confidence 88888777777787655433
No 449
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.47 E-value=8.1e+02 Score=26.43 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=43.7
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-------------SPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 541 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
+.|+..+......++.. ..|++..|..+++++...|- .++......++.++. .|+.+.++++++
T Consensus 193 ~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 44565555555544443 24777777777776655431 123333444455444 477888888888
Q ss_pred HHHHCCCCCC
Q 004922 608 EMKHYQIQPN 617 (723)
Q Consensus 608 ~m~~~g~~p~ 617 (723)
+|...|..|.
T Consensus 270 ~l~~~g~~~~ 279 (509)
T PRK14958 270 RLVEQGVDFS 279 (509)
T ss_pred HHHHcCCCHH
Confidence 8888777664
No 450
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=1e+03 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVK 351 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~ 351 (723)
|..|+..|...|+.++|++++.+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Confidence 5555555555555555555555444
No 451
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.09 E-value=1.4e+02 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=24.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 632 (723)
..|+.+.+.+++++..+.|..|.......+..+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 36777777777777776677666666666666554433
No 452
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.88 E-value=2.1e+02 Score=29.77 Aligned_cols=129 Identities=11% Similarity=0.035 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChh-hHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhh-------
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNE------- 141 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~------- 141 (723)
..+.....+.+-..|++..|..++...--.. .|. ..+.-+...++ +++...+.+.|.+.-+..+|.++++
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666667899999998876542211 111 11111112222 4555567778888877777777664
Q ss_pred cCCCcccc---cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 142 LGVAPLEL---FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 142 ~~~~p~~~---~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
.|+.|... ..+..+.++-+.-..+...|++-.|.+.|.+.++.- ..++..|-.++..|.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 35555322 111223333333333444677777777777665422 334445555555544
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.09 E-value=4.5e+02 Score=26.83 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=43.0
Q ss_pred hHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHh--hccchHHHHHHHHHH
Q 004922 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLMEV 180 (723)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~~~ 180 (723)
..+..+...+++..|.++|+.+.+..+.|+.. ..+..+..+|..+ .+.-++++|.+.++.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~---~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNH---TFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhh---hHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35556789999999999999999875555433 3445555554443 466788899998885
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.08 E-value=2.4e+02 Score=19.88 Aligned_cols=16 Identities=25% Similarity=0.184 Sum_probs=7.5
Q ss_pred ccCCHHHHHHHHHHHH
Q 004922 375 DAKWWQMALKVKEDML 390 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~ 390 (723)
..|++=+|-++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3445555555555544
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.29 E-value=3.1e+02 Score=23.42 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
+...+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444555667664433 446677777777778888888888887766666665555555555543
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.29 E-value=55 Score=27.22 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHHHHhh
Q 004922 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS 112 (723)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 112 (723)
.+.+.|.-.+|-..|++|+..|-.|+.|..++.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHH
Confidence 445568889999999999999999999987654
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.28 E-value=7.9e+02 Score=25.58 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-----VEQAMHLFEEMLQAGCE 430 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 430 (723)
.++.+.|+..+..|.+.|..|....-..++.++...|. ..-|...++....-|++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 47788888888888888877665555555555544442 23344555555555644
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.20 E-value=1.6e+02 Score=29.24 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=44.5
Q ss_pred cCCh-HHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 84 DGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 84 ~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
.|-. +++..+++.++.. -|+.-.+ ...+.+.++.....|.+++++.+|+.++..|..|-..
T Consensus 115 eGcp~eei~~~L~~li~~--IP~A~K~---aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieE 176 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKN--IPDAKKL---AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEE 176 (353)
T ss_pred cCCCHHHHHHHHHHHHhc--CchHHHH---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHH
Confidence 3443 3677777777666 5554222 4555677888899999999999999999999998544
No 459
>PRK10941 hypothetical protein; Provisional
Probab=24.70 E-value=6.4e+02 Score=24.35 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQAC 443 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 443 (723)
.+.+-.+|.+.++++.|+++.+.++...+. +..-+.--.-.|.+.|.+..|..-++...+. .-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345556677888888888888888776433 4555666666678888888888777776554 2234444444444433
No 460
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=9.8e+02 Score=26.43 Aligned_cols=137 Identities=11% Similarity=0.045 Sum_probs=77.3
Q ss_pred CcCHHHHHHHHHHH--hh--cHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 512 KPTTTTYNILMKAC--CT--DYYRVKALMNEMRTVGL-SP--NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (723)
Q Consensus 512 ~p~~~~~~~ll~~~--~~--~~~~a~~l~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 584 (723)
++++..+.++--+. ++ +.+-+..+++.+.+++- .. .-.-|-.|.-+....|+-+.+..+.+.....+ .|=..
T Consensus 502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~-~~~~~ 580 (878)
T KOG2005|consen 502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIE-GPIRK 580 (878)
T ss_pred chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhh-hHHHH
Confidence 45666676665543 33 56777777766665432 22 22234455555555666666666666665533 24445
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHH-HCCCC-CCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHHHHcC
Q 004922 585 AYTTAIKVCVRS--KRLKQAFSLFEEMK-HYQIQ-PNLVT---YITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (723)
Q Consensus 585 ~~~~li~~~~~~--g~~~~A~~~~~~m~-~~g~~-p~~~~---~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g 651 (723)
.-+.++..|... |+.-+... +... ..|-. .+... +..+--++...|+-=.++-+++.|..|...|
T Consensus 581 ~~~~lv~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yg 652 (878)
T KOG2005|consen 581 HESILVKSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYG 652 (878)
T ss_pred HHHHHHHHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcC
Confidence 566777766654 45444422 1111 11212 23333 6666677777887655677888999988877
No 461
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.49 E-value=1.1e+03 Score=26.98 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 004922 565 EGALQILKIMRE-DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-------------IQPNLVTYITLLRARSR 630 (723)
Q Consensus 565 ~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~~ll~~~~~ 630 (723)
++..+.+++..+ .|+..+......+... ..|+..+|+.++++....+ -.+|...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhhhhhhhhcccccchHhhhcccCChhhhHHHHHHHH
Q 004922 631 YGSLHEVQQCLAVYQDMWKAGYKAN-------DTYLKELIEEWCEGVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703 (723)
Q Consensus 631 ~g~~~~a~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 703 (723)
|+ ...++.+++++...|+.+. ....+.++..+..+...+......++.......+......++..++++
T Consensus 259 -~d---~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g 334 (830)
T PRK07003 259 -GD---GPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVG 334 (830)
T ss_pred -CC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHHhH
Q ss_pred HHh
Q 004922 704 LQK 706 (723)
Q Consensus 704 ~~~ 706 (723)
..+
T Consensus 335 ~~e 337 (830)
T PRK07003 335 RGE 337 (830)
T ss_pred HHH
No 462
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=24.38 E-value=7.3e+02 Score=24.88 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH-----------HHHHHcCCHHH
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM--SPDVVAYTTAI-----------KVCVRSKRLKQ 601 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li-----------~~~~~~g~~~~ 601 (723)
+-....+.|++.+......|+..+. |+...+..-++++.-... ..+......++ .-+...|+..+
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~ 226 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKK 226 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHH
Confidence 4455556677777777776666655 666666666666653211 22222221111 12335799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRAR 628 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~ 628 (723)
|..+++++...|..| .....++.+-+
T Consensus 227 a~~~l~~L~~~ge~p-~~il~~l~~~f 252 (334)
T COG1466 227 ALRLLRDLLLEGEEP-LKLLAALTRQF 252 (334)
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 999999999988554 44444444443
No 463
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.99 E-value=2.1e+02 Score=20.44 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
|....++.++..+++..-.++++..+.+....|.. +..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44445555555555555555555555555555432 4444444444433
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=1.1e+03 Score=26.97 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=76.8
Q ss_pred HcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHCCCCCC
Q 004922 559 GGSGNVEGALQILKIMRED------GMSPDVVAYTTAIKVCV---------------RSKRLKQAFSLFEEMKHYQIQPN 617 (723)
Q Consensus 559 ~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~---------------~~g~~~~A~~~~~~m~~~g~~p~ 617 (723)
...|++.+|.+.|...+-. .-+-+..-...+|..|+ ..+..+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4678899999888887632 11123333444444442 12344555444444445667774
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhccc
Q 004922 618 --LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQ 678 (723)
Q Consensus 618 --~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~g~~~~a~~~~ 678 (723)
..+..+.+..+.+.+++..| -.+-+++.+.+.+|+..--..-+...+..+..++.++-
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktA---s~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l~ 1141 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTA---AEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYELN 1141 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHH---HHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccccC
Confidence 55667778889999996664 45888899999999988777777777777777777654
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.71 E-value=4.8e+02 Score=25.53 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------hCCHHHH
Q 004922 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----------ACQFDRA 452 (723)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~g~~~~a 452 (723)
.++|+.|...++.|.-.+|..+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46888888888999988888888888888888999999998865 33336666666654 4666666
Q ss_pred HHHHHH
Q 004922 453 FRLFRS 458 (723)
Q Consensus 453 ~~l~~~ 458 (723)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 466
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.62 E-value=9.7e+02 Score=26.60 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004922 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-------------SPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (723)
.+.|+..+......++. ...|++..+..+++++...|- .++......++.++. .|+...+++++
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34566656555555554 234677777777766554321 122333344444444 46777777777
Q ss_pred HHHHHCCCCCC
Q 004922 607 EEMKHYQIQPN 617 (723)
Q Consensus 607 ~~m~~~g~~p~ 617 (723)
++|...|..|.
T Consensus 274 ~~l~~~G~~~~ 284 (618)
T PRK14951 274 DELRLNGLSAA 284 (618)
T ss_pred HHHHHcCCCHH
Confidence 77777665543
No 467
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.56 E-value=1.5e+02 Score=16.57 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHH
Q 004922 597 KRLKQAFSLFEEMKH 611 (723)
Q Consensus 597 g~~~~A~~~~~~m~~ 611 (723)
|+.+.|.++|+++..
T Consensus 1 ~~~~~~r~i~e~~l~ 15 (33)
T smart00386 1 GDIERARKIYERALE 15 (33)
T ss_pred CcHHHHHHHHHHHHH
Confidence 345555556655554
No 468
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.48 E-value=4.9e+02 Score=27.62 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCC
Q 004922 385 VKEDMLSAGVTPN 397 (723)
Q Consensus 385 ~~~~m~~~~~~p~ 397 (723)
+++.+.+.|..++
T Consensus 158 iv~~Ll~~g~din 170 (480)
T PHA03100 158 ILKLLIDKGVDIN 170 (480)
T ss_pred HHHHHHHCCCCcc
Confidence 4444455555443
No 469
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.07 E-value=8.9e+02 Score=25.41 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCc---ccHHHHHHHHhhhc---
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT---LNIYVFNSLMNVNA--- 302 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~---~~~~~~~~ll~~~~--- 302 (723)
+.+++-.++++.+.+.|- +| ....-|+.|.+.+++++|...+++-.+. |++ -.......++....
T Consensus 68 ~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 457777888888877642 23 4445678889999999999999887663 332 22444455555322
Q ss_pred ---CChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 303 ---HDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 303 ---~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+--..+..+++-+...|+.. -..+||. -|++.=-++++...|+.+.+
T Consensus 145 QvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdR 197 (480)
T TIGR01503 145 QIRHGTPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDR 197 (480)
T ss_pred eccCCCCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHH
Confidence 12345677777777777543 3455553 34555566677666665544
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.02 E-value=3.5e+02 Score=20.66 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
++|+-....|+..|+.+|.++++...-+--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777788888888888777666667777777777654
No 471
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.02 E-value=2.7e+02 Score=28.86 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=17.7
Q ss_pred HhHHHhhhccCccchHHHHHHHHh
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
+.+...+...|.++.|..+|.+-+
T Consensus 122 S~laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHh
Confidence 345667889999999999998765
No 472
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.81 E-value=1.8e+02 Score=18.07 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (723)
..|..|...-...++|++|..=|.+++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35778888999999999999999888766
No 473
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.63 E-value=94 Score=29.49 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYN 328 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 328 (723)
.-+|+..+.+++..++. .|+..|-+.+|-+.....++..+++++|...|+ |..|..
T Consensus 193 ~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gv--dilTiG 248 (306)
T COG0320 193 GATYERSLSLLERAKEL--GPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGV--DILTIG 248 (306)
T ss_pred CCcHHHHHHHHHHHHHh--CCCcccccceeeecCCcHHHHHHHHHHHHHcCC--CEEEec
Confidence 35788999999988876 588889999998888888899999999998874 444443
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.63 E-value=9.8e+02 Score=25.76 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 004922 376 AKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.|+...|+.+++++...|..|.
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3778888888888887776543
No 475
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.48 E-value=7.3e+02 Score=26.82 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=92.8
Q ss_pred ccHHHHHHHHhhhcC----ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH-HcCChHHHHHHHHHHHhhhhcCCcccc-
Q 004922 289 LNIYVFNSLMNVNAH----DLKFTLEVYKNMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLD- 362 (723)
Q Consensus 289 ~~~~~~~~ll~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~g~~~~~- 362 (723)
|+..+..+++.-... ..+-+-.++..|.+. +-|--...|. ...|. -.|+...|...+..... ..|-
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~------~~p~~ 640 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNE-AGLYWRAVGNSTFAIACLQRALN------LAPLQ 640 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeec-ccceeeecCCcHHHHHHHHHHhc------cChhh
Confidence 444454554443333 334455666666532 2333333332 23333 46888888888877654 2222
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 363 -VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 363 -~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
-+....|...+.+.|...+|..++.+.+... ....-++..+.+++....+++.|++.|++..+.. ..+...-+.+..
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 1234456666777788889999998887664 3355678889999999999999999999988874 445666666665
Q ss_pred HHH
Q 004922 442 ACV 444 (723)
Q Consensus 442 ~~~ 444 (723)
.-|
T Consensus 719 i~c 721 (886)
T KOG4507|consen 719 IRC 721 (886)
T ss_pred HHH
Confidence 444
No 476
>PRK09857 putative transposase; Provisional
Probab=22.00 E-value=6.1e+02 Score=24.89 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004922 552 TILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (723)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (723)
..++......++.++-.++++.+.+. +.+......++..-+.+.|..+++.++.++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555555555543 222222333444445555555555555555555555443
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.93 E-value=1.3e+03 Score=26.84 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=72.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSP-NMYICRTIIDVCGICGDY--MKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
.-|..|+..|...|+.++|+++|.+..... ..+ -...+-.++..+.+.+.. +-+++.-+........-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 448889999999999999999999987632 111 123345567766666655 666666666555432211222222
Q ss_pred -------------HHhh-hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 004922 297 -------------LMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (723)
Q Consensus 297 -------------ll~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 337 (723)
++.. .....+.+...++.+....-.++..-.+.++..|+..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2221 1235566778888887766566777778888777643
No 478
>PRK09687 putative lyase; Provisional
Probab=21.85 E-value=7.5e+02 Score=24.07 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=69.2
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHH
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
++..+-...+.++.+.++. ++...+-.+.. .+|...-...+.++.+.+ ....+...+..++. .++..+
T Consensus 140 ~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~-------d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~V 208 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE-AAIPLLINLLK-------DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEI 208 (280)
T ss_pred CCHHHHHHHHHHHhccCCH-HHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHH
Confidence 3555555666777766663 44444444442 234445555555555543 23456666666664 336666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
-...+.++.+.|+. .|...+-...+.+ + .....+.++...|+. +|...+..+..
T Consensus 209 R~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 209 RIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 67777777777774 4555555555432 2 234566777777775 56666666553
No 479
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.85 E-value=4.8e+02 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHC
Q 004922 601 QAFSLFEEMKHY 612 (723)
Q Consensus 601 ~A~~~~~~m~~~ 612 (723)
.|.++++.+.+.
T Consensus 35 sa~eI~~~l~~~ 46 (148)
T PRK09462 35 SAEDLYKRLIDM 46 (148)
T ss_pred CHHHHHHHHHhh
Confidence 333444444333
No 480
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=21.81 E-value=4.6e+02 Score=21.67 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHH-cCCCc-ChhhHHHHHHHHHHcCChHHHH
Q 004922 305 LKFTLEVYKNMQK-LGVMA-DMASYNILLKACCLAGNTVLAQ 344 (723)
Q Consensus 305 ~~~a~~~~~~m~~-~g~~~-~~~~~~~ll~~~~~~~~~~~A~ 344 (723)
++.+.+++++..+ .|+.- +..+-..+++...+.|-+++..
T Consensus 38 ~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~ 79 (123)
T TIGR01987 38 FELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDES 79 (123)
T ss_pred HHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHH
Confidence 3444445544333 24321 2344555556566666555443
No 481
>PRK12357 glutaminase; Reviewed
Probab=21.68 E-value=5.4e+02 Score=25.54 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcCCCCC
Q 004922 597 KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG-------SLHEVQQCLAVYQDMWKAGYKAN 655 (723)
Q Consensus 597 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------~~~~a~~a~~~~~~m~~~g~~p~ 655 (723)
+++++++++|-+... +..+......+...++..| ++=..+.+..+..-|...|+.-.
T Consensus 191 ~d~e~~Ld~Yf~qCs--i~vt~~dLA~~ga~LAn~Gv~P~tg~~vls~~~~r~v~a~M~tcGmYd~ 254 (326)
T PRK12357 191 SDVEETLEVYLKQCS--IEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNA 254 (326)
T ss_pred CCHHHHHHHHHHHhc--cceeHHHHHHHHHHHhCCCcCCCCCCEecCHHHHHHHHHHHHhcCCccc
Confidence 366777777766654 4566666666666666666 21122334446666777776543
No 482
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.59 E-value=7.9e+02 Score=24.28 Aligned_cols=109 Identities=7% Similarity=0.014 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 152 (723)
...-|+..|-+.++|+.|.+.+......+ .+..+..--.+..+..+.+.|...++..+|.....+..= .-... .+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~t-g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi---l~a~~-~N 179 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDT-GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI---LQAES-SN 179 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCccc-chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---hhhcc-cC
Confidence 44567889999999999999987765443 233333333456667899999999999999888877542 11111 22
Q ss_pred chhhhhHHHHHHhh--ccchHHHHHHHHHHHHhcCC
Q 004922 153 SGFKLLKNECQRLL--DSGEVEMFVGLMEVLEEFRL 186 (723)
Q Consensus 153 ~~~~~l~~~~~~~~--~~g~~~~A~~~~~~~~~~~~ 186 (723)
.-+..-.++|.+-+ ..+++-+|-..|.++....+
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555554421 25666666666666655444
No 483
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.59 E-value=1.2e+03 Score=26.20 Aligned_cols=315 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHH
Q 004922 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL 342 (723)
Q Consensus 263 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 342 (723)
..-..+.|++..+.++...+....+.|=..-+...-.......++....+++-... +.....-...+..+.+.+++..
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTL--PPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCHHH
Q ss_pred HHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHH
Q 004922 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA--NAGLVEQAMHL 420 (723)
Q Consensus 343 A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~ 420 (723)
....+.. .+.+.........+....|+.++|....+.+-..|.. .....+.++..+. ..-..+...+=
T Consensus 118 ~~~~~~~---------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 118 LLAFSPE---------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred HHHhcCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HHHHHHcCCCCCHHHHHHHH---------HHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcccccc
Q 004922 421 FEEMLQAGCEPNSQCCNILL---------QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (723)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll---------~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (723)
++.+...|-..........+ .-..-..+...+..++..
T Consensus 188 ~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~--------------------------------- 234 (644)
T PRK11619 188 IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART--------------------------------- 234 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---------------------------------
Q ss_pred CCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh----cHHHHHHHHHHH-HHcCCCCCHH--HHHHHHHHHHcCCCH
Q 004922 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----DYYRVKALMNEM-RTVGLSPNHI--SWTILIDACGGSGNV 564 (723)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~a~~l~~~m-~~~~~~p~~~--~~~~li~~~~~~g~~ 564 (723)
+.|+...-...+.++.+ +.+.|..++... ...++.+... +...+....+..+..
T Consensus 235 -------------------~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~ 295 (644)
T PRK11619 235 -------------------TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVT 295 (644)
T ss_pred -------------------cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCC
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004922 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (723)
Q Consensus 565 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~ 644 (723)
.+|...++..... ..+.....--+..-.+.++++.+...+..|... .+-...-.--+.+++...|+.++|.. +|
T Consensus 296 ~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~---~~ 369 (644)
T PRK11619 296 DEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEE---IL 369 (644)
T ss_pred HHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHH---HH
Q ss_pred HHH
Q 004922 645 QDM 647 (723)
Q Consensus 645 ~~m 647 (723)
+..
T Consensus 370 ~~~ 372 (644)
T PRK11619 370 RQL 372 (644)
T ss_pred HHH
No 484
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=21.56 E-value=3.8e+02 Score=20.55 Aligned_cols=37 Identities=3% Similarity=-0.141 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004922 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (723)
.|+.+.|.++++.+. +| |+ .|..++.++...|.-+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 355555555555555 32 22 345555555555554433
No 485
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=21.48 E-value=8.2e+02 Score=24.41 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l 158 (723)
..+...+-++++..++++....+. |..|..--....+..... ....-+|.....+|+-+.. +.|++. +-
T Consensus 264 r~lW~r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~--~apSPv-------V~ 332 (415)
T COG4941 264 RSLWDRALIDEGLALLDRALASRR-PGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQ--AAPSPV-------VT 332 (415)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHH--hCCCCe-------Ee
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (723)
++-...+....-++.++...+.+...+--.....++..-+..+.+.|+..+|...|+.
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.36 E-value=7.9e+02 Score=24.15 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcC-------CCC--------------C---HHHHHHHHHHHH---cCCC
Q 004922 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVG-------LSP--------------N---HISWTILIDACG---GSGN 563 (723)
Q Consensus 511 ~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~-------~~p--------------~---~~~~~~li~~~~---~~g~ 563 (723)
+.-+......++..+.+|...|+.+++.+.... +.+ | ...|+ +|+++- +..+
T Consensus 63 ~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd-~iSAf~KSiRGSD 141 (300)
T PRK14700 63 FKIDDGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYE-QLSAFHKSVRGTD 141 (300)
T ss_pred CCcCHHHHHHHHHhcCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHH-HHHHHHHHhhcCC
Confidence 456777778888877788777777776644310 100 0 11222 344443 3457
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004922 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR-----LKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (723)
Q Consensus 564 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 638 (723)
.+.|.-++.+|++.|-.|....=..++.++-..|. ...|...++.....|+.--.......+--++.+-+-..+-
T Consensus 142 pDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y 221 (300)
T PRK14700 142 PDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACY 221 (300)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHH
Confidence 78888888888888777766666666666666664 3345555555556665444444444444445455444444
Q ss_pred HHHH
Q 004922 639 QCLA 642 (723)
Q Consensus 639 ~a~~ 642 (723)
.|+.
T Consensus 222 ~A~~ 225 (300)
T PRK14700 222 KALA 225 (300)
T ss_pred HHHH
Confidence 4443
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.32 E-value=4.3e+02 Score=21.06 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCC
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKA 654 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p 654 (723)
..++..|...|+.++|...++++... .--......++..+...++ ..-+....++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~-~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKK-SYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSH-HHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHhcCCCC
Confidence 34555666677777777777665321 1122333333443333322 22233445666666666543
No 488
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.28 E-value=9.9e+02 Score=25.27 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-------CCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 551 WTILIDACGGSGNVEGALQILKIMRE-------DGMSPD-----------VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
||.|...+.+.|.+..+..+|.+... .|++|. ..+||+=+ .|...|++-.|.+.|.+....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH
Confidence 46777777778888888877777663 466653 23455443 466789999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 004922 613 QIQPNLVTYITLLRARSR 630 (723)
Q Consensus 613 g~~p~~~~~~~ll~~~~~ 630 (723)
+.-++..|--+..+|..
T Consensus 365 -fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 -FHRNPRLWLRLAECCIM 381 (696)
T ss_pred -HhcCcHHHHHHHHHHHH
Confidence 56788999999888864
No 489
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.22 E-value=5e+02 Score=26.82 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH-----HhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 76 DMASKLAKDGRLEEFAMIVESVV-----VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
..+..+....++.+-+....... ..+.........+.--++..+++.++-.|++..|+.+++.+.
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 34445555555555544443311 111122223333334444578888999999999999987553
No 490
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.92 E-value=4.4e+02 Score=21.01 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCc
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~ 288 (723)
..++..|...++.++|...+.++... .-.......++..+...+ .-+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45666777788888888888775431 011223333444333332 234455666666666543
No 491
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=20.78 E-value=4.5e+02 Score=21.13 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=7.2
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004922 410 NAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~ 426 (723)
+.|-.+++...+.++..
T Consensus 81 klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 81 KLGLASALESRLTRLAS 97 (116)
T ss_dssp HCT-HHHHHHHHHHHCT
T ss_pred hhccHHHHHHHHHHHHh
Confidence 44444444444444433
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.57 E-value=1.9e+02 Score=23.27 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004922 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (723)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 412 (723)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.52 E-value=2.3e+02 Score=29.18 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=15.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
.++..++-+|.-.+++.+|.++|..+.
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666665544
No 494
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=20.46 E-value=9.8e+02 Score=26.87 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCC----HHHHHHHHHHHHH
Q 004922 543 GLSPNHISWTILIDACGGSGN----VEGALQILKIMRE 576 (723)
Q Consensus 543 ~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~ 576 (723)
|.+.|...|..|+.++....+ ++++.++++-++.
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~ 249 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKK 249 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHH
Confidence 566666667666666554321 3555555555543
Done!