Query 004922
Match_columns 723
No_of_seqs 592 out of 4059
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 09:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-34 5.2E-39 318.1 45.9 381 221-665 200-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-34 4.6E-39 318.6 41.3 483 67-628 80-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.1E-30 7.2E-35 271.9 23.3 214 381-668 8-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.8E-29 2E-33 261.0 26.0 189 363-631 26-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.2E-24 3.1E-28 218.5 45.0 294 77-460 5-298 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.9E-28 216.4 46.0 368 167-630 11-385 (388)
7 2gw1_A Mitochondrial precursor 99.9 8.3E-20 2.8E-24 196.5 37.9 444 71-621 6-485 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.7E-19 9.3E-24 188.9 36.8 335 59-441 15-371 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.2E-18 4.2E-23 183.9 41.4 312 218-625 23-370 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.8E-19 9.6E-24 193.6 36.1 425 114-612 26-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 8.2E-19 2.8E-23 188.7 36.4 429 164-652 15-480 (514)
12 3fp2_A TPR repeat-containing p 99.8 2.5E-17 8.6E-22 178.2 43.5 403 70-577 24-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.4E-16 8.2E-21 160.6 35.7 327 71-444 3-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.2E-15 1.1E-19 152.2 40.6 198 222-462 4-217 (359)
15 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-18 5.1E-23 186.2 13.1 120 547-668 126-248 (1134)
16 1xi4_A Clathrin heavy chain; a 99.8 1.2E-13 4.1E-18 153.4 49.8 389 115-607 987-1440(1630)
17 2ooe_A Cleavage stimulation fa 99.8 2.2E-14 7.7E-19 154.2 43.0 334 61-461 4-384 (530)
18 3hym_B Cell division cycle pro 99.7 7.9E-15 2.7E-19 147.4 34.9 302 217-635 18-322 (330)
19 3hym_B Cell division cycle pro 99.7 3.1E-15 1E-19 150.4 31.0 281 164-450 31-322 (330)
20 2xm6_A Protein corresponding t 99.7 3E-13 1E-17 143.8 47.6 346 190-613 38-433 (490)
21 2ooe_A Cleavage stimulation fa 99.7 1.1E-13 3.9E-18 148.7 43.9 403 188-649 10-491 (530)
22 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.8E-20 155.6 26.9 259 192-459 65-356 (368)
23 1xi4_A Clathrin heavy chain; a 99.7 2.1E-12 7.3E-17 143.6 50.8 339 72-454 986-1376(1630)
24 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.3E-22 177.3 11.0 125 321-446 124-249 (1134)
25 2xm6_A Protein corresponding t 99.7 1.2E-12 4.1E-17 139.1 47.4 352 218-653 36-435 (490)
26 1fch_A Peroxisomal targeting s 99.7 1.2E-15 4.2E-20 156.0 22.9 288 123-423 35-355 (368)
27 4eqf_A PEX5-related protein; a 99.7 5.3E-15 1.8E-19 151.1 27.4 197 221-459 65-273 (365)
28 1b89_A Protein (clathrin heavy 99.7 2.6E-15 9E-20 149.6 20.8 219 168-460 16-234 (449)
29 4eqf_A PEX5-related protein; a 99.7 1E-14 3.5E-19 148.9 24.8 256 194-458 68-352 (365)
30 4g1t_A Interferon-induced prot 99.7 5.9E-14 2E-18 148.9 30.1 370 70-464 50-461 (472)
31 3cv0_A Peroxisome targeting si 99.7 3.6E-14 1.2E-18 142.4 26.8 259 162-461 28-314 (327)
32 3cv0_A Peroxisome targeting si 99.7 7.5E-14 2.6E-18 140.0 28.8 264 222-609 22-312 (327)
33 3mkr_A Coatomer subunit epsilo 99.6 5.9E-14 2E-18 137.3 24.5 252 81-392 9-264 (291)
34 4g1t_A Interferon-induced prot 99.6 3.2E-13 1.1E-17 143.2 31.9 194 153-352 52-275 (472)
35 3mkr_A Coatomer subunit epsilo 99.6 1.6E-13 5.5E-18 134.2 26.2 268 168-456 12-288 (291)
36 1b89_A Protein (clathrin heavy 99.6 4.9E-15 1.7E-19 147.6 13.7 327 205-666 17-353 (449)
37 2pl2_A Hypothetical conserved 99.5 1.7E-12 5.7E-17 121.1 22.8 201 217-460 1-212 (217)
38 2h6f_A Protein farnesyltransfe 99.5 5.9E-13 2E-17 134.6 19.6 201 62-282 89-302 (382)
39 3uq3_A Heat shock protein STI1 99.5 1.2E-11 4.1E-16 118.9 25.1 224 222-463 6-237 (258)
40 2pl2_A Hypothetical conserved 99.5 4.1E-12 1.4E-16 118.4 20.1 197 188-426 2-213 (217)
41 3uq3_A Heat shock protein STI1 99.5 1.5E-11 5.1E-16 118.3 24.3 193 221-427 38-236 (258)
42 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.5E-12 1.2E-16 124.2 18.9 117 168-285 18-140 (275)
43 3u4t_A TPR repeat-containing p 99.4 3E-11 1E-15 117.3 24.9 223 163-393 11-251 (272)
44 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-11 4E-16 118.7 21.0 204 65-285 31-238 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.2E-12 1.8E-16 122.9 18.3 155 123-285 15-173 (275)
46 3e4b_A ALGK; tetratricopeptide 99.4 4.4E-10 1.5E-14 117.4 33.4 373 166-649 14-420 (452)
47 3e4b_A ALGK; tetratricopeptide 99.4 2.2E-10 7.6E-15 119.7 30.9 347 75-463 7-388 (452)
48 2ho1_A Type 4 fimbrial biogene 99.4 1.3E-10 4.5E-15 111.3 27.0 208 324-621 37-245 (252)
49 2vq2_A PILW, putative fimbrial 99.4 1.4E-10 4.7E-15 108.8 26.4 202 323-611 7-210 (225)
50 1ouv_A Conserved hypothetical 99.4 4.2E-10 1.4E-14 109.2 30.6 225 220-464 5-253 (273)
51 2vq2_A PILW, putative fimbrial 99.4 1.2E-10 4.1E-15 109.2 25.7 201 221-460 8-209 (225)
52 1ouv_A Conserved hypothetical 99.4 1.8E-10 6.2E-15 111.8 27.6 217 193-428 8-252 (273)
53 3sf4_A G-protein-signaling mod 99.4 1.8E-11 6.3E-16 126.6 21.0 319 70-450 8-364 (406)
54 2h6f_A Protein farnesyltransfe 99.4 5.4E-11 1.9E-15 120.2 23.3 213 219-443 129-363 (382)
55 4e6h_A MRNA 3'-END-processing 99.4 8.1E-09 2.8E-13 111.5 40.7 460 58-628 54-584 (679)
56 2q7f_A YRRB protein; TPR, prot 99.4 1E-10 3.5E-15 111.3 23.0 199 221-461 23-221 (243)
57 3u4t_A TPR repeat-containing p 99.4 8.2E-11 2.8E-15 114.2 22.4 233 223-463 5-251 (272)
58 3ro2_A PINS homolog, G-protein 99.3 5E-11 1.7E-15 119.6 20.6 296 71-427 5-332 (338)
59 4a1s_A PINS, partner of inscut 99.3 1.7E-11 5.9E-16 127.2 17.7 295 71-427 48-372 (411)
60 2q7f_A YRRB protein; TPR, prot 99.3 5.3E-11 1.8E-15 113.3 19.7 169 218-427 54-222 (243)
61 4a1s_A PINS, partner of inscut 99.3 2.9E-11 1E-15 125.4 18.5 274 161-462 54-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.3 1.3E-07 4.6E-12 102.0 46.0 443 173-666 50-584 (679)
63 3sf4_A G-protein-signaling mod 99.3 9.5E-11 3.2E-15 121.2 20.7 273 162-462 16-336 (406)
64 4abn_A Tetratricopeptide repea 99.3 6.1E-11 2.1E-15 124.8 19.1 216 168-424 81-318 (474)
65 3ulq_A Response regulator aspa 99.3 1.9E-10 6.4E-15 118.0 21.5 93 165-284 113-212 (383)
66 3ulq_A Response regulator aspa 99.3 4.3E-10 1.5E-14 115.3 24.2 302 231-611 22-367 (383)
67 3ro2_A PINS homolog, G-protein 99.3 1.1E-10 3.7E-15 117.1 19.2 270 165-462 15-332 (338)
68 3vtx_A MAMA; tetratricopeptide 99.3 8.5E-10 2.9E-14 99.7 22.4 168 219-427 3-170 (184)
69 2ond_A Cleavage stimulation fa 99.3 1.6E-09 5.5E-14 107.1 25.4 222 172-426 33-269 (308)
70 2ond_A Cleavage stimulation fa 99.2 9.9E-09 3.4E-13 101.4 29.1 214 341-611 33-269 (308)
71 3nf1_A KLC 1, kinesin light ch 99.2 3.6E-10 1.2E-14 112.0 18.4 241 221-462 27-307 (311)
72 3nf1_A KLC 1, kinesin light ch 99.2 4.9E-10 1.7E-14 111.0 18.7 238 70-317 26-306 (311)
73 4abn_A Tetratricopeptide repea 99.2 6.6E-10 2.3E-14 116.8 20.1 202 218-461 99-320 (474)
74 3vtx_A MAMA; tetratricopeptide 99.2 5E-09 1.7E-13 94.6 23.4 168 255-463 4-171 (184)
75 1hz4_A MALT regulatory protein 99.2 3.2E-09 1.1E-13 108.3 24.6 292 71-391 14-321 (373)
76 3q15_A PSP28, response regulat 99.2 1.7E-09 5.9E-14 110.5 21.8 238 166-461 112-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.1 3.3E-10 1.1E-14 123.9 14.8 169 66-284 5-173 (723)
78 3q15_A PSP28, response regulat 99.1 6.4E-09 2.2E-13 106.2 23.6 238 223-461 12-289 (378)
79 1hz4_A MALT regulatory protein 99.1 6.5E-08 2.2E-12 98.5 28.2 208 224-460 17-242 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.1 4E-09 1.4E-13 115.4 19.9 167 218-425 6-172 (723)
81 3as5_A MAMA; tetratricopeptide 99.1 1.7E-08 5.7E-13 91.0 20.7 161 224-425 11-171 (186)
82 3as5_A MAMA; tetratricopeptide 99.0 3.2E-08 1.1E-12 89.1 21.3 167 256-463 8-174 (186)
83 3edt_B KLC 2, kinesin light ch 99.0 1E-08 3.5E-13 99.7 17.8 222 239-461 26-280 (283)
84 4i17_A Hypothetical protein; T 98.9 1.3E-07 4.3E-12 88.7 22.3 191 221-427 7-209 (228)
85 3edt_B KLC 2, kinesin light ch 98.9 1.9E-08 6.6E-13 97.7 17.1 153 310-462 29-198 (283)
86 4i17_A Hypothetical protein; T 98.9 2.5E-07 8.7E-12 86.6 23.0 100 361-461 5-104 (228)
87 1qqe_A Vesicular transport pro 98.9 2.6E-08 8.8E-13 97.4 16.4 214 70-316 36-267 (292)
88 3qky_A Outer membrane assembly 98.9 3.1E-08 1.1E-12 95.1 16.0 194 66-285 11-224 (261)
89 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.4E-12 87.7 19.0 194 71-286 4-214 (225)
90 2r5s_A Uncharacterized protein 98.8 3.8E-08 1.3E-12 87.9 11.6 166 71-284 6-172 (176)
91 2fo7_A Synthetic consensus TPR 98.8 5E-07 1.7E-11 76.1 18.1 130 326-462 3-132 (136)
92 1qqe_A Vesicular transport pro 98.8 2.3E-07 7.9E-12 90.6 18.1 204 227-461 43-268 (292)
93 3urz_A Uncharacterized protein 98.8 1.8E-07 6.3E-12 86.0 16.4 36 71-108 4-39 (208)
94 2pzi_A Probable serine/threoni 98.8 2.8E-08 9.5E-13 109.4 12.1 168 82-270 402-582 (681)
95 3urz_A Uncharacterized protein 98.8 1.4E-07 4.7E-12 86.9 14.6 110 159-285 8-117 (208)
96 2fo7_A Synthetic consensus TPR 98.7 6.2E-07 2.1E-11 75.5 17.7 129 223-391 3-131 (136)
97 3mv2_B Coatomer subunit epsilo 98.7 2.5E-06 8.5E-11 81.5 23.1 168 222-427 101-282 (310)
98 3qou_A Protein YBBN; thioredox 98.7 7.3E-08 2.5E-12 93.8 12.7 169 67-284 114-283 (287)
99 3mv2_B Coatomer subunit epsilo 98.7 4.9E-06 1.7E-10 79.4 23.9 207 232-461 24-239 (310)
100 4f3v_A ESX-1 secretion system 98.7 3.5E-07 1.2E-11 86.2 15.8 207 83-298 18-248 (282)
101 3qky_A Outer membrane assembly 98.7 1E-06 3.5E-11 84.4 19.7 97 188-284 12-125 (261)
102 3dra_A Protein farnesyltransfe 98.7 4.8E-06 1.6E-10 80.5 24.1 113 170-285 48-175 (306)
103 2uy1_A Cleavage stimulation fa 98.7 7.4E-05 2.5E-09 78.2 34.7 120 517-648 288-411 (493)
104 2pzi_A Probable serine/threoni 98.7 2.5E-07 8.7E-12 101.8 16.1 172 232-413 402-583 (681)
105 2r5s_A Uncharacterized protein 98.6 2.8E-07 9.5E-12 82.2 13.0 63 222-285 7-69 (176)
106 4ga2_A E3 SUMO-protein ligase 98.6 4.6E-08 1.6E-12 84.6 7.3 101 168-271 44-149 (150)
107 2ifu_A Gamma-SNAP; membrane fu 98.6 8.8E-07 3E-11 87.1 16.6 160 84-283 4-182 (307)
108 4ga2_A E3 SUMO-protein ligase 98.6 1.6E-07 5.4E-12 81.2 9.7 127 167-297 9-140 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.6 4.8E-06 1.6E-10 77.6 20.1 182 223-428 6-214 (225)
110 2ifu_A Gamma-SNAP; membrane fu 98.6 6.1E-07 2.1E-11 88.3 14.3 186 67-283 32-222 (307)
111 3qou_A Protein YBBN; thioredox 98.6 1.1E-06 3.8E-11 85.4 15.8 162 218-389 114-281 (287)
112 3dra_A Protein farnesyltransfe 98.5 3.4E-05 1.2E-09 74.5 25.1 220 233-461 45-286 (306)
113 2vsy_A XCC0866; transferase, g 98.5 3.9E-06 1.3E-10 90.7 18.5 150 205-394 3-159 (568)
114 3rjv_A Putative SEL1 repeat pr 98.5 1.6E-05 5.3E-10 73.2 20.1 172 240-428 5-198 (212)
115 2vsy_A XCC0866; transferase, g 98.5 4.2E-06 1.4E-10 90.4 18.6 152 269-428 2-158 (568)
116 2qfc_A PLCR protein; TPR, HTH, 98.5 9E-06 3.1E-10 79.3 19.0 180 71-283 75-264 (293)
117 3rjv_A Putative SEL1 repeat pr 98.5 8.3E-06 2.8E-10 75.0 17.7 161 221-394 18-199 (212)
118 2uy1_A Cleavage stimulation fa 98.4 0.002 7E-08 67.3 37.6 352 235-683 28-412 (493)
119 4gco_A Protein STI-1; structur 98.4 1.6E-06 5.4E-11 72.1 10.5 116 64-198 7-122 (126)
120 3gyz_A Chaperone protein IPGC; 98.4 3.8E-06 1.3E-10 72.0 12.4 90 158-249 39-132 (151)
121 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.9E-11 84.9 10.2 193 71-285 4-199 (281)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.9E-05 6.3E-10 72.7 17.9 133 224-394 9-152 (213)
123 3u3w_A Transcriptional activat 98.3 0.00032 1.1E-08 68.1 26.9 129 329-460 80-223 (293)
124 3gyz_A Chaperone protein IPGC; 98.3 5.5E-06 1.9E-10 71.0 12.0 96 326-427 38-133 (151)
125 1a17_A Serine/threonine protei 98.3 3E-05 1E-09 67.9 17.3 131 324-461 13-145 (166)
126 1na0_A Designed protein CTPR3; 98.3 3.2E-05 1.1E-09 63.6 16.3 115 324-445 9-123 (125)
127 4gco_A Protein STI-1; structur 98.3 2.6E-05 8.9E-10 64.6 15.5 109 324-439 13-121 (126)
128 2vyi_A SGTA protein; chaperone 98.3 2.5E-05 8.4E-10 65.0 15.2 120 323-449 11-130 (131)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.5E-05 8.6E-10 71.8 16.4 129 326-463 8-151 (213)
130 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00044 1.5E-08 67.1 26.0 133 325-460 76-223 (293)
131 3u3w_A Transcriptional activat 98.3 2.5E-05 8.6E-10 76.0 16.7 182 73-285 77-266 (293)
132 4f3v_A ESX-1 secretion system 98.2 9.4E-06 3.2E-10 76.4 12.7 186 168-393 19-238 (282)
133 2c2l_A CHIP, carboxy terminus 98.2 1.2E-05 4.1E-10 77.7 13.7 99 362-462 3-101 (281)
134 2lni_A Stress-induced-phosphop 98.2 3.1E-05 1.1E-09 64.7 14.7 120 321-447 13-132 (133)
135 2vgx_A Chaperone SYCD; alterna 98.2 9.8E-06 3.3E-10 69.5 11.5 110 59-185 10-119 (148)
136 3q7a_A Farnesyltransferase alp 98.2 0.00016 5.6E-09 70.5 20.9 225 169-427 68-331 (349)
137 3gw4_A Uncharacterized protein 98.2 3.6E-05 1.2E-09 70.0 15.8 165 232-426 3-175 (203)
138 1a17_A Serine/threonine protei 98.2 6.5E-05 2.2E-09 65.6 16.9 130 256-425 13-144 (166)
139 2xcb_A PCRH, regulatory protei 98.2 9.9E-06 3.4E-10 69.0 10.8 110 59-185 7-116 (142)
140 2e2e_A Formate-dependent nitri 98.2 9.8E-06 3.4E-10 72.1 11.2 116 168-286 23-145 (177)
141 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.2E-09 76.6 15.7 131 323-461 146-293 (336)
142 3q7a_A Farnesyltransferase alp 98.2 0.00048 1.6E-08 67.2 22.9 227 227-462 60-331 (349)
143 1na0_A Designed protein CTPR3; 98.1 0.00011 3.8E-09 60.2 16.1 114 256-409 9-122 (125)
144 2vgx_A Chaperone SYCD; alterna 98.1 1.6E-05 5.6E-10 68.0 10.9 98 324-427 21-118 (148)
145 2e2e_A Formate-dependent nitri 98.1 3.1E-05 1E-09 68.8 12.9 119 303-428 24-145 (177)
146 3gw4_A Uncharacterized protein 98.1 4.8E-05 1.7E-09 69.2 14.4 159 303-462 6-176 (203)
147 1p5q_A FKBP52, FK506-binding p 98.1 4.2E-05 1.5E-09 76.0 14.8 130 221-389 147-291 (336)
148 3dss_A Geranylgeranyl transfer 98.1 0.00051 1.7E-08 66.7 21.5 115 168-285 42-174 (331)
149 3upv_A Heat shock protein STI1 98.1 0.00012 4.1E-09 60.5 15.1 98 324-427 4-101 (126)
150 2lni_A Stress-induced-phosphop 98.1 8.6E-05 2.9E-09 61.9 14.3 97 221-352 16-112 (133)
151 2vyi_A SGTA protein; chaperone 98.0 0.00012 4E-09 60.7 14.5 119 255-413 11-129 (131)
152 4gcn_A Protein STI-1; structur 98.0 0.00011 3.7E-09 60.9 14.0 108 324-438 8-121 (127)
153 3ro3_A PINS homolog, G-protein 98.0 2.1E-05 7.3E-10 68.4 10.2 150 70-249 8-157 (164)
154 1elw_A TPR1-domain of HOP; HOP 98.0 0.00023 7.8E-09 57.6 15.6 108 324-438 4-111 (118)
155 2fbn_A 70 kDa peptidylprolyl i 98.0 3.1E-05 1.1E-09 70.3 11.0 123 222-383 39-176 (198)
156 2kck_A TPR repeat; tetratricop 98.0 6.3E-05 2.2E-09 60.4 11.6 97 189-286 4-107 (112)
157 4b4t_Q 26S proteasome regulato 97.9 0.0005 1.7E-08 71.1 20.3 217 159-390 8-243 (434)
158 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00025 8.4E-09 61.9 15.3 100 322-427 9-108 (164)
159 1elr_A TPR2A-domain of HOP; HO 97.9 0.00013 4.5E-09 60.4 12.8 112 324-442 4-121 (131)
160 3upv_A Heat shock protein STI1 97.9 0.00018 6.3E-09 59.4 13.5 99 363-463 4-102 (126)
161 2xcb_A PCRH, regulatory protei 97.9 0.00013 4.3E-09 61.9 12.7 95 326-426 20-114 (142)
162 2dba_A Smooth muscle cell asso 97.9 0.00028 9.6E-09 60.0 15.1 110 322-439 26-139 (148)
163 4gcn_A Protein STI-1; structur 97.9 0.00018 6.1E-09 59.6 13.2 112 222-367 9-120 (127)
164 3q49_B STIP1 homology and U bo 97.9 0.00027 9.4E-09 59.2 14.4 97 323-425 8-104 (137)
165 3n71_A Histone lysine methyltr 97.9 6.2E-05 2.1E-09 78.0 12.0 144 79-249 317-463 (490)
166 4b4t_Q 26S proteasome regulato 97.9 0.0016 5.5E-08 67.2 22.3 200 227-426 10-244 (434)
167 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00026 9E-09 64.0 14.2 135 324-460 38-184 (198)
168 3q49_B STIP1 homology and U bo 97.9 0.00036 1.2E-08 58.4 14.2 102 360-463 6-107 (137)
169 2kck_A TPR repeat; tetratricop 97.8 0.0002 7E-09 57.3 11.9 93 366-460 9-104 (112)
170 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00027 9.4E-09 61.6 13.4 102 360-463 8-109 (164)
171 1elw_A TPR1-domain of HOP; HOP 97.8 0.00088 3E-08 54.0 15.7 99 362-462 3-101 (118)
172 1elr_A TPR2A-domain of HOP; HO 97.8 0.00015 5E-09 60.2 10.5 111 222-370 5-119 (131)
173 3dss_A Geranylgeranyl transfer 97.8 0.032 1.1E-06 54.0 28.4 116 340-462 90-222 (331)
174 1hxi_A PEX5, peroxisome target 97.7 0.00031 1.1E-08 57.5 11.6 94 327-426 20-113 (121)
175 2dba_A Smooth muscle cell asso 97.7 0.0012 4E-08 56.0 15.9 30 323-352 98-127 (148)
176 3ro3_A PINS homolog, G-protein 97.7 0.0003 1E-08 60.8 12.3 139 324-462 9-158 (164)
177 2xev_A YBGF; tetratricopeptide 97.7 0.00073 2.5E-08 55.8 13.9 94 327-427 5-105 (129)
178 1hxi_A PEX5, peroxisome target 97.7 0.00037 1.3E-08 57.0 11.8 96 365-462 19-114 (121)
179 3n71_A Histone lysine methyltr 97.7 0.00038 1.3E-08 72.2 14.0 137 229-391 317-463 (490)
180 2hr2_A Hypothetical protein; a 97.6 0.00072 2.4E-08 57.2 12.3 101 326-426 13-130 (159)
181 2xev_A YBGF; tetratricopeptide 97.6 0.00071 2.4E-08 55.9 12.1 90 166-285 13-105 (129)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00058 2E-08 70.9 14.0 130 323-460 267-413 (457)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00014 4.8E-09 75.7 9.1 126 64-202 262-396 (457)
184 1wao_1 Serine/threonine protei 97.6 6.6E-05 2.3E-09 78.4 6.6 111 167-280 18-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 97.6 0.0012 4E-08 66.3 15.3 128 325-454 224-362 (370)
186 3k9i_A BH0479 protein; putativ 97.6 0.00033 1.1E-08 56.9 9.3 89 336-427 2-90 (117)
187 1wao_1 Serine/threonine protei 97.5 0.00031 1.1E-08 73.3 10.6 122 330-458 12-135 (477)
188 3rkv_A Putative peptidylprolyl 97.5 0.0019 6.3E-08 56.0 14.0 103 324-427 11-126 (162)
189 3k9i_A BH0479 protein; putativ 97.5 0.00022 7.4E-09 58.0 7.3 88 375-463 2-91 (117)
190 1ihg_A Cyclophilin 40; ppiase 97.5 0.00052 1.8E-08 68.9 11.2 127 71-209 223-359 (370)
191 1dce_A Protein (RAB geranylger 97.4 0.0031 1.1E-07 67.0 16.6 172 84-274 42-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00038 1.3E-08 69.0 8.8 141 116-285 182-328 (338)
193 3rkv_A Putative peptidylprolyl 97.4 0.0034 1.2E-07 54.3 13.6 99 363-462 11-126 (162)
194 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00054 1.8E-08 68.0 9.0 128 327-462 182-328 (338)
195 2hr2_A Hypothetical protein; a 97.3 0.0034 1.2E-07 53.1 12.3 101 363-463 11-132 (159)
196 1dce_A Protein (RAB geranylger 97.2 0.0059 2E-07 64.9 16.2 143 169-336 43-190 (567)
197 3qww_A SET and MYND domain-con 97.2 0.00059 2E-08 69.5 7.3 99 82-183 309-410 (433)
198 1zu2_A Mitochondrial import re 97.2 0.00037 1.2E-08 58.9 4.8 108 168-300 15-133 (158)
199 1klx_A Cysteine rich protein B 97.1 0.0076 2.6E-07 50.4 12.9 110 168-286 8-127 (138)
200 2l6j_A TPR repeat-containing p 97.1 0.00078 2.7E-08 53.8 6.1 89 362-453 3-98 (111)
201 2kat_A Uncharacterized protein 97.1 0.0014 4.8E-08 52.8 7.5 63 221-284 19-81 (115)
202 3qwp_A SET and MYND domain-con 97.0 0.00099 3.4E-08 68.0 7.5 105 76-183 292-399 (429)
203 1na3_A Designed protein CTPR2; 97.0 0.0093 3.2E-07 45.1 11.4 78 364-443 10-87 (91)
204 2kat_A Uncharacterized protein 97.0 0.0049 1.7E-07 49.5 9.8 78 308-391 4-81 (115)
205 1klx_A Cysteine rich protein B 96.9 0.025 8.7E-07 47.1 14.3 110 304-428 10-127 (138)
206 1na3_A Designed protein CTPR2; 96.9 0.0096 3.3E-07 45.0 10.8 83 323-411 8-90 (91)
207 3ma5_A Tetratricopeptide repea 96.9 0.0027 9.1E-08 49.6 7.3 68 65-141 2-69 (100)
208 3ma5_A Tetratricopeptide repea 96.9 0.0038 1.3E-07 48.7 8.1 67 218-285 4-70 (100)
209 2l6j_A TPR repeat-containing p 96.8 0.0041 1.4E-07 49.4 8.3 92 323-419 3-99 (111)
210 1zu2_A Mitochondrial import re 96.8 0.0046 1.6E-07 52.2 8.6 100 335-442 13-133 (158)
211 3ly7_A Transcriptional activat 96.4 0.032 1.1E-06 54.3 12.5 129 153-285 195-339 (372)
212 3qww_A SET and MYND domain-con 96.3 0.035 1.2E-06 56.4 13.0 96 233-354 310-412 (433)
213 3qwp_A SET and MYND domain-con 96.3 0.053 1.8E-06 55.2 14.4 103 227-355 293-402 (429)
214 3ly7_A Transcriptional activat 96.2 0.14 4.9E-06 49.8 15.7 163 206-402 179-347 (372)
215 3bee_A Putative YFRE protein; 95.9 0.031 1.1E-06 42.5 8.0 68 66-142 2-72 (93)
216 3mkq_B Coatomer subunit alpha; 95.6 0.31 1.1E-05 41.6 13.3 98 168-282 18-115 (177)
217 3u64_A Protein TP_0956; tetrat 95.5 0.16 5.6E-06 47.3 12.4 27 88-116 49-75 (301)
218 2kc7_A BFR218_protein; tetratr 95.4 0.074 2.5E-06 40.8 8.6 55 372-427 9-64 (99)
219 1pc2_A Mitochondria fission pr 95.2 0.21 7E-06 41.6 10.8 86 529-618 14-104 (152)
220 3u64_A Protein TP_0956; tetrat 95.1 1.6 5.4E-05 40.7 17.5 94 529-626 179-285 (301)
221 3mkq_A Coatomer beta'-subunit; 95.1 0.51 1.7E-05 52.9 17.5 152 232-424 610-762 (814)
222 3mkq_A Coatomer beta'-subunit; 95.0 0.52 1.8E-05 52.8 17.6 156 78-283 606-763 (814)
223 2kc7_A BFR218_protein; tetratr 95.0 0.15 5.1E-06 39.0 9.3 60 330-394 6-66 (99)
224 3bee_A Putative YFRE protein; 94.8 0.35 1.2E-05 36.6 10.4 68 218-286 3-73 (93)
225 2v5f_A Prolyl 4-hydroxylase su 94.2 0.25 8.6E-06 38.4 8.7 70 547-618 4-79 (104)
226 3mkq_B Coatomer subunit alpha; 93.6 1.5 5.1E-05 37.5 12.8 98 301-423 17-114 (177)
227 2v5f_A Prolyl 4-hydroxylase su 93.6 0.95 3.2E-05 35.0 11.1 70 323-392 4-75 (104)
228 4h7y_A Dual specificity protei 93.2 0.73 2.5E-05 37.8 9.6 95 123-253 23-126 (161)
229 1pc2_A Mitochondria fission pr 92.5 1.7 5.8E-05 36.1 11.3 20 372-391 80-99 (152)
230 4b4t_P 26S proteasome regulato 92.4 4 0.00014 41.5 16.5 164 225-392 141-324 (445)
231 1nzn_A CGI-135 protein, fissio 92.1 2 6.8E-05 34.3 10.7 86 529-618 17-107 (126)
232 1wy6_A Hypothetical protein ST 91.9 2.3 8E-05 34.1 10.5 83 205-288 75-157 (172)
233 3lvg_A Clathrin heavy chain 1; 91.0 2.3E-05 7.7E-10 77.4 -22.6 234 184-453 47-282 (624)
234 2ff4_A Probable regulatory pro 90.8 2.9 0.0001 41.6 13.3 119 151-284 111-233 (388)
235 2ff4_A Probable regulatory pro 90.6 3.7 0.00013 40.9 13.8 73 366-439 174-251 (388)
236 1v54_E Cytochrome C oxidase po 88.6 5.1 0.00017 30.2 9.3 63 563-626 25-87 (109)
237 3ffl_A Anaphase-promoting comp 88.1 2.9 0.0001 35.1 8.9 76 67-142 16-92 (167)
238 4ady_A RPN2, 26S proteasome re 87.4 40 0.0014 37.5 34.6 274 301-631 386-674 (963)
239 1nzn_A CGI-135 protein, fissio 87.0 4.2 0.00014 32.4 8.9 67 361-427 33-103 (126)
240 1y8m_A FIS1; mitochondria, unk 86.9 9.4 0.00032 31.1 10.9 70 615-684 36-106 (144)
241 1v54_E Cytochrome C oxidase po 86.8 6.2 0.00021 29.7 8.9 49 413-461 25-73 (109)
242 4gns_B Protein CSD3, chitin bi 86.7 4.7 0.00016 43.7 12.0 139 72-219 249-399 (754)
243 4h7y_A Dual specificity protei 86.1 13 0.00045 30.6 12.2 53 527-580 74-126 (161)
244 3lvg_A Clathrin heavy chain 1; 85.7 0.028 9.4E-07 56.0 -5.2 208 71-314 54-287 (624)
245 4fhn_B Nucleoporin NUP120; pro 85.3 11 0.00038 43.7 15.3 217 222-460 813-1048(1139)
246 1qsa_A Protein (soluble lytic 85.3 41 0.0014 35.6 26.7 251 195-461 76-347 (618)
247 2y69_E Cytochrome C oxidase su 84.8 8.7 0.0003 30.7 9.3 64 563-627 68-131 (152)
248 4gns_B Protein CSD3, chitin bi 84.5 7.7 0.00026 42.0 12.4 119 579-708 609-741 (754)
249 4fhn_B Nucleoporin NUP120; pro 83.9 45 0.0016 38.6 19.5 54 401-459 815-868 (1139)
250 2p58_C Putative type III secre 82.4 13 0.00043 27.9 8.8 84 235-327 21-106 (116)
251 2y69_E Cytochrome C oxidase su 81.7 11 0.00039 30.1 8.9 50 413-462 68-117 (152)
252 3o48_A Mitochondria fission 1 81.4 15 0.00052 29.4 9.8 71 614-684 36-107 (134)
253 2wpv_A GET4, UPF0363 protein Y 81.1 38 0.0013 32.1 14.5 26 190-215 133-158 (312)
254 1wy6_A Hypothetical protein ST 81.0 20 0.00069 28.8 16.8 138 233-394 19-156 (172)
255 3o48_A Mitochondria fission 1 80.5 16 0.00054 29.3 9.6 75 543-619 35-112 (134)
256 2uwj_G Type III export protein 80.2 12 0.00042 28.0 8.0 84 235-327 20-105 (115)
257 4b4t_R RPN7, 26S proteasome re 79.7 14 0.00049 37.2 11.9 96 222-317 132-236 (429)
258 3ffl_A Anaphase-promoting comp 78.2 14 0.00047 31.0 9.0 125 117-249 24-150 (167)
259 1zbp_A Hypothetical protein VP 73.8 5.6 0.00019 36.5 6.0 60 79-148 5-64 (273)
260 3eiq_C Programmed cell death p 72.6 16 0.00054 35.5 9.3 75 365-440 219-295 (358)
261 2p58_C Putative type III secre 71.0 24 0.00083 26.4 7.6 84 529-621 23-106 (116)
262 4b4t_P 26S proteasome regulato 69.7 97 0.0033 31.2 19.2 154 303-456 151-318 (445)
263 2uwj_G Type III export protein 66.6 24 0.0008 26.5 6.7 84 529-621 22-105 (115)
264 1y8m_A FIS1; mitochondria, unk 65.6 53 0.0018 26.7 14.2 73 545-619 36-111 (144)
265 3eiq_C Programmed cell death p 63.7 1.1E+02 0.0038 29.6 14.4 77 585-663 219-295 (358)
266 3esl_A Checkpoint serine/threo 61.8 63 0.0022 28.1 9.8 57 376-432 92-149 (202)
267 4b4t_R RPN7, 26S proteasome re 58.9 90 0.0031 31.3 12.3 101 325-427 132-237 (429)
268 2zu6_B Programmed cell death p 58.2 38 0.0013 32.0 8.7 68 366-434 169-238 (307)
269 3esl_A Checkpoint serine/threo 58.1 93 0.0032 27.1 10.2 57 337-396 92-148 (202)
270 3txn_A 26S proteasome regulato 57.1 1.5E+02 0.0052 29.1 21.7 250 326-620 21-291 (394)
271 3lpz_A GET4 (YOR164C homolog); 57.0 1.4E+02 0.0047 28.6 20.3 183 79-284 20-215 (336)
272 2nsz_A Programmed cell death p 49.8 92 0.0031 24.8 8.5 72 224-296 10-83 (129)
273 2nsz_A Programmed cell death p 48.9 1E+02 0.0034 24.6 9.8 68 586-655 10-77 (129)
274 4g8k_A 2-5A-dependent ribonucl 46.2 18 0.00063 34.8 4.7 105 534-656 220-329 (337)
275 1qsa_A Protein (soluble lytic 46.0 2.9E+02 0.01 29.1 29.4 115 528-648 229-346 (618)
276 4ady_A RPN2, 26S proteasome re 45.4 3.6E+02 0.012 30.1 34.4 189 266-461 384-588 (963)
277 2ion_A PDCD4, programmed cell 44.1 1.3E+02 0.0046 24.7 9.8 23 587-609 13-35 (152)
278 2keb_A DNA polymerase subunit 43.9 98 0.0033 23.1 7.0 64 602-667 28-93 (101)
279 1wdy_A 2-5A-dependent ribonucl 43.6 25 0.00085 32.5 5.1 21 596-616 192-212 (285)
280 2ion_A PDCD4, programmed cell 43.3 74 0.0025 26.3 7.1 73 223-296 11-85 (152)
281 4a1g_A Mitotic checkpoint seri 43.1 1.4E+02 0.0048 24.6 9.5 71 359-432 64-135 (152)
282 4a1g_A Mitotic checkpoint seri 42.0 1.4E+02 0.005 24.5 9.5 53 566-618 83-136 (152)
283 1zbp_A Hypothetical protein VP 39.9 2.2E+02 0.0076 26.1 14.6 115 229-352 5-128 (273)
284 4b4t_S RPN3, 26S proteasome re 38.7 2.6E+02 0.009 28.5 11.6 62 550-611 233-298 (523)
285 3lpz_A GET4 (YOR164C homolog); 38.4 2.7E+02 0.0092 26.6 23.4 25 547-571 135-159 (336)
286 4b4t_S RPN3, 26S proteasome re 38.0 2E+02 0.0069 29.4 10.6 77 63-142 223-299 (523)
287 2wvi_A Mitotic checkpoint seri 37.4 1.8E+02 0.0062 24.3 9.2 56 566-621 78-134 (164)
288 2wvi_A Mitotic checkpoint seri 34.9 2E+02 0.0068 24.0 9.4 54 381-434 78-132 (164)
289 4aez_C MAD3, mitotic spindle c 33.4 49 0.0017 29.3 4.7 88 132-254 96-183 (223)
290 2fu4_A Ferric uptake regulatio 31.9 1.4E+02 0.0046 21.2 6.5 57 608-668 7-64 (83)
291 4g8k_A 2-5A-dependent ribonucl 30.0 3.5E+02 0.012 25.4 12.8 109 309-433 219-329 (337)
292 2keb_A DNA polymerase subunit 30.0 1.7E+02 0.0059 21.8 8.2 59 565-625 26-89 (101)
293 1k1a_A B-cell lymphoma 3-encod 27.4 1.5E+02 0.0053 26.0 7.5 82 372-458 15-101 (241)
294 1wgl_A TOLL-interacting protei 27.1 1.1E+02 0.0038 20.3 4.5 34 289-322 23-56 (59)
295 4gq2_M Nucleoporin NUP120; bet 26.6 2.9E+02 0.01 31.1 10.8 105 195-300 814-945 (950)
296 3qye_A TBC1 domain family memb 26.0 3.9E+02 0.013 25.3 10.4 98 533-635 208-311 (331)
297 2crb_A Nuclear receptor bindin 25.7 76 0.0026 23.3 3.6 28 71-98 15-42 (97)
298 1s3q_A Ferritin; ferroxidase, 25.6 3E+02 0.01 23.1 8.9 110 305-427 53-162 (173)
299 4aez_C MAD3, mitotic spindle c 24.7 2E+02 0.0068 25.5 7.0 51 566-616 132-183 (223)
300 2fe3_A Peroxide operon regulat 23.7 2.9E+02 0.0099 22.3 7.8 26 643-668 43-68 (145)
301 4gq2_M Nucleoporin NUP120; bet 23.4 4.5E+02 0.016 29.5 11.6 112 222-338 811-950 (950)
302 1k1a_A B-cell lymphoma 3-encod 22.9 1.5E+02 0.005 26.2 6.4 52 405-456 13-66 (241)
303 1oxz_A ADP-ribosylation factor 22.8 3.6E+02 0.012 23.0 8.2 73 587-666 35-116 (186)
304 3hzj_A Rabgap1L, RAB GTPase-ac 22.8 4.2E+02 0.015 24.7 9.8 47 533-579 174-220 (310)
305 3l6a_A Eukaryotic translation 22.7 5.2E+02 0.018 24.9 15.6 70 224-297 15-89 (364)
306 2zu6_B Programmed cell death p 22.5 3E+02 0.01 25.9 8.4 23 552-574 170-192 (307)
307 2r9g_A AAA ATPase, central reg 21.3 4E+02 0.014 23.0 11.0 91 560-651 26-121 (204)
308 2xig_A Ferric uptake regulatio 21.0 3.2E+02 0.011 22.2 7.4 62 387-449 16-77 (150)
309 1mzb_A Ferric uptake regulatio 20.9 2.7E+02 0.0093 22.1 6.9 26 643-668 40-65 (136)
310 1ug3_A EIF4GI, eukaryotic prot 20.3 5.6E+02 0.019 24.3 10.3 25 551-575 14-38 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=318.13 Aligned_cols=381 Identities=6% Similarity=-0.019 Sum_probs=299.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCcccHHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~m~~~g~~~~~~~~~~l 297 (723)
..+|+.++..|.+.|++++|+++|+++.+.++ .+...+..+...+...+..+.+. .+ +..+...+..+...+|+.+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 57788899999999999999999999987542 25566666666554443332221 11 4555555545555666666
Q ss_pred Hhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 298 MNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 298 l~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
+..+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++... .+.+..+++.++.+|.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE 351 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH
Confidence 66655 6888999999998765 578999999999999999999999999998863 23466789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.|++++|..+++++.... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998654 3478889999999999999999999999998753 45688999999999999999999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~ 533 (723)
|+++.... +.+..+|+.+..+|. ++.++|.
T Consensus 430 ~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 430 YTTAARLF------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHTT------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99887542 346677888888876 4789999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004922 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFE 607 (723)
Q Consensus 534 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 607 (723)
++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|+.++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999987643 37888999999999999999999999999875 66787 7899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEE 665 (723)
Q Consensus 608 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~ 665 (723)
++.+.+ ..+..+|..+..+|.+.|++++| .+.|+++.+.... +...+..+...
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLA---ITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHH---HHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 988753 34789999999999999997774 4578888775432 34455544443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-34 Score=318.59 Aligned_cols=483 Identities=12% Similarity=-0.008 Sum_probs=389.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|......|..++..+.+.|++++|+.++++++...+++ .. +..++..+.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--ND-------AFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--hH-------HHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 43457789999999999999999999999999774433 22 234566789999999999999998753 22
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC--------------CCCcccccHHHHHHHHhcCCChHHHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (723)
+. ..+..++..+.. .|++++|+.+|+++.... ..+.+...|..++..+.+.|++++|.+
T Consensus 149 ~~----~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SS----ACRYLAAFCLVK---LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CH----HHHHHHHHHHHH---TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ch----hHHHHHHHHHHH---HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 355555555444 899999999998532111 012347789999999999999999999
Q ss_pred HhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 213 YACIV----PRADILFCNFVREFGKKRDLVSALRA---YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.|+.+ |.+..++..++..+...+..+.+... +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99885 55666777776666554433332221 455555444445667888888999999999999999999876
Q ss_pred CCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH
Q 004922 286 NVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (723)
Q Consensus 286 g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~ 363 (723)
+++..+|+.+...+. |++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++|+.+... .+.+.
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 373 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKA 373 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccH
Confidence 578889988888754 89999999999998876 457889999999999999999999999999863 34578
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
.+|+.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 89999999999999999999999999876433 68899999999999999999999999998874 55888999999999
Q ss_pred HHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH
Q 004922 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (723)
Q Consensus 444 ~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~ 523 (723)
.+.|++++|.++|+++.... +.+..+|+.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~ 483 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELGV 483 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHHH
Confidence 99999999999999987542 456788999988
Q ss_pred HHh--hcHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004922 524 ACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (723)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 595 (723)
.|. ++.++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 887 4789999999999876 66787 7899999999999999999999999999864 3478999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 004922 596 SKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRAR 628 (723)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 628 (723)
.|++++|.++|+++.+. .| +...+..+...|
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999974 56 455555554443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.1e-30 Score=271.89 Aligned_cols=214 Identities=16% Similarity=0.211 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+||++|.+|++.+....+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 445555666666554433 3577788888888888888888888888888888888888888887665432210
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m 539 (723)
. .++.++|.++|++|
T Consensus 82 -----------------------------------------------------~------------~~~l~~A~~lf~~M 96 (501)
T 4g26_A 82 -----------------------------------------------------P------------NPGLSRGFDIFKQM 96 (501)
T ss_dssp -----------------------------------------------------C------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------h------------cchHHHHHHHHHHH
Confidence 0 01356889999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 620 ~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
||++||.+|++.|+.++ |++++++|.+.|..|+..||+.|+..|+.
T Consensus 177 ty~~Li~~~~~~g~~d~---A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 177 ELAALLKVSMDTKNADK---VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCHHH---HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999766 56699999999999999999999999986
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.8e-29 Score=260.99 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---------VEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~ 433 (723)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 446788889999999999999999999999999999999999999887654 68899999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCc
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 513 (723)
.+|+++|.+|++.|++++|.++|++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~------------------------------------------------------- 130 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQ------------------------------------------------------- 130 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999888887766654
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 514 TTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (723)
Q Consensus 514 ~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 593 (723)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 131 -------------------------M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 131 -------------------------MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp -------------------------HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred -------------------------HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 594 VRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
++.|+.++|.+++++|.+.|+.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.2e-24 Score=218.46 Aligned_cols=294 Identities=13% Similarity=0.091 Sum_probs=174.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhh
Q 004922 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (723)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 156 (723)
++..+.+.|++++|+..+++++.. .|+........ ...+...|++++|...++.+.+. .|+.. ..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l------~~~~~~~~~~~~a~~~~~~a~~~--~p~~~---~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLL------SSIHFQCRRLDRSAHFSTLAIKQ--NPLLA---EAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhc--CCCch---HHHH
Confidence 345566678888888888877777 55543332222 23366777777777777777763 33221 2333
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 004922 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (723)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (723)
.+..++.. .|++++|+..|++++... | .+..++..++..+.+.|+
T Consensus 72 ~lg~~~~~---~g~~~~A~~~~~~al~~~--p------------------------------~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 72 NLGNVYKE---RGQLQEAIEHYRHALRLK--P------------------------------DFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHH---HTCHHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHcC--c------------------------------chHHHHHHHHHHHHHcCC
Confidence 44443333 677777777777776543 3 334566677777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (723)
+++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|+++.+..
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------ 165 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ------------------------------ 165 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------------------
Confidence 7777777777776431 244566677777777788888888777776541
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004922 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 317 ~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (723)
+.+..+|..+...+...|++++|...|+++... .+.+...|..+...+...|++++|...|++.....+.
T Consensus 166 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 166 ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp ----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 223445555555555566666666666655542 1223345555555566666666666666655554322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666666666666666666665542 2344556666666666666666666665543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.7e-23 Score=216.42 Aligned_cols=368 Identities=13% Similarity=0.074 Sum_probs=255.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
+.|++++|+..++.+.+.. |++...+..++..+...+++++|..+++.. |.+..++..++..|.+.|++++|+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3799999999998887755 555554555555555555555554444331 3333444444444444444444444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
.|+++.+.. +.+..+|..+..++.+.| ++++|.+.|+++.+.. +.
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g---------------------------------~~~~A~~~~~~al~~~-p~ 133 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAG---------------------------------DMEGAVQAYVSALQYN-PD 133 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHS---------------------------------CSSHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcC---------------------------------CHHHHHHHHHHHHHhC-CC
Confidence 444444321 112334444444444444 4455555555554432 33
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|.+.|+++... .+.+..+|..+...+...|++++|...|+++...++. +...|.
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 207 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYI 207 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 4556777888889999999999999999873 2345678999999999999999999999999987644 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhh
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
.+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.|+++....
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 267 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------------------- 267 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------
Confidence 99999999999999999999998864 4468889999999999999999999999887532
Q ss_pred hhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
+.+..+|..+...+. ++.++|...++++.+.. +.+..++..+...+.+
T Consensus 268 -----------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 268 -----------------------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp -----------------------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred -----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 223455666666665 46778888888877753 3466777778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 004922 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSR 630 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 630 (723)
.|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ +.| +...|..+...+..
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 888888888888877642 23466777788888888888888888888775 345 34555555444433
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-20 Score=196.55 Aligned_cols=444 Identities=11% Similarity=-0.027 Sum_probs=271.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..+.+.|++++|+..|++++... |+ ...+..++..+...|++++|+..|+++++. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 5677888999999999999999999999995 43 223345566689999999999999999984 45432
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC------CCCcchH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRADILF 224 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~ 224 (723)
..+..+..+ +...|++++|+..|+++.... |.+.......+..+........+.+.+..+ +.+.. +
T Consensus 74 --~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 145 (514)
T 2gw1_A 74 --KVLLRRASA---NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS-T 145 (514)
T ss_dssp --HHHHHHHHH---HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --HHHHHHHHH---HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-C
Confidence 233344443 444899999999999998866 444333333333332222122111111100 00000 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNV 287 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~g~ 287 (723)
..-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0000000000111111111111111100 1124455555554444 7888888888888776 311
Q ss_pred ccc--------HHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 288 TLN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 288 ~~~--------~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.|+ ...+..+..+ ..|+++.|...|+++.... |+...+..+...+...|++++|...++.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 299 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL---- 299 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----
Confidence 111 2222222222 2356666666666666553 22666677777777777777777777777652
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.+.+...+..+...+...|++++|...++++...... +...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 300 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 300 -DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred -CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 2334556777777777777777777777777766433 55677777777777777777777777777653 33556677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHH
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (723)
.+...|.+.|++++|...++.+....... +
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------------------------------~---- 406 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKL----------------------------------------------D---- 406 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTS----------------------------------------------S----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhcc----------------------------------------------c----
Confidence 77777777777777777776654321100 0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (723)
Q Consensus 518 ~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 594 (723)
...-....+..+...+.. .|++++|...++++.+.. +.+...+..+...|.
T Consensus 407 -------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 407 -------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp -------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 000013477788888888 999999999999988753 235778888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (723)
+.|++++|.+.|+++.+. .|+....
T Consensus 461 ~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 999999999999999873 5654433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.7e-19 Score=188.94 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=228.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|.. ...+..++..+.+.|++++|+..|++++.. .|... ..+..++..+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNY------IAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccH------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55567788888 899999999999999999999999999988 55533 2334555668999999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccc---ccHHHHHHHHhcCCChHHHHHHhh
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
+++. .|+.. ..+..+..+ +...|++++|+..|+++.+.. |++. ..+..++..+..
T Consensus 86 al~~--~p~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQL--KMDFT---AARLQRGHL---LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHH--CTTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhc--CCCcH---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 9985 45332 233344443 444899999999999998865 6555 555555443211
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
..+..+...+...|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|++.|+++.+.. +.+..+|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 123334445556666666666666665532 1345566666666666666666666666665542 12344444
Q ss_pred HHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHH------------HHHHHHHcCChHHHHHHHHHHHhhhhcCCccc
Q 004922 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNI------------LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (723)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~------------ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~ 361 (723)
.+..++ .|+++.|.+.|+++.... +.+...+.. +...+...|++++|...|+.+... .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 444432 356666666666665542 223333333 378899999999999999999873 34
Q ss_pred c-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004922 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (723)
Q Consensus 362 ~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (723)
+ ...|..+...+.+.|++++|...++++....+ .+..+|..+..+|...|++++|...++++.+.. +-+...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 4 45788899999999999999999999987643 378899999999999999999999999998853 3345555
Q ss_pred HHHHH
Q 004922 437 NILLQ 441 (723)
Q Consensus 437 ~~ll~ 441 (723)
..+..
T Consensus 367 ~~l~~ 371 (450)
T 2y4t_A 367 EGLEK 371 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.2e-18 Score=183.88 Aligned_cols=312 Identities=10% Similarity=-0.006 Sum_probs=233.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+...+..++..|.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+.+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 90 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----------- 90 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 4445677788888888888888888888887642 2467788888888888888888888888877642
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHH----
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTI---- 369 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~l---- 369 (723)
+.+...+..+..+|.+.|++++|.+.|+++.. ..|+. ..+..+
T Consensus 91 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 91 -----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHH
T ss_pred -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHH
Confidence 23455566666677777777777777777665 22332 333333
Q ss_pred --------HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 370 --------VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 370 --------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
...+...|++++|..+|+++...... +..++..+..+|.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44477888889999998888876433 67788888888888999999998888887753 456788888888
Q ss_pred HHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHH
Q 004922 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL 521 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 521 (723)
+|...|++++|...|+.+.... +.+...+..+
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~------------------------------------------------p~~~~~~~~~ 251 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD------------------------------------------------QDHKRCFAHY 251 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------------------------------------------------TTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC------------------------------------------------CChHHHHHHH
Confidence 8888999999998888876432 1122222222
Q ss_pred ------------HHHHh--hcHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 004922 522 ------------MKACC--TDYYRVKALMNEMRTVGLSPN-----HISWTILIDACGGSGNVEGALQILKIMREDGMSPD 582 (723)
Q Consensus 522 ------------l~~~~--~~~~~a~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 582 (723)
...+. ++.++|...|+.+.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 34443 5789999999999885 344 4478889999999999999999999998752 236
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004922 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLL 625 (723)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 625 (723)
...|..+..+|...|++++|.+.|+++.+ +.|+ ...+..+.
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 88999999999999999999999999987 4564 55555554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.8e-19 Score=193.56 Aligned_cols=425 Identities=11% Similarity=0.004 Sum_probs=299.4
Q ss_pred HHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCccccc
Q 004922 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (723)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 193 (723)
..+......+.+.|++++|+..|+++++. .|+.. ..+..+..+ +...|++++|+..|+++++.. |++...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~---~~~~~la~~---~~~~g~~~~A~~~~~~al~~~--p~~~~~ 95 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP---VFYSNISAC---YISTGDLEKVIEFTTKALEIK--PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH---HHHHHHHHH---HHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc---HHHHHHHHH---HHHcCCHHHHHHHHHHHHhcC--CchHHH
Confidence 34455666689999999999999999984 45432 333344443 444899999999999999866 788888
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHH
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCG 267 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 267 (723)
+..++..+...|++++|...++.+..++......+..+...+....|...++.+.... ..|+. ..+..+.
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 8889999999999999998887654444444444556666677788888888876531 12332 2333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccH-HHHHHHHhhhc----------CChHHHHHHHHHHHHcCCCcC-------hhhHHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNI 329 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~----------~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ 329 (723)
...+.+.+...+...... .+.. .....+...+. ++++.|..+|+++.+.. +.+ ..++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 555665555544333221 1221 12222222221 36788889999888754 222 234666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+...+...|++++|...|+.+.. ..|+...+..+...+...|++++|...++++...... +..+|..+...+.
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 77788899999999999999987 4567778889999999999999999999999887543 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcccc
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (723)
..|++++|...++++.+.. +.+...+..+..+|...|++++|...++.+....
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------- 374 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-------------------------- 374 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------
Confidence 9999999999999998864 4456788889999999999999999999877542
Q ss_pred ccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcC-
Q 004922 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLS-----PNHISWTILIDACGGS- 561 (723)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~-----p~~~~~~~li~~~~~~- 561 (723)
+.+...+..+...+. ++.++|...++.+.+.... .....+..+...+...
T Consensus 375 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 375 ----------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp ----------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 223445555555554 5788999988888764211 1122244445666777
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004922 562 ---------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (723)
Q Consensus 562 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (723)
|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.|++..+.
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998753 235778889999999999999999999998874
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-19 Score=188.71 Aligned_cols=429 Identities=9% Similarity=-0.012 Sum_probs=283.8
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 239 (723)
.+...|++++|+..|++++... | +...+..++..+...|++++|...++.+ |.+..++..++..|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 3445899999999999998866 4 4556666777777777777777766553 5555667777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~ 317 (723)
|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+..-... ..........+...+..
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 7777777766542 23333333333333333333333333222222111111111110000 00011111111111111
Q ss_pred cCC---------CcChhhHHHHHHHHHH---cCChHHHHHHHHHHHh-----hhhcCCc----cccHHHHHHHHHHHHcc
Q 004922 318 LGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYSTIVKVFADA 376 (723)
Q Consensus 318 ~g~---------~~~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~-----~~~~g~~----~~~~~~~~~ll~~~~~~ 376 (723)
... +.+...+..+...+.. .|++++|...|+++.. ....... +.+...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 110 1123344444444444 7999999999999876 2101000 23456788889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
|++++|...|+++...... ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999887544 8888999999999999999999999998764 446778889999999999999999999
Q ss_pred HHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh--hcHHHHHH
Q 004922 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKA 534 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~a~~ 534 (723)
+...... +.+...+..+...+. ++.++|..
T Consensus 328 ~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 328 DKAKELD------------------------------------------------PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HHHHHTC------------------------------------------------SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHhC------------------------------------------------hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9876532 223445556656555 47899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHH
Q 004922 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SKRLKQAFSLF 606 (723)
Q Consensus 535 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~ 606 (723)
.++.+.+.. +.+..++..+...|.+.|++++|...++++.+... .++ ...|..+...|.. .|++++|.+.|
T Consensus 360 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 360 LFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 999988753 23567888899999999999999999999886321 112 3488899999999 99999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 004922 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (723)
Q Consensus 607 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~ 652 (723)
+++.... ..+..++..+...+.+.|++++ |...|++..+...
T Consensus 439 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 439 EKASKLD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADLAR 480 (514)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHCS
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhcc
Confidence 9998742 3368888999999999999777 4558888877653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=2.5e-17 Score=178.19 Aligned_cols=403 Identities=7% Similarity=-0.043 Sum_probs=211.7
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+.+.|++++|+..|++++.. .|.... .+..+...+...|++++|+..|+++++. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPV------FYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3677888899999999999999999999988 555433 3344555588999999999999999874 45432
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC------------
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------ 217 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------ 217 (723)
..+..+.. .+...|++++|+..|+ ..... |+....+ +..+...+....|...++..
T Consensus 94 ---~~~~~la~---~~~~~g~~~~A~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 94 ---KALLRRAS---ANESLGNFTDAMFDLS-VLSLN--GDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp ---HHHHHHHH---HHHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred ---HHHHHHHH---HHHHcCCHHHHHHHHH-HHhcC--CCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 23333333 3444799999999986 33322 2221111 11122222223344433332
Q ss_pred -------------------------CCCcch----HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC-----
Q 004922 218 -------------------------PRADIL----FCNFVREFGK--------KRDLVSALRAYDASKKHLSSPN----- 255 (723)
Q Consensus 218 -------------------------~~~~~~----~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~----- 255 (723)
...... ...+...+.. .|++++|..+|+.+.+.... +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 111111 1112211111 13556666666666553211 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 004922 256 --MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (723)
Q Consensus 256 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 331 (723)
..++..+...+...|++++|...|+.+.+.. |+...+..+..++ .|+++.|.+.|+++.+.. +.+..++..+.
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHH
Confidence 1234445555555666666666666665542 2233333333332 245555555555555443 23445555555
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 332 ~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
..+...|++++|...|+++... .+.+...+..+...+...|++++|..+++++...... +...+..+...+...
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL-----NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 5555556666666655555542 1123345555555555556666666555555544322 344555555555555
Q ss_pred CCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhc
Q 004922 412 GLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (723)
|++++|...|+++.+.. .......+......+.+.+..
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------------------------------------- 434 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ------------------------------------- 434 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc-------------------------------------
Confidence 55555555555554321 001111122222223333000
Q ss_pred cccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 004922 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (723)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 564 (723)
-..+ .++.++|...++.+.+.. +.+...+..+...|.+.|++
T Consensus 435 -----------------------------------~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 435 -----------------------------------DPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------------cchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 0000 034455566666655542 23567888899999999999
Q ss_pred HHHHHHHHHHHHC
Q 004922 565 EGALQILKIMRED 577 (723)
Q Consensus 565 ~~A~~~~~~m~~~ 577 (723)
++|...|++..+.
T Consensus 479 ~~A~~~~~~al~~ 491 (537)
T 3fp2_A 479 DEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=2.4e-16 Score=160.57 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=209.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+...|++++|+..|++++.. .|.... .+..+...+...|++++|+..|+++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYI------AYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHH------HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567788899999999999999999999998 555433 3344555588999999999999999984 45332
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC---cccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (723)
..+..+.. .+...|++++|+..|+++.+.. | +....+..++.... ...+..+
T Consensus 72 --~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 --AARLQRGH---LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp --HHHHHHHH---HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred --hHHHHHHH---HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 23333333 3444899999999999998765 5 55555554422110 0112223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCCh
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDL 305 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~ 305 (723)
...+...|++++|...|+.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+ ..|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4444455555555555555444321 234445555555555555555555555554432 1122233322222 22455
Q ss_pred HHHHHHHHHHHHcCCCcChhh------------HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-----HHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMAS------------YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----FTYST 368 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~------------~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-----~~~~~ 368 (723)
+.|.+.|+...+.. +.+... ...+...+.+.|++++|...++.+... .|+. ..+..
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 55555555554432 112222 223466788999999999999999873 2332 23556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+...+...|++++|...+++..+..+. +..++..+...+.+.|++++|...|++..+.. +-+...+..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 778899999999999999999986433 78899999999999999999999999998863 334555655555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.2e-15 Score=152.19 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=144.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|+..|+.+.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Confidence 4566677778888888888888888776432 356778888888888888888888887776542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc----cHHHHHHH--------
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTI-------- 369 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~----~~~~~~~l-------- 369 (723)
+.+...+..+...+...|++++|...|+.+.. ..| +...+..+
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHH
Confidence 22344555666666666666666666666655 233 22233333
Q ss_pred ----HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 370 ----VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 370 ----l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
...+...|++++|..+++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 56778888999999999888876543 67788888888888999999999998888764 5577788888888888
Q ss_pred hCCHHHHHHHHHHhhhh
Q 004922 446 ACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~~ 462 (723)
.|++++|...++.....
T Consensus 201 ~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKL 217 (359)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999888877653
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=186.17 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (723)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345777788888888888888887777653 46777888888888888888888888888888877777888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 624 LLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 624 ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
+|.++++.|+.. ++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~--e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDA--GTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCH--HHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcH--HHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888777777632 1245577778777888887777777777666
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.2e-13 Score=153.37 Aligned_cols=389 Identities=12% Similarity=0.086 Sum_probs=244.2
Q ss_pred HHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccc-hhhhhHHH------------------------HHHhhccc
Q 004922 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS-GFKLLKNE------------------------CQRLLDSG 169 (723)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-~~~~l~~~------------------------~~~~~~~g 169 (723)
.+...+.+|...|.+.+|+++|+++.- .|+.+..+. .-+.++.. +..+.+.|
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 345678889999999999999999993 454222222 22223322 22233456
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 170 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
.+++|..+|++... ....+...+...+++++|.++.++. .++.+|..+..++...|++++|.+.|.+.
T Consensus 1064 lyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 66666666666310 0111112222556666666666655 44677777788888888888888777553
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcChhhH
Q 004922 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASY 327 (723)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~ 327 (723)
.|...|..++..|.+.|++++|++.|...++..-.+...+. +..+++ ++++..... .. .++...|
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele~f----I~---~~n~ad~ 1198 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELEEF----IN---GPNNAHI 1198 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHHHH----Hh---CCCHHHH
Confidence 45667777777788888888888887776655322223333 333333 444432222 22 3455666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (723)
..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++. .+..+|..+..+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 66777777888888888877753 25777778888888888888888765 256778777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhcc
Q 004922 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (723)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++......
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le------------------------ 1310 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE------------------------ 1310 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------------------------
Confidence 88888877777765532 4466677788888999999999999997654321
Q ss_pred ccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh----cHHHHHHHHHHHHHcCCCC------CHHHHHHHHHH
Q 004922 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----DYYRVKALMNEMRTVGLSP------NHISWTILIDA 557 (723)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~a~~l~~~m~~~~~~p------~~~~~~~li~~ 557 (723)
.-....|.-+...+++ +..+..++|..-.. ++| +...|.-++..
T Consensus 1311 ------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1311 ------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred ------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHH
Confidence 1223345555555554 34444455443222 333 46678999999
Q ss_pred HHcCCCHHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHH
Q 004922 558 CGGSGNVEGALQILK-------------IMREDGMSPDVVAYTTAIKVCVRSK---------------RLKQAFSLFE 607 (723)
Q Consensus 558 ~~~~g~~~~A~~~~~-------------~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 607 (723)
|.+.|+++.|....- .... -..|...|...+.-|...+ +.+++.++|.
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 999999999884322 1111 1346677777777777655 6666666665
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.2e-14 Score=154.22 Aligned_cols=334 Identities=9% Similarity=0.010 Sum_probs=189.9
Q ss_pred hccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 61 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
+.+..+|.+ ...|..++. +.+.|++++|..+|++++.. .|.....+.. .+..+.+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~------~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKL------YIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHH------HHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHH
Confidence 456778888 888888888 47889999999999999998 6665444333 3444678899999999999999
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHH----HHHHHHhc-CCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
+. .|+.. .+..++.... ...|++++|.+ +|++.+.. |..+++...|...+.......
T Consensus 74 ~~--~p~~~----lw~~~~~~~~--~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~---------- 135 (530)
T 2ooe_A 74 MK--VLHID----LWKCYLSYVR--ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE---------- 135 (530)
T ss_dssp TT--CCCHH----HHHHHHHHHH--HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC----------
T ss_pred hc--CCChH----HHHHHHHHHH--HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC----------
Confidence 74 46321 2323322111 12456555554 66665432 333433333433333222100
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
.. . .+...|+++.|..+|++..+. +..+ ...|..........+. .+.
T Consensus 136 ---~~-~-------~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 136 ---AV-G-------SYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp ---CC-S-------STTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred ---Cc-c-------cHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 00 0 012367888888888888772 1111 2233322221110110 011
Q ss_pred HHHHhhhcCChHHHHHHHHHHH------HcC---CCcC--------hhhHHHHHHHHHHc----CCh----HHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGE 349 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~----~~~----~~A~~~~~~ 349 (723)
..++....+++..|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1111111122333443333321 110 1222 12333333222221 222 356667777
Q ss_pred HHhhhhcCCccccHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 350 VKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 350 ~~~~~~~g~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
.... .+.+...|..++..+.+ .|+++ +|..+|++....-.+-+...|..++..+.+.|+++
T Consensus 264 al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 264 CLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 7654 34566777777777664 67766 88888888875212235677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 416 QAMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++...
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888875 343 2 4777777777788888888888888764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.9e-15 Score=147.39 Aligned_cols=302 Identities=9% Similarity=-0.047 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
.+.+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 456667788888888888999999999888877532 345566677777888888888888888776541
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~ 375 (723)
+.+...+..+...+...| ++++|...|+++... .+.+...|..+...+..
T Consensus 87 ------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 87 ------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-----EKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-----CTTCTHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHH
Confidence 335667777888888888 888899888888762 23346678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l 455 (723)
.|++++|...++++...... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999988876533 45667778888999999999999999988764 55678888899999999999999999
Q ss_pred HHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHH
Q 004922 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l 535 (723)
+++......... +
T Consensus 216 ~~~a~~~~~~~~----------------------------------------------~--------------------- 228 (330)
T 3hym_B 216 FLDALEKIKAIG----------------------------------------------N--------------------- 228 (330)
T ss_dssp HHHHHHHHTTTS----------------------------------------------C---------------------
T ss_pred HHHHHHHhhhcc----------------------------------------------c---------------------
Confidence 887654321000 0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004922 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (723)
Q Consensus 536 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (723)
....+.+..++..+...|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|.+.|+++.+. .
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 300 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--R 300 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--C
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--C
Confidence 00112345678888999999999999999999998753 235778888999999999999999999998763 4
Q ss_pred C-CHHHHHHHHHHH-HhcCChH
Q 004922 616 P-NLVTYITLLRAR-SRYGSLH 635 (723)
Q Consensus 616 p-~~~~~~~ll~~~-~~~g~~~ 635 (723)
| +...+..+..++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 5 677777777776 4566544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.1e-15 Score=150.41 Aligned_cols=281 Identities=11% Similarity=-0.034 Sum_probs=225.5
Q ss_pred HhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC-CHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-DLV 238 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~ 238 (723)
.+...|++++|+.+|+++++.. |.....+..++..+...|++++|...++.+ |.+..++..+...+...| +++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHH
Confidence 3444899999999999999866 777888888899999999999999987774 777889999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (723)
+|...|+.+.+... .+...|..+...+...|++++|...|+++.+.... +......+.+....|+++.|.+.+++..+
T Consensus 109 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 109 HARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999987532 35778999999999999999999999999886432 22333333333455899999999999988
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC----ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
.. +.+...+..+...+...|++++|...++++........ .+.+...+..+...+...|++++|...+++..+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 65 45678888999999999999999999999887432110 13345688999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCHH
Q 004922 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQFD 450 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~ 450 (723)
.. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 267 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 PQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred cc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 43 67888999999999999999999999987753 34667777777777 3455543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3e-13 Score=143.81 Aligned_cols=346 Identities=12% Similarity=0.035 Sum_probs=265.6
Q ss_pred ccccHHHHHHHHhc----CCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH
Q 004922 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (723)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 259 (723)
+......++..+.. .+++++|...+.+. ..+..++..|...|.. .+++++|...|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556666777766 78888888888764 3455778888888888 889999999999988753 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh------cCChHHHHHHHHHHHHcCCCcChhhHHH
Q 004922 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (723)
Q Consensus 260 ~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 329 (723)
..|...|.. .+++++|...|++..+.| +...+..+-..+ .++++.|.+.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888887 789999999999988876 233333333322 458899999999988864 6777888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 330 ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
|...|.. .++.++|.+.|++... . .+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT---S----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH---C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888887 8899999999998875 2 356677777777775 789999999999988764 55677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhhhhhcccccCCcC
Q 004922 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (723)
Q Consensus 402 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~l~~~~~~~~~~~~~~~~~ 472 (723)
..+...|.. .++.++|..+|++..+.| +...+..+...|... ++.++|...|++..+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 777777877 889999999999988764 556777777777776 89999999998876532
Q ss_pred CCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhh-----cHHHHHHHHHHHHHcCCCCC
Q 004922 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPN 547 (723)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-----~~~~a~~l~~~m~~~~~~p~ 547 (723)
+...+..+-..|.. +.++|...|+...+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 22334444444432 6788999998888863 5
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004922 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQ 613 (723)
Q Consensus 548 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 613 (723)
...+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|.+.|++..+.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6777778888887 789999999999998865 57778888888887 789999999999988765
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.1e-13 Score=148.70 Aligned_cols=403 Identities=10% Similarity=0.057 Sum_probs=249.3
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|.+...|..++.. .+.|+++.|..+|+. .|.+...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4455555555552 445555555555544 2555566666666666666666666666666653 24555555555
Q ss_pred HH-HHhcCCHHHHHH----HHHHHHhC-CCcc-cHHHHHHHHhhh-----------cCChHHHHHHHHHHHHcCCCcChh
Q 004922 264 DV-CGICGDYMKSRA----IYEDLRSQ-NVTL-NIYVFNSLMNVN-----------AHDLKFTLEVYKNMQKLGVMADMA 325 (723)
Q Consensus 264 ~~-~~~~g~~~~a~~----~~~~m~~~-g~~~-~~~~~~~ll~~~-----------~~~~~~a~~~~~~m~~~g~~~~~~ 325 (723)
.. ....|+.++|.+ +|+..... |..| +...|...+... .++++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 42 223455544443 55544432 4332 344555444432 245566666666666521000012
Q ss_pred hHHHHHHHH-------------HHcCChHHHHHHHHHHHhhhh---cC--Ccccc--------HHHHHHHHHHHHcc---
Q 004922 326 SYNILLKAC-------------CLAGNTVLAQEIYGEVKHLEA---KG--VLKLD--------VFTYSTIVKVFADA--- 376 (723)
Q Consensus 326 ~~~~ll~~~-------------~~~~~~~~A~~~~~~~~~~~~---~g--~~~~~--------~~~~~~ll~~~~~~--- 376 (723)
.|....... ...+++..|..++........ .. .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211110 123456777777766433211 00 02333 24555555333221
Q ss_pred -CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 004922 377 -KWW----QMALKVKEDMLSAGVTPNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 377 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
++. +.+..+|++.+...+. +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 4778899998876433 67888888888775 78876 8999999988632345688899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcC-H-
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T- 515 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~- 515 (723)
.+...+.+.|++++|..+|+++... .|+ .
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~ 356 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI-------------------------------------------------EDIDPT 356 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-------------------------------------------------SSSCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc-------------------------------------------------cccCch
Confidence 9999999999999999999988753 333 2
Q ss_pred HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004922 516 TTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIK 591 (723)
Q Consensus 516 ~~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~ 591 (723)
..|...+..+. ++.++|..+|+...+... .+...|...... +...|+.++|..+|++..+. .| +...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 36666666654 468899999999987522 223333332222 33689999999999998875 34 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 592 VCVRSKRLKQAFSLFEEMKHYQ-IQP--NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
.+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+.. +++++.+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~---~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK---VEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH---HHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 9999999999999999998753 233 25588888888889999777554 5555554
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.4e-15 Score=155.62 Aligned_cols=259 Identities=14% Similarity=0.001 Sum_probs=196.4
Q ss_pred ccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004922 192 DEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (723)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (723)
..+..++..+...|++++|...++.+ |.+..++..++..|...|++++|+..|+.+.+.. +.+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 33445555555555555555554442 4555677778888888888888888888887753 236778888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccHHH------------------HHHHHhhhcCChHHHHHHHHHHHHcCCCc-ChhhHH
Q 004922 268 ICGDYMKSRAIYEDLRSQNVTLNIYV------------------FNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYN 328 (723)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~g~~~~~~~------------------~~~ll~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~ 328 (723)
..|++++|...|+++.+......... ...+ ...|+++.|...|+++.+..... +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL--LSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH--HHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH--hhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 88888888888888877642211111 1111 14478889999999998764221 578899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+...+...|++++|...|+++... .+.+...|..+...+...|++++|...|+++....+ .+..++..+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 295 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 9999999999999999999999873 234577899999999999999999999999988653 3678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 409 ANAGLVEQAMHLFEEMLQAGCE----------PNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
.+.|++++|...|+++.+.... ....+|..+..+|...|+.++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999998874211 12688999999999999999999988643
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=2.1e-12 Score=143.56 Aligned_cols=339 Identities=11% Similarity=0.109 Sum_probs=213.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHH-------------------HhHHHhhhccCcc
Q 004922 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMV-------------------ASGIVKSIREGRI 129 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~-------------------~~~~~~~~~~g~~ 129 (723)
.-....+.+|...|.+.+|+.++++.+-... +-....-++...++ ..+...+...|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 3445667788899999999999999983321 00011111111110 1134557789999
Q ss_pred chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 130 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
++|..+|++... +....+.++. ..+++++|.++.++. +....|+.+++++...|++++
T Consensus 1066 EEAf~IYkKa~~---------~~~A~~VLie------~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV---------NTSAVQVLIE------HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHHHcCC---------HHHHHHHHHH------HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence 999999998642 1123344432 268899999998864 456789999999999999999
Q ss_pred HHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 004922 210 AIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 210 A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 289 (723)
|+..|.+. ++...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..... + .+
T Consensus 1124 AIdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1124 AIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 99999886 667888899999999999999999999887754 33334445888899999988543332 2 23
Q ss_pred cHHHHHHHHhhh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh------------
Q 004922 290 NIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA------------ 355 (723)
Q Consensus 290 ~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------------ 355 (723)
+...|..+-..+ .|+++.|...|... ..|..+...|++.|++++|.+.+++......
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 444555444433 27899999999885 3788899999999999999998876532100
Q ss_pred -------cC-CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 004922 356 -------KG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA--GLVEQAMHLFEEML 425 (723)
Q Consensus 356 -------~g-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 425 (723)
-| .+..+...+..++..|.+.|.+++|+.+++..+... ......|+-+...|++. ++..++.++|..-.
T Consensus 1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 00 011122234445555555555555555555554332 11233444444444432 22222222222111
Q ss_pred HcCCCC------CHHHHHHHHHHHHHhCCHHHHHH
Q 004922 426 QAGCEP------NSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 426 ~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.+++ +...|..++..|.+.|+++.|..
T Consensus 1344 --ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 --NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred --ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1111 34456666666666666666653
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=177.33 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=115.6
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
..-..|||+||++||+.|++++|.++|+.|..+...| +.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3446799999999999999999999999998765566 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 004922 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (723)
Q Consensus 401 ~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (723)
|+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999998 578999999999999999999999999877664
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.2e-12 Score=139.15 Aligned_cols=352 Identities=11% Similarity=0.025 Sum_probs=282.0
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcc
Q 004922 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~ 289 (723)
+.+..+...+...|.. .+++++|+..|....+. .+...+..|...|.. .+++++|...|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3455778888888888 89999999999999885 467788899999998 899999999999999876
Q ss_pred cHHHHHHHHhh--h----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCc
Q 004922 290 NIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 290 ~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
+...+..+-.. . .++++.|.+.|++..+.| ++..+..|...|.. .+++++|.+.|++... .
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~---~--- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE---Q--- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T---
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---C---
Confidence 33333333332 2 458999999999998875 56777788888887 7899999999999876 2
Q ss_pred cccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 004922 360 KLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEP 431 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~ 431 (723)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 181 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred -CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 367788888888887 899999999999999875 56778888888886 889999999999998764
Q ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCcccccc
Q 004922 432 NSQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (723)
Q Consensus 432 ~~~~~~~ll~~~~~----~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (723)
+...+..+-..|.. .++.++|...|++..+.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------------------------------- 289 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------------------------------- 289 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------------------------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence 56677777777877 899999999999876432
Q ss_pred ccCCCcCHHHHHHHHHHHh-------hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHC
Q 004922 508 RFSFKPTTTTYNILMKACC-------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMRED 577 (723)
Q Consensus 508 ~~~~~p~~~~~~~ll~~~~-------~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 577 (723)
+...+..+-..|. ++.++|...++...+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 290 ------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 290 ------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp ------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 2223333333332 57899999999999865 4566777788887766 889999999999986
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHH
Q 004922 578 GMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 578 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~a~~~~~~m~~ 649 (723)
| +...+..+...|.. .++.++|.+.|++..+.| +...+..+-..|.+ .++.++ |...|++..+
T Consensus 361 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A~~~~~~A~~ 431 (490)
T 2xm6_A 361 G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---AWAWFDTAST 431 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHH
Confidence 4 67888899999998 899999999999999865 57788888888887 778665 5668888888
Q ss_pred cCCC
Q 004922 650 AGYK 653 (723)
Q Consensus 650 ~g~~ 653 (723)
.|..
T Consensus 432 ~~~~ 435 (490)
T 2xm6_A 432 NDMN 435 (490)
T ss_dssp HHCC
T ss_pred CCCC
Confidence 8754
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=1.2e-15 Score=156.03 Aligned_cols=288 Identities=11% Similarity=-0.000 Sum_probs=213.2
Q ss_pred hhccCccchHHH-HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH
Q 004922 123 SIREGRIDCVVG-VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (723)
Q Consensus 123 ~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (723)
+...|++++|++ .|++..+ +.|+.... ....+......+...|++++|+..|+++++.. |.....+..++..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~--~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQ--FEEENPLR--DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQ 108 (368)
T ss_dssp -----------CHHHHCCCC--CCSSCTTT--TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHh--cCCCCccc--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 345688899988 8887775 34432210 11122233334445899999999999998865 77888889999999
Q ss_pred hcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------H
Q 004922 202 VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT---------------I 262 (723)
Q Consensus 202 ~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l 262 (723)
...|++++|...++.+ |.+..++..++..|...|++++|...|+.+.+.... +...+.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 9999999999988764 777788999999999999999999999999875432 2222221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC
Q 004922 263 IDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (723)
Q Consensus 263 ~~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 339 (723)
+..+...|++++|...|+++.+..... +..++..+..+ ..|+++.|...|+++.... +.+..++..+...+...|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 333348899999999999998874331 46666666554 3489999999999998764 4567889999999999999
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP----------NTITWSSLINACA 409 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~ 409 (723)
+++|...|+++... .+.+...+..+...|.+.|++++|...|+++....... ...+|..+..+|.
T Consensus 267 ~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 267 SEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 99999999999873 23457789999999999999999999999998653221 2678999999999
Q ss_pred hcCCHHHHHHHHHH
Q 004922 410 NAGLVEQAMHLFEE 423 (723)
Q Consensus 410 ~~g~~~~a~~~~~~ 423 (723)
..|++++|..++.+
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=5.3e-15 Score=151.10 Aligned_cols=197 Identities=9% Similarity=-0.108 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..++..+.+.|++++|+..|+.+.+.. +.+..+|..+...|...|++++|+..|+++.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3558889999999999999999999998753 2468889999999999999999999998877541
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-----------HHHHHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----------FTYSTI 369 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-----------~~~~~l 369 (723)
+.+..++..+...|...|++++|...|+++... .|+. ..+..+
T Consensus 130 --------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 130 --------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ------NPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHCC--------------
T ss_pred --------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CccchHHHhhhccchHHHHHH
Confidence 334667778888888888888888888888763 2321 122334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 004922 370 VKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (723)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (723)
...+...|++++|..+|+++....+. ++..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 56666777777777777777665322 145666666667777777777777777666543 3355566666666666666
Q ss_pred HHHHHHHHHHh
Q 004922 449 FDRAFRLFRSW 459 (723)
Q Consensus 449 ~~~a~~l~~~~ 459 (723)
+++|...|++.
T Consensus 263 ~~~A~~~~~~a 273 (365)
T 4eqf_A 263 SEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=2.6e-15 Score=149.55 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.|+.++|.++++++- ....|+.++.++.+.|++++|++.|.+.+ +...|..++..+...|++++|+..++..
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 688899999888862 22478888888888888888888887764 4558888888888888888888877666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhH
Q 004922 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASY 327 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 327 (723)
.+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------~pn~~a~ 125 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------GPNNAHI 125 (449)
T ss_dssp -----------------------CHHHHTTTTT----------------------------------------CC-----
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------------------------CCcHHHH
Confidence 653 3556778888888888888888776663 2444466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407 (723)
Q Consensus 328 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (723)
+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+
T Consensus 126 ~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 126 QQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp -----------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 66666666666666666666643 14666666666666666666666665 156666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
|...|+++.|...... +...+.....++..|.+.|.+++|..+++...
T Consensus 187 Cv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666443332 22333334456666666666666666666554
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1e-14 Score=148.92 Aligned_cols=256 Identities=13% Similarity=0.016 Sum_probs=193.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (723)
+..++..+.+.|++++|+..++.+ |.+..++..++..|...|++++|+..|+++.+.. +.+..++..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 444444444444444444444432 5556778888888888889999999988888753 23577888888889999
Q ss_pred CCHHHHHHHHHHHHhCCCcccH-HHHH----------HHHhh--hcCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHH
Q 004922 270 GDYMKSRAIYEDLRSQNVTLNI-YVFN----------SLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (723)
Q Consensus 270 g~~~~a~~~~~~m~~~g~~~~~-~~~~----------~ll~~--~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~ 335 (723)
|++++|+..|+++.+.. |+. ..+. .+... ..|++++|.+.|+++...... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99999999998887753 221 1111 11222 336888899999998876422 16888999999999
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|.+.|+++... .+.+..+|..+..+|...|++++|...|+++.+..+. +..++..+..+|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 2446789999999999999999999999999987533 6888999999999999999
Q ss_pred HHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004922 416 QAMHLFEEMLQAGC---E--------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (723)
Q Consensus 416 ~a~~~~~~~~~~~~---~--------~~~~~~~~ll~~~~~~g~~~~a~~l~~~ 458 (723)
+|...|+++.+... . .+..+|..+..++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999886421 1 1357789999999999999998887754
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=5.9e-14 Score=148.90 Aligned_cols=370 Identities=11% Similarity=-0.046 Sum_probs=240.1
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---C
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~ 144 (723)
....|+.|+..+...|++++|+..|+++++... .+.. ...-....+.++...|...|++++|+..++++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 467899999999999999999999999877521 1100 011123345677777999999999999999887631 1
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHH---hcCCChHHHHHHhhh----C
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC---VNKPDVNLAIRYACI----V 217 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~----~ 217 (723)
.+........+.....+... ...+++++|+..|++.++.. |+++..+..++.++ ...++.++|++.+++ -
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~-~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLK-CGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11111111122222111111 22468999999999999866 88877777766653 446777778777665 3
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH
Q 004922 218 PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 293 (723)
|.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+... -+...
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 6666777776655554 467889999999988753 24678899999999999999999999999987632 23334
Q ss_pred HHHHHhhhc---------------------CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 294 FNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 294 ~~~ll~~~~---------------------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+..+-.++. +..+.|...|....... +.+...+..+...+...|++++|.+.|++...
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 433322211 13466777788777654 45677888899999999999999999999876
Q ss_pred hhhcCCccccHH----HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 353 LEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 353 ~~~~g~~~~~~~----~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..++.. .+..+.. .+...|++++|+..|.+.+... |+....... ...+..++....+.
T Consensus 363 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 363 ------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQKIAKMRLSK 425 (472)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred ------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHHHHHHHHHh
Confidence 233322 2233322 2457899999999999998863 443322222 23444555555554
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhc
Q 004922 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~ 464 (723)
. +.+..+|..+...|...|++++|.+.|++..+.+.
T Consensus 426 ~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 426 N-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp C-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 55778899999999999999999999998876543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=3.6e-14 Score=142.36 Aligned_cols=259 Identities=8% Similarity=-0.064 Sum_probs=197.1
Q ss_pred HHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHH
Q 004922 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
...+...|++++|+.+|+++++.. |.+..++..++..+...|++++|.
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 75 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAA--------------------------------PEREEAWRSLGLTQAENEKDGLAI 75 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334444677777777776665533 334456667777788888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH-----------------HhhhcCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-----------------MNVNAHD 304 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----------------l~~~~~~ 304 (723)
..|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+ +....|+
T Consensus 76 ~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 76 IALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHH
T ss_pred HHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc
Confidence 8888877653 236677888888888888888888888888765321 11122221 1223367
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
++.|.+.++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|..
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999988765 447888999999999999999999999999873 23457789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCHHHHH
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
.++++.+.... +..++..+...+.+.|++++|...++++.+..... +..++..+..++.+.|+.++|.
T Consensus 228 ~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 228 AYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999886533 67889999999999999999999999988753221 4778999999999999999999
Q ss_pred HHHHHhhh
Q 004922 454 RLFRSWTL 461 (723)
Q Consensus 454 ~l~~~~~~ 461 (723)
.+++....
T Consensus 307 ~~~~~~l~ 314 (327)
T 3cv0_A 307 LTYAQNVE 314 (327)
T ss_dssp HHTTCCSH
T ss_pred HHHHHHHH
Confidence 99875543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=7.5e-14 Score=139.96 Aligned_cols=264 Identities=10% Similarity=-0.106 Sum_probs=176.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|..+|+++.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 5677888889999999999999999887532 467788888999999999999999998877542
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHH-----------
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTI----------- 369 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~l----------- 369 (723)
+.+..++..+...+...|++++|.+.++++... .|+. ..+..+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS------QPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------STTTTTC---------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHhHHHHHHHHHH
Confidence 234556666777777777777777777777652 2222 122222
Q ss_pred ---HH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 370 ---VK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 370 ---l~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
.. .+...|++++|...++++...... +...+..+...+.+.|++++|...++++.+.. +.+..++..+...+..
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLAN 218 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 11 256667777777777777665433 56667777777777777777777777766653 3355666666666767
Q ss_pred hCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH
Q 004922 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 525 (723)
.|++++|...++++...
T Consensus 219 ~~~~~~A~~~~~~a~~~--------------------------------------------------------------- 235 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDI--------------------------------------------------------------- 235 (327)
T ss_dssp TTCHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 77777766666554321
Q ss_pred hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHH
Q 004922 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----------DVVAYTTAIKVCV 594 (723)
Q Consensus 526 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~ 594 (723)
.+.+...+..+...|.+.|++++|...++++.+..... +...|..+..+|.
T Consensus 236 ------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 236 ------------------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 01234556666777777777777777777776532111 2556777777777
Q ss_pred HcCCHHHHHHHHHHH
Q 004922 595 RSKRLKQAFSLFEEM 609 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m 609 (723)
+.|+.++|.+++++.
T Consensus 298 ~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 VMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHH
Confidence 777777777776643
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=5.9e-14 Score=137.30 Aligned_cols=252 Identities=9% Similarity=-0.022 Sum_probs=142.7
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHH
Q 004922 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (723)
Q Consensus 81 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~ 160 (723)
..-.|++.+|+..+++.... +|... ......+.+.|...|+++.|+..++. ..|. ....+..+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~---~~~a~~~la~ 73 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKP-----SSAP---ELQAVRMFAE 73 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhcc-----cCCh---hHHHHHHHHH
Confidence 34478888888888776554 45431 11112345667888888888876543 1221 1123333333
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHH
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (723)
.+...|+.++|++.+++++..+..|++...+..++..+...|++++|++.++. |.+..++..++..|.+.|++++|
T Consensus 74 ---~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 74 ---YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp ---HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 33347888888888888877655566666666666666666666666666665 45555555555566666666666
Q ss_pred HHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 004922 241 LRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (723)
.+.|+.+.+.. |+... ....+..+...|++++|..+|+++.+
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--------------------------------- 194 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--------------------------------- 194 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---------------------------------
Confidence 66666555432 22110 01111222223444444444444433
Q ss_pred cCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004922 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (723)
Q Consensus 318 ~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~ 392 (723)
.. +.++..++.+..++.+.|++++|...|+++... .+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 195 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 195 KC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 21 345666666666677777777777777766652 12345566666666666666654 45666666654
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.2e-13 Score=143.18 Aligned_cols=194 Identities=11% Similarity=-0.070 Sum_probs=95.8
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHhc-------CCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--------
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-------- 217 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------- 217 (723)
..++.+..++.. .|++++|++.|++.++. ...+.....+..++.++...|++++|...++++
T Consensus 52 ~~yn~Lg~~~~~---~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 52 TMCNLLAYLKHL---KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 355666555544 79999999999887642 112333445556666666666666666555442
Q ss_pred ----CCCcchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCc
Q 004922 218 ----PRADILFCNFVREFGKK--RDLVSALRAYDASKKHLSSPNMYICRTIIDV---CGICGDYMKSRAIYEDLRSQNVT 288 (723)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g~~ 288 (723)
+....++..+..++... +++++|+..|++..+..+ -+...+..+..+ +...++.++|++.|++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 01123344444333332 346666666666555321 133333333333 2233555555555555554321
Q ss_pred ccHHHHHHHHhh------hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 289 LNIYVFNSLMNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 289 ~~~~~~~~ll~~------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
.+...+..+... ..++++.|.+.+++..... +.+..++..+...|...|++++|...|++...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 122222222111 1134555556655555443 33445555555666666666666666665554
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.6e-13 Score=134.20 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=193.5
Q ss_pred cchHHHHHHHHHHHHhcCCCCcc-cccHHHHHHHHhcCCChHHHHHHhhhC-CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
.|++..|+..+++..... |++ ......+++++...|+++.|+..++.. +++..++..+...+...++.++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 699999999888754433 444 234566788999999999999877664 2233566778888999999999999999
Q ss_pred HHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCc
Q 004922 246 ASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 246 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
++...+..| +...+..+..++...|++++|++.+++ +.+...+..+..+ ..|++++|.+.|+.+.+.. |
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 988765445 567778888899999999999999987 2445555555554 4478999999999988764 4
Q ss_pred ChhhH---HHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 323 DMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (723)
Q Consensus 323 ~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 399 (723)
+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++.+...+. +..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 43222 22334444558899999999988873 3457778888888899999999999999998876544 777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004922 400 TWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~ 456 (723)
++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 88888888888888865 56888888776 343221 223344555555554433
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=4.9e-15 Score=147.63 Aligned_cols=327 Identities=9% Similarity=0.070 Sum_probs=132.9
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
|+.+.|.+++++.+.+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl----- 84 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL----- 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH-----
Confidence 4455555555555332 35555555555555555555555331 33445555555555555555544433
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~ 364 (723)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..
T Consensus 85 ----------------------------~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~~ 123 (449)
T 1b89_A 85 ----------------------------QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPNNA 123 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred ----------------------------HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCcHH
Confidence 333332 4567788899999999999999887763 26777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
+|..+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 188 (449)
T ss_dssp -------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHH
Confidence 9999999999999999999999976 46999999999999999999999988 37899999999999
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
..|+++.|......+. +.|+. ...++..
T Consensus 189 ~~~ef~lA~~~~l~L~--------------------------------------------------~~ad~--l~~lv~~ 216 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIV--------------------------------------------------VHADE--LEELINY 216 (449)
T ss_dssp HTTCHHHHHHTTTTTT--------------------------------------------------TCHHH--HHHHHHH
T ss_pred HcCcHHHHHHHHHHHH--------------------------------------------------hCHhh--HHHHHHH
Confidence 9999999954432211 12332 2245555
Q ss_pred Hh--hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 004922 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS--GNVEGALQILKIMREDGMSP------DVVAYTTAIKVCV 594 (723)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~ 594 (723)
|. +..+++..+++...... +-....|+-|.-.|++- +++.+.++.|..- .++.| +...|..+...|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 54 35667777776666433 33445566555555543 3444444444321 12222 2345666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEW 666 (723)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 666 (723)
..++++.|.. .|.+. .|+..--..+.....+-.+.+-.-+|+..+= +..|. .++-|+.++
T Consensus 294 ~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-----~~~p~--~l~~ll~~l 353 (449)
T 1b89_A 294 KYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL-----EFKPL--LLNDLLMVL 353 (449)
T ss_dssp HTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH-----HHCGG--GHHHHHHHH
T ss_pred hhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH-----hcCHH--HHHHHHHHH
Confidence 7777776654 34432 2222222233333344565554434333321 22333 355666655
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.7e-12 Score=121.13 Aligned_cols=201 Identities=11% Similarity=-0.033 Sum_probs=143.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
+|++..++..+...+.+.|++++|...|+...+..+ .+...+..+...+.+.|++++|+..|++..+.. |
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P------- 70 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--P------- 70 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------
Confidence 366677888888899999999999999999887432 367888888899999999999999998887652 2
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-----------CChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
.+...+..+..++... |++++|...|++..+. .+.+...
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 2233344444444444 8888999988888873 2334667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+..+...+...|++++|+..|++.++.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888888889999999999999988776 578888888888999999999999998888764 4467778888888888
Q ss_pred hCCHHHHHHHHHHhh
Q 004922 446 ACQFDRAFRLFRSWT 460 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~ 460 (723)
.|++++|...|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 899999888887654
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=5.9e-13 Score=134.60 Aligned_cols=201 Identities=10% Similarity=-0.024 Sum_probs=117.9
Q ss_pred ccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc-cchHHHHHHHHh
Q 004922 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLN 140 (723)
Q Consensus 62 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~ 140 (723)
++..+|+. ...|..+...+.+.|++++|+..+++++.. +|.....+... ...+...|+ +++|+..|++++
T Consensus 89 ai~~~p~~-~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~------g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 89 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFR------RVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhCChhh-HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHH------HHHHHHcccCHHHHHHHHHHHH
Confidence 34555666 777888888888888888888888888888 66655443333 333677786 888888888888
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (723)
+ +.|+.. ..+..+..+ +...|++++|+..|++++... |.+...|..++.++...|++++|+..++++
T Consensus 160 ~--l~P~~~---~a~~~~g~~---~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 160 E--EQPKNY---QVWHHRRVL---VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp H--HCTTCH---HHHHHHHHH---HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HCCCCH---HHHHHHHHH---HHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7 455432 233333333 333688888888888887755 555555555555555555555555554442
Q ss_pred -CCCcchHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 004922 218 -PRADILFCNFVREFGK-KRDLVSA-----LRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDL 282 (723)
Q Consensus 218 -~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 282 (723)
|.+..+|+.+...+.. .|..++| +..|++..+... -+...|+.+..++...| ++++|++.+.++
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4444555555555555 3333444 244444444211 13444555555554444 344444444443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-11 Score=118.94 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=165.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cc----HHHHH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LN----IYVFN 295 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~ 295 (723)
..+..+...+...|++++|...|+++.+.. .+..++..+...|...|++++|+..|++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777788888888887777665 56677777777788888888888888777654211 11 23444
Q ss_pred HHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHH
Q 004922 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (723)
Q Consensus 296 ~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~ 373 (723)
.+..+ ..++++.|.+.|++..... |+. ..+...|++++|...++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 44443 3367788888888777643 342 3456677888999988888762 223455788888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
...|++++|...|++....... +..+|..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999999999999998876543 67888888899999999999999999888764 446778888888999999999999
Q ss_pred HHHHHhhhhh
Q 004922 454 RLFRSWTLSK 463 (723)
Q Consensus 454 ~l~~~~~~~~ 463 (723)
..++......
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9998877653
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=4.1e-12 Score=118.45 Aligned_cols=197 Identities=11% Similarity=-0.063 Sum_probs=129.2
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
|++...+..++..+.+.|++++|...++.. |.+..++..+...+.+.|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 334445555666666666666666665542 66678888899999999999999999999887532 3677888888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 004922 264 DVCGIC-----------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (723)
Q Consensus 264 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 332 (723)
.++... |++++|+..|++..+. . +-+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------------------~-P~~~~~~~~lg~ 126 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------------------------------N-PRYAPLHLQRGL 126 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------------------------------C-TTCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------------------------------C-cccHHHHHHHHH
Confidence 888877 6666666666655543 2 334566677777
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004922 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (723)
Q Consensus 333 ~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 412 (723)
++...|++++|...|++...+ . .+...+..+..+|...|++++|...|++..+..+. +...+..+...+.+.|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALAL-----E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--
T ss_pred HHHHcCChHHHHHHHHHHHhc-----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcc
Confidence 788888888888888887763 1 45667777777888888888888888888776433 5667777777888888
Q ss_pred CHHHHHHHHHHHHH
Q 004922 413 LVEQAMHLFEEMLQ 426 (723)
Q Consensus 413 ~~~~a~~~~~~~~~ 426 (723)
++++|...+++...
T Consensus 200 ~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 200 KAEEAARAAALEHH 213 (217)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHhh
Confidence 88888877776543
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-11 Score=118.28 Aligned_cols=193 Identities=10% Similarity=0.014 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 294 (723)
..++..++..|...|++++|...|+...+.... ++ ..++..+...|...|++++|...|+++.+.. |+...+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~ 115 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADIL 115 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHHH
Confidence 356677777788888888888888877653211 11 5678888888888888888888888888753 333222
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH
Q 004922 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374 (723)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~ 374 (723)
...++++.|.+.++.+.... +.+...+..+...+...|++++|...|+++... .+.+...|..+...|.
T Consensus 116 -----~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 116 -----TKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALA 184 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred -----HHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHH
Confidence 22356788888888887754 345677888899999999999999999999874 2346778999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..|++++|...+++..+.... +..+|..+...+.+.|++++|...+++..+.
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999887533 6788999999999999999999999988765
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=3.5e-12 Score=124.19 Aligned_cols=117 Identities=12% Similarity=-0.046 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHhcCC--CCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 241 (723)
.|++++|+..|+++++... .|.....+..++..+...|++++|...++.+ |.+..++..++..|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999987632 2344556666666777777777776666553 555566666666777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..|+++.+... .+..++..+...|...|++++|...|+++.+.
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766665421 24556666666666677777777766666654
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=3e-11 Score=117.32 Aligned_cols=223 Identities=14% Similarity=0.032 Sum_probs=156.7
Q ss_pred HHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC---CCCcch----HHHHHHHHHhcC
Q 004922 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADIL----FCNFVREFGKKR 235 (723)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~----~~~l~~~~~~~~ 235 (723)
..+...|++++|+..|+++++.. |.+...+..++..+...|++++|+..++.+ +.+... +..+...|...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 34455899999999999998865 777778888888999999999998887764 333333 778888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-hh-hcCChHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV-NAHDLKFTLEVYK 313 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~-~~~~~~~a~~~~~ 313 (723)
++++|+..|+...+... .+..++..+...|...|++++|+..|++..+.. +.+...|..+- .. ..++++.|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887532 356788888888899999999999998887762 22334444333 32 2357777777777
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCC---hHHHHHHHHHHHhhhhcCCcccc------HHHHHHHHHHHHccCCHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~~~g~~~~~------~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
+..+.. +.+...+..+...+...|+ +++|...|+++....... |+ ...|..+...|...|++++|..
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777653 3345566666666766676 666777777776542211 22 1356666666677777777777
Q ss_pred HHHHHHHCC
Q 004922 385 VKEDMLSAG 393 (723)
Q Consensus 385 ~~~~m~~~~ 393 (723)
.|++..+..
T Consensus 243 ~~~~al~~~ 251 (272)
T 3u4t_A 243 AWKNILALD 251 (272)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777776653
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.2e-11 Score=118.67 Aligned_cols=204 Identities=12% Similarity=-0.024 Sum_probs=144.3
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 144 (723)
.+|......+..++..+...|++++|+..+++++.. .|... ..+..+...+...|++++|++.|+++.+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSA------DAHAALAVVFQTEMEPKLADEEYRKALAS-- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 345555788899999999999999999999999988 44432 23344555688999999999999999985
Q ss_pred CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC
Q 004922 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA 220 (723)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 220 (723)
.|+.. ..+..+.. .+...|++++|+..++++...+..|.....+..++..+...|++++|...+... |.+
T Consensus 101 ~~~~~---~~~~~la~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 101 DSRNA---RVLNNYGG---FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp CTTCH---HHHHHHHH---HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CcCcH---HHHHHHHH---HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 34321 23333333 344489999999999999873344656666666777777777777777766553 555
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..++..++..|...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666677777777777777777777766532 235556666667777777777777777776654
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=5.2e-12 Score=122.92 Aligned_cols=155 Identities=7% Similarity=-0.164 Sum_probs=119.9
Q ss_pred hhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
+...|++++|+..|+++.+.....+ ......+..+. ..+...|++++|+..|++++... |.....+..++..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD-DERAQLLYERG---VLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH-HHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC-chhHHHHHHHH---HHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 4678999999999999998532111 11122333333 34445899999999999999866 778889999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004922 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (723)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (723)
..|++++|...++.+ |.+..++..++..|...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998874 7778999999999999999999999999998853 4433444444455667888888888
Q ss_pred HHHHHhC
Q 004922 279 YEDLRSQ 285 (723)
Q Consensus 279 ~~~m~~~ 285 (723)
+++....
T Consensus 167 ~~~~~~~ 173 (275)
T 1xnf_A 167 LKQHFEK 173 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8776654
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=4.4e-10 Score=117.38 Aligned_cols=373 Identities=12% Similarity=0.007 Sum_probs=169.8
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCCh---HHHHHHhhhC-CCCcchHHHHHHHHHhcC-----C
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIV-PRADILFCNFVREFGKKR-----D 236 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~-~~~~~~~~~l~~~~~~~~-----~ 236 (723)
.+.|++++|+.+|++..+.+ +...+..++..+...|++ ++|...|++. ..++.++..|...+...+ +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 34799999999999988755 334455566666666666 6777666654 224455666666444444 5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCcccHHHHHHHHhhhcCC----hHHHH
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD----LKFTL 309 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----~~~a~ 309 (723)
+++|+..|++..+.|. + ..+..|...|...+... ++.+.+......|. +.....-..+....+. .+.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 6677777777666443 1 25555555555544332 23333333333332 2222222222222222 22222
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHcc----CCHHHH
Q 004922 310 EVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQMA 382 (723)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~----g~~~~a 382 (723)
.++.... ..++..+..|...|...| +.++|.+.|++... .| .++...+..+...|... +++++|
T Consensus 166 ~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 166 RICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 2222222 122224444555555555 55555555555443 22 22333333444444333 455555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 383 LKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
...|++.. .| +...+..+... + ...+++++|..+|++..+.| +...+..+-..|. .|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~----------- 297 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK----------- 297 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS-----------
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC-----------
Confidence 55555544 21 33334444443 2 23455555555555555443 3344444444443 230
Q ss_pred hhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHH
Q 004922 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m 539 (723)
|+ .++.++|...|...
T Consensus 298 --------------------------------------------------g~--------------~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 298 --------------------------------------------------WV--------------PADAKAAEAHFEKA 313 (452)
T ss_dssp --------------------------------------------------SS--------------CCCHHHHHHHHHTT
T ss_pred --------------------------------------------------CC--------------CCCHHHHHHHHHHH
Confidence 00 01344444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004922 540 RTVGLSPNHISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKH 611 (723)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 611 (723)
. . -+...+..|...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++|..+|+...+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3 1 234445555555554 3488889999988887663 3344455555553 4578888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004922 612 YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (723)
Q Consensus 612 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~ 649 (723)
.|.. +... .+......-..++..++..+.++..+
T Consensus 387 ~g~~-~a~~---~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 387 QDTP-EAND---LATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCCH-HHHH---HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHH---HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6632 2221 22222334444555555555555443
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=2.2e-10 Score=119.65 Aligned_cols=347 Identities=9% Similarity=-0.079 Sum_probs=223.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCcc---chHHHHHHHHhhcCCCcccccc
Q 004922 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
..++..+.+.|++++|+.+|+++.+.+ ++.... .+...+...|++ ++|+.+|+++.+. .|.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~---------~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~---- 70 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSEAQV---------GLADIQVGTRDPAQIKQAEATYRAAADT--SPR---- 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGG---------TCC----------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHH---------HHHHHHHccCCCCCHHHHHHHHHHHHhC--CHH----
Confidence 357788888999999999999998875 333221 222235667888 8999999999864 332
Q ss_pred cchhhhhHHHHHHhhc--cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHH---HHHhhhC--CCCcchH
Q 004922 152 GSGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA---IRYACIV--PRADILF 224 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~--~~~~~~~ 224 (723)
....+..++..... .+++++|+..|++..+.+ +...+..++..|...+....+ .+.+... +.+..+.
T Consensus 71 --A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~ 144 (452)
T 3e4b_A 71 --AQARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAG 144 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHH
T ss_pred --HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHH
Confidence 22222221222110 148899999999998855 345788899988877665443 3333332 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..|...|...+.++++......+.+.-...+...+..+...|...| +.++|+..|+...+.|.. +...+..+-..+
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 8899999999866555554333322211233348889999999999 999999999999998743 333222222222
Q ss_pred ------cCChHHHHHHHHHHHHcCCCcChhhHHHHHHH-H--HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH
Q 004922 302 ------AHDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (723)
Q Consensus 302 ------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~ 372 (723)
.+++++|.+.|+... . -++..+..|... + ...+++++|.+.|++... .| +...+..|...
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g----~~~A~~~Lg~~ 292 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---AD----QPRAELLLGKL 292 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---TT----CHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---CC----CHHHHHHHHHH
Confidence 158899999999987 3 466667777766 4 468999999999999876 22 66677777777
Q ss_pred HHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 373 FADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 373 ~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
|. .| ++++|...|++.. .| +...+..|...|.. ..++++|..+|++..+.|. ......+-..|
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y 364 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLF 364 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHH
Confidence 77 55 9999999999887 33 66778888877776 3499999999999988763 33455555555
Q ss_pred HH----hCCHHHHHHHHHHhhhhh
Q 004922 444 VE----ACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 444 ~~----~g~~~~a~~l~~~~~~~~ 463 (723)
.. ..+..+|...|+.....+
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCC
Confidence 53 358899999998876544
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=1.3e-10 Score=111.28 Aligned_cols=208 Identities=14% Similarity=0.031 Sum_probs=132.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|.+.|+++... .+.+...+..+...|...|++++|.+.++++.+.... +...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 445566666677777777777777776652 1234556666666777777777777777776655332 5566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
+...|...|++++|..+++++.+.+..| +...+..+..++.+.|++++|...+++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------------- 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--------------------- 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Confidence 6666777777777777777666522233 344555566666666666666666654432
Q ss_pred hhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004922 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (723)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 562 (723)
.. +.+...+..+...|...|
T Consensus 170 -----------------------------------------------------------~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 170 -----------------------------------------------------------LN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp -----------------------------------------------------------HC-SCCHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------cC-cccHHHHHHHHHHHHHcC
Confidence 11 123556667777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (723)
++++|..+++++.+.. ..+...+..+...+...|+.++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 8888888888777642 235666777777777788888888888877763 3544333
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.4e-10 Score=108.80 Aligned_cols=202 Identities=9% Similarity=-0.056 Sum_probs=118.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++++...... +..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHH
Confidence 3445556666666667777777766666552 1234556666666666666666666666666654322 455666
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhh
Q 004922 403 SLINACANA-GLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (723)
Q Consensus 403 ~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (723)
.+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------ 142 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------------------ 142 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 666666666 666666666666665222222 345555556666666666666655544321
Q ss_pred hhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
. +.+...+..+...+.+
T Consensus 143 --------------------------------------------------------------~-~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 143 --------------------------------------------------------------Q-PQFPPAFKELARTKML 159 (225)
T ss_dssp --------------------------------------------------------------S-TTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------C-CCCchHHHHHHHHHHH
Confidence 0 1134455566666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777777777777666542113455566666666667777777777766654
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=4.2e-10 Score=109.22 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=164.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
+..++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ .++....-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 3456666777777777777777777777762 345667777777777 777777877777777765 22222222
Q ss_pred HHHhhh----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 296 SLMNVN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 296 ~ll~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
..+... .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++.... .+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~ 150 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCT 150 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHH
Confidence 223333 567777888887777754 66777778888888 88899999988888762 2556677
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 368 TIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 368 ~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777777 888999999998888764 56777788888888 889999999998888764 36677777
Q ss_pred HHHHHH----hCCHHHHHHHHHHhhhhhc
Q 004922 440 LQACVE----ACQFDRAFRLFRSWTLSKT 464 (723)
Q Consensus 440 l~~~~~----~g~~~~a~~l~~~~~~~~~ 464 (723)
..+|.+ .+++++|...|++....+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 788887 8888999998888776553
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.2e-10 Score=109.21 Aligned_cols=201 Identities=9% Similarity=-0.038 Sum_probs=127.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
..++..++..+...|++++|...|+.+.+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 4566777777888888888888888877643 2356677777788888888888888877766532
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~ 379 (723)
+.+..++..+...+... |++++|...++.+.. .+..+.+...+..+...+...|++
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---DPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---STTCSCHHHHHHHHHHHHHHTTCH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---CcCCcchHHHHHHHHHHHHHcCCH
Confidence 22344555566666666 666666666666654 111222345566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
++|...++++.+.... +...+..+...+.+.|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+
T Consensus 130 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6666666666654322 455666666666666777777766666665431145555666666666666666666666665
Q ss_pred h
Q 004922 460 T 460 (723)
Q Consensus 460 ~ 460 (723)
.
T Consensus 209 ~ 209 (225)
T 2vq2_A 209 Q 209 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=1.8e-10 Score=111.82 Aligned_cols=217 Identities=16% Similarity=0.051 Sum_probs=156.9
Q ss_pred cHHHHHHHHhcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 004922 193 EEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (723)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (723)
.+..++..+...+++++|.+.|+.. +.+..++..+...|.. .+++++|+..|++..+.+ +..++..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344444444455555555544442 3344566667777777 788888888888877753 667777777777
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHh--hh----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 004922 267 GI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (723)
Q Consensus 267 ~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 336 (723)
.. .+++++|+..|++..+.+ +...+..+-. .. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 77 788888888888877765 3333333322 33 567888888888887765 56667777788887
Q ss_pred ----cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004922 337 ----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (723)
Q Consensus 337 ----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (723)
.+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 89999999999988762 255677888888888 899999999999998875 366778888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcC
Q 004922 409 AN----AGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 409 ~~----~g~~~~a~~~~~~~~~~~ 428 (723)
.+ .+++++|...|++..+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 899999999999888765
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.8e-11 Score=126.62 Aligned_cols=319 Identities=14% Similarity=0.024 Sum_probs=211.7
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC-ccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLE 148 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~ 148 (723)
+...+...+..+...|++++|+..+++++... |..... ....+..+...+...|++++|+..++++.+.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT--LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 35667788899999999999999999999984 332211 1334456677788999999999999987653100 111
Q ss_pred ccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHH
Q 004922 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (723)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (723)
. .....+......+...|++++|+..+++++... +.. ++.. ....++..+.
T Consensus 84 ~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------------~~~~----------~~~~~~~~l~ 134 (406)
T 3sf4_A 84 L---GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL--------------NDKV----------GEARALYNLG 134 (406)
T ss_dssp H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------TCHH----------HHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------cccc----------chHHHHHHHH
Confidence 1 122233333334445789999998888776532 100 0000 0024567778
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 229 REFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 229 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
..|...|+ +++|...+++..+. +..+ ...++..+...|...|++++|...|++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888 88888888776442 1112 24568888888999999999999988766
Q ss_pred hCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-
Q 004922 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL- 361 (723)
Q Consensus 284 ~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~- 361 (723)
+. ... .+. .....++..+...|...|++++|...+++...........+
T Consensus 215 ~~--------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 215 LI--------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HH--------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HH--------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 42 111 010 11134677788889999999999999998876433221111
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-P 431 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 431 (723)
...++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+. +.. .
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 1457888889999999999999999988753111 12 457788889999999999999999887653 211 1
Q ss_pred CHHHHHHHHHHHHHhCCHH
Q 004922 432 NSQCCNILLQACVEACQFD 450 (723)
Q Consensus 432 ~~~~~~~ll~~~~~~g~~~ 450 (723)
...++..+...+...|+..
T Consensus 346 ~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHhhHhH
Confidence 2345566666666666553
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=5.4e-11 Score=120.22 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=123.5
Q ss_pred CCcchHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 219 RADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
.+..+|+.+...+...|+ +++|+..|+++.+... .+..+|+.+..++...|++++|+..|+++++... -+...|..+
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~l 206 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHR 206 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHH
Confidence 334444455555555553 5555555555554321 2344555555555555555555555555554321 122222222
Q ss_pred Hhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCChHHH-----HHHHHHHHhhhhcCCccccHHHHHHH
Q 004922 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTI 369 (723)
Q Consensus 298 l~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~g~~~~~~~~~~~l 369 (723)
-.+ ..|++++|+..|+++++.. +-+...|+.+..++.. .|..++| ...|++...+ .+-+...|+.+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l 280 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHH
Confidence 222 2245555555555555543 3467778888888888 5555777 4777777763 23355678888
Q ss_pred HHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCC-CHHHH
Q 004922 370 VKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEP-NSQCC 436 (723)
Q Consensus 370 l~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~~-~~~~~ 436 (723)
...+...| ++++|++.+.++ +.. ..+...+..+...|.+.| ..++|+.+++++ .+. .| ....|
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w 356 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYW 356 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 88888877 688888888887 332 335677888888888764 258899999888 544 34 33445
Q ss_pred HHHHHHH
Q 004922 437 NILLQAC 443 (723)
Q Consensus 437 ~~ll~~~ 443 (723)
..+...+
T Consensus 357 ~~~~~~l 363 (382)
T 2h6f_A 357 RYIGRSL 363 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=8.1e-09 Score=111.50 Aligned_cols=460 Identities=7% Similarity=-0.021 Sum_probs=266.0
Q ss_pred chhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc---cchHHH
Q 004922 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVG 134 (723)
Q Consensus 58 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~ 134 (723)
.+.+.+..+|.+ ...|..+++.+.+.|.++.+..+|++++.. .|..+..+... +..-.+.|. ++.+.+
T Consensus 54 ~lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Y------i~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 54 KLNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMR------LSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHH------HHHHHhhCCcchHHHHHH
Confidence 477779999998 999999999999999999999999999999 56554443332 222446677 999999
Q ss_pred HHHHHhhcCC-CcccccccchhhhhHHHHHHhhcc-----chHHHHHHHHHHHHh-cCC-CCcccccHHHHHHHHhcCCC
Q 004922 135 VLKKLNELGV-APLELFDGSGFKLLKNECQRLLDS-----GEVEMFVGLMEVLEE-FRL-PVKELDEEFRIVQLCVNKPD 206 (723)
Q Consensus 135 ~~~~~~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~-----g~~~~A~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~ 206 (723)
+|++.+.... .|+. .++..++.-....... +..+...++|+.++. .|. .+.....|...+........
T Consensus 125 lfeRal~~~~~~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 125 VLARCLSKELGNNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHTCSSSCCCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCCCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999998531 1322 2444444432221110 112344567776553 243 34443444444333222110
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-N-MYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
. ..+...++++.+..+|+.+.. ++. + ..+|......-...+. ..+..++.+.
T Consensus 201 ~---------------------~~~eeq~~~~~~R~iy~raL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-- 254 (679)
T 4e6h_A 201 V---------------------NKFEEQQRVQYIRKLYKTLLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-- 254 (679)
T ss_dssp C---------------------SHHHHHHHHHHHHHHHHHHTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--
T ss_pred c---------------------CcHHHHhHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--
Confidence 0 001123446777777777764 211 1 1223222111100010 0011111110
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHc--CC----C-----------c-----C---hhhHHHHHHHHHHcC-
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL--GV----M-----------A-----D---MASYNILLKACCLAG- 338 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~--g~----~-----------~-----~---~~~~~~ll~~~~~~~- 338 (723)
..++..|...+.++... ++ + | + ...|...+..--..+
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 01111222222221110 00 0 0 0 112222322211111
Q ss_pred ------ChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 339 ------NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL-KVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 339 ------~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
..+.+..+|++.... .+.+...|...+..+...|+.++|. .+|+...... +.+...|...+....+.
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 122345567766653 3446667777777777788888886 8888887643 33566677777888888
Q ss_pred CCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHhhhh-hcccccC
Q 004922 412 GLVEQAMHLFEEMLQAG---------CEPN------------SQCCNILLQACVEACQFDRAFRLFRSWTLS-KTQVALG 469 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~-~~~~~~~ 469 (723)
|+++.|..+|+.+.+.. ..|+ ..+|...+....+.|+.+.|..+|...... ..
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----- 466 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----- 466 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Confidence 88888888888887631 0132 235777777777888899999999887653 11
Q ss_pred CcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCCH
Q 004922 470 EDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNH 548 (723)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~a~~l~~~m~~~~~~p~~ 548 (723)
..+......+.+...+ ++.+.|..+|+...+. .+-+.
T Consensus 467 -----------------------------------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~ 504 (679)
T 4e6h_A 467 -----------------------------------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDG 504 (679)
T ss_dssp -----------------------------------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCH
T ss_pred -----------------------------------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCch
Confidence 1234444445555444 3578888998888876 33455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
..+...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 666777777778889999999999888753222 2457777887777889999999999998874 466555555555
Q ss_pred HH
Q 004922 627 AR 628 (723)
Q Consensus 627 ~~ 628 (723)
-|
T Consensus 583 ry 584 (679)
T 4e6h_A 583 KY 584 (679)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=1e-10 Score=111.30 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=122.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|+..|+++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3567777888888889999999888888743 2367788888888888888888888888776542
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 88 --------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHH
T ss_pred --------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHH
Confidence 224455556666666777777777777766653 2234556666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+|...++++...... +...+..+...+.+.|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.
T Consensus 143 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776655322 55666667777777777777777777766653 3456666677777777777777777777665
Q ss_pred h
Q 004922 461 L 461 (723)
Q Consensus 461 ~ 461 (723)
.
T Consensus 221 ~ 221 (243)
T 2q7f_A 221 D 221 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=8.2e-11 Score=114.20 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=150.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH--HHHHHHHh-
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMN- 299 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~- 299 (723)
.+......+...|++++|+..|+.+.+... .+...+..+...|...|++++|+..|++..+.+..++. ..|..+-.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344445555555566666666655554321 13335555555555556666666666555553211221 11222222
Q ss_pred -hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 300 -VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 300 -~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
...|+++.|.+.|++..+.. +.+...+..+...|...|++++|...|++.... .+.+...|..+...+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHHH
Confidence 22355566666666655543 345678888999999999999999999988762 23355567777624444559
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHhCC
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAG-CEPN------SQCCNILLQACVEACQ 448 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~g~ 448 (723)
+++|...|+++.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+.|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999886433 56778888888888888 778888888877641 1233 2567788889999999
Q ss_pred HHHHHHHHHHhhhhh
Q 004922 449 FDRAFRLFRSWTLSK 463 (723)
Q Consensus 449 ~~~a~~l~~~~~~~~ 463 (723)
+++|.+.|++.....
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887653
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=5e-11 Score=119.65 Aligned_cols=296 Identities=15% Similarity=0.036 Sum_probs=187.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC-cccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA-PLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 149 (723)
...+...+..+...|++++|+..+++++... |.... .....+..+...+...|++++|++.++++.+.... ++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 3455667888899999999999999999984 33221 11334456677788999999999999987753100 1111
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.....+......+...|++++|+..+++.+...... ++.. ....++..+..
T Consensus 81 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~----------~~~~~~~~l~~ 131 (338)
T 3ro2_A 81 ---GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------------NDKV----------GEARALYNLGN 131 (338)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----------------cCch----------HHHHHHHHHHH
Confidence 112223333333445788888888888765432100 0000 00135667777
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 230 ~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.|...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888 88888888775432 1111 244678888888899999999998887654
Q ss_pred CCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc-cH
Q 004922 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (723)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~-~~ 363 (723)
. ..... .......++..+...+...|++++|...+++...........+ ..
T Consensus 212 ~--------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 212 I--------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp H--------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 2 11100 0011233667778888889999999999888876432211111 14
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.++..+...+...|++++|...+++...... .....++..+...|.+.|++++|...+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4667777788888888888888877754311 001335666777777777777777777776653
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.7e-11 Score=127.19 Aligned_cols=295 Identities=14% Similarity=0.030 Sum_probs=188.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCC-Ccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV-APLEL 149 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~ 149 (723)
...+..++..+...|++++|+..+++++... |.... ....++..+...+...|++++|+..|+++++... ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 5566678889999999999999999999984 33221 1123445667778899999999999999876310 01111
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
.....+......+...|++++|+..+++++...... ++. +....++..+..
T Consensus 124 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 124 ---GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGN 174 (411)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHH
Confidence 122233333334445899999999988876532000 000 011245666777
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004922 230 EFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (723)
Q Consensus 230 ~~~~~~~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 287 (723)
.|...|+ +++|+..+++..+. +..+ ...++..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7777787 78888777765432 1111 245788888889999999999999988876511
Q ss_pred c-ccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHH
Q 004922 288 T-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFT 365 (723)
Q Consensus 288 ~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~ 365 (723)
. .+. .....++..+...|...|++++|...|++........ .......+
T Consensus 255 ~~~~~-----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 255 EFGDR-----------------------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHTCH-----------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCc-----------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 000 0113455566677777777777777777766643221 11112457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+...|...|++++|...+++...... .....++..+...|.+.|++++|...+++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77777777777777777777777654311 111346677778888888888888888887765
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=5.3e-11 Score=113.26 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=113.5
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+..++..++..|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------- 121 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----------- 121 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------
Confidence 3445667777888888888888888888887653 2367778888888888888888888888776542
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g 377 (723)
+.+...+..+...+...|++++|...++++... .+.+...+..+...+...|
T Consensus 122 -----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 122 -----------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp -----------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHcC
Confidence 223444555666666666666666666666552 1234556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++++|...++++...... +..++..+...|.+.|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 677777666666654322 4556666666677777777777777766654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=2.9e-11 Score=125.41 Aligned_cols=274 Identities=15% Similarity=0.034 Sum_probs=168.7
Q ss_pred HHHHhhccchHHHHHHHHHHHHhcCCCCccc----ccHHHHHHHHhcCCChHHHHHHhhhC----------CCCcchHHH
Q 004922 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACIV----------PRADILFCN 226 (723)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~ 226 (723)
....+...|++++|+..|+++++.. |.+. ..+..++..+...|++++|...++.. +....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3334455899999999999988864 4432 23444555555555555555544332 111133444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCcccH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGD----------YMKSRAIYEDLRSQNVTLNI 291 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~ 291 (723)
+...|...|++++|...|++..+.. -.+ ...++..+...|...|+ +++|...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 4455555555555555544433210 001 12234444444444444 1111111
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHH
Q 004922 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL----GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFT 365 (723)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~ 365 (723)
++.|.+.+.+.... +. .....++..+...|...|++++|...+++........ ........
T Consensus 199 -------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 199 -------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44444444443221 11 1224577788899999999999999999988753221 01111237
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EPNSQC 435 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 435 (723)
+..+...|...|++++|...+++....... ....++..+...|...|++++|...+++..+. +. .....+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888999999999999999999988754211 11467888999999999999999999988753 11 112346
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 436 ~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+..+...|.+.|++++|...+++....
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 778889999999999999999987654
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=1.3e-07 Score=102.03 Aligned_cols=443 Identities=11% Similarity=0.070 Sum_probs=286.0
Q ss_pred HHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC---HHHHHHHHH
Q 004922 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYD 245 (723)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~ 245 (723)
+.+..|++.+..+ |.+...|..++..+.+.+.++.+..+|+. +|.....|...+..-.+.++ ++.+..+|+
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444556666655 78889999999999988999988887766 58888888888888888888 999999999
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHhC-CC-ccc-HHHHHHHHhhhc-----------
Q 004922 246 ASKKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRSQ-NV-TLN-IYVFNSLMNVNA----------- 302 (723)
Q Consensus 246 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~m~~~-g~-~~~-~~~~~~ll~~~~----------- 302 (723)
+...... +|++..|..-+....+.++. +.+.++|+..... |. .++ ...|...+....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9987541 37888888887766555543 3445777776553 66 554 567877776421
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-------------cCChHHHHHHHHHHHhhhhcCC---cc------
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK------ 360 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~~~~~~~~g~---~~------ 360 (723)
++.+.+.++|++........-..+|......-.. ..+++.|...+.++..... +. ++
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccc
Confidence 2356678888888753111112233222111111 1233445555555443221 10 00
Q ss_pred -----c-----c---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 004922 361 -----L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-H 419 (723)
Q Consensus 361 -----~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~ 419 (723)
| + ...|...+.---..+ ..+.+..+|++.+..-+. +...|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 134555544332222 134466788888876433 7788888888888899999997 9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCC
Q 004922 420 LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499 (723)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (723)
+|++.... ++.+...|-..+....+.|+++.|.++|+.+....... ......
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~--------------- 417 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME--------------- 417 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH---------------
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh---------------
Confidence 99999875 35577777788888899999999999999887532100 000000
Q ss_pred CCccccccccCCCc------------CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcC-C
Q 004922 500 SHYSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-G-LSPNHISWTILIDACGGS-G 562 (723)
Q Consensus 500 ~~~~~~~~~~~~~p------------~~~~~~~ll~~~~--~~~~~a~~l~~~m~~~-~-~~p~~~~~~~li~~~~~~-g 562 (723)
-.| ....|...+.... ++.+.|..+|....+. + ..+...+..+.+. .+. +
T Consensus 418 -----------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~ 484 (679)
T 4e6h_A 418 -----------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISK 484 (679)
T ss_dssp -----------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTS
T ss_pred -----------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCC
Confidence 002 1223444444433 3678999999999875 2 2233333333333 344 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQC 640 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~a 640 (723)
+.+.|..+|+...+. +.-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~-- 561 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR-- 561 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH--
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH--
Confidence 599999999999875 33356677888888888999999999999998753222 4578888888889999977754
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 641 LAVYQDMWKAGYKANDTYLKELIEEW 666 (723)
Q Consensus 641 ~~~~~~m~~~g~~p~~~~~~~li~~~ 666 (723)
++.++|.+.-... .....+++-|
T Consensus 562 -~v~~R~~~~~P~~--~~~~~f~~ry 584 (679)
T 4e6h_A 562 -TLEKRFFEKFPEV--NKLEEFTNKY 584 (679)
T ss_dssp -HHHHHHHHHSTTC--CHHHHHHHHT
T ss_pred -HHHHHHHHhCCCC--cHHHHHHHHh
Confidence 4888888766443 3344455544
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.31 E-value=9.5e-11 Score=121.22 Aligned_cols=273 Identities=15% Similarity=0.045 Sum_probs=170.9
Q ss_pred HHHhhccchHHHHHHHHHHHHhcCCCCcc----cccHHHHHHHHhcCCChHHHHHHhhhC-------C---CCcchHHHH
Q 004922 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADILFCNF 227 (723)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~---~~~~~~~~l 227 (723)
...+...|++++|+..|+++++.. |.+ ...+..++..+...|++++|...++.+ . ....++..+
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334455899999999999988764 433 234445555555566666555554442 1 012344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhCCCcc
Q 004922 228 VREFGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD-------------YMKSRAIYEDLRSQNVTL 289 (723)
Q Consensus 228 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~g~~~ 289 (723)
...|...|++++|...+++..+.... ++ ..++..+...|...|+ ++++...
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~----------- 162 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA----------- 162 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-----------
Confidence 55555555555555555544331100 01 2244444555555555 0111111
Q ss_pred cHHHHHHHHhhhcCChHHHHHHHHHHHH----cCCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc-ccH
Q 004922 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQK----LGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDV 363 (723)
Q Consensus 290 ~~~~~~~ll~~~~~~~~~a~~~~~~m~~----~g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~-~~~ 363 (723)
++.|.+.+.+... .+.. ....++..+...+...|++++|...+++........... ...
T Consensus 163 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 163 ---------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3444444443322 1111 124567788899999999999999999988754332111 123
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN----S 433 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~ 433 (723)
.++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+... ..+ .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 47888899999999999999999998753211 11 45788899999999999999999998875311 112 5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 434 QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.++..+...|.+.|++++|...+++....
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57788888999999999999999987654
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=6.1e-11 Score=124.79 Aligned_cols=216 Identities=13% Similarity=-0.019 Sum_probs=156.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCCh-HHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV-NLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
...+++++..++...... +.....+..++..+...|++ ++|++.++.+ |.+..++..+...|...|++++|..
T Consensus 81 ~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356677888888766544 56666777777777777777 7777766553 5556677777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGIC---------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (723)
.|++..+. .|+...+..+...|... |++++|+..|++..+.
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------------- 208 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---------------------------- 208 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----------------------------
Confidence 77777664 35556666777777666 6666666666555432
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHc--------CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004922 314 NMQKLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (723)
Q Consensus 314 ~m~~~g~~~~~~~~~~ll~~~~~~--------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 385 (723)
. +.+...|..+..+|... |++++|...|++...+... ...+...|..+..+|...|++++|...
T Consensus 209 -----~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 209 -----D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--ASSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp -----C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG--GGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2 34567777888888888 8999999999999873100 003677899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 386 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
|++..+..+. +...+..+...+...|++++|+..+.++
T Consensus 281 ~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 281 FSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999887544 6677888888888889888888765443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.9e-10 Score=117.99 Aligned_cols=93 Identities=8% Similarity=-0.017 Sum_probs=53.1
Q ss_pred hhccchHHHHHHHHHHHHhcCCC-CcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
+...|++++|+..|++.++.... ++.. ....++..+...|...|++++|...
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRI---------------------------EKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHH---------------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34479999999999988764211 1100 0113455566666666666666666
Q ss_pred HHHHHhcCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 244 YDASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 244 ~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+.+..+... .+ ...+++.+...|...|++++|...|++..+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 665543210 01 134566666667777777777777666553
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=4.3e-10 Score=115.28 Aligned_cols=302 Identities=10% Similarity=0.075 Sum_probs=188.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CC--CCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCcccHHH
Q 004922 231 FGKKRDLVSALRAYDASKKHL--SS--PNMYICRTIIDV--CGICGDYMKSR-----------AIYEDLRSQNVTLNIYV 293 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~m~~~g~~~~~~~ 293 (723)
+.+.+++++|..+++++.+.. .. ++...|..++.. ....++++.+. +.++.+.......+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788888888888876532 21 233334444432 11223333333 55555443211111100
Q ss_pred ------HHHHHhhhcCChHHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc--c
Q 004922 294 ------FNSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (723)
Q Consensus 294 ------~~~ll~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~--~ 360 (723)
+.+......|+++.|...|++.... +-.+ ...++..+...|...|++++|...+.+.......... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1222223447888888888887653 1111 3456777888888999999999999888775433211 1
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~ 430 (723)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12346788888888999999999988887653111 11 246788888889999999999988887762 22 3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccC
Q 004922 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (723)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (723)
....++..+...|.+.|++++|...+++.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------------------- 294 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------------------------- 294 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 345677888888888899999888887654321
Q ss_pred CCcCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 004922 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (723)
Q Consensus 511 ~~p~~~~~~~ll~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~ 586 (723)
... +-+.....+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 295 --------------------------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 295 --------------------------QKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp --------------------------HHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred --------------------------HHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 110 111112235567777778888 66666666655 22333 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
..+...|...|++++|.+.|++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777888889999999999888763
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=1.1e-10 Score=117.13 Aligned_cols=270 Identities=14% Similarity=0.037 Sum_probs=166.4
Q ss_pred hhccchHHHHHHHHHHHHhcCCCCcc----cccHHHHHHHHhcCCChHHHHHHhhhC-------CC---CcchHHHHHHH
Q 004922 165 LLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------PR---ADILFCNFVRE 230 (723)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~---~~~~~~~l~~~ 230 (723)
+...|++++|+..|+++++.. |.+ ...+..++..+...|++++|...++.. +. ...++..+...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344899999999999988764 433 233444555555555555555554432 00 11334444555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhCCCcccHH
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD-------------YMKSRAIYEDLRSQNVTLNIY 292 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~g~~~~~~ 292 (723)
|...|++++|...+++..+.... ++ ..++..+...|...|+ .+++...
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------------- 158 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------------- 158 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------------
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------------
Confidence 55555555555555443321100 11 2234444444444444 1111111
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQKL----GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTY 366 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~~ 366 (723)
++.|.+.+++.... +. ......+..+...+...|++++|...+++........ ........+
T Consensus 159 ------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 159 ------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 44444444433221 11 1124467778889999999999999999987643221 111123478
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 004922 367 STIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-EPNSQCC 436 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 436 (723)
..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+. +. .....++
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88899999999999999999988753111 11 457788899999999999999999988653 11 1124467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
..+...|.+.|++++|...+++....
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999987654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=8.5e-10 Score=99.74 Aligned_cols=168 Identities=16% Similarity=0.119 Sum_probs=112.8
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
++..+|..+...|...|++++|+..|++..+..+ -+..++..+..+|.+.|++++|...+.......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------------ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------------ 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3456788888899999999999999998887532 367788888888888999988888888776542
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~ 378 (723)
+.+...+..+...+...++++.|...+.+.... .+.+...+..+...|.+.|+
T Consensus 70 ----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 70 ----------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 223344444555566666666666666666552 22344556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+++|++.|++..+..+. +..+|..+..+|.+.|++++|+..|++..+.
T Consensus 123 ~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666666655432 5556666666666666666666666666553
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=1.6e-09 Score=107.09 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCH-------HHHHHHH
Q 004922 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-------VSALRAY 244 (723)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~ 244 (723)
++|+.+|++++... |.++..|...+..+...++ .+.+.|++ ++|..+|
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~-----------------------~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSK-----------------------LLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHH-----------------------HHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhch-----------------------hhhhccchhhcccchHHHHHHH
Confidence 67888888887754 5555555555544432100 01234554 7777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH-HHHHHHhhh--cCChHHHHHHHHHHHHcCC
Q 004922 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY-VFNSLMNVN--AHDLKFTLEVYKNMQKLGV 320 (723)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~--~~~~~~a~~~~~~m~~~g~ 320 (723)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .. .|..+.... .|+++.|..+|++..+..
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 77776212235567777777777777777777777777764 221 11 233332221 133444444444443322
Q ss_pred CcChhhHHHHHHHHH-HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--
Q 004922 321 MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTP-- 396 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p-- 396 (723)
+.+...|........ ..|++++|..+|+..... .+.+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 112222222211111 135555555555555442 12234445555555555555555555555555532 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 397 NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
....|..++..+.+.|+.+.|..+++++.+
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234455555555555555555555555544
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=9.9e-09 Score=101.36 Aligned_cols=214 Identities=8% Similarity=-0.015 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 004922 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA-------DAKWW-------QMALKVKEDMLS-AGVTPNTITWSSLI 405 (723)
Q Consensus 341 ~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~-~~~~p~~~~~~~li 405 (723)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++.+. ..+. +...|..++
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 5677777777663 2345556766666654 34664 788888888876 3322 556788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPN-SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
..+.+.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|++.....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 164 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------------------- 164 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--------------------
T ss_pred HHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------
Confidence 8888888888888888888774 342 33 67777777777888888888887765421
Q ss_pred hhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004922 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 560 (723)
+++...|....... .++.++|..+|+...+.. +-+...|..++..+.+
T Consensus 165 ----------------------------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 165 ----------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSH 215 (308)
T ss_dssp ----------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 11111221111111 134455555555554431 1234455555555555
Q ss_pred CCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 561 SGNVEGALQILKIMREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 561 ~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666666666555532 233 244555555555555666666655555554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=3.6e-10 Score=111.97 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=148.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NV 287 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~ 287 (723)
..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 367888899999999999999999998763 22234667889999999999999999999988764 11
Q ss_pred cc-cHHHHHHHHhh--hcCChHHHHHHHHHHHHcC-----C--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 288 TL-NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 288 ~~-~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g-----~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.| ....+..+... ..|+++.|.+.|++..+.. . +.....+..+...+...|++++|.+.|+++.......
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12 23334444333 2367777777777776542 1 1123456666777777788888888887777642211
Q ss_pred --Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 004922 358 --VLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHL 420 (723)
Q Consensus 358 --~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~li~~~~~~g~~~~a~~~ 420 (723)
...| ...++..+...|...|++++|...++++... ...+... .+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 0112 2345677777777778888888777777642 1111111 111222222333344444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+....... +.+..++..+..+|.+.|++++|...|++....
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 54444321 335567888999999999999999999987653
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=4.9e-10 Score=111.03 Aligned_cols=238 Identities=10% Similarity=-0.001 Sum_probs=145.5
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhc------CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
....+..++..+...|++++|+..+++++... ..|. ....+..+...+...|++++|+..++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD------VATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999998852 1233 23444566667899999999999999998741
Q ss_pred C---CcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhc------CCCCcccccHHHHHHHHhcCCChHHHHHHh
Q 004922 144 V---APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (723)
Q Consensus 144 ~---~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (723)
. .++.. .....+......+...|++++|+..++++++. +..+.....+..++..+...|++++|.+++
T Consensus 100 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 100 EKTLGKDHP---AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhCCCCh---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 01111 12233334444455689999999999998865 334556667778888888889998888887
Q ss_pred hhC---------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCC-------HHHHHHHHHHHHh
Q 004922 215 CIV---------PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHL-------SSPN-------MYICRTIIDVCGI 268 (723)
Q Consensus 215 ~~~---------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~ 268 (723)
+.. +.+ ..++..+...|...|++++|...|+++.+.. ..+. ...+..+...+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 663 111 2457778888888899999988888876521 1111 1112222222233
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh--cCChHHHHHHHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQK 317 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~ 317 (723)
.+.+.++...+....... +.+..++..+..++ .|++++|.+.|++..+
T Consensus 257 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444444443321 12233444444433 3677777777776654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=6.6e-10 Score=116.85 Aligned_cols=202 Identities=9% Similarity=-0.085 Sum_probs=158.6
Q ss_pred CCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
+.+..++..+...|...|++ ++|+..|++..+... .+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 166 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----------- 166 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------
Confidence 44556677777777778888 888888877776432 24667777777777777777777777776654
Q ss_pred HHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc---------CChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
.|+...+..+...+... |++++|...|++...+ .+.+...|.
T Consensus 167 ------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 217 (474)
T 4abn_A 167 ------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWY 217 (474)
T ss_dssp ------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 34455666666667676 9999999999999874 234577899
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004922 368 TIVKVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (723)
Q Consensus 368 ~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (723)
.+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+.
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 999999998 9999999999999986431 378899999999999999999999999998874 44677888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 438 ILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 438 ~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.+..++...|++++|.+.+.++..
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccC
Confidence 899999999999999887765443
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.20 E-value=5e-09 Score=94.62 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+..+|..+...|.+.|++++|++.|++..+.. +-+...+..+..+|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~ 49 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----------------------------------PNNVETLLKLGKTY 49 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 56788899999999999999999998877541 34677888899999
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 414 (723)
.+.|++++|...+...... .+.+...+..+...+...++++.+...+.+.....+. +...+..+...|.+.|++
T Consensus 50 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL-----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCc
Confidence 9999999999999998873 2345667888888899999999999999999887544 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+..
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999874 5578889999999999999999999999887644
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=3.2e-09 Score=108.28 Aligned_cols=292 Identities=13% Similarity=0.014 Sum_probs=171.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
..........+...|++++|...+++++......+.. .....+..+...+...|++++|...+++..+. .|....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 88 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHhcCc
Confidence 3455566677788999999999999998874322111 11233455666688899999999999998863 221110
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.......+......+...|++++|+..+++.+.......... .|....++..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 001112222333334458999999999988765321000000 00011344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHH-----HH--
Q 004922 231 FGKKRDLVSALRAYDASKKHLSS--P--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM-- 298 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~-----ll-- 298 (723)
+...|++++|...+++....... + ...++..+...+...|++++|...+++.......++ ...+.. ..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77777777777777776543221 1 234566677777777788777777777654311111 011111 11
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH-HHHHHHHHHHH
Q 004922 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (723)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~-~~~~~ll~~~~ 374 (723)
....|+++.|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 123467777777777665432111 12245567778888899999999888876543222112222 25556666777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004922 375 DAKWWQMALKVKEDMLS 391 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~ 391 (723)
..|+.++|...+++...
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 78888888887777654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1.7e-09 Score=110.49 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=122.0
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|+++........+. +....++..+...|...|+++.|...+.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDD--------------------------IEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCCh--------------------------HHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34788899999888877542111110 0012456667777777777777777776
Q ss_pred HHHhcCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcC
Q 004922 246 ASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (723)
Q Consensus 246 ~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g 319 (723)
+..+... .+ ...+++.+...|...|++++|.+.|++..+. .... +
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------------------~~~~---~ 216 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL--------------------------AMDI---Q 216 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HHHT---T
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------------------------HHHc---C
Confidence 6554210 11 2446777777777888888888877776542 0000 0
Q ss_pred CC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC----
Q 004922 320 VM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---- 394 (723)
Q Consensus 320 ~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---- 394 (723)
.. ....+++.+..+|...|++++|.+.|++..........+....++..+...+.+.|++++|...+++......
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 00 1223444455555555555555555555544322211222344555555555555555555555555544211
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 395 TPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
......+..+...+...++ +.+|+..+++ .+..+ ....+..+...|.+.|++++|...|++...
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112233444444444555 4444444443 11111 122344555566666666666666665544
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=3.3e-10 Score=123.88 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=118.5
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 145 (723)
.|+. ..++..|...+.+.|++++|+..|+++++. +|+... ++.++...+.+.|++++|++.|+++++ +.
T Consensus 5 ~P~~-a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~------a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~ 73 (723)
T 4gyw_A 5 CPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIR--IS 73 (723)
T ss_dssp -CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 4555 788899999999999999999999999988 666433 334555558889999999999998887 45
Q ss_pred cccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
|+.. ..+..+.. .+.+.|++++|++.|+++++.. |+ +..+++
T Consensus 74 P~~~---~a~~nLg~---~l~~~g~~~~A~~~~~kAl~l~--P~------------------------------~~~a~~ 115 (723)
T 4gyw_A 74 PTFA---DAYSNMGN---TLKEMQDVQGALQCYTRAIQIN--PA------------------------------FADAHS 115 (723)
T ss_dssp TTCH---HHHHHHHH---HHHHTTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHH
T ss_pred CCCH---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CC------------------------------CHHHHH
Confidence 6432 23333333 3444788888888888887754 43 345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.+...|.+.|++++|+..|++..+... -+...+..+..+|...|++++|.+.++++.+
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666677777777777777777666321 2466677777777777777777777766654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=6.4e-09 Score=106.23 Aligned_cols=238 Identities=11% Similarity=0.073 Sum_probs=138.4
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHH--HhcCCHHHHH---------HHHHHHHhC
Q 004922 223 LFCNFVREF--GKKRDLVSALRAYDASKKHL--SSP--NMYICRTIIDVC--GICGDYMKSR---------AIYEDLRSQ 285 (723)
Q Consensus 223 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~--~~~g~~~~a~---------~~~~~m~~~ 285 (723)
+-..|-..| .+.+++++|..+++++.+.. ... +...|..++..- .-.+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334445555 77889999999988875532 222 333444444321 1111211122 445544332
Q ss_pred CCccc-H-----HHHHHHHhhhcCChHHHHHHHHHHHHcCC-Cc----ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 286 NVTLN-I-----YVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MA----DMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 286 g~~~~-~-----~~~~~ll~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
....+ . ..+........|+++.|...|++...... .+ ...++..+...|...|+++.|...+++.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11111 1 11122222344778888888877765311 11 24466677778888888888888888777643
Q ss_pred hcCCc-c-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 004922 355 AKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ- 426 (723)
Q Consensus 355 ~~g~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 426 (723)
..... . ....+++.+...|...|++++|...|++..+. +..+ ...++..+..+|...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32211 1 12446777777888888888888888777642 1111 134567777778888888888888877765
Q ss_pred ----cCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 427 ----AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 427 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.. +....++..+...|.+.|++++|...+++...
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 22355677777777788888888777776543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=6.5e-08 Score=98.54 Aligned_cols=208 Identities=11% Similarity=-0.032 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 299 (723)
.......+...|++++|...+++........+. .+++.+...+...|++++|...+++.....
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 83 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA------------- 83 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-------------
Confidence 334455666788888888888887764322222 245666677778888888888887765421
Q ss_pred hhcCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc--c-cHHHHHHHHHHHHc
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--L-DVFTYSTIVKVFAD 375 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~--~-~~~~~~~ll~~~~~ 375 (723)
. ..|.. ....++..+...+...|++++|...+++........... | ....+..+...+..
T Consensus 84 -------------~---~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 84 -------------R---QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp -------------H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred -------------H---hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 0 00000 011223445555666666666666666655443221111 3 33455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHH
Q 004922 376 AKWWQMALKVKEDMLSAGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCN----ILLQACVE 445 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~ 445 (723)
.|++++|...+++....... ....++..+...+...|++++|...+++.....-.+ ...... ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 66666666666665543211 122445566666666777777777776665421111 111111 12233556
Q ss_pred hCCHHHHHHHHHHhh
Q 004922 446 ACQFDRAFRLFRSWT 460 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~ 460 (723)
.|++++|...++...
T Consensus 228 ~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 228 TGDKAAAANWLRHTA 242 (373)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCC
Confidence 777777777776544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=4e-09 Score=115.38 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=91.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+..+++.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------- 73 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------- 73 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 33445666666777777777777777776665321 245666677777777777777777666655431
Q ss_pred HhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC
Q 004922 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (723)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g 377 (723)
+-+...|..+..+|...|++++|.+.|++..++ -+-+...|+.+...|.+.|
T Consensus 74 -----------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 74 -----------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSG 125 (723)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC
Confidence 123344455555555555555555555555442 1123344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
++++|++.|++.++.... +...|..+..++...|++++|.+.++++.
T Consensus 126 ~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 126 NIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 555555555555544322 34455555555555555555555554443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=1.7e-08 Score=90.99 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
+..++..+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 4444555555555555555555554421 1234455555555555555555555555444321
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~ 383 (723)
+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|.
T Consensus 73 -----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 73 -----------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 123334444444555555555555555554432 1223334444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
..++++...... +...+..+...+...|++++|...+++..
T Consensus 131 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 131 DSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555444443211 33444444444444444444444444443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=3.2e-08 Score=89.07 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 53 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----------------------------------AFDVDVALHLGIAYV 53 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----------------------------------SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------ccChHHHHHHHHHHH
Confidence 3456666677777777777777777655431 345677888889999
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|...++++... .+.+...+..+...+...|++++|.+.++++..... .+...+..+...+...|+++
T Consensus 54 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHH
Confidence 999999999999999873 234677889999999999999999999999987753 37788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
+|...++++.+.. +.+...+..+...+...|++++|...++......
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999998874 5578889999999999999999999999887654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=1e-08 Score=99.74 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCccc-HHHHHHHHhh--hcCChHHHH
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNV--NAHDLKFTL 309 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~~~-~~~~~~ll~~--~~~~~~~a~ 309 (723)
+|++++........+....++..+...|...|++++|+..|+++.+. +-.|. ..++..+-.+ ..|+++.|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443222234678899999999999999999999988754 21222 3344444433 336788888
Q ss_pred HHHHHHHHcC-----C--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccc-cHHHHHHHHHHHHccCCH
Q 004922 310 EVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKL-DVFTYSTIVKVFADAKWW 379 (723)
Q Consensus 310 ~~~~~m~~~g-----~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~-~~~~~~~ll~~~~~~g~~ 379 (723)
+.|.+..... . +....++..+...|...|++++|...|+++...... +...| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 8888776542 1 122456667777788888888888888888774211 10122 345677777788888888
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGLV------EQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 380 ~~a~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
++|..++++.... ...+. ...|..+...+...+.. ..+...+..... ..+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 8888888877653 11122 22333333333322222 222222211110 112234567888899999
Q ss_pred hCCHHHHHHHHHHhhh
Q 004922 446 ACQFDRAFRLFRSWTL 461 (723)
Q Consensus 446 ~g~~~~a~~l~~~~~~ 461 (723)
.|++++|...+++...
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.95 E-value=1.3e-07 Score=88.68 Aligned_cols=191 Identities=10% Similarity=0.025 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
+..+..+...+...|++++|+..|+...+....++...+..+..++...|++++|+..|++..+.... +...|..+-.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 45667777777888888888888888777554356666666777788888888888888877765311 22233333222
Q ss_pred --hcCChHHHHHHHHHHHHcCCCcCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHH
Q 004922 301 --NAHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYST 368 (723)
Q Consensus 301 --~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ 368 (723)
..|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ ..|+ ...|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHHH
Confidence 3356666666666666543 2234 3466666777777888888888877765 3444 345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+|...| ..+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666665433 3334444443322 333443333 23345577788888777765
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.9e-08 Score=97.74 Aligned_cols=153 Identities=13% Similarity=0.096 Sum_probs=116.5
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc---CCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 310 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~---g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
+++..+.....+....++..+...|...|++++|...++++...... +..+....++..+...|...|++++|...+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 29 EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444443333345677888999999999999999999998874311 111334567899999999999999999999
Q ss_pred HHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 004922 387 EDMLSA------G-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GCEP-NSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 387 ~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a 452 (723)
++.... . .+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998764 1 1223567888999999999999999999988765 1122 355788888999999999999
Q ss_pred HHHHHHhhhh
Q 004922 453 FRLFRSWTLS 462 (723)
Q Consensus 453 ~~l~~~~~~~ 462 (723)
...+++....
T Consensus 189 ~~~~~~~l~~ 198 (283)
T 3edt_B 189 ETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.92 E-value=2.5e-07 Score=86.59 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566777777778888888888888888776544566777778888888888888888888887753 33556677777
Q ss_pred HHHHHhCCHHHHHHHHHHhhh
Q 004922 441 QACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 441 ~~~~~~g~~~~a~~l~~~~~~ 461 (723)
.+|...|++++|...+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 888888888888888877654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=2.6e-08 Score=97.40 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=127.8
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcC---ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
....|...+..+...|++++|+..|++++.... +|. .....+.++...+...|++++|+..|+++++. .|
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED-----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 567888889999999999999999999988732 222 12445567778899999999999999999873 22
Q ss_pred ccccccchhhhhHHHHHHhhcc-chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (723)
...........+.+....+... |++++|+..|++.++.. |.. ++... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD--------------QSVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC--------------CChHH----------HHHHHH
Confidence 2110111122233333334444 78888888887766532 110 00000 013466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cc---HHHHH
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFN 295 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~~~~ 295 (723)
.++..|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+.... ++ ...+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 6777777777777777777777664322111 14566666777777777777777776653211 11 11223
Q ss_pred HHHhhhc----CChHHHHHHHHHHH
Q 004922 296 SLMNVNA----HDLKFTLEVYKNMQ 316 (723)
Q Consensus 296 ~ll~~~~----~~~~~a~~~~~~m~ 316 (723)
.+...+. ++++.|++.|+.+.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 3333332 34666666665554
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=3.1e-08 Score=95.12 Aligned_cols=194 Identities=7% Similarity=-0.037 Sum_probs=132.8
Q ss_pred CCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCC
Q 004922 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 145 (723)
+|.. ...+..++..+.+.|++++|+..|++++... |.... ...++..+...+...|++++|+..|+++++. .
T Consensus 11 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~ 82 (261)
T 3qky_A 11 RHSS-PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEW---AADAQFYLARAYYQNKEYLLAASEYERFIQI--Y 82 (261)
T ss_dssp CCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcc---hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--C
Confidence 4455 6777788999999999999999999999984 43210 1233445566689999999999999999984 4
Q ss_pred cccccccchhhhhHHHHHHhhc--------cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC
Q 004922 146 PLELFDGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (723)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (723)
|+... ....+......+.. .|++++|+..|++++... |++......+.......+..
T Consensus 83 p~~~~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------- 147 (261)
T 3qky_A 83 QIDPR---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------- 147 (261)
T ss_dssp TTCTT---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH----------
T ss_pred CCCch---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH----------
Confidence 53321 22233333344445 799999999999998865 55544443222111110000
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 285 (723)
...+..+...|.+.|++++|+..|+.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 148 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ---ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 1235667888888899999999998887753321 245677777777765 8888999999888876
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=1.6e-07 Score=87.73 Aligned_cols=194 Identities=7% Similarity=-0.054 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..|++++... |.... ...++..+...+...|++++|+..|+++++. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 4556677888999999999999999999984 33211 1233345666689999999999999999984 554331
Q ss_pred ccchhhhhHHHHHH---------------hhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 151 DGSGFKLLKNECQR---------------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 151 ~~~~~~~l~~~~~~---------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
....+-.+..++.. ..+.|++++|+..|+++++.. |++...+........-.+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------
Confidence 11111111111111 113688999999999988755 66554443222211100000
Q ss_pred hCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
......+...|.+.|++++|+..|+.+.+..+... ..++..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11234567888999999999999999987532211 2568888999999999999999999888764
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=3.8e-08 Score=87.91 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..+++++.. +|+.... +..+...+...|++++|+..|+++.+. .| ..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a------~~~la~~~~~~g~~~~A~~~~~~a~~~--~p-~~- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDV------KLAKADCLLETKQFELAQELLATIPLE--YQ-DN- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHH------HHHHHHHHHHTTCHHHHHHHHTTCCGG--GC-CH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHH------HHHHHHHHHHCCCHHHHHHHHHHhhhc--cC-Ch-
Confidence 445667788899999999999999999888 6664433 334445588999999999999998763 34 21
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
.....+... .+...+...+|+..+++.++.. |.+..++..+...
T Consensus 74 --~~~~~~~~~--~~~~~~~~~~a~~~~~~al~~~--------------------------------P~~~~~~~~la~~ 117 (176)
T 2r5s_A 74 --SYKSLIAKL--ELHQQAAESPELKRLEQELAAN--------------------------------PDNFELACELAVQ 117 (176)
T ss_dssp --HHHHHHHHH--HHHHHHTSCHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHH
T ss_pred --HHHHHHHHH--HHHhhcccchHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHH
Confidence 111111111 1111122234566666665543 4555677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...|++...
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888999998888888754432 356788888888888998888888887653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=5e-07 Score=76.09 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+...|++++|..+|+.+... .+.+...+..+...+...|++++|..+++++...+.. +...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHH
Confidence 4566777888888888888888888763 2345667777888888888888888888888776433 566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888887764 446677788888888888888888888876543
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=2.3e-07 Score=90.57 Aligned_cols=204 Identities=10% Similarity=-0.014 Sum_probs=144.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.+..|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------- 106 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------- 106 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 366778889999999888877653 21122 567899999999999999999999876642
Q ss_pred cCChHHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHc-CChHHHHHHHHHHHhhhhcCCccc-cHHHHHHHHHHHHccCC
Q 004922 302 AHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKW 378 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~~~~~g~ 378 (723)
+.. .|-.. -..+++.+...|... |++++|...|++...+........ ...++..+...+.+.|+
T Consensus 107 ----------~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 107 ----------FTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp ----------HHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 111 11010 134677788899996 999999999999987532211111 13568889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--
Q 004922 379 WQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS------QCCNILLQACV-- 444 (723)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-- 444 (723)
+++|+..|++.......... ..|..+..++...|++++|...|++..+. .|+. ..+..++.+|.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999999986543322 15777888999999999999999998753 2321 23444566664
Q ss_pred HhCCHHHHHHHHHHhhh
Q 004922 445 EACQFDRAFRLFRSWTL 461 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~ 461 (723)
..+++++|+..|+.+..
T Consensus 252 ~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp CTTTHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHhccCCc
Confidence 34678888888876544
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.8e-07 Score=86.00 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHH
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 108 (723)
...+...+..+...|++++|+..|++++.. +|+...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 39 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTE 39 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChH
Confidence 344556677888999999999999999998 776543
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2.8e-08 Score=109.42 Aligned_cols=168 Identities=11% Similarity=-0.058 Sum_probs=109.1
Q ss_pred hhcCChHHHHHHHHHHH--------HhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccc
Q 004922 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 153 (723)
...|++++|+..+++++ .. +|.....+ ......+...|++++|+..|+++++. .|+.. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~------~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~---~ 468 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELP------LMEVRALLDLGDVAKATRKLDDLAER--VGWRW---R 468 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHH------HHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCH---H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHH------HHHHHHHHhcCCHHHHHHHHHHHhcc--CcchH---H
Confidence 77899999999999998 44 55543332 34445588999999999999999973 55432 2
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHH
Q 004922 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (723)
.+..+.. .+...|++++|+..|+++++.. |++...+..++.++.+.|++++ ++.|+.+ |.+..++..+..
T Consensus 469 a~~~lg~---~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 469 LVWYRAV---AELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 3333333 3344799999999999988866 6666666666666666666666 5555442 555566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG 270 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 270 (723)
.|.+.|++++|+..|++..+. .| +...+..+..++...+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 666666666666666665542 23 2445555555554433
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=1.4e-07 Score=86.87 Aligned_cols=110 Identities=10% Similarity=0.122 Sum_probs=73.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
+.....+.+.|++++|+..|+++++.. |++...+.... ....... .....+.+...|.+.|+++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~----~~~~~~~----------~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN----VDKNSEI----------SSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH----SCTTSHH----------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh----hcchhhh----------hHHHHHHHHHHHHHCCCHH
Confidence 333344556899999999999998865 65554443311 0000000 1123344777888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
+|+..|++..+..+ .+...+..+..+|...|++++|+..|++..+.
T Consensus 72 ~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 72 KAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888877432 36778888888888888888888888888775
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.75 E-value=6.2e-07 Score=75.47 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 302 (723)
++..++..+...|++++|..+|+++.+... .+...+..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 345566666666667777666666655422 245556666666666666666666666554331
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a 382 (723)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHH
Confidence 123334445555556666666666666655542 122344555555556666666666
Q ss_pred HHHHHHHHH
Q 004922 383 LKVKEDMLS 391 (723)
Q Consensus 383 ~~~~~~m~~ 391 (723)
...++++..
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666655554
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.74 E-value=2.5e-06 Score=81.48 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
.++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .||..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~-------- 170 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTV-------- 170 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccccc--------
Confidence 33344555555555555555555555443321 23444555555555555555555555555443 12000
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH--H--cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHcc
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--L--AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~--~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~ 376 (723)
..+..+...|..++. . .+++.+|..+|+++.. ..|+..+-..++.++.+.
T Consensus 171 --------------------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~------~~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 171 --------------------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ------TFPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT------TSCSHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------hCCCcccHHHHHHHHHHc
Confidence 001233333333311 1 2256666666666544 233322233333356666
Q ss_pred CCHHHHHHHHHHHHHCC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 377 KWWQMALKVKEDMLSAG-----V----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 377 g~~~~a~~~~~~m~~~~-----~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
|++++|.+.++.+.+.. - +-|..+...+|......|+ +|.++++++.+.
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66666666666544320 0 1134444444444444554 556666666654
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=7.3e-08 Score=93.80 Aligned_cols=169 Identities=9% Similarity=-0.066 Sum_probs=113.1
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
|+. ...+..++..+.+.|++++|+..|++++.. +|+.... +..+...+...|++++|+..|+++.+. .|
T Consensus 114 p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a------~~~la~~~~~~g~~~~A~~~l~~~~~~--~p 182 (287)
T 3qou_A 114 PRE-EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEI------GLLLAETLIALNRSEDAEAVLXTIPLQ--DQ 182 (287)
T ss_dssp CCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHH------HHHHHHHHHHTTCHHHHHHHHTTSCGG--GC
T ss_pred CCc-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhH------HHHHHHHHHHCCCHHHHHHHHHhCchh--hc
Confidence 444 566677777888888888888888888887 5554333 233444477888888888888877763 44
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
+.. ...+.....+...++.++|+..+++.+... |++..++..
T Consensus 183 ~~~------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------------P~~~~~~~~ 224 (287)
T 3qou_A 183 DTR------YQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------------PEDAALATQ 224 (287)
T ss_dssp SHH------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------------TTCHHHHHH
T ss_pred chH------HHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------------CccHHHHHH
Confidence 221 112222223334566667777777766544 455567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
+...|...|++++|+..|.++.+..... +...+..++..|...|+.++|...|++...
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7788888888888888888887754321 256788888888888888888888776553
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=4.9e-06 Score=79.44 Aligned_cols=207 Identities=12% Similarity=0.008 Sum_probs=137.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (723)
.-.|++..++.-...+. .......-.-+.++|...|++... ..-.|....+..+.....++ ++..
T Consensus 24 fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---CCHH
T ss_pred HHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---HHHH
Confidence 34577777776332221 112223333344666666666531 11223433444444333332 6677
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004922 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 312 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 391 (723)
|+++...+ .++..++..+..++...|++++|++++.+... .+.-.-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777655 45666667888999999999999999998754 221113667888899999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 392 AGVTP-----NTITWSSLINACA--N--AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 392 ~~~~p-----~~~~~~~li~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
. .| +..+...+..++. . .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 45 3555666665532 2 34899999999999765 45544444555589999999999999987654
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=3.5e-07 Score=86.16 Aligned_cols=207 Identities=9% Similarity=-0.093 Sum_probs=142.5
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHH-HhHHHhhhccCccchHHHHHHHHhhcCCCcccccccch-hh----
Q 004922 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG-FK---- 156 (723)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~-~~---- 156 (723)
..++..+|...|.++... +|+.-..++....+ ..-...+.+.++..+++..+.+.++ +.|........ ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 579999999999999999 66654444433100 0002234566667777777777665 56654432222 11
Q ss_pred ----------hhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC------
Q 004922 157 ----------LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA------ 220 (723)
Q Consensus 157 ----------~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 220 (723)
+.+..+..+.+.|++++|.++|+.+...+ |... ....++..+.+.+++++|+..+......
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 11222334555899999999999887655 6555 6777888899999999999998875321
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 298 (723)
..++..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++.... |+...+..|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 2467788999999999999999999987533214 34467777778889999999999999998873 4444444443
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.70 E-value=1e-06 Score=84.38 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=43.5
Q ss_pred CcccccHHHHHHHHhcCCChHHHHHHhhhC----CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-HHH
Q 004922 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYI 258 (723)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~ 258 (723)
+.+...+...+..+.+.|++++|+..|+.+ |.+ ..++..+...|.+.|++++|+..|+...+..+. |. ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 334444444555555555555555544442 223 234444455555555555555555554443211 11 233
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHh
Q 004922 259 CRTIIDVCGI--------CGDYMKSRAIYEDLRS 284 (723)
Q Consensus 259 ~~~l~~~~~~--------~g~~~~a~~~~~~m~~ 284 (723)
+..+..++.. .|++++|+..|+++.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 4444444444 4444444444444443
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=4.8e-06 Score=80.45 Aligned_cols=113 Identities=7% Similarity=-0.090 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC--ChHHHHHHhhhC----CCCcchHHHHHHHH----Hhc---CC
Q 004922 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCNFVREF----GKK---RD 236 (723)
Q Consensus 170 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~----~~~~~~~~~l~~~~----~~~---~~ 236 (723)
..++|+++++.++... |+....|+.-...+...+ ++++++++++.+ |.+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3368899998888866 778788887777777777 777777766553 66667776644444 444 66
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhC
Q 004922 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQ 285 (723)
Q Consensus 237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~ 285 (723)
+++++.+++.+.+... .|..+|+....++.+.|+++ ++++.++.+.+.
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 7777777777776432 36666776666666667666 677777776655
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=7.4e-05 Score=78.23 Aligned_cols=120 Identities=9% Similarity=0.047 Sum_probs=73.8
Q ss_pred HHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 517 TYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWT--ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (723)
Q Consensus 517 ~~~~ll~~~~--~~~~~a~~l~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 592 (723)
.|...+.... ++.+.|..+|... .. ...+..+|. +.+.... .++.+.|..+|+...+.- .-+...|...++-
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3444444432 3567778888777 21 112333443 2222222 236888899988887642 1134556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004922 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (723)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~ 648 (723)
....|+.+.|..+|+++. -....|...+.-=...|+.+.++. +++++.
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~---v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE---LVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH---HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 777888888998888872 257778888877777888776655 444444
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.5e-07 Score=101.76 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=94.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH--HHHhhh
Q 004922 232 GKKRDLVSALRAYDASK--------KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN--SLMNVN 301 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~ 301 (723)
...|++++|++.|++.. +. .+.+...+..+...|...|++++|++.|+++.+... -+...|. ..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 45566666666666665 21 112445566666666666666666666666655421 0111111 112222
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
.|++++|.+.|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+. .+.+...|..+..++.+.|++++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST-----NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----CCchHHHHHHHHHHHHHcCCHHH
Confidence 244444444444444432 3345666677777777777777 7777777663 22345567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
|.+.|++..+.+.. +...+..+..++...++
T Consensus 553 A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 77777776654322 34556666666555443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=2.8e-07 Score=82.23 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=46.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|+...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 456667777788888888888888766532 135677888888888888888888888877654
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=4.6e-08 Score=84.58 Aligned_cols=101 Identities=8% Similarity=0.011 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (723)
.|++++|++.|+++++.. |++...+..++..+...|++++|+..|+.+ |.+..++..+...|.+.|++++|.+.
T Consensus 44 ~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 344444444444444433 444444444444444444444444444332 55567777777788888887766554
Q ss_pred -HHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 004922 244 -YDASKKHLSSPNMYICRTIIDVCGICGD 271 (723)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (723)
+++..+.. +-+..+|......+...|+
T Consensus 122 ~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 122 WVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 46666532 1256677777777666664
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=8.8e-07 Score=87.14 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=78.4
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHH
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (723)
.|++++|..+++++..... ..+ +...+++++|...|.++.. .
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~~---------------~~~~~~~~~A~~~~~~a~~---------------~------ 45 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TSF---------------MKWKPDYDSAASEYAKAAV---------------A------ 45 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCS---------------SSCSCCHHHHHHHHHHHHH---------------H------
T ss_pred cchHHHHHHHHHHHHHHcc--ccc---------------cCCCCCHHHHHHHHHHHHH---------------H------
Confidence 5788888888888776521 100 1113556666666554421 0
Q ss_pred HhhccchHHHHHHHHHHHHhcC----CCCcccccHHHHHHHHhcCCChHHHHHHhhhC----C---C---CcchHHHHHH
Q 004922 164 RLLDSGEVEMFVGLMEVLEEFR----LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----P---R---ADILFCNFVR 229 (723)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~---~---~~~~~~~l~~ 229 (723)
+...|++++|+..|.+..... ........+..++..+...|++++|+..+++. + . ...++..+..
T Consensus 46 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 46 -FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111456666666555544321 11122334455555555556665555554432 0 0 0133445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSP-----NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
.|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|+..|++..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555 66666665555544321000 02345555555555555555555555544
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=1.6e-07 Score=81.15 Aligned_cols=127 Identities=12% Similarity=0.058 Sum_probs=104.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|++++|+..++...... |+....+..++..|.+.|++++|++.++.+ |.+..++..+...|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3689999999999877644 778888899999999999999999998874 8888999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCcccHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI-YEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~l 297 (723)
.|+...+..+ -+..+|..+...|.+.|++++|... +++..+.. +-+...|...
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~ 140 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 9999988532 3688999999999999999876665 57777653 1234445443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.58 E-value=4.8e-06 Score=77.56 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=95.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cc---HHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LN---IYVFNS 296 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~~~~~ 296 (723)
.+..++..+.+.|++++|+..|+.+.+..+. | ....+..+..+|.+.|++++|+..|+++.+.... +. ...+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3445555566666666666666666653221 1 1245556666666666666666666666654221 11 111111
Q ss_pred HHhh------------------hcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC
Q 004922 297 LMNV------------------NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (723)
Q Consensus 297 ll~~------------------~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g 357 (723)
.+.. ..+++++|...|+++.+.. |+ ...+...... ..+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH-------
Confidence 1111 0235566666666666542 22 2222111100 0000000
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 358 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
......+...|.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123455667777888888888888776532211 2456777778888888888888888777653
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=6.1e-07 Score=88.30 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=115.4
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p 146 (723)
.......|...+..+...|++++|...+.+++....... ........+.++...|...|++++|+..|++.++.....
T Consensus 32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 333577888888999999999999999999888732111 111224455677777899999999999999987641111
Q ss_pred ccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
.. .......+.+....+.. |++++|+..|++.+... +. .++... ...++..
T Consensus 110 g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~--------------~~~~~~----------~~~~~~~ 160 (307)
T 2ifu_A 110 GT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--EN--------------EERLRQ----------AAELIGK 160 (307)
T ss_dssp TC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HH--------------TTCHHH----------HHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--Hh--------------CCChhH----------HHHHHHH
Confidence 00 01122334444444555 88888888888776532 10 011100 0145666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+...|.+.|++++|+..|++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777777777777765421 1111 2255566666666777777777777766
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.57 E-value=1.1e-06 Score=85.37 Aligned_cols=162 Identities=12% Similarity=0.001 Sum_probs=100.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
|.+...+..+...+.+.|++++|...|++..+..+ .+...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 44456677788888888999999999998887432 367788888889999999999999998876652 333222111
Q ss_pred Hhh---hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHH
Q 004922 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (723)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~ 371 (723)
... ..++.+.|...|++..... +.+...+..+...+...|++++|...|..+.+. .|+ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 111 1134444555555555443 334555556666666666666666666666552 222 345555666
Q ss_pred HHHccCCHHHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDM 389 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m 389 (723)
.|...|+.++|...|++.
T Consensus 264 ~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHH
Confidence 666666666665555544
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=3.4e-05 Score=74.52 Aligned_cols=220 Identities=9% Similarity=0.012 Sum_probs=163.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCc-ccHHHHHHHHh----hhc--
Q 004922 233 KKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVT-LNIYVFNSLMN----VNA-- 302 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~----~~~-- 302 (723)
+....++|+..++.+... .| +..+|+.-..++...| +++++++.++.+.....+ ..+..+...+- ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 333446899999888874 34 4667888888888888 899999999988876432 22222222222 112
Q ss_pred -CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH--HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC-
Q 004922 303 -HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW- 378 (723)
Q Consensus 303 -~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~- 378 (723)
+++++++++++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++... -+.|...|+.-...+...++
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGG
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcccc
Confidence 57888999999998765 557788888777788888888 999999998874 34577788877777777776
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHH
Q 004922 379 -----WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ-AMHLFEEMLQAG--CEPNSQCCNILLQACVEACQFD 450 (723)
Q Consensus 379 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~ 450 (723)
++++++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+.++|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999988765 88999988888888887444 445555554432 2457788999999999999999
Q ss_pred HHHHHHHHhhh
Q 004922 451 RAFRLFRSWTL 461 (723)
Q Consensus 451 ~a~~l~~~~~~ 461 (723)
+|.++++.+..
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.47 E-value=3.9e-06 Score=90.65 Aligned_cols=150 Identities=10% Similarity=-0.032 Sum_probs=80.5
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004922 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (723)
Q Consensus 205 ~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (723)
|++++|.+.+++. |.+..++..+...|...|++++|...|++..+... .+...+..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444432 33334444555555555555555555555444211 234444455555555555555555444
Q ss_pred HHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcc
Q 004922 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (723)
Q Consensus 281 ~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~ 360 (723)
+..+ .. +.+...+..+..+|...|++++|.+.|++..+. .+
T Consensus 82 ~al~---------------------------------~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p 122 (568)
T 2vsy_A 82 QASD---------------------------------AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LP 122 (568)
T ss_dssp HHHH---------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHh---------------------------------cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 4433 22 335667777777888888888888888877763 22
Q ss_pred ccHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCC
Q 004922 361 LDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~ 394 (723)
.+...+..+...+... |++++|.+.+++..+.+.
T Consensus 123 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 3456677777777777 888888888888776643
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=1.6e-05 Score=73.16 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhc-C----ChHHHHHHHHH
Q 004922 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-H----DLKFTLEVYKN 314 (723)
Q Consensus 240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-~----~~~~a~~~~~~ 314 (723)
|++.|.+..+. -+..++..+...|...+++++|+..|++..+.| +...+..+-..+. + ++++|.+.|++
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44455555443 245555555555555566666666666655544 1222222211111 2 55566666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCcccc---HHHHHHHHHHHHc----cCCHHHHH
Q 004922 315 MQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD----AKWWQMAL 383 (723)
Q Consensus 315 m~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~----~g~~~~a~ 383 (723)
..+.| ++..+..|...|.. .+++++|.+.|++... ..++ ...+..|...|.. .+++++|.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 55543 45555556666655 6677777777777664 2232 5566666666766 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004922 384 KVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (723)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 428 (723)
..|++..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777765 12344566666666543 2 6777777777777665
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.47 E-value=4.2e-06 Score=90.42 Aligned_cols=152 Identities=8% Similarity=-0.094 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh--hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHH
Q 004922 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (723)
Q Consensus 269 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~ 346 (723)
.|++++|.+.|++..+... .+...|..+-.. ..|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888776521 224444444433 3478888888888887764 34567777888888888888888888
Q ss_pred HHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 004922 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEE 423 (723)
Q Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~ 423 (723)
|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++
T Consensus 80 ~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888763 2335667888888888888888888888888776433 567778888888888 888888888888
Q ss_pred HHHcC
Q 004922 424 MLQAG 428 (723)
Q Consensus 424 ~~~~~ 428 (723)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 87764
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=9e-06 Score=79.28 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+...+..+...|++++|...+.+.+.......... ........+...+...|++++|+..++++++.......
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-- 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC--
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc--
Confidence 34455667777888888888888888777643211111 11222334555567778888888888887753221111
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCC----cchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA----DILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~ 226 (723)
.......+......+...|++++|+..|+++++.. +..+.+ ..+++.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHh
Confidence 11112233333444445788888888777765311 001111 146788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 283 (723)
++..|...|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...|++..
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8999999999999999998876431 111 166789999999999999999 77777655
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.45 E-value=8.3e-06 Score=75.03 Aligned_cols=161 Identities=14% Similarity=0.007 Sum_probs=117.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
..++..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4567777777888888888888888887753 56777777777777 6 7888888888887765 2333333
Q ss_pred HHhhh------cCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHH----cCChHHHHHHHHHHHhhhhcCCccccHHH
Q 004922 297 LMNVN------AHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (723)
Q Consensus 297 ll~~~------~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~g~~~~~~~~ 365 (723)
+-..+ .++++.|++.|++..+.|.. .++..+..|...|.. .+++++|...|++... ...+...
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~a 164 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS------LSRTGYA 164 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------TSCTTHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH------cCCCHHH
Confidence 33322 35788888888888876521 126777788888888 7889999999999876 2235556
Q ss_pred HHHHHHHHHcc-C-----CHHHHHHHHHHHHHCCC
Q 004922 366 YSTIVKVFADA-K-----WWQMALKVKEDMLSAGV 394 (723)
Q Consensus 366 ~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~ 394 (723)
+..|...|... | ++++|...|++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777777653 3 89999999999888764
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=0.002 Score=67.27 Aligned_cols=352 Identities=8% Similarity=-0.014 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCc-ccHHHHHHHHhhhc------CCh
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~-g~~-~~~~~~~~ll~~~~------~~~ 305 (723)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999998873 4788888888887766663 45667788877654 543 36677888777643 356
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc--------------CChHHHHHHHHHHHhhhhcCCccccHHHHHHHHH
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------------~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~ 371 (723)
+.+.++|++........-...|...... ... +.+..|..+++.+...... .+...|...+.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~ 180 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHH
Confidence 6788888888763211111122211111 111 1222233333333321100 12223333333
Q ss_pred HHHccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 372 VFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 372 ~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
--...+ ..+.+..+|++++...+ -+...|...+..+.+.|+.+.|..++++.... +.+...+. .|.
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~ 253 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYG 253 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHH
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHH
Confidence 211110 02334556666655432 24555555555566666666666666666655 22221111 121
Q ss_pred HhCCHHHHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH
Q 004922 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 524 (723)
.....++. ++. +...
T Consensus 254 ~~~e~~~~---~~~--------------------------------------------------------------l~~~ 268 (493)
T 2uy1_A 254 LVMDEEAV---YGD--------------------------------------------------------------LKRK 268 (493)
T ss_dssp HHTTCTHH---HHH--------------------------------------------------------------HHHH
T ss_pred hhcchhHH---HHH--------------------------------------------------------------HHHH
Confidence 11111111 111 1111
Q ss_pred Hhh-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 004922 525 CCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR-SKRLKQA 602 (723)
Q Consensus 525 ~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A 602 (723)
+.. ..+.+. . .. .......|...+..+.+.++.+.|..+|++. ... .++...|......-.. .++.+.|
T Consensus 269 ~~~~~~~~~~-----~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 269 YSMGEAESAE-----K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp TC----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHhhccchhh-----h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHH
Confidence 100 000000 0 00 0011245666666666778899999999999 321 2344444332222222 3479999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccc
Q 004922 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEV 681 (723)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~ 681 (723)
.++|+...+.- .-++..|...++...+.|+.+.++. +|++.. -....|...++-=.+ |+.+.+..++++.
T Consensus 340 r~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~---l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 340 YNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARA---LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH---HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988642 2245567777887788898777554 666652 135566666653333 6666666655554
Q ss_pred hH
Q 004922 682 TL 683 (723)
Q Consensus 682 ~~ 683 (723)
..
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.41 E-value=1.6e-06 Score=72.09 Aligned_cols=116 Identities=6% Similarity=-0.089 Sum_probs=84.9
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 143 (723)
..+|+. ...+......+.+.|++++|+..|++++.. +|..... +.++...+...|++++|+..|+++++
T Consensus 7 ~inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~~~~~~~~~~~~~~A~~~~~~al~-- 75 (126)
T 4gco_A 7 YINPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL------YSNRAACLTKLMEFQRALDDCDTCIR-- 75 (126)
T ss_dssp CCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHhhHHHhhccHHHHHHHHHHHHH--
Confidence 356777 788888999999999999999999999988 6664433 34445558899999999999999998
Q ss_pred CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHH
Q 004922 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (723)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (723)
+.|+.. .. +......+...|++++|+..|++.++.. |++......+.
T Consensus 76 ~~p~~~---~a---~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 76 LDSKFI---KG---YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp HCTTCH---HH---HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhhhhh---HH---HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 455432 22 3333334445899999999999988865 66655544443
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=3.8e-06 Score=72.02 Aligned_cols=90 Identities=8% Similarity=0.036 Sum_probs=45.8
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHh
Q 004922 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGK 233 (723)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 233 (723)
+......+.+.|++++|+..|++++... |.+...|..++.++...|++++|+..|+++ |.+..++..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3333334445677777777777776654 555544444444444444444444444432 4444444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 004922 234 KRDLVSALRAYDASKK 249 (723)
Q Consensus 234 ~~~~~~A~~~~~~~~~ 249 (723)
.|++++|...|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=1.1e-06 Score=84.92 Aligned_cols=193 Identities=6% Similarity=-0.026 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
...+..++..+.+.|++++|+..|++++.. .|.... .+.++...+...|++++|+..++++++ +.|+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~- 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAV------YYTNRALCYLKMQQPEQALADCRRALE--LDGQSV- 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHH------HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCH-
Confidence 567788899999999999999999999998 555333 334555568899999999999999997 566433
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHH-hhhCCCCcchHHHHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACIVPRADILFCNFVR 229 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~l~~ 229 (723)
..+..+. ..+...|++++|+..|+++++.. |++...+...+....+..+....... -...+.+......+..
T Consensus 73 --~~~~~lg---~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 73 --KAHFFLG---QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp --HHHHHHH---HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred --HHHHHHH---HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2333333 34445899999999999988754 43322111111111111111111111 1223444444444433
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 004922 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 285 (723)
.+ .|++++|++.++...+. .|+ ......+...+.+. +.+++|.++|..+.+.
T Consensus 146 l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 LI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 32 68888888888877663 343 33444444445554 6678888888877653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.37 E-value=1.9e-05 Score=72.72 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcC
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 303 (723)
+..+...+...|++++|...|++.. .|+..++..+...|...|++++|+..|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 4556667777788888887777663 3567777777777878888888877777665431
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC----------ccc-cHHHHHHHHHH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKV 372 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~----------~~~-~~~~~~~ll~~ 372 (723)
+.+...+..+..++...|++++|...|+.......... ..| ....+..+..+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 23455666777777778888888888777766321110 111 22567777778
Q ss_pred HHccCCHHHHHHHHHHHHHCCC
Q 004922 373 FADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
|...|++++|...|++......
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888888877543
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=0.00032 Score=68.11 Aligned_cols=129 Identities=9% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HH
Q 004922 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TI 399 (723)
Q Consensus 329 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~ 399 (723)
..+..+...|++++|..++++.... ....++. ..+..+...+...+++++|...|++....... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3466788899999999999988762 1122332 13345666777788999999999999874322 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQA-----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
+++.+...|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888899999999999999999888741 1122 22367778888889999999988887654
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.32 E-value=5.5e-06 Score=71.02 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.....+. +...|..+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 4444555555566666666666655542 1223445555555566666666666666665554332 445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004922 406 NACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+|.+.|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666555554
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=3e-05 Score=67.86 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... +...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 345667788889999999999999998873 2346778889999999999999999999999887533 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHhhh
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI--LLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+..++...|++++|...|++..+.. +.+...+.. ....+.+.|++++|...+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998864 335555533 34447788999999999987654
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=3.2e-05 Score=63.63 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|..+++++..... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 456777888889999999999999988763 234567788888899999999999999999887643 36778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (723)
+...+...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 8999999999999999999888764 3455555555555443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.30 E-value=2.6e-05 Score=64.58 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+......|.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..|++.++.+.. +...|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 346677888899999999999999998874 2446778888999999999999999999999887544 6788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+..++...|++++|...|++..+.. +-+...+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999988863 2344444433
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=2.5e-05 Score=64.98 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=97.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++....... +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHH
Confidence 4566777888889999999999999998863 2346678888889999999999999999999876433 577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 004922 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (723)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|+.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999988764 44677777777777777654
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.27 E-value=2.5e-05 Score=71.79 Aligned_cols=129 Identities=10% Similarity=-0.116 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+...|++++|...|++. +.|+...|..+...|...|++++|...|++....... +...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence 3456677888999999999999865 3467889999999999999999999999999877533 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.+|...|++++|...|++..+.... | ....+..+..+|.+.|++++|...|+......
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885311 1 23678888899999999999999999887654
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=0.00044 Score=67.11 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CC
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PN 397 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---p~ 397 (723)
..+...+..+...|++++|.+.+....... . ..++ ...+..+...+...|++++|...+++....... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE--E-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--C-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc--c-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 345566778889999999999998877521 0 1111 122444566677889999999999998754221 11
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 004922 398 --TITWSSLINACANAGLVEQAMHLFEEMLQ---A-GCEP--NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (723)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~g~~~~a~~l~~~~~ 460 (723)
..+|+.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44788899999999999999999998873 2 1111 12578888889999999999999887654
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.25 E-value=2.5e-05 Score=76.05 Aligned_cols=182 Identities=10% Similarity=-0.017 Sum_probs=118.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccc
Q 004922 73 YYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (723)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 151 (723)
.+...+..+...|++++|...+++.+.... .|... .....+..+...+...|++++|+..|+++++........
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-- 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ---QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-- 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH---HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH---HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--
Confidence 344457788889999999999999988632 22211 112222335555778889999999999998742222111
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC-cccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (723)
......+......+...|++++|+..|+++++.-... .+. +....++.+++..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------------------EFDVKVRYNHAKA 205 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH--------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch--------------------------hHHHHHHHHHHHH
Confidence 1112233344444555899999999998876411000 000 0012467888899
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 004922 231 FGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICG-DYMKSRAIYEDLRSQ 285 (723)
Q Consensus 231 ~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 285 (723)
|.+.|++++|+..+++..+. +..+. ..+|..+..+|.+.| ++++|.+.|++....
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999998876642 22222 678999999999999 469999998887653
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=9.4e-06 Score=76.44 Aligned_cols=186 Identities=8% Similarity=-0.117 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHH-------HHHHhcCCChHHHHHHhhhC----CCC----------------
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI-------VQLCVNKPDVNLAIRYACIV----PRA---------------- 220 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~----~~~---------------- 220 (723)
.++...|.+.|.++.... |.....|..+ +.++.+..+..+++..+... |..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 689999999999998866 7777777666 34444433333333322221 110
Q ss_pred -----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 004922 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (723)
Q Consensus 221 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 295 (723)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. +..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~--- 168 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKF--- 168 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHH---
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---Ccc---
Confidence 1122335566667777777777777665532 332255555556667777777777776433221 000
Q ss_pred HHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHHHHHHHH
Q 004922 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVF 373 (723)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~ll~~~ 373 (723)
.....+..+..++...|++++|+..|++... |...| ..........++
T Consensus 169 --------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL 218 (282)
T 4f3v_A 169 --------------------------LAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMAR 218 (282)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHH
Confidence 0122445566677777777777777777653 22213 223455566667
Q ss_pred HccCCHHHHHHHHHHHHHCC
Q 004922 374 ADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~ 393 (723)
.+.|+.++|..+|+++....
T Consensus 219 ~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 219 RSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777653
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=1.2e-05 Score=77.71 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
+...+..+...+.+.|++++|...|++.+..... +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445566666677777777777777777665332 56667777777777777777777777776653 345566777777
Q ss_pred HHHHhCCHHHHHHHHHHhhhh
Q 004922 442 ACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+|...|++++|...|+.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766543
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=3.1e-05 Score=64.67 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=94.2
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (723)
Q Consensus 321 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (723)
+.+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++....... +...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHH
Confidence 345667778888899999999999999998762 2346778888888999999999999999999876533 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (723)
+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8889999999999999999999888763 234455666666665554
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.22 E-value=9.8e-06 Score=69.49 Aligned_cols=110 Identities=11% Similarity=-0.034 Sum_probs=82.2
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..++..+...|++++|+..|++++.. +|.....+ ..+...+...|++++|+..|++
T Consensus 10 ~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 10 IAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFF------LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHH------HHHHHHHHHHhhHHHHHHHHHH
Confidence 44567788888 788888999999999999999999999988 56544333 3444458899999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
+++ +.|+.. ..+..+. ..+...|++++|+..|++.++..
T Consensus 81 al~--l~p~~~---~~~~~lg---~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 81 GAV--MDIXEP---RFPFHAA---ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH--HSTTCT---HHHHHHH---HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCCc---hHHHHHH---HHHHHcCCHHHHHHHHHHHHHHC
Confidence 987 455432 2332333 33445899999999999988755
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00016 Score=70.49 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC-ChHHHHHHhhhC----CCCcchHHHHHHHHHhc-C-CHHHHH
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCNFVREFGKK-R-DLVSAL 241 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~-~-~~~~A~ 241 (723)
+..++|+++++.++... |+....|+.-...+...+ .+++++.+++.+ |++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457788888877765 666666655555555444 244444443332 44444444433333333 3 444555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~ 321 (723)
.+++.+.+... .|..+|+....++.+.|.++.+ + ...+.++++.++++.+.. +
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~--------------~-----------~~~~~eELe~~~k~I~~d-p 198 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRI--------------S-----------EAQWGSELDWCNEMLRVD-G 198 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCC--------------C-----------HHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcccccc--------------c-----------hhhHHHHHHHHHHHHHhC-C
Confidence 55555444321 2344444333333333322200 0 000124555555555543 3
Q ss_pred cChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCH---------------
Q 004922 322 ADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW--------------- 379 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~--------------- 379 (723)
-|...|+.....+.+.+. ++++++.+++.... .+-|...|+.+-..+.+.|+.
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 355555555555555544 45666666555542 234555565555545444432
Q ss_pred -----HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 380 -----QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 380 -----~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.........+...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 1346777778888888888888888888887643
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=3.6e-05 Score=70.00 Aligned_cols=165 Identities=16% Similarity=0.029 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHH
Q 004922 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (723)
Q Consensus 232 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (723)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------- 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------------------------- 55 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------------------------
Confidence 4568888888855555431 2235667888888888999999999888876542
Q ss_pred HHHHHHcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccc--cHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 312 YKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 312 ~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+. ..+. .....++..+...+...|++++|.+.+++...........+ ....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11 1111 12345677777888889999999998888876533221111 234577777888888888888888888
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 389 MLSAGV-TPN----TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 389 m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
...... ..+ ..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 764210 011 23456777778888888888887776653
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=6.5e-05 Score=65.60 Aligned_cols=130 Identities=14% Similarity=-0.056 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~ 58 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYL 58 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHH
Confidence 3456666666777777777777777665431 235666777777888
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCC
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS--SLINACANAGL 413 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~ 413 (723)
..|++++|...+++.... .+.+...+..+..++...|++++|...|++....... +...+. .++..+.+.|+
T Consensus 59 ~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~ 132 (166)
T 1a17_A 59 RTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKA 132 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 888888888888888763 2345667788888888888888888888888776433 444443 33334667788
Q ss_pred HHHHHHHHHHHH
Q 004922 414 VEQAMHLFEEML 425 (723)
Q Consensus 414 ~~~a~~~~~~~~ 425 (723)
+++|...+....
T Consensus 133 ~~~A~~~~~~~~ 144 (166)
T 1a17_A 133 FERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHcccchH
Confidence 888888776654
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=9.9e-06 Score=68.96 Aligned_cols=110 Identities=6% Similarity=-0.112 Sum_probs=80.0
Q ss_pred hhhccccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH
Q 004922 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (723)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 138 (723)
+.+.+..+|+. ...+..++..+.+.|++++|+..|++++.. +|.....+ ..+...+...|++++|+..|++
T Consensus 7 l~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 7 LAMLRGLSEDT-LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYF------LGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp --CCTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHH------HHHHHHHHHHhhHHHHHHHHHH
Confidence 33456677777 777888899999999999999999999988 66544333 3344458899999999999999
Q ss_pred HhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcC
Q 004922 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (723)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (723)
+++. .|+.. ..+..+.. .+...|++++|+..|++++...
T Consensus 78 al~~--~p~~~---~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 78 GALM--DINEP---RFPFHAAE---CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHH--CTTCT---HHHHHHHH---HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCCc---HHHHHHHH---HHHHcCCHHHHHHHHHHHHHhC
Confidence 9984 55432 22223333 3444899999999999887755
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=9.8e-06 Score=72.06 Aligned_cols=116 Identities=6% Similarity=-0.010 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCCH--HHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRDL--VSA 240 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~-~~~~~~~--~~A 240 (723)
.|++++|+..+++.+... |.+...+..++..+...|++++|...++.+ |.+..++..+... |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 789999999999988766 777788888999999999999998887774 6677788888888 7788888 999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
...|+...+... .+...+..+...|...|++++|...|+.+.+..
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999988887532 357778888888889999999999998888763
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=3.4e-05 Score=76.64 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----------------HHHHHHHHHHHHccCCHHHHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
+...+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778888999999999999999999874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHhhh
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~l~~~~~~ 461 (723)
++.+...+. +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987644 78899999999999999999999999999874 45677888899999999999988 456666654
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.00048 Score=67.21 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=156.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHh---hhc
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMN---VNA 302 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~---~~~ 302 (723)
+.....+.+..++|+++++.+...+. -+..+|+.--.++...| +++++++.++.+..... -+...|+.--. ...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhc
Confidence 33344455566788888888887432 25667777777777777 58888888888887643 23444443222 222
Q ss_pred C-ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH--------HHHHHHHHHHhhhhcCCccccHHHHHHHHHHH
Q 004922 303 H-DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV--------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (723)
Q Consensus 303 ~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--------~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~ 373 (723)
+ ++++++++++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+. .+.|...|+.....+
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-----DGRNNSAWGWRWYLR 211 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence 4 7788888888888765 446677766555555555555 888888888773 345778898888888
Q ss_pred HccCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHH
Q 004922 374 ADAKW-------WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV--------------------EQAMHLFEEMLQ 426 (723)
Q Consensus 374 ~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~ 426 (723)
.+.++ ++++++.+++.+...+. |...|+.+-..+.+.|.. ........++..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 88776 78999999999987655 888898877777776653 222222222222
Q ss_pred cC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 427 AG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 427 ~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+ -.++...+..+.+.|...|+.++|.++++.+...
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 21 1468888999999999999999999999988643
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=0.00011 Score=60.21 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 004922 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (723)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 335 (723)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 5567777777788888888888877766431 234556666777777
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
..|++++|...|+.+... .+.+...+..+...+...|++++|...++++....+. +...+..+...+.
T Consensus 55 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 788888888888777653 2345567777777788888888888888887765432 4445555544443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=1.6e-05 Score=68.05 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+. +...+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 444555566666677777777777766652 2234556666666666777777777777766655432 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 404 LINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666777777777766666553
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.11 E-value=3.1e-05 Score=68.80 Aligned_cols=119 Identities=10% Similarity=0.115 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHH-HHccCCH--
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~-~~~~g~~-- 379 (723)
++++.|...++...... +.+...+..+...|...|++++|...|++.... .+.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhcCCcch
Confidence 46667777777776654 456778888889999999999999999998874 23356677777877 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 428 (723)
++|...+++.....+. +...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999887543 67788888999999999999999999988763
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.11 E-value=4.8e-05 Score=69.15 Aligned_cols=159 Identities=10% Similarity=-0.025 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc-cccHHHHHHHHHHHHccCCHHH
Q 004922 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQM 381 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~-~~~~~~~~~ll~~~~~~g~~~~ 381 (723)
|+++.|.+.++.+.. .......++..+...+...|++++|...+++.......... ......+..+...+...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455666664433322 11234667888888999999999999999998875443222 2234578888899999999999
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHhCCHH
Q 004922 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (723)
Q Consensus 382 a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~g~~~ 450 (723)
|...+++.... +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999987653 2111 23467888889999999999999999876421 1111 234677788899999999
Q ss_pred HHHHHHHHhhhh
Q 004922 451 RAFRLFRSWTLS 462 (723)
Q Consensus 451 ~a~~l~~~~~~~ 462 (723)
+|.+.+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=4.2e-05 Score=75.95 Aligned_cols=130 Identities=9% Similarity=-0.031 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
..++..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35677777888888888888888888776432211 3455555555555566655555555544321
Q ss_pred CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
+.+...+..+..+|...|++++|...|+++..+ .+.+...+
T Consensus 227 ----------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~ 267 (336)
T 1p5q_A 227 ----------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAK 267 (336)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHH
T ss_pred ----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence 223445555555666666666666666665552 12234455
Q ss_pred HHHHHHHHccCCHHHH-HHHHHHH
Q 004922 367 STIVKVFADAKWWQMA-LKVKEDM 389 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a-~~~~~~m 389 (723)
..+..++.+.|++++| ..+|..|
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555 2344443
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.00051 Score=66.69 Aligned_cols=115 Identities=9% Similarity=-0.049 Sum_probs=64.2
Q ss_pred cchHH-HHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCC----------hHHHHHHhhh----CCCCcchHHHHHHHHH
Q 004922 168 SGEVE-MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD----------VNLAIRYACI----VPRADILFCNFVREFG 232 (723)
Q Consensus 168 ~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~----~~~~~~~~~~l~~~~~ 232 (723)
.|.+. +|+++++.++... |+....|+.-...+...+. +++++.+++. -|.+..+|+.-.-.+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 45554 7899999998866 7777777765555543332 2344444333 2555555555444444
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC
Q 004922 233 KKR--DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ 285 (723)
Q Consensus 233 ~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~ 285 (723)
+.+ .+++++.+++.+.+... .|..+|+.-..++...|. ++++++.++.+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 444 25566666666555422 345555555555555555 35555555555544
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.00012 Score=60.52 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+.+.|++++|...|++.... .+.+...|..+..+|.+.|++++|+..+++.+...+. +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 445667778888999999999999988873 2345678888888899999999999999998877543 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 404 LINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+..++...|++++|...|++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Confidence 888999999999999999888765
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=8.6e-05 Score=61.86 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|+..|++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------------- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------
Confidence 3556667777777777777777777776642 1356667777777777777777777776665431
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+.+...+..+..++...|++++|.+.|++...
T Consensus 81 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 81 --------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22445566666667777777777777777665
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.04 E-value=0.00012 Score=60.69 Aligned_cols=119 Identities=13% Similarity=-0.066 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 004922 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (723)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 334 (723)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666677777777777777777665431 23455666677777
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
...|++++|.+.++..... .+.+...+..+...+...|++++|...|++....... +...+..+..++.+.|+
T Consensus 57 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 7778888888877777663 2234566777777777888888888888777765432 55666666666666554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=0.00011 Score=60.87 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~---- 397 (723)
...+..+...+.+.|++++|.+.|++...+ .+.+...|..+..+|.+.|++++|++.+++.++.... ++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 345667888899999999999999998874 2345677888999999999999999999988764221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
..+|..+..++...|++++|++.|++.... .||+.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 236777888888999999999999988765 566655443
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=2.1e-05 Score=68.35 Aligned_cols=150 Identities=7% Similarity=-0.107 Sum_probs=96.8
Q ss_pred hhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccc
Q 004922 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (723)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 149 (723)
....+..++..+...|++++|+..+++++.... ...........+..+...+...|++++|...++++.+.. +...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhC
Confidence 466788899999999999999999999988732 211112223455677777899999999999999987631 1110
Q ss_pred cccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHH
Q 004922 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (723)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (723)
........+......+...|++++|+..+++.+...... ++. +....++..+..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~----------~~~~~~~~~la~ 137 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDR----------IGEGRACWSLGN 137 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCH----------HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cch----------HhHHHHHHHHHH
Confidence 001112233333334445788899988888766432000 000 001245667788
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004922 230 EFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 230 ~~~~~~~~~~A~~~~~~~~~ 249 (723)
.|...|++++|...+++..+
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888888888888887654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=0.00023 Score=57.62 Aligned_cols=108 Identities=19% Similarity=0.052 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 455667778888889999999999888763 2346677888888888899999999999888876433 6777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004922 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (723)
Q Consensus 404 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (723)
+..++...|++++|...+++..+.. +.+...+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 111 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEG 111 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 8888889999999999998887653 234444433
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=3.1e-05 Score=70.29 Aligned_cols=123 Identities=13% Similarity=-0.022 Sum_probs=60.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
..+..+...+...|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..++...+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 4455566666677777777777777665321111 134444444444555555554444444332
Q ss_pred CcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
. +.+...+..+..+|...|++++|...|++...+ .+.+...+
T Consensus 118 --------------------------------~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 159 (198)
T 2fbn_A 118 --------------------------------D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIR 159 (198)
T ss_dssp --------------------------------S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred --------------------------------C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence 1 223444555555555666666666666555542 12233444
Q ss_pred HHHHHHHHccCCHHHHH
Q 004922 367 STIVKVFADAKWWQMAL 383 (723)
Q Consensus 367 ~~ll~~~~~~g~~~~a~ 383 (723)
..+..++...++.+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=6.3e-05 Score=60.37 Aligned_cols=97 Identities=9% Similarity=0.035 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 004922 189 KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTI 262 (723)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l 262 (723)
++...+..++..+...|++++|...++.+ |.+..++..+...+...|++++|...|++..+... . +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 33444444555555555555555544432 44456666777777777777777777777776432 2 46677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCC
Q 004922 263 IDVCGIC-GDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 263 ~~~~~~~-g~~~~a~~~~~~m~~~g 286 (723)
...+... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777776653
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0005 Score=71.13 Aligned_cols=217 Identities=6% Similarity=-0.084 Sum_probs=107.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHH
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (723)
+.-+..+...|++++|++.|..++.......+..... +....... ....++..++..|...|+++
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~------~~~~al~~l~~~y~~~~~~~ 72 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA---------SVDDKRRN------EQETSILELGQLYVTMGAKD 72 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS---------SBCSHHHH------HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH---------HHHHHHhh------hHHHHHHHHHHHHHHCCCHH
Confidence 3344455668999999999999987653322211000 00000000 00134566778888888888
Q ss_pred HHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccc-HHHHHHHHhhh--cCChH
Q 004922 239 SALRAYDASKKHL-SSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNVN--AHDLK 306 (723)
Q Consensus 239 ~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~--~~~~~ 306 (723)
+|.+.+..+...- ..++. .+.+.+...+...|++++|..+++..... +..+. ..++..+...+ .|+++
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH
Confidence 8888777755421 11121 23344444455567888888887776532 11111 12222222222 24555
Q ss_pred HHHHHHHHHHHc--CC---CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccCCH
Q 004922 307 FTLEVYKNMQKL--GV---MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW 379 (723)
Q Consensus 307 ~a~~~~~~m~~~--g~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g~~ 379 (723)
.|..+++++... +. +....++..++..|...|++++|..++++.......-..++. ...+..+...+...+++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 555555444321 10 111334555566666666666666666665543222111111 12344444455555666
Q ss_pred HHHHHHHHHHH
Q 004922 380 QMALKVKEDML 390 (723)
Q Consensus 380 ~~a~~~~~~m~ 390 (723)
++|...|.+..
T Consensus 233 ~~A~~~~~~a~ 243 (434)
T 4b4t_Q 233 KTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.95 E-value=0.00025 Score=61.88 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=86.5
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (723)
.+...+..+...+...|++++|...|++.... .+.+...|..+..+|.+.|++++|+..|++.+..... +...|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 34567778888999999999999999999874 2346778999999999999999999999999987644 68889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 402 SSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 402 ~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
..+..+|...|++++|...|++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=0.00013 Score=60.41 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~---- 397 (723)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++....... ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345667778888899999999999988763 2346677888888888999999999999888765321 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
..++..+...+...|++++|...|++..+. .|+......+..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 667888888899999999999999988875 3566555554444
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00018 Score=59.36 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
...|..+...+.+.|++++|...|++.+...+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456777888899999999999999999987544 78899999999999999999999999999874 4568889999999
Q ss_pred HHHhCCHHHHHHHHHHhhhhh
Q 004922 443 CVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 443 ~~~~g~~~~a~~l~~~~~~~~ 463 (723)
+...|++++|...|++.....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=0.00013 Score=61.94 Aligned_cols=95 Identities=14% Similarity=-0.040 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (723)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+. +...+..+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 93 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 3444455555666666666666665542 1234445555666666666666666666666654432 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004922 406 NACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~ 426 (723)
.+|...|++++|...|+...+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666665554
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00028 Score=60.00 Aligned_cols=110 Identities=10% Similarity=-0.008 Sum_probs=87.6
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004922 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (723)
Q Consensus 322 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (723)
.+...+..+...+...|++++|...|++... ..|+ ...|..+..+|...|++++|...+++....... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-D 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-C
Confidence 3566777888888999999999999999887 4455 577888888999999999999999998876433 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
...+..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 7788888999999999999999999988763 2344444433
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00018 Score=59.57 Aligned_cols=112 Identities=13% Similarity=-0.043 Sum_probs=82.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.++..++..+.+.|++++|+..|++..+..+ .+...|+.+..+|.+.|++++|++.|++..+.. |+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~--------- 76 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETR--------- 76 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccc---------
Confidence 4677889999999999999999999887532 368889999999999999999999998877531 1000
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~ 367 (723)
..+ ..-..+|..+..++...|++++|.+.|++... ..||.....
T Consensus 77 -~~~---------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~------~~~~~~~~~ 120 (127)
T 4gcn_A 77 -ADY---------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS------EFRDPELVK 120 (127)
T ss_dssp -CCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSCCHHHHH
T ss_pred -hhh---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcCHHHHH
Confidence 000 00023566677888889999999999988876 456654433
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.91 E-value=0.00027 Score=59.22 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|...+++....... +...+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3444444555555555555555555555442 1223344555555555555555555555555543322 344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004922 403 SLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 403 ~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
.+..++...|++++|...|++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555555444
No 165
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=6.2e-05 Score=78.05 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=97.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc---CCCcccccccchh
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGF 155 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~~~ 155 (723)
..+..+|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.+++++++. -..|+.. .+.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a 393 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA---QLG 393 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH---HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH---HHH
Confidence 4466889999999999999988643333334445778889999999999999999999998764 2344433 344
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
..+.++...+...|++++|+.++++.++.... .....++ ....+...+...+...+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------~lG~~Hp-----------~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLV-------------THGPSHP-----------ITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------HTCTTSH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------HhCCCCh-----------HHHHHHHHHHHHHHHHH
Confidence 45555555566689999999999887642100 0000111 11134456677777788
Q ss_pred CHHHHHHHHHHHHh
Q 004922 236 DLVSALRAYDASKK 249 (723)
Q Consensus 236 ~~~~A~~~~~~~~~ 249 (723)
.+++|..+|..+.+
T Consensus 450 ~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 450 MFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0016 Score=67.25 Aligned_cols=200 Identities=12% Similarity=-0.085 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCcc
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSP-N---------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTL 289 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~~ 289 (723)
-...+.+.|++++|++.|..+.+..... + ..++..+...|...|++++|.+.+..+... +-.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3455677899999999999887743221 1 134778899999999999999999987653 1112
Q ss_pred cHH---HHHHHHhh---hcCChHHHHHHHHHHHH----cCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC
Q 004922 290 NIY---VFNSLMNV---NAHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (723)
Q Consensus 290 ~~~---~~~~ll~~---~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~ 358 (723)
+.. .....+.. ..++++.+.+++..... .+..+. ..++..+...|...|++++|..+++.+........
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 12222222 22577777777776643 222222 34666777888888888888888887765322211
Q ss_pred ccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 359 LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSA--GV-TP-N--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 359 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
..+ ....+..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...|.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 2346777777888888888888888776532 11 11 1 23455556666677778777777666543
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.86 E-value=0.00026 Score=64.02 Aligned_cols=135 Identities=12% Similarity=-0.045 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
...+..+...+...|++++|...|++...+......... ...|..+..+|...|++++|+..+++.+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777888899999999999988863211100001 267888888999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhh
Q 004922 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (723)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~l~~~~~ 460 (723)
... +...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++..++. ..+..+.
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 533 67888899999999999999999999988763 446677777777777777666665 4444443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.85 E-value=0.00036 Score=58.45 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
+.+...+..+...+...|++++|...|++.+..... +...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456778999999999999999999999999887543 67889999999999999999999999999874 4578889999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..+|...|++++|...|+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999887654
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.84 E-value=0.0002 Score=57.28 Aligned_cols=93 Identities=14% Similarity=-0.012 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCNILLQAC 443 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 443 (723)
+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 333444444444444444444444433221 33444444444444444444444444444432 11 344444444444
Q ss_pred HHh-CCHHHHHHHHHHhh
Q 004922 444 VEA-CQFDRAFRLFRSWT 460 (723)
Q Consensus 444 ~~~-g~~~~a~~l~~~~~ 460 (723)
.+. |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 55555555444443
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.83 E-value=0.00027 Score=61.57 Aligned_cols=102 Identities=16% Similarity=0.049 Sum_probs=90.1
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (723)
..+...+..+...+.+.|++++|+..|++.+..... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345667888899999999999999999999987544 78899999999999999999999999999874 4568889999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 440 LQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 440 l~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
..+|.+.|++++|...|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999887654
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00088 Score=53.98 Aligned_cols=99 Identities=13% Similarity=-0.018 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (723)
....+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3456778888899999999999999999886533 77888999999999999999999999998874 446888999999
Q ss_pred HHHHhCCHHHHHHHHHHhhhh
Q 004922 442 ACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 442 ~~~~~g~~~~a~~l~~~~~~~ 462 (723)
++...|++++|...++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987653
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.79 E-value=0.00015 Score=60.16 Aligned_cols=111 Identities=19% Similarity=0.104 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..++..+...|++++|...|+...+.. +.+...+..+...|...|++++|...|+...+...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------------- 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-------------- 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--------------
Confidence 456778888889999999999999988753 24677888888899999999999999888765310
Q ss_pred cCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHH
Q 004922 302 AHDLKFTLEVYKNMQKLGVMAD----MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll 370 (723)
.. .++ ..++..+...+...|++++|.+.|+.+.. ..|+......+.
T Consensus 70 ---------------~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~ 119 (131)
T 1elr_A 70 ---------------EN--REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA------EHRTPDVLKKCQ 119 (131)
T ss_dssp ---------------HS--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHH
T ss_pred ---------------cc--chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCHHHHHHHH
Confidence 00 111 45666777888888999999999888877 345555444443
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.78 E-value=0.032 Score=54.05 Aligned_cols=116 Identities=9% Similarity=0.059 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHH
Q 004922 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL-VEQ 416 (723)
Q Consensus 340 ~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~ 416 (723)
+++++.+++.+... .+.+..+|+.-...+...+ .+++++.+++.+.+..+. |-.+|+.-...+...|. +++
T Consensus 90 l~~EL~~~~~~L~~-----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRV-----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHH
Confidence 56777777777663 2446667777777777777 488888888888887655 77888877777777777 588
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHhhhh
Q 004922 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEA--------------CQFDRAFRLFRSWTLS 462 (723)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~l~~~~~~~ 462 (723)
+++.++.+.+.. +-|...|+.....+.+. +.++++++.+......
T Consensus 164 el~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 164 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 888888888764 44666676666555554 3466777777766543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.00031 Score=57.50 Aligned_cols=94 Identities=10% Similarity=-0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (723)
+..+...+.+.|++++|...|++.... .+.+...|..+..++...|++++|+..|++.++..+. +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 334455566666777777766666652 1234556666666666666666666666666665433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004922 407 ACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~ 426 (723)
++.+.|++++|...+++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.0012 Score=55.99 Aligned_cols=30 Identities=13% Similarity=-0.131 Sum_probs=14.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 352 (723)
+...+..+..++...|++++|...|++...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.74 E-value=0.0003 Score=60.80 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~---- 397 (723)
..++..+...+...|++++|...+++........ ....-...+..+...+...|++++|...+++....... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3467778888999999999999999988753321 11111247888889999999999999999998653111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
...+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888999999999999999887653 211 12346777888899999999999999887653
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00073 Score=55.79 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TI 399 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 399 (723)
+..+...+...|++++|...|+.+... .|+. ..+..+..++...|++++|...|++.....+. + ..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHH
Confidence 334667788899999999999998873 2332 47777888899999999999999999876433 3 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 400 TWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 400 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+..+..++.+.|++++|...|+++.+.
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788888999999999999999998876
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.73 E-value=0.00037 Score=57.00 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (723)
.+..+...+.+.|++++|...|++.+...+. +...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4556677889999999999999999987544 78889999999999999999999999999874 446778889999999
Q ss_pred HhCCHHHHHHHHHHhhhh
Q 004922 445 EACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 445 ~~g~~~~a~~l~~~~~~~ 462 (723)
+.|++++|...+++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00038 Score=72.20 Aligned_cols=137 Identities=5% Similarity=-0.069 Sum_probs=100.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 229 REFGKKRDLVSALRAYDASKKH-----LS-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
..+..+|++++|+.++++..+. |. .| ...+++.|..+|...|++++|..++++..
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------ 378 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------ 378 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 3466789999999999887642 21 12 24679999999999999999999998654
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhc--CCccccHH-HHHHHHHHHHccCC
Q 004922 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYSTIVKVFADAKW 378 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--g~~~~~~~-~~~~ll~~~~~~g~ 378 (723)
+++........+-...+++.|...|...|++++|..++++...+... |.-.|++. +.+.+-.++...+.
T Consensus 379 --------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 --------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp --------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 44555544443334567889999999999999999999988764432 43344443 45666677778888
Q ss_pred HHHHHHHHHHHHH
Q 004922 379 WQMALKVKEDMLS 391 (723)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (723)
+++|+.+|..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.64 E-value=0.00072 Score=57.23 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-------CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-----G 393 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~ 393 (723)
.+......+.+.|++++|...|++...+.... ..+.+...|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455666777788888888888877742110 00001225666666666666666666666666653 0
Q ss_pred CCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004922 394 VTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ 426 (723)
Q Consensus 394 ~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 426 (723)
+.| +...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 122 23344 5555555566666666666555543
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.00071 Score=55.86 Aligned_cols=90 Identities=9% Similarity=-0.022 Sum_probs=57.1
Q ss_pred hccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004922 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (723)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (723)
...|++++|+..|++++... |++.. ...++..+...|...|++++|...|+
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~--p~~~~---------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELY--PNGVY---------------------------TPNALYWLGESYYATRNFQLAEAQFR 63 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SSSTT---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCcc---------------------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34688888888888777644 33220 00355556666677777777777777
Q ss_pred HHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 246 ASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 246 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+.+... .+ ..++..+..++...|++++|...|+.+.+.
T Consensus 64 ~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 64 DLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7665432 12 455666677777777777777777777665
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.61 E-value=0.00058 Score=70.94 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc----------------HHHHHHHHHHHHccCCHHHHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
....+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW------LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3556778888999999999999999999874 233 478899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhh
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~l~~~~~ 460 (723)
++.+..... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++. .+++.|.
T Consensus 341 ~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 341 DKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987644 78899999999999999999999999998863 335567888888888888888776 4555554
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=0.00014 Score=75.66 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=72.6
Q ss_pred ccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH---------HHHhhHHHHHhHHHhhhccCccchHHH
Q 004922 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF---------ASMLSLEMVASGIVKSIREGRIDCVVG 134 (723)
Q Consensus 64 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~ 134 (723)
..+|.. ...+..+...+.+.|++++|+..|++++... |... .......++.++...+.+.|++++|+.
T Consensus 262 ~~~~~~-a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 262 KEKLEQ-AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344555 7788899999999999999999999999884 3321 000112333455555667777777777
Q ss_pred HHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHh
Q 004922 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (723)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (723)
.|+++++ +.|+.. ..+.+....+...|++++|+..|+++++.. |++...+..+..++.
T Consensus 339 ~~~~al~--~~p~~~------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 339 CCDKALG--LDSANE------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHH--HSTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHH
T ss_pred HHHHHHh--cCCccH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7777766 334321 222222333334667777777776666543 444333333333333
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=6.6e-05 Score=78.44 Aligned_cols=111 Identities=10% Similarity=-0.094 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHH
Q 004922 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (723)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (723)
..|++++|++.|+++++.. |+....+..++.++.+.|++++|++.++++ |.+..++..+...|...|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3799999999999998865 777788888888888888888888877664 6666778888888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004922 243 AYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYE 280 (723)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 280 (723)
.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888776432 133344444444 677788888888777
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.0012 Score=66.31 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-----------CccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 393 (723)
..+..+...+.+.|++++|...|++........ ..+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677888899999999999999887621110 022345678899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004922 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (723)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (723)
.. +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67889999999999999999999999998863 3366677777777777766666543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00033 Score=56.88 Aligned_cols=89 Identities=15% Similarity=-0.000 Sum_probs=65.3
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (723)
..|++++|...|++..... ...+.+...+..+..+|...|++++|...|++.++..+. +...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3577888888888887620 000234557888888889999999999999998877544 5778888888899999999
Q ss_pred HHHHHHHHHHHc
Q 004922 416 QAMHLFEEMLQA 427 (723)
Q Consensus 416 ~a~~~~~~~~~~ 427 (723)
+|...+++....
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.53 E-value=0.00031 Score=73.35 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=92.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (723)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+.... +..+|..+..+|.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344566789999999999998873 2345778999999999999999999999999987544 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHH
Q 004922 410 NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (723)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~l~~~ 458 (723)
+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999988763 2233445445444 7888999999998874
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.52 E-value=0.0019 Score=56.02 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcC-----C--------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----V--------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 324 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g-----~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
...+......+.+.|++++|...|.+........ . .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456677888999999999999999988741100 0 01234578889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
...+. +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87544 6888999999999999999999999999886
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.51 E-value=0.00022 Score=58.04 Aligned_cols=88 Identities=8% Similarity=0.020 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH
Q 004922 375 DAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (723)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (723)
..|++++|+..|++.++.+. +-+...+..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45788999999999998641 2245678899999999999999999999999874 44678889999999999999999
Q ss_pred HHHHHHhhhhh
Q 004922 453 FRLFRSWTLSK 463 (723)
Q Consensus 453 ~~l~~~~~~~~ 463 (723)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887643
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.00052 Score=68.90 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH----------HHHhhHHHHHhHHHhhhccCccchHHHHHHHHh
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF----------ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 140 (723)
...+..++..+.+.|++++|+..|++++.. .+... ........+.++...+.+.|++++|+..+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456778899999999999999999999874 11100 011123344555556777777777777777777
Q ss_pred hcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHH
Q 004922 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (723)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (723)
+ +.|+.. ..+......+...|++++|+..|+++++.. |++...+..+...+...++.++
T Consensus 301 ~--~~p~~~------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 301 E--IDPSNT------KALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp T--TCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCchhH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 6 344322 122222233344677777777777776654 4444444444444444333333
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.41 E-value=0.0031 Score=67.04 Aligned_cols=172 Identities=8% Similarity=-0.108 Sum_probs=116.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCc----------cchHHHHHHHHhhcCCCcccccccc
Q 004922 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (723)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~ 153 (723)
...-++|+..+++++.. +|..++.+...+.+ +...|+ ++++++.++.+++. .|...
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~------l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y---- 107 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREV------LQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY---- 107 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHH------HHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCH----
Confidence 34446889999999999 78777665444333 333444 88999999999874 45332
Q ss_pred hhhhhHHHHHHhhccc--hHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCC-ChHHHHHHhhhC----CCCcchHHH
Q 004922 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (723)
Q Consensus 154 ~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~ 226 (723)
.++..-.-.+...| +++++++.++++++.. |.+...|+.-..++...+ .+++++++++.+ |.+..+|+.
T Consensus 108 --~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 108 --GTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp --HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred --HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 22222222233456 6799999999999866 778888888888877777 778888776664 566677777
Q ss_pred HHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004922 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (723)
Q Consensus 227 l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (723)
....+.+. +.++++++.++......+ -|..+|+.+...+.+.++.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 66665553 456788888877776432 356677777777766666433
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00038 Score=69.03 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=78.1
Q ss_pred HHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHH
Q 004922 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (723)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (723)
+......+...|++++|+..|+++++. .|+.. . +...|+.+++...+. ...+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~----~----------~~~~~~~~~~~~~l~-----------~~~~~ 234 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF----M----------FQLYGKYQDMALAVK-----------NPCHL 234 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH----H----------HTCCHHHHHHHHHHH-----------THHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch----h----------hhhcccHHHHHHHHH-----------HHHHH
Confidence 345566688999999999999999873 45322 0 111455555544332 12467
Q ss_pred HHHHHHhcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHhc
Q 004922 196 RIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDV-CGIC 269 (723)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~ 269 (723)
.++..+.+.+++++|+..++.+ |.+..++..+..+|...|++++|+..|+...+. .| +..++..+... ....
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence 7888888888888888877764 667788888999999999999999999988764 34 44556666555 3344
Q ss_pred CCHHHHHHHHHHHHhC
Q 004922 270 GDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 270 g~~~~a~~~~~~m~~~ 285 (723)
+..+++..+|..|...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 6777888888888765
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0034 Score=54.29 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA--------GV---------TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 425 (723)
...+......+.+.|++++|...|.+.+.. .. +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788899999999999999998864 11 1134678889999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
+.. +.+...|..+..+|...|++++|...|+.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 874 557889999999999999999999999987764
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00054 Score=67.95 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH------------------HHHHHHHHHHHccCCHHHHHHHHHH
Q 004922 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV------------------FTYSTIVKVFADAKWWQMALKVKED 388 (723)
Q Consensus 327 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~------------------~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (723)
+..+...+.+.|++++|...|++... ..|+. ..|..+..+|.+.|++++|+..+++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~------~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA------YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH------HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555566666666666666554 22332 2778888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhhhh
Q 004922 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~l~~~~~~~ 462 (723)
.+..... +...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+...|..+...
T Consensus 256 al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8876533 67888899999999999999999999887642 2233344444443 22345666777777776544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.31 E-value=0.0034 Score=53.08 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 004922 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP------NT-----ITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (723)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 427 (723)
...+......+.+.|++++|+..|++.++..+.. +. ..|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445666777889999999999999998764331 22 38999999999999999999999999875
Q ss_pred -CCCC-CHHHH----HHHHHHHHHhCCHHHHHHHHHHhhhhh
Q 004922 428 -GCEP-NSQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (723)
Q Consensus 428 -~~~~-~~~~~----~~ll~~~~~~g~~~~a~~l~~~~~~~~ 463 (723)
.+.| +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1144 45567 888889999999999999999887654
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.23 E-value=0.0059 Score=64.89 Aligned_cols=143 Identities=5% Similarity=-0.102 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASK 248 (723)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 248 (723)
...++|++.+++++... |+....|+.-..++...++... .. .....+++++..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~-----------~~---------~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKS-----------PE---------ESAALVKAELGFLESCL 100 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSC-----------HH---------HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccc-----------hh---------hhhhhHHHHHHHHHHHH
Confidence 34457788888888766 6665555554444433332000 00 00001566666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHH--HHhhhcC-ChHHHHHHHHHHHHcCCCcC
Q 004922 249 KHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNS--LMNVNAH-DLKFTLEVYKNMQKLGVMAD 323 (723)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~--ll~~~~~-~~~~a~~~~~~m~~~g~~~~ 323 (723)
+... -+..+|+.-..++.+.+ +++++++.++++.+... -+...|+. .+-...+ .++++++.++++++.. +-|
T Consensus 101 ~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n 177 (567)
T 1dce_A 101 RVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 177 (567)
T ss_dssp HHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCC
T ss_pred HhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCC
Confidence 5322 24555666555566666 55666666666665532 12333332 2222223 5566666666666554 346
Q ss_pred hhhHHHHHHHHHH
Q 004922 324 MASYNILLKACCL 336 (723)
Q Consensus 324 ~~~~~~ll~~~~~ 336 (723)
...|+.....+.+
T Consensus 178 ~saW~~r~~ll~~ 190 (567)
T 1dce_A 178 YSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh
Confidence 6666666555544
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.00059 Score=69.45 Aligned_cols=99 Identities=8% Similarity=-0.076 Sum_probs=73.0
Q ss_pred hhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc---CCCcccccccchhhhh
Q 004922 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFKLL 158 (723)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~~~~~l 158 (723)
...|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.+++++++. -..|+.. .+...+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---~~a~~l 385 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL---NVASMW 385 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH---HHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHH
Confidence 3468999999999999887533222334445778889999999999999999999998864 2344333 344455
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHh
Q 004922 159 KNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
.++...+...|++++|+.+++++++
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5555556668999999999988764
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.00037 Score=58.88 Aligned_cols=108 Identities=6% Similarity=-0.064 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.+.+++|++.+++.++.. |++...|..++.++...++++.+.... +.+++|+..|++.
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~A 72 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHHH
Confidence 588899999999998866 777777776666666555443222111 1256777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHhh
Q 004922 248 KKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 300 (723)
.+..+ .+..+|..+..+|...| ++++|++.|++..+. .|+...|...+..
T Consensus 73 L~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 73 LLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 76422 24566777777776653 778888888877765 4555555555544
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.14 E-value=0.0076 Score=50.38 Aligned_cols=110 Identities=8% Similarity=-0.047 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCCHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSAL 241 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~A~ 241 (723)
.+++++|+..|++..+.+.. ... ++..+.....++.|.++|++. ..+..+.+.|...|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM----FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT----THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH----hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 47889999999999887722 222 666666666777777777664 3445666677777776 67777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 004922 242 RAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 286 (723)
..|++..+. -+...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777664 345666667776666 667777777777766665
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00078 Score=53.80 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 004922 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (723)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 434 (723)
+...+..+...+...|++++|...|++.+...+. +...|..+..++.+.|++++|+..+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 3455666667777777777777777777765433 5666777777777777777777777777764 333 33
Q ss_pred HHHHHHHHHHHhCCHHHHH
Q 004922 435 CCNILLQACVEACQFDRAF 453 (723)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~ 453 (723)
.+..+..++...|+.+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444444444444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.08 E-value=0.0014 Score=52.84 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
..++..+...|...|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554321 2344555555555555555555555555544
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.00099 Score=67.98 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcC---CCccccccc
Q 004922 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---VAPLELFDG 152 (723)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~ 152 (723)
..+..+.++|++++|+.+++++++.....-...+...+..++++...|..+|++++|+.++++++..- ..|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--- 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP--- 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH---
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh---
Confidence 34556778899999999999999875332222334457788899999999999999999999887641 334333
Q ss_pred chhhhhHHHHHHhhccchHHHHHHHHHHHHh
Q 004922 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (723)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (723)
.+...+.++...+...|++++|+.+++++++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555556668999999999988764
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.01 E-value=0.0093 Score=45.12 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004922 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (723)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (723)
..+..+...+...|++++|...|++....... +...+..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555556666666666555544322 44555555556666666666666666555542 22344444444443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.96 E-value=0.0049 Score=49.49 Aligned_cols=78 Identities=14% Similarity=-0.065 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHH
Q 004922 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (723)
Q Consensus 308 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (723)
+++.|++..+.. +.+...+..+...|...|++++|...|++.... .+.+...|..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444455554433 234555666666666666666666666666552 12234456666666666666666666666
Q ss_pred HHHH
Q 004922 388 DMLS 391 (723)
Q Consensus 388 ~m~~ 391 (723)
+...
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.93 E-value=0.025 Score=47.10 Aligned_cols=110 Identities=14% Similarity=-0.028 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHc----cCCH
Q 004922 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (723)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~----~g~~ 379 (723)
++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+ . -+...+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~---~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE---L----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc---C----CCHHHHHHHHHHHHcCCCCCccH
Confidence 4455555565555554 22222 44444455556666666666554 1 244555555555555 5666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004922 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (723)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 428 (723)
++|...|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666554 44555566666665 566666666666666554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.93 E-value=0.0096 Score=45.05 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++.....+. +...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 3556777888899999999999999998873 2345678888899999999999999999999876533 566676
Q ss_pred HHHHHHHhc
Q 004922 403 SLINACANA 411 (723)
Q Consensus 403 ~li~~~~~~ 411 (723)
.+...+.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.88 E-value=0.0027 Score=49.62 Aligned_cols=68 Identities=13% Similarity=-0.034 Sum_probs=54.8
Q ss_pred cCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhh
Q 004922 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (723)
Q Consensus 65 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 141 (723)
.+|++ ...+..++..+.+.|++++|+..|++++.. +|.... ++..+...+...|++++|++.|++.++
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677 788999999999999999999999999999 555433 234455568999999999999999886
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.86 E-value=0.0038 Score=48.68 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=53.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
|.+..++..+...|...|++++|+..|++..+... .+..+|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567788888888888999999999988887542 35667888888899999999999888887653
No 209
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0041 Score=49.43 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=67.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-C----
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-N---- 397 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~---- 397 (723)
+...+..+...+...|++++|.+.|++.... .+.+...+..+..++...|++++|+..+++.+...... +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4556777888899999999999999998873 23466788889999999999999999999998764331 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 004922 398 TITWSSLINACANAGLVEQAMH 419 (723)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~a~~ 419 (723)
...+..+..++...|+.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHh
Confidence 3445555555555555444443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.82 E-value=0.0046 Score=52.17 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004922 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSL 404 (723)
Q Consensus 335 ~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~l 404 (723)
.+.+.+++|.+.++....+ -+.+...|+.+..++...++ +++|+..|++.++..+. +..+|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 3445667777777777663 23456667767777776655 45888888888876544 66778888
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004922 405 INACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (723)
Q Consensus 405 i~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (723)
..+|...| ++++|+..|++..+. .|+...|...+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88887764 789999999988876 6666666555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.032 Score=54.31 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=63.2
Q ss_pred chhhhhHHHHHHhh--ccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcC---C--ChH------HHHHHh---hh
Q 004922 153 SGFKLLKNECQRLL--DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK---P--DVN------LAIRYA---CI 216 (723)
Q Consensus 153 ~~~~~l~~~~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~------~A~~~~---~~ 216 (723)
..+..++++...+. ......+|+.+|+++++.. |+....+..+..++... + ... .+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 46666666544432 2455689999999999866 77766666555444310 0 000 011100 11
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.|.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 13333444444444444455555555555544432 34444444444444455555555555444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.33 E-value=0.035 Score=56.40 Aligned_cols=96 Identities=8% Similarity=0.042 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHhc---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCCh
Q 004922 233 KKRDLVSALRAYDASKKH---LSS---PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~---~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 305 (723)
..|++++|+.++++..+. -.. |+ ..+++.|..+|...|++++|..++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 457899999999887652 122 22 4679999999999999999999998755
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 004922 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (723)
Q Consensus 306 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 354 (723)
+++........+-...+++.|...|...|++++|..++++...+.
T Consensus 368 ----~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 368 ----KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp ----HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 345544433333345678899999999999999999999887743
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.33 E-value=0.053 Score=55.17 Aligned_cols=103 Identities=11% Similarity=-0.076 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHL---SSP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 299 (723)
.+..+.+.|++++|+.++++..+.. ..| ...+++.+..+|...|++++|+.++++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L---------------- 356 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM---------------- 356 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH----------------
Confidence 3455667789999999988877532 122 24578888888988999999998887654
Q ss_pred hhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 004922 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (723)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 355 (723)
+++........+....+++.|...|...|++++|..++++...+..
T Consensus 357 ----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 357 ----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp ----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3444444333333456788899999999999999999998876443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.19 E-value=0.14 Score=49.81 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=94.5
Q ss_pred ChHHHHHHhhhCCCCcchHHHHHHHHH--hc---CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 206 DVNLAIRYACIVPRADILFCNFVREFG--KK---RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIY 279 (723)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 279 (723)
...+..+.....|.+..+|...+.+.. .. .+..+|+.+|++..+. .|+ ...|..+..+|...
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------
Confidence 334445555666777788877665543 22 3457888899988874 353 45555544444300
Q ss_pred HHHHhCCCcccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCc
Q 004922 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (723)
Q Consensus 280 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~ 359 (723)
...+.. +...... ...+.+....+ . ..+.++.+|..+...+...|++++|...++++.. +
T Consensus 247 ---~~~~~~-~~~~~~~--------l~~a~~a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------L 306 (372)
T 3ly7_A 247 ---HSQHPL-DEKQLAA--------LNTEIDNIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGID------L 306 (372)
T ss_dssp ---HHHSCC-CHHHHHH--------HHHHHHHHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------H
T ss_pred ---hccCCC-chhhHHH--------HHHHHHHHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------c
Confidence 000000 0000000 01111111111 1 1245667777776666677888888888888887 4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004922 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (723)
Q Consensus 360 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 402 (723)
.|+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 307 n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 307 EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 467777778888888888888888888888876 34555553
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.94 E-value=0.031 Score=42.55 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=53.8
Q ss_pred CCcchhhhHHHHHHHHhhcCC---hHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 66 ~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
+|++ ...+..++.++.-.++ .++|..++++++.. +|.....++.++.. +...|++++|+..|+++++.
T Consensus 2 ~p~~-~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~------~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVT-ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIAND------HFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCC-HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTC
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhh
Confidence 4555 6777777777754444 79999999999999 88876665555444 88999999999999999984
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.31 Score=41.64 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (723)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 247 (723)
.|+++.|.++.+.+ ++...|..++......|+++.|++.|....+ +..+.-.|...|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 89999999988765 3566799999999999999999999998755 667777788888887777666665
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (723)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 282 (723)
...| -++.....+...|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5443 2344445566778898888888653
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.54 E-value=0.16 Score=47.28 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHhhHHHH
Q 004922 88 EEFAMIVESVVVSEGNVSKFASMLSLEMV 116 (723)
Q Consensus 88 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 116 (723)
.-.+.+++.++.. +|.+-..+.....+
T Consensus 49 P~~Lk~~e~Ll~~--~P~~~~Ll~~~a~l 75 (301)
T 3u64_A 49 PLVLKVYEALHLQ--NPAHRGLSLAVGRL 75 (301)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 4456667777777 66655554444333
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.41 E-value=0.074 Score=40.85 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
.+...|++++|...|++..+.... +.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555555555555555544322 334 5555555555556666666666555554
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.22 E-value=0.21 Score=41.62 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (723)
...+++-|.+..+.+. ++..+...+.+++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666777666655 67888888899999988 6779999999998864 35 2445556667789999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 004922 604 SLFEEMKHYQIQPNL 618 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (723)
++++.+.+ ++|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 99999987 57853
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.14 E-value=1.6 Score=40.73 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-C
Q 004922 529 YYRVKALMNEMRTVGLSPN---HISWTILIDACGGS-----GNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRS-K 597 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~-g 597 (723)
...|..++++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 46778888888874 565 45788888888884 9999999999999984 56 377777888888884 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 004922 598 RLKQAFSLFEEMKHYQIQ--PNLVTYITLLR 626 (723)
Q Consensus 598 ~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~ 626 (723)
+.++|.+++++..+.... |+....+.+-+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 999999999999987766 77665555443
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.06 E-value=0.51 Score=52.90 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=88.8
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHH
Q 004922 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (723)
Q Consensus 232 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (723)
...+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.- ....-+....++++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHH
Confidence 34567777665 33111 11222356666667777777776655321 111222334567777776
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004922 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (723)
Q Consensus 311 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 390 (723)
+.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 65432 4677888899999999999999999887754 2334444555666666655555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004922 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (723)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 424 (723)
..|. ++.-..+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4431 233344455667777777766554
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.04 E-value=0.52 Score=52.82 Aligned_cols=156 Identities=9% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHHHhhcCChHHHHH-HHHHHHHhcCC-hhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCcccccccchh
Q 004922 78 ASKLAKDGRLEEFAM-IVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (723)
Q Consensus 78 ~~~~~~~g~~~~A~~-~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 155 (723)
.......|++++|.. ++.. +. +.. +..++..+...|.+++|+++.+... ..+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~~~~~---------~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f 659 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VEGKDS---------LTKIARFLEGQEYYEEALNISPDQD------------QKF 659 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CCCHHH---------HHHHHHHHHHTTCHHHHHHHCCCHH------------HHH
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CCchHH---------HHHHHHHHHhCCChHHheecCCCcc------------hhe
Confidence 344456788888876 4411 11 111 1334445677888888876653111 122
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 004922 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (723)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (723)
...+. .|++++|.++.+. .++...|..++..+.+.++++.|++.|.++.+ +..+...|...|
T Consensus 660 ~~~l~-------~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----~~~l~~l~~~~~ 721 (814)
T 3mkq_A 660 ELALK-------VGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----LESLFLLHSSFN 721 (814)
T ss_dssp HHHHH-------HTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----HHHHHHHHHHTT
T ss_pred ehhhh-------cCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----hhhhHHHHHHcC
Confidence 22222 6999999887543 23456788888888888888888888877644 555666666667
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004922 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (723)
Q Consensus 236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 283 (723)
+.+...++-+.....|. ++....+|.+.|++++|++++.++.
T Consensus 722 ~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 76666655555544321 2333344566777777777776543
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.01 E-value=0.15 Score=39.02 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004922 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (723)
Q Consensus 330 ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 394 (723)
....+...|++++|...|+++... .+.+.. .+..+..+|...|++++|...|++.....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455677888899999988888763 233456 788888888888999999999988887643
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.75 E-value=0.35 Score=36.62 Aligned_cols=68 Identities=7% Similarity=-0.124 Sum_probs=47.6
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004922 218 PRADILFCNFVREFGKKRD---LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (723)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 286 (723)
|+++..+..+..++...++ .++|..+|++..+... -++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445566666666654443 6888888888777432 367777777788888888888888888887763
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.18 E-value=0.25 Score=38.41 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 547 NHISWTILIDACGGSGNVEGALQILKIMRED------GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
+..-+-.|...+.+.|++..|...|++..+. +-.+....+..+..+|.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3444556778888889999999988887752 1123566788888888899999999999888876 46654
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.63 E-value=1.5 Score=37.47 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHH
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~ 380 (723)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 346777777766554 3677777777777777777777777776543 233333455566665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004922 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 423 (723)
...++-+.....|- ++....++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444444331 34444455566777777777644
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.60 E-value=0.95 Score=35.01 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 323 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
+..-+..+...+.+.|++..|...|+...+...... -.+....+..+..++.+.|+++.|..++++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 444455667777777777777777777665432210 1123455666666677777777777777766654
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.20 E-value=0.73 Score=37.81 Aligned_cols=95 Identities=6% Similarity=-0.032 Sum_probs=54.2
Q ss_pred hhccCcc------chHHHHHHHHhhcCCCcccccccchhhhhHHHHHHhh---ccchHHHHHHHHHHHHhcCCCCccccc
Q 004922 123 SIREGRI------DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEMFVGLMEVLEEFRLPVKELDE 193 (723)
Q Consensus 123 ~~~~g~~------~~A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 193 (723)
+-..|++ ++..++|+++... +.|+. ......++..+..++ ..+++++|.++|+.++... .
T Consensus 23 lE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k---~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h--K----- 91 (161)
T 4h7y_A 23 LEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK---YGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC--K----- 91 (161)
T ss_dssp HHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG---GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC--T-----
T ss_pred HHHcCCCchhhHHHHHHHHHHHHHHc-CCccc---cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--H-----
Confidence 3444777 7888999998884 67764 234455555444432 3455566666665554321 0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 004922 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (723)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 253 (723)
.+ ..+|......=.++|++..|.+++......+..
T Consensus 92 ----------------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 ----------------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ----------------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ----------------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 00 233444455556667777777777776665443
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.53 E-value=1.7 Score=36.13 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=9.3
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 004922 372 VFADAKWWQMALKVKEDMLS 391 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~ 391 (723)
++.+.|++++|.+.++.+++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444444
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.39 E-value=4 Score=41.52 Aligned_cols=164 Identities=12% Similarity=0.153 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccH----
Q 004922 225 CNFVREFGKKRDLVSALRAYDASKKH--LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNI---- 291 (723)
Q Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~~~~---- 291 (723)
..|...|...|++.+|..++..+... |.-.. +..+...++.|...+++.+|..++..+.. ....|+.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44677777777888887777776532 11111 34566677777777888877777776532 2222321
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHc-CCCcChhhHHHHH----HHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHH
Q 004922 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILL----KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (723)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll----~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~ 366 (723)
..+...+....+++.+|-+.|.+.... ....|...+..++ ....-.+....-..+...... .. .-++...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~---~~-~~~~l~~~ 296 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN---DN-NLKKLESQ 296 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH---HS-SCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh---cc-cccccHHH
Confidence 223333344556777766666655432 1111222222111 111111111111122222221 11 23567778
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHC
Q 004922 367 STIVKVFADA--KWWQMALKVKEDMLSA 392 (723)
Q Consensus 367 ~~ll~~~~~~--g~~~~a~~~~~~m~~~ 392 (723)
..++.+|... .+++.....|......
T Consensus 297 ~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 297 ESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 8888888754 5788888888766543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.12 E-value=2 Score=34.30 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG---ALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (723)
+..+++-|......|. |+..+--.+.+++.+..+... ++.+++++...+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455666666655554 677777778899999887666 999999988753 23 2233445567889999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 004922 604 SLFEEMKHYQIQPNL 618 (723)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (723)
++++.+.+ ++|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 99999987 56753
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.87 E-value=2.3 Score=34.06 Aligned_cols=83 Identities=7% Similarity=-0.050 Sum_probs=64.2
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
++.......+-.+.........-++.+..+|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444444556666678888999999999999999654 2457888999999999999999999999999999
Q ss_pred CCCc
Q 004922 285 QNVT 288 (723)
Q Consensus 285 ~g~~ 288 (723)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 9874
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.00 E-value=2.3e-05 Score=77.37 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=129.8
Q ss_pred cCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004922 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (723)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 263 (723)
.....+.+..|+.++++.+..+++.+|+..|-+.. ++..|..++....+.|.+++-++.+....+.. .+...=+.|+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 33446677889999999999999999988876653 45778889999999999999998887776643 3344456888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh-hhc-CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChH
Q 004922 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341 (723)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 341 (723)
-+|++.++..+-.+.+. .||..-...+-. ++. |.++.|.-+|. +..-|..|...+.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHH
Confidence 99999998755433332 111111111110 000 11222221111 1122333334444455554
Q ss_pred HHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004922 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (723)
Q Consensus 342 ~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 421 (723)
.|.+.-. -..++.||-.+-.+|...+.+.-|...=-.+.-. | .-...++..|...|.+++.+.++
T Consensus 188 ~AVdaAr----------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 188 AAVDGAR----------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SSTTTTT----------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHH----------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHH
Confidence 4443211 1235556666666677666665554433333211 1 11223455566677777766666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004922 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (723)
+.-.... ....-+|+-|.-.|++- ++++-.
T Consensus 253 EaglglE-rAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 253 EAALGLE-RAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred HHHhCCC-chhHHHHHHHHHHHHhc-CHHHHH
Confidence 6555321 34555666665555543 344333
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.76 E-value=2.9 Score=41.63 Aligned_cols=119 Identities=8% Similarity=-0.073 Sum_probs=76.5
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCC--ccc--ccHHHHHHHHhcCCChHHHHHHhhhCCCCcchHHH
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV--KEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (723)
+...|..++.........|+.+.|...+++++...--+ .+. ..|..-.+.. ++.. -..+...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~------------l~~~--~~~a~~~ 176 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATA------------LVED--KVLAHTA 176 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHH------------HHHH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH------------HHHH--HHHHHHH
Confidence 33444445544444444688889999998887653211 111 0111110000 0000 0134556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 227 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
++..+...|++++|+..+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999999998887643 24788999999999999999999999998764
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.65 E-value=3.7 Score=40.92 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=59.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 439 (723)
...++..+...|+++++...+..+....+ .+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34566777889999999999999887653 3788999999999999999999999988765 4899988864443
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.56 E-value=5.1 Score=30.15 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 626 (723)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|.++|+-.+.. +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44455666666666666666666666666666666666666666655532 2333445555554
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.12 E-value=2.9 Score=35.07 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=51.4
Q ss_pred CcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 67 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
|..+.+.+..-+..+...|.|+.|+.+.+.++... .+|+..........+.....++..+|+|..|...|+++++.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33346667777888899999999999998876663 23443233333445556677788999999999999887653
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.44 E-value=40 Score=37.47 Aligned_cols=274 Identities=9% Similarity=-0.044 Sum_probs=134.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHHcCChHHHHHHHHHHHhhhh--cCCc-cccHHHHHHHHHHHHc
Q 004922 301 NAHDLKFTLEVYKNMQKLGVMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEA--KGVL-KLDVFTYSTIVKVFAD 375 (723)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~g~~-~~~~~~~~~ll~~~~~ 375 (723)
+.++.++++.+++.....+...+.. .-..+.-+....|..+++..++.....-.. .|.- .+....-..+.-+++-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 3456666666665544311011222 222233344555655566666555443110 0000 0111222233333333
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHhCCHH
Q 004922 376 AKW-WQMALKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC--VEACQFD 450 (723)
Q Consensus 376 ~g~-~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~ 450 (723)
.|. -+++.+.+..++...- +.. ..-.+|...+.-.|+.+....++..+... .+..+...+.-++ .-.|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 332 2455666666654321 111 11123334455667777777777776653 2333333344433 3567888
Q ss_pred HHHHHHHHhhhhhcccccCCcCCCchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHH--HHhh-
Q 004922 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCT- 527 (723)
Q Consensus 451 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~--~~~~- 527 (723)
.+..+++.+.... .|....-.++.. +|++
T Consensus 542 ~~~~li~~L~~~~------------------------------------------------dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 542 LADDLITKMLASD------------------------------------------------ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp GGHHHHHHHHHCS------------------------------------------------CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCC------------------------------------------------CHHHHHHHHHHHHHHhcCC
Confidence 8777777665421 222222222333 3443
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 004922 528 -DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSL 605 (723)
Q Consensus 528 -~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~ 605 (723)
+.....++++.+... ...+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|..+
T Consensus 574 Gn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 556666688877764 22233334444445555777777777777666543 44444444444555555554 678888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 606 FEEMKHYQIQPNLVTYITLLRARSRY 631 (723)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~ll~~~~~~ 631 (723)
+..+.. .+|..+-...+.++..-
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHH
Confidence 888864 35555544444444433
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.96 E-value=4.2 Score=32.41 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 361 LDVFTYSTIVKVFADAKWWQM---ALKVKEDMLSAG-VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 361 ~~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
++..+--.+..++++.....+ ++.+++.+...+ +.-.......+.-++.+.|++++|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 566666666667777665554 777777776653 1112334445666777788888888888777765
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.88 E-value=9.4 Score=31.07 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHh
Q 004922 615 QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLC 684 (723)
Q Consensus 615 ~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~ 684 (723)
.|+..+--.+..++.++.+.+..++++.+++++.+.+..-.....-.|--++.| |+..+|.++.+.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555566666666666666666666666654432122222333334444 6666666666644443
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.75 E-value=6.2 Score=29.72 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666666666677777777777777777777777777766553
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.66 E-value=4.7 Score=43.67 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhcCC-hHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccC-ccchHHHHHHHHhhc------C
Q 004922 72 DYYADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL------G 143 (723)
Q Consensus 72 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~------~ 143 (723)
..-..++..+...|+ ++.|+.+++++... +|..-... . ..++..+...+ +--+|+.++.+.++. .
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~--~---~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYY--K---TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHH--H---HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHH--H---HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 344556666666677 57899999999888 55432110 0 11111222222 223466666555431 1
Q ss_pred CCcccccc----cchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCCC
Q 004922 144 VAPLELFD----GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (723)
Q Consensus 144 ~~p~~~~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (723)
..+..... +....+|.--+.=+.+.|+++.|+++-++.+... |..+.+|..|+..|...++++.|+-.++.+|.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 12211100 0001111111111233677777777777766644 66666666666666666666666666666653
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.14 E-value=13 Score=30.59 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=27.7
Q ss_pred hcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004922 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMS 580 (723)
Q Consensus 527 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 580 (723)
++.++|.++|+.+.+.+-.- ...|-....--.+.|+++.|.+++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45566666666665432221 334444444444566666666666666655433
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.68 E-value=0.028 Score=56.03 Aligned_cols=208 Identities=9% Similarity=0.021 Sum_probs=131.5
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccccc
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 150 (723)
+..|..|+.++.+.|++.+|+..|-++. +|+.|. .+|....+.|.+++-+..+..+.+..-.|. .
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~---------eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--I 118 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYM---------EVVQAANTSGNWEELVKYLQMARKKARESY--V 118 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSS---------HHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--T
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHH---------HHHHHHHhCCCHHHHHHHHHHHHHHhcccc--c
Confidence 6678889999999999999987654332 667664 345557899999999999887776543442 1
Q ss_pred ccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHHHHhhhCC------------
Q 004922 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP------------ 218 (723)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------ 218 (723)
+ +.|+-++++ .++..+-.+++ ..++..-...++.-|-..|.++.|.-+|..++
T Consensus 119 D----teLi~ayAk---~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 119 E----TELIFALAK---TNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp T----HHHHHHHHT---SCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred H----HHHHHHHHh---hCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2 234444444 45443332222 12233445667777888888888777766542
Q ss_pred -------------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004922 219 -------------RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (723)
Q Consensus 219 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 285 (723)
.+..+|-.+-.+|...+.+.-|.-.--.+.-. ++ -...++..|-..|.+++-+.+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 24577888888888888888777665555432 22 2334666777888888888888876532
Q ss_pred CCcccHHHHHHHHhhhcC-ChHHHHHHHHH
Q 004922 286 NVTLNIYVFNSLMNVNAH-DLKFTLEVYKN 314 (723)
Q Consensus 286 g~~~~~~~~~~ll~~~~~-~~~~a~~~~~~ 314 (723)
. ......|+-|--.+++ ++++..+.++.
T Consensus 259 E-rAHmGmFTELaILYsKY~PeKlmEHlkl 287 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKFKPQKMREHLEL 287 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSSCTTHHHHHHTT
T ss_pred C-chhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 2455666666556664 45544444433
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.34 E-value=11 Score=43.73 Aligned_cols=217 Identities=11% Similarity=0.017 Sum_probs=127.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhh
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 301 (723)
.....++..+...+.++.+..+..... .+......+..+|..+|++++|.+.|.+.-. |+..+....
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------- 879 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------- 879 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------
Confidence 334457777888899988877654432 3555556677889999999999999986532 221110000
Q ss_pred cCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCcccc--HHHHHHHHHHHHccC
Q 004922 302 AHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAK 377 (723)
Q Consensus 302 ~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~--~~~~~~ll~~~~~~g 377 (723)
.. ..-+..+..... ..-..-|..++..+.+.+.++.+.+.-....+....+ .++ ...|..+.+.+...|
T Consensus 880 -~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 -AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp -SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHC
T ss_pred -hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhC
Confidence 00 011112221110 1123446778888888898888888777665532111 122 235888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHH-c-CCCCCHHHHHHHHHHH
Q 004922 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE------------QAMHLFEEMLQ-A-GCEPNSQCCNILLQAC 443 (723)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~------------~a~~~~~~~~~-~-~~~~~~~~~~~ll~~~ 443 (723)
++++|...+-.+..... -......++..+|..|..+ +..+++...-+ . .....+.-|..|-.-+
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~r 1030 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWR 1030 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhh
Confidence 99999999888876543 3566777777777766544 34444432221 1 1122223355555555
Q ss_pred HHhCCHHHH-HHHHHHhh
Q 004922 444 VEACQFDRA-FRLFRSWT 460 (723)
Q Consensus 444 ~~~g~~~~a-~~l~~~~~ 460 (723)
...|++.+| .-+|+.+.
T Consensus 1031 i~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1031 YKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHTTSCHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHHH
Confidence 666776655 45555544
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.31 E-value=41 Score=35.60 Aligned_cols=251 Identities=9% Similarity=-0.002 Sum_probs=142.0
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--
Q 004922 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY-- 272 (723)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 272 (723)
..-...+.+.+++.....++...|.+...-+....+....|+-.+|......+-..|. .....+..++..+.+.|..
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 3445666678889888888777566667777788888899998888887777665543 2344677788877766644
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHhhh--------------cCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHH
Q 004922 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVN--------------AHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACC 335 (723)
Q Consensus 273 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--------------~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~ 335 (723)
+....=++.+...|- ...-..+.... .++...+...... ..++... +...+.-+.
T Consensus 155 ~~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 233333344444331 11111111111 1112222111111 1222221 112223333
Q ss_pred HcCChHHHHHHHHHHHhhhhcCCccccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004922 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (723)
Q Consensus 336 ~~~~~~~A~~~~~~~~~~~~~g~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (723)
+ .+.+.|...+..... ...+.+... .+..+...+...+...++...+....... .+.......+....+.|+
T Consensus 227 r-~d~~~A~~~~~~~~~---~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQ---AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGD 300 (618)
T ss_dssp H-HCHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTC
T ss_pred h-cCHHHHHHHHHhhhh---ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCC
Confidence 3 377889999888764 222222221 23333334444553456666666655432 344444455555567799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
+..|...|..|..... ....-.--+..++...|+.++|..+|+.+..
T Consensus 301 ~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999998865321 2344344556677888999999999988764
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.78 E-value=8.7 Score=30.69 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004922 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (723)
Q Consensus 563 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 627 (723)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++|+-.+.. +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44556666666666777777777777777777777777777777766642 34445566666653
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.53 E-value=7.7 Score=42.01 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHH-
Q 004922 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYG---------SLHEVQQCLAVYQDMW- 648 (723)
Q Consensus 579 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------~~~~a~~a~~~~~~m~- 648 (723)
.+-+..-|..|.....+.+++++|.+.|+..... +-++..+..|+..|...+ +.+. ++...=++.
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~---il~~~ikl~~ 683 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDT---IISLLIKKIS 683 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHH---HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHH---HHHHHHHHHH
Confidence 4457778999999999999999999999998863 689999999999998876 5443 333333332
Q ss_pred ---HcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHhhhcccCChhhhHHHHHHHHHHhhh
Q 004922 649 ---KAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSA 708 (723)
Q Consensus 649 ---~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 708 (723)
+--..........|.+.+.+ |...---+ +. .....+.+.-.+.+.++.++.+-.
T Consensus 684 w~~RwY~efs~~l~~~l~kLi~~~G~~kirs~----I~--~~~~~~~~i~~l~~~~l~~~~~~~ 741 (754)
T 4gns_B 684 YDCRYYNYCQIFNLQLLEKLCNELGTHILRNK----IL--LQPSIGDEIMVMIDAMLAWIADLD 741 (754)
T ss_dssp HHHHTTBCCCHHHHHHHHHHHHHHCHHHHHHH----HH--TSTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhcccccCHHHHHHHHHHHHHhChHHhhHH----hh--ccccCCchHHHHHHHHHHHHHHhc
Confidence 21222344555544444444 42211111 11 112233455556688888877653
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.91 E-value=45 Score=38.64 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 004922 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (723)
Q Consensus 401 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~ 459 (723)
...++..+.+.+..+.+.++...+ +.++...-.+..+|...|++++|.+.|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 335666677777777776655433 445655556667888999999999999864
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.37 E-value=13 Score=27.91 Aligned_cols=84 Identities=8% Similarity=-0.085 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
...++|..+-+.+...+ + .-...+| ..+...|+|++|..+.+.+. .||...|-+|-....|-.+.+..-+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 35677777777766543 3 2233333 34678899999988877654 7899999988888888878777777
Q ss_pred HHHHHcCCCcChhhH
Q 004922 313 KNMQKLGVMADMASY 327 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~ 327 (723)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777766 3444444
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.72 E-value=11 Score=30.07 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhhhh
Q 004922 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (723)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~ 462 (723)
|.-+..+-++.+....+.|++.+....+++|-+.+++..|.++|+.++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45556666667766777788888888888888888888888888766543
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.44 E-value=15 Score=29.44 Aligned_cols=71 Identities=7% Similarity=0.033 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhcccccchHh
Q 004922 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLC 684 (723)
Q Consensus 614 ~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-g~~~~a~~~~~~~~~~ 684 (723)
-.|+..|--.+..+++++.+.+...+++.++.++.+.+..-....+=.|--++.+ |+..+|.++.+.++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3456666666666666666666666666666666665521112233333334444 6666666666644433
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.14 E-value=38 Score=32.09 Aligned_cols=26 Identities=19% Similarity=-0.077 Sum_probs=17.3
Q ss_pred ccccHHHHHHHHhcCCChHHHHHHhh
Q 004922 190 ELDEEFRIVQLCVNKPDVNLAIRYAC 215 (723)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (723)
++..+..++..+.+.+++.+|+.+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44556667777777777777776654
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.99 E-value=20 Score=28.84 Aligned_cols=138 Identities=12% Similarity=-0.037 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 233 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. -|. ..+++.......+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHH
Confidence 456666667766666552 34555555555444444444444444443221 000 0123333333333
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004922 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 392 (723)
-.+ ..+...+...++.+...|+-++-.+++..+.. ..+|+......+..+|.+.|+..++.+++.+.-+.
T Consensus 85 ~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 222 12344445555556666666665555555321 13455555555666666666666666666666555
Q ss_pred CC
Q 004922 393 GV 394 (723)
Q Consensus 393 ~~ 394 (723)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.48 E-value=16 Score=29.33 Aligned_cols=75 Identities=12% Similarity=-0.045 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 543 GLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 543 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
+-.|+..|--.+.+++.+..+ ..+++.+++++.+.+-.-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 344666666667778877765 457888898888754111244555666789999999999999999987 577643
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.18 E-value=12 Score=27.96 Aligned_cols=84 Identities=10% Similarity=-0.084 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHhhhcCChHHHHHHH
Q 004922 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (723)
Q Consensus 235 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (723)
...++|..+-+.+...+ + .-...+| ..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 35677777777766543 3 2233333 34678899999988776544 7899999998888888888888777
Q ss_pred HHHHHcCCCcChhhH
Q 004922 313 KNMQKLGVMADMASY 327 (723)
Q Consensus 313 ~~m~~~g~~~~~~~~ 327 (723)
.++...| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777766 4444444
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.73 E-value=14 Score=37.17 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=68.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCccc----HH
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---NVTLN----IY 292 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~~~----~~ 292 (723)
.+...++..|.+.|+++.|.+.|.++...-.. .-...+-.+++.+...+++..+...+.+.... +..++ ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46777889999999999999999998764322 23567888889999999999999998887543 32233 23
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHH
Q 004922 293 VFNSLMNVNAHDLKFTLEVYKNMQK 317 (723)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (723)
.|..++....+++..|-+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3455555555777777777766544
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.20 E-value=14 Score=31.05 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=66.1
Q ss_pred HhHHHhhhccCccchHHHHHHHHhhcC-CCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCC-CcccccH
Q 004922 117 ASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEE 194 (723)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 194 (723)
..-+..+...|.++.|+-+.+.+.... ..|+...-...+.++......+...|++..|...|++.++.... +......
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344556778999999999988866531 23332222233444444444555689999999999997653311 1111000
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (723)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 249 (723)
..+.. ....+. -+. .+.+.+.-..+...|...+++++|+.+++.+..
T Consensus 104 ~~~~~---~ss~p~----s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTGN---SASTPQ----SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc---cCCCcc----ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 000000 000 122334556677777888888888887777644
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.81 E-value=5.6 Score=36.47 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=42.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhcCCCccc
Q 004922 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (723)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 148 (723)
..+.+.|.+++|+..+..-++. +|........+ +..+|-.|+++.|..-++...+ +.|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~L------fqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSF------IELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHH------HHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 4566778888888888888888 66655443333 3447888888888888887776 45543
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.64 E-value=16 Score=35.46 Aligned_cols=75 Identities=7% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQCCNILL 440 (723)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (723)
....++.-|...|+.++|.+.++++....+. ......++..++-+.++ .+.+..++..+...|+-........+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4677888899999999999999998632222 23445556666665443 456778888888877655444433333
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.97 E-value=24 Score=26.44 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (723)
.++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+-+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 5667777666666543 22223333455667777777777765553 677777766544 366777777766666
Q ss_pred HHHCCCCCCHHHH
Q 004922 609 MKHYQIQPNLVTY 621 (723)
Q Consensus 609 m~~~g~~p~~~~~ 621 (723)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 65544 3444333
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.73 E-value=97 Score=31.20 Aligned_cols=154 Identities=8% Similarity=0.092 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHHc--CCCcC---hhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccH--HHHHHHHHHHHc
Q 004922 303 HDLKFTLEVYKNMQKL--GVMAD---MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--FTYSTIVKVFAD 375 (723)
Q Consensus 303 ~~~~~a~~~~~~m~~~--g~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~--~~~~~ll~~~~~ 375 (723)
|++.+|.+++..+... |.... ...+...++.|...+++..|..++.++..........|+. ..+...+..+..
T Consensus 151 g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~ 230 (445)
T 4b4t_P 151 GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH 230 (445)
T ss_dssp TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 6777787777777432 21111 3456667788888899999888888775322122122222 345666777778
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CC
Q 004922 376 AKWWQMALKVKEDMLSA-GVTPNTITWSSL----INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA--CQ 448 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~ 448 (723)
.++|.+|-..|.+.... ...-|...+... +.+..-.+....-..++.........++...|..++.+|... .+
T Consensus 231 e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~ 310 (445)
T 4b4t_P 231 KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 310 (445)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSS
T ss_pred hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhh
Confidence 88888888887777542 111122222211 111111111112222222222222234566777788777653 34
Q ss_pred HHHHHHHH
Q 004922 449 FDRAFRLF 456 (723)
Q Consensus 449 ~~~a~~l~ 456 (723)
++...+.|
T Consensus 311 ~~~~~~~~ 318 (445)
T 4b4t_P 311 WPIVQKTY 318 (445)
T ss_dssp HHHHHHHT
T ss_pred hHHHHHHH
Confidence 45544444
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.64 E-value=24 Score=26.48 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004922 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (723)
Q Consensus 529 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (723)
.++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+-+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4666666666665433 22222333445667777777777655543 677777665543 366777777666666
Q ss_pred HHHCCCCCCHHHH
Q 004922 609 MKHYQIQPNLVTY 621 (723)
Q Consensus 609 m~~~g~~p~~~~~ 621 (723)
+...| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 65544 3444333
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.62 E-value=53 Score=26.68 Aligned_cols=73 Identities=11% Similarity=-0.066 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004922 545 SPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (723)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 619 (723)
.|+..+--.+.+++.+..+ ..+++.+++++...+-.-.....-.+.-++.+.|++++|.++.+.+.+ ++|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 5677776667888887765 457888888888743211233444556788899999999999999987 577643
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.66 E-value=1.1e+02 Score=29.60 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004922 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELI 663 (723)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li 663 (723)
..+.++.=|...|+.++|.+.++++..-.+. .......+..++-+.++. ..+....++..+.+.|+-+.......+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~-~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4678888899999999999999999532111 133445555555444332 2345677888888888765544433333
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.84 E-value=63 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004922 376 AKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (723)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (723)
.+...++.++|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457799999999988766433 45678888888899999999999999998877773
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.93 E-value=90 Score=31.27 Aligned_cols=101 Identities=13% Similarity=-0.025 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHH-
Q 004922 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS---AGVTPNTIT- 400 (723)
Q Consensus 325 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~- 400 (723)
.+...+...|.+.|+++.|.++|.++...... ...-...+-..++.+...+++..+...+.+... .+..|+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 35667889999999999999999999874322 233456788888999999999999999988753 232232221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 401 -WSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 401 -~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
...-...+...+++..|...|-+....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111122234578899998888777654
No 268
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.23 E-value=38 Score=32.02 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 004922 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 434 (723)
...++.-|...|+.++|.+.++++...... ......++..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 566788888899999999999988532111 12344455555555433 456778888887776554433
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.08 E-value=93 Score=27.05 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=39.5
Q ss_pred cCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004922 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (723)
Q Consensus 337 ~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (723)
.+...++.++|..|.. +|.-.--+..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~---~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFN---KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHH---HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777776 44333455567777777777888888888888877776666
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.12 E-value=1.5e+02 Score=29.11 Aligned_cols=250 Identities=10% Similarity=0.075 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHH---
Q 004922 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA-KWWQMALKVKEDMLSAGVTPNTITW--- 401 (723)
Q Consensus 326 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--- 401 (723)
....|...|.+.|+.++..+++.........-.-.........++..+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445688889999999988888877654321110011233456677777653 3334434444433321000 11223
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHhhhhhcccccCCcCC
Q 004922 402 ---SSLINACANAGLVEQAMHLFEEMLQAGCEPN-----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473 (723)
Q Consensus 402 ---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~ 473 (723)
.-++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+.............+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p--- 176 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP--- 176 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH---
Confidence 2578899999999999999998887411211 23456667788899999999999987654321100000
Q ss_pred CchhhhhhhhhhccccccCCCCCcCCCCccccccccCCCcCHHHHHHHHHH-HhhcHHHHHHHHHHHHHc-C-C-CC---
Q 004922 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA-CCTDYYRVKALMNEMRTV-G-L-SP--- 546 (723)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~a~~l~~~m~~~-~-~-~p--- 546 (723)
.+..-...+..+++. ..+++..|...|-+..+. . . .|
T Consensus 177 ------------------------------------~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~ 220 (394)
T 3txn_A 177 ------------------------------------KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKAL 220 (394)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ------------------------------------HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHH
Confidence 001123345556666 567888887766665431 1 1 11
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHH-HH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004922 547 NHISWTILIDACGGSGNVEGALQILK-IM-REDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~-~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (723)
+...|..|..... ++..+-..++. .. ... ..|....+..++.+| ..+++.+..++++.... .+..|...
T Consensus 221 ~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l 291 (394)
T 3txn_A 221 TSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIV 291 (394)
T ss_dssp HHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHH
Confidence 1223433333222 22222222222 21 111 245666666677765 47788877777766543 25556553
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.97 E-value=1.4e+02 Score=28.56 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=86.3
Q ss_pred HHHhhcCCh---HHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHH----HhhcCCCcccccc
Q 004922 79 SKLAKDGRL---EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK----LNELGVAPLELFD 151 (723)
Q Consensus 79 ~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~----~~~~~~~p~~~~~ 151 (723)
+.....|++ =||.+.++......+....|.. ....+......+.+.|+...|.++-.. ..+.++.++..
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~e--AidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~-- 95 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAA--AVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA-- 95 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH--
T ss_pred HHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH--
Confidence 344455666 5666655554444322222222 223333444445666666665555432 33335555432
Q ss_pred cchhhhhHHHHHHhhccchHHHHHHHHHH----HHhcC-CCCcccccHHHHHHHHhcCCChHHHHHHhhhCCCCc-chHH
Q 004922 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEV----LEEFR-LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFC 225 (723)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 225 (723)
..+-++..+..... ..++ -..++++ -.+.+ .+.-++..+..++..|.+.+++.+|+..|-.-.++. ..+.
T Consensus 96 --~~~rL~~L~~~~~~-~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 96 --SRGKLLGCLRLFQP-GEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp --HHHHHHHHHTTSCT-TCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred --HHHHHHHHHHhCCC-CCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 33333333222211 1111 1222222 22222 223356677788889999999999988874332221 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004922 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (723)
Q Consensus 226 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 284 (723)
.++--+...+.. ..++...-.+++. |...++...|..+|+...+
T Consensus 172 ~mL~ew~~~~~~--------------~e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 172 RMEYEWYKQDES--------------HTAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTSCG--------------GGHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--------------ccHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 433333222210 0123333444444 5566788888777666543
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.76 E-value=92 Score=24.80 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+.+.|+-+.......
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 45678888888999999999988753111 123344455555555432 4567788888877776554444333
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.91 E-value=1e+02 Score=24.59 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC
Q 004922 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655 (723)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~ 655 (723)
.+.++.-|...|+.++|.+.++++..... -.......+..++-+.+.. +.+....++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~-~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHCCCcCH
Confidence 45566777777777777777777742111 1223334444444443322 23445567777776665543
No 274
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.22 E-value=18 Score=34.78 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004922 534 ALMNEMRTVGLSPNHIS--WTILIDACGGSGNVEGALQILKIMREDGMSPD---VVAYTTAIKVCVRSKRLKQAFSLFEE 608 (723)
Q Consensus 534 ~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (723)
.+.+.+.+.|..++... -..-+...+..|..+.+..+++. .|..++ ..-.+.|..+ ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 44455566776654321 11234445667777766555432 233332 2222344433 4567654 4455
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 004922 609 MKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (723)
Q Consensus 609 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~p~~ 656 (723)
+.+.|..+|..+ .+...++.|+.+ +++.+.++|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~-------iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS-------LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH-------HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH-------HHHHHHHCcCCCCC
Confidence 566787777544 344455667643 45557888888774
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.00 E-value=2.9e+02 Score=29.13 Aligned_cols=115 Identities=6% Similarity=-0.008 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004922 528 DYYRVKALMNEMRTVG-LSPNHI--SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (723)
Q Consensus 528 ~~~~a~~l~~~m~~~~-~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (723)
+.+.|..++....+.. +.+... ....+...+...+...++...+....... ++.....-.+....+.|+++.|.+
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 6777777777776432 222211 22223333334443556666666655432 333333333334446788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004922 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (723)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~ 648 (723)
.|+.|..... ....-.--+-+++...|+.++++. +|..+.
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~---~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKE---ILHQLM 346 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHH---HHHHHH
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHH---HHHHHh
Confidence 8888764321 123323334456667788666544 555554
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.39 E-value=3.6e+02 Score=30.06 Aligned_cols=189 Identities=12% Similarity=-0.033 Sum_probs=94.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHh----hhcCChHHHHHHHHHHHHcCC-------CcChhhHHHHHHHH
Q 004922 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTLEVYKNMQKLGV-------MADMASYNILLKAC 334 (723)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~~ 334 (723)
....|+.++++.+++...-.+-..+..+-..-+. +++|..+.+...+.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455666667666665443211123333322222 355655567777766654321 01111122222223
Q ss_pred HHcCC-hHHHHHHHHHHHhhhhcCCccccHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004922 335 CLAGN-TVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (723)
Q Consensus 335 ~~~~~-~~~A~~~~~~~~~~~~~g~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (723)
.-.|. -+++.+.+..+.. .. ..... .-.+|...++..|+-+....++..+.+.. .-+..-+..+.-++.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~---dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLY---ND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHH---TC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHh---cC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 22332 2344555544442 11 11111 12233334557788888888888777642 11222233333445577
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHhhh
Q 004922 412 GLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTL 461 (723)
Q Consensus 412 g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~l~~~~~~ 461 (723)
|+.+.+..+++.+.... .|....-. ++.-+|+..|+.....++++.+..
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 88888888888887642 23222222 233467788898777778887764
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.10 E-value=1.3e+02 Score=24.70 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 004922 587 TTAIKVCVRSKRLKQAFSLFEEM 609 (723)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m 609 (723)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444445555555544444
No 278
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=43.90 E-value=98 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004922 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGS-LHE-VQQCLAVYQDMWKAGYKANDTYLKELIEEWC 667 (723)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~-a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 667 (723)
|.++.++....|+.|+..+..-++..|...+- .++ +.+.+. | -.-..|..|+..+++.+=.-+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmA-F-sts~~g~~pT~enL~~FEhEvl 93 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIA-F-CTSTHKVGLTSEILNSFEHEFL 93 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHH-H-HHHHTCSBCCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH-H-HHhcCCCCCCHHHHHHHHHHHH
Confidence 34444444445666666666666666655553 111 111111 1 1124566666666666554444
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.60 E-value=25 Score=32.52 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=9.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 004922 596 SKRLKQAFSLFEEMKHYQIQP 616 (723)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p 616 (723)
.|......++++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 444333444445555544443
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.28 E-value=74 Score=26.27 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHH
Q 004922 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYVFNS 296 (723)
Q Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ 296 (723)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-+.......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 355688888889999999999998853111 123344555555555332 4567778888877776554444333
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.06 E-value=1.4e+02 Score=24.59 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004922 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (723)
Q Consensus 359 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (723)
.+-|..-....+..--.. +++.++|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445554433333322222 347888888888776433 45677778888888999999999998888877773
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.03 E-value=1.4e+02 Score=24.49 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004922 566 GALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (723)
Q Consensus 566 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (723)
++..+|..|..+|+--. +..|......+-..|++++|.++|+.-++.+-+|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37888888888765433 567778888888889999999999988888878743
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=39.93 E-value=2.2e+02 Score=26.06 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=71.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--cccHHHHHHHHhhhcCChH
Q 004922 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLK 306 (723)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~ 306 (723)
....+.|++++|+.....-.+.. +-|...-..++..++-.|+|++|..-++...+... .|-...|..+|.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567789999998887776642 24788888899999999999999999988877632 23345566665531
Q ss_pred HHHHHHHHHHHcCCCc-----ChhhHHHHHHHHH--HcCChHHHHHHHHHHHh
Q 004922 307 FTLEVYKNMQKLGVMA-----DMASYNILLKACC--LAGNTVLAQEIYGEVKH 352 (723)
Q Consensus 307 ~a~~~~~~m~~~g~~~-----~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~~ 352 (723)
..-.++..-+-.| ...-...++.+.. ..|+.++|.++-.++..
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222211111 1222333444433 45888888888777765
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.73 E-value=2.6e+02 Score=28.53 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Q 004922 550 SWTILIDACGGSGNVEGALQILKIMRED-GMSPDV--VAYT-TAIKVCVRSKRLKQAFSLFEEMKH 611 (723)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m~~ 611 (723)
.+|.++..|...+.++.|..+.++..-- .-.+|. .+|. .+...+.-.+++.+|.+.+....+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666677777777777776666410 000111 1222 123444556677777666666553
No 285
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.42 E-value=2.7e+02 Score=26.55 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 004922 547 NHISWTILIDACGGSGNVEGALQIL 571 (723)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~ 571 (723)
|......+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5556666777777777877777766
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.01 E-value=2e+02 Score=29.37 Aligned_cols=77 Identities=5% Similarity=-0.025 Sum_probs=49.0
Q ss_pred cccCCcchhhhHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHHHHhhHHHHHhHHHhhhccCccchHHHHHHHHhhc
Q 004922 63 VRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (723)
Q Consensus 63 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 142 (723)
++.|+......++.+++.|...+.+++|..+..+..-. ....... .....+..+.+.+..+++|.+|.+.|..+.+.
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~~~sn~-q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HTDVSSS-LEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TTTSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cccCCHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34555556677888888888888888888888876311 1110000 11233345566677888888888888887763
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.39 E-value=1.8e+02 Score=24.28 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004922 566 GALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (723)
Q Consensus 566 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (723)
.+..+|..|..+|+--. +..|......+-..|++.+|.++|+.-++.+-+|-...-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 36778888888765443 566777777788889999999999988888888864433
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.94 E-value=2e+02 Score=24.03 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004922 381 MALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (723)
Q Consensus 381 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (723)
++.++|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 47788999988876543 4567777888888999999999999998888777443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.44 E-value=49 Score=29.33 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCCCcccccccchhhhhHHHHHHhhccchHHHHHHHHHHHHhcCCCCcccccHHHHHHHHhcCCChHHHH
Q 004922 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (723)
Q Consensus 132 A~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (723)
-..++++..+. ..-+.. |..- .-+++.|..+++. .+++.++|.-|...++...-
T Consensus 96 L~~lLErc~~~-F~~~~r-YknD-~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~--------------------- 149 (223)
T 4aez_C 96 LVTLLERCTRE-FVRNPL-YKDD-VRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQES--------------------- 149 (223)
T ss_dssp HHHHHHHHHHH-TTTCGG-GTTC-HHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTB---------------------
T ss_pred HHHHHHHHHHH-hccccc-ccCC-HHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhH---------------------
Confidence 45666666654 111111 1111 1356667777663 35777888888877765322
Q ss_pred HHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 004922 212 RYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (723)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 254 (723)
...|......+...|++.+|..+|..-.+.+..|
T Consensus 150 ---------AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 150 ---------SIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 2456667777888899999999999988877766
No 290
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.93 E-value=1.4e+02 Score=21.18 Aligned_cols=57 Identities=9% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 608 EMKHYQIQPNLVTYITLLRARSRYG-SLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 608 ~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
.|.+.|++.+..-. .++..+...+ ..-.+. ++++.+.+.+...+..|....++.+.+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~---el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAE---DLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHH---HHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHH---HHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 34556666665443 3344444332 111122 366666666666666666666666665
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.03 E-value=3.5e+02 Score=25.37 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCcChhh--HHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004922 309 LEVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (723)
Q Consensus 309 ~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (723)
..+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-. ...-..|..-++.|.. .++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~----~~vn~~d~~G~TpL~~-A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH----IEINDTDSDGKTALLL-AVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT----CCTTCBCTTSCBHHHH-HHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC----CcccCcCCCCCCHHHH-HHHcCCHH----HH
Confidence 345555666665554321 1123445556677665554433110 0000112222233332 33455543 44
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (723)
+.+++.|..++..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 45556666665443 223334455543 44455666655553
No 292
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.98 E-value=1.7e+02 Score=21.78 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHH
Q 004922 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM-----KHYQIQPNLVTYITLL 625 (723)
Q Consensus 565 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~ll 625 (723)
-.|..+.+++...|+.|+..+..-++..|...+- + +.++.++. -..|..|+..+++.+=
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3577778888888888888888888887777664 2 44433332 2457777777766554
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.37 E-value=1.5e+02 Score=26.02 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHh
Q 004922 372 VFADAKWWQMALKVKEDMLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC--CNILLQACVEA 446 (723)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~ 446 (723)
..+..|+.+.+..+++.+.+.|..++.. -++ .+...+..|+.+ +++.+.+.|..++... -...+...+..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 3455566666666666555554433321 122 233334455554 3334444444332211 11223333455
Q ss_pred CCHHHHHHHHHH
Q 004922 447 CQFDRAFRLFRS 458 (723)
Q Consensus 447 g~~~~a~~l~~~ 458 (723)
|+.+-...+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 666555544443
No 294
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.10 E-value=1.1e+02 Score=20.33 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=18.8
Q ss_pred ccHHHHHHHHhhhcCChHHHHHHHHHHHHcCCCc
Q 004922 289 LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA 322 (723)
Q Consensus 289 ~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~g~~~ 322 (723)
.|......++..+.++.+.|...+-.|...+..|
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCC
Confidence 3455555555566666666666665555444333
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.58 E-value=2.9e+02 Score=31.07 Aligned_cols=105 Identities=9% Similarity=-0.016 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------------CC
Q 004922 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS--------------------SP 254 (723)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~ 254 (723)
..++..|...+.++.|.++....|.++..-+.++.+|...|++++|...|.+... |+ ++
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcccc
Confidence 3477788889999999999999998887777789999999999999999986531 11 11
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHhh
Q 004922 255 ---NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV 300 (723)
Q Consensus 255 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~ 300 (723)
...-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.++++
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~ 945 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKT 945 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 1235888999999999999999998888865222232 345555553
No 296
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.97 E-value=3.9e+02 Score=25.26 Aligned_cols=98 Identities=8% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHH----HHHcCCHHHHHHHH
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT--AIKV----CVRSKRLKQAFSLF 606 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~----~~~~g~~~~A~~~~ 606 (723)
-++++.+.+.|+.|...++..++..+++.=.++.+..+|+.+...|.+ ...+-+ ++.. .....+.++..+++
T Consensus 208 p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l 285 (331)
T 3qye_A 208 RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFI 285 (331)
T ss_dssp HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 357788888999999999999999999888899999999999987754 322222 2222 12234677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004922 607 EEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (723)
Q Consensus 607 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 635 (723)
+.... ..+......++.-.......+
T Consensus 286 ~~~~p---~~~~~di~~li~~A~~l~~s~ 311 (331)
T 3qye_A 286 KSTLP---NLGLVQMEKTINQVFEMDIAK 311 (331)
T ss_dssp HHTTT---CCCHHHHHHHHHHHHHCCCHH
T ss_pred HhhCC---CCCHHHHHHHHHHHHhCCchH
Confidence 66322 134455555665544444433
No 297
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.69 E-value=76 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004922 71 NDYYADMASKLAKDGRLEEFAMIVESVV 98 (723)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 98 (723)
...+...+..+.+.|+|++|+...+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 6678899999999999999998887664
No 298
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=25.56 E-value=3e+02 Score=23.10 Aligned_cols=110 Identities=9% Similarity=0.058 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHhhhhcCCccccHHHHHHHHHHHHccCCHHHHHH
Q 004922 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (723)
Q Consensus 305 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~~g~~~~a~~ 384 (723)
.+.|.++++.+...|..|+....... ...+....++++.....+ .--...++.++..+...+++.. ..
T Consensus 53 ~~HA~~l~~~i~~~gg~~~l~~i~~p------~~~~~~~~e~le~aL~~E-----~~v~~~~~~l~~~a~~~~D~~t-~~ 120 (173)
T 1s3q_A 53 LMHAMKMFDFVSERGGRVKLYAVEEP------PSEWDSPLAAFEHVYEHE-----VNVTKRIHELVEMAMQEKDFAT-YN 120 (173)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCSSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCHHH-HH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCChhH-HH
Confidence 45677888888777766653322110 112223344444444321 1123345666666655565532 23
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004922 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (723)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 427 (723)
+++.++...+. .......++..+.+.|....++-+|++-...
T Consensus 121 fle~~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~~ 162 (173)
T 1s3q_A 121 FLQWYVAEQVE-EEASALDIVEKLRLIGEDKRALLFLDKELSL 162 (173)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHHhh
Confidence 33333332111 2334444555555555444556666654443
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.74 E-value=2e+02 Score=25.46 Aligned_cols=51 Identities=8% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004922 566 GALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (723)
Q Consensus 566 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (723)
.+..+|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44556666665543322 4455555555666666666666666666555555
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.70 E-value=2.9e+02 Score=22.29 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=12.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 643 VYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 643 ~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
+++.+.+.+...+..|.-.-++.+.+
T Consensus 43 i~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 43 IYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 55555555544454444444444444
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.37 E-value=4.5e+02 Score=29.50 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=70.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------
Q 004922 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---------------- 285 (723)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---------------- 285 (723)
.....++..+...|.++-|.++... .+.+...-..+..+|...|++++|.+.|++.-..
T Consensus 811 ~~~~~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 811 DLVTELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred ccHHHHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence 3344477788888988877664433 2345555567788899999999999999863210
Q ss_pred ---CCcc---cHHHHHHHHhhhc--CChHHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcC
Q 004922 286 ---NVTL---NIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAG 338 (723)
Q Consensus 286 ---g~~~---~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~ 338 (723)
...+ ...-|.-++..+. +.++.+.++-+..+..--..|. ..|+.++++.+..|
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0122 2346666776644 6777777776666653222233 35677777776654
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.85 E-value=1.5e+02 Score=26.20 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCHHHHHHHH
Q 004922 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQC--CNILLQACVEACQFDRAFRLF 456 (723)
Q Consensus 405 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~l~ 456 (723)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 66 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH
Confidence 3445667888888888887776665443221 112334445667766544444
No 303
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.83 E-value=3.6e+02 Score=23.04 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCC-----C-CHH
Q 004922 587 TTAIKVCVRSKRLK---QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYK-----A-NDT 657 (723)
Q Consensus 587 ~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~a~~~~~~m~~~g~~-----p-~~~ 657 (723)
...+.-+.+.|+.+ +|-++.+.|.. .+...-.-+-. +...++.++.-.+++.+|...-.. . +..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~----~d~~r~e~~~k---~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~E 107 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQ----EDQKRMEKISK---RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSED 107 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhc----cchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccCccccHH
Confidence 34555566666544 66666666653 12222222222 233566677778888888864211 1 455
Q ss_pred HHHHHHHHH
Q 004922 658 YLKELIEEW 666 (723)
Q Consensus 658 ~~~~li~~~ 666 (723)
++..|...+
T Consensus 108 ll~eL~~~C 116 (186)
T 1oxz_A 108 LMKELYQRC 116 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 304
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=22.75 E-value=4.2e+02 Score=24.72 Aligned_cols=47 Identities=9% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004922 533 KALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (723)
Q Consensus 533 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 579 (723)
-++++.+.+.|+.|...++..++..+++.=.++.+.++|+.+...|.
T Consensus 174 p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 174 PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 35677788889999999999999999988889999999999998774
No 305
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.72 E-value=5.2e+02 Score=24.91 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHH
Q 004922 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (723)
Q Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l 297 (723)
...++.-|...|+.++|...++++.. |+ ...+..+..++-+.. .-+.+..++..+...|+-+......++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 45577778888888888888888753 32 223333333333221 124455666666666654444444433
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.55 E-value=3e+02 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 004922 552 TILIDACGGSGNVEGALQILKIM 574 (723)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~m 574 (723)
+.++.-|...|+.++|.+.++++
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 34444444445555555555444
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.32 E-value=4e+02 Score=23.04 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004922 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKR-----LKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (723)
Q Consensus 560 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 634 (723)
+..+.+.|+-++-+|++.| .|....=..++.+.-..|. ...|...++.....|..--...+...+--++.+-+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKS 104 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc
Confidence 4578888888888888888 6555554555556555554 334555566666667644444444444444444444
Q ss_pred HHHHHHHHHHHHHHHcC
Q 004922 635 HEVQQCLAVYQDMWKAG 651 (723)
Q Consensus 635 ~~a~~a~~~~~~m~~~g 651 (723)
..+-.|+.-..+..+.+
T Consensus 105 Ns~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 105 NSAYMALDAALADIREG 121 (204)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44544544443334433
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.97 E-value=3.2e+02 Score=22.21 Aligned_cols=62 Identities=6% Similarity=0.025 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 004922 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (723)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (723)
+.+.+.|+.++ .--..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 16 ~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34566777643 444566677777767778888999988876666777766666666665544
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.92 E-value=2.7e+02 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004922 643 VYQDMWKAGYKANDTYLKELIEEWCE 668 (723)
Q Consensus 643 ~~~~m~~~g~~p~~~~~~~li~~~~~ 668 (723)
+++.+.+.+...+..|.-.-++.+.+
T Consensus 40 i~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 40 VYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 56666666555565555555555554
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.30 E-value=5.6e+02 Score=24.34 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 004922 551 WTILIDACGGSGNVEGALQILKIMR 575 (723)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~m~ 575 (723)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777788888777777664
Done!