BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004923
(723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 528 bits (1359), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/632 (47%), Positives = 391/632 (61%), Gaps = 26/632 (4%)
Query: 75 PLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFN 134
P L ++ ++ L L +L DELR ++ +VS++ GH S LG +ELTVALHYV+N
Sbjct: 9 PTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYN 68
Query: 135 APKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSIS 194
P D+++WDVGHQ YPHKILTGRRDK+ T+RQ GL F R ESEYD GHSSTSIS
Sbjct: 69 TPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSIS 128
Query: 195 AGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPT 254
AG+G+AV + +G+ V VIGDGA+TAG A+EA N+AG + D +VILNDN + S+
Sbjct: 129 AGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDN-EXSISE 187
Query: 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS 314
VGAL++ L++L S + LRE K V + P+ EL + +E+ +G +
Sbjct: 188 N--------VGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIKGXVV 238
Query: 315 GSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKA 374
TLFEELG YIGPVDGH+V L+ L+ ++ K GP +H+ T+KGRGY AEK
Sbjct: 239 PG--TLFEELGFNYIGPVDGHDVLGLITTLKNXRDLK--GPQFLHIXTKKGRGYEPAEKD 294
Query: 375 ADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNL 434
+H V KFDP++G KSS SY+ F + L A D + AI A G+G
Sbjct: 295 PITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVE 354
Query: 435 FLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPV 494
F R+FP R FDV IAEQHAVTFAAGLA G KP AIYS+F+QRAYDQV+HDV +QKLPV
Sbjct: 355 FSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPV 414
Query: 495 RFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF 554
FA+DRAG+VGADG TH G+FD++++ C+P V+ PSDE E + T +D PS
Sbjct: 415 LFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAV 474
Query: 555 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLR 614
RYPRGN +GVEL P K L +GKG + GE++A+L +GT L A + L
Sbjct: 475 RYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGT-----LXPEAAKVAESLN 526
Query: 615 LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLAQDGLLDGTVKWR 673
T+ D RF KPLD ALI A SHE L+TVEE +I GG GS V + L V
Sbjct: 527 ATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGVNEVLXAH---RKPVPVL 583
Query: 674 PLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 705
+ LPD +I G+ + A+ GL + A +
Sbjct: 584 NIGLPDFFIPQGTQEEXRAELGLDAAGXEAKI 615
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/638 (42%), Positives = 377/638 (59%), Gaps = 26/638 (4%)
Query: 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVF 133
TPLLD I+ P +K LS +L L +ELR +++ S+ G HL SSLG +++ ALHYV
Sbjct: 10 TPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVL 69
Query: 134 NAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSI 193
++P+DRIL+DVGHQ Y HKILTGRRD+M +++ G+SGFTK SESE+D GH+STS+
Sbjct: 70 DSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSL 129
Query: 194 SAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLP 253
+ LGMA+ RD +G+ +V AVIGDG++T G A A+N G + M+++LNDN ++S+
Sbjct: 130 TNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN-EMSIS 188
Query: 254 TATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI 313
VGA++ + LQ + +E K + + P+ + ++ R
Sbjct: 189 EN--------VGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFF 240
Query: 314 SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEK 373
+ F +G+ Y+GPVDGHNV +LV +LE + + GP ++H+VT KG+G YAE
Sbjct: 241 DPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLD--GPTILHIVTTKGKGLSYAEA 298
Query: 374 AADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN 433
+HG AKFDPATG+ SSA S++ F EA+ A+ D + AM G+GL
Sbjct: 299 DPIYWHGPAKFDPATGEYVPSSA--YSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLV 356
Query: 434 LFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLP 493
F R P R DVGIAE+ AVT AAG+A +G++P AIYS+F+QRAYDQV+HDV ++ L
Sbjct: 357 EFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLN 416
Query: 494 VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSC 553
V F +DRAG+VGADG TH G FD++F+ +P + + P D AEL M+ A D P
Sbjct: 417 VTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFA 475
Query: 554 FRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGL 613
RYPRGN V P L+ G+ L G+ V +L G A+ L A+ L G
Sbjct: 476 IRYPRGNTAQV---PAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG- 531
Query: 614 RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKW 672
V +ARF KPLD ++R + LITVE+ + +GGFG V++ L L TV
Sbjct: 532 ---VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN-LHPTV-- 585
Query: 673 RPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710
R L +PD + +H + A+AG+ I TV LG
Sbjct: 586 RVLGIPDEFQEHATAESVHARAGIDAPAI-RTVLAELG 622
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 153/683 (22%), Positives = 253/683 (37%), Gaps = 138/683 (20%)
Query: 91 IRELKQLADELRADVIFNVSKTG-GHLGSSLGVIELTVAL-----HYVFNAPK----DRI 140
++ LK A+ LR I + G GH S E+ L Y P+ DR
Sbjct: 8 LQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRF 67
Query: 141 LWDVGHQ------TYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSIS 194
+ GH + + ++ + + L G ++ D TG +
Sbjct: 68 VLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLG 126
Query: 195 AGLGMA-VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLP 253
A GMA G+ V ++GDG ++ G +EAM A D +V + D
Sbjct: 127 AACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILD------- 179
Query: 254 TATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI 313
++RL + P P+ ++D Y +
Sbjct: 180 -----------------INRLGQSDP----------------APLQH---QMDIYQKRC- 202
Query: 314 SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEK 373
E G + I VDGH+V++L + K+ P I T KGRG E
Sbjct: 203 --------EAFGWHAI-IVDGHSVEELCKAFGQAKHQ----PTAIIAKTFKGRGITGVED 249
Query: 374 AADKYHG-------VAKFDPATGKQFKS-------------------SARTQSYTTY--- 404
+ +HG + Q +S + R S +Y
Sbjct: 250 K-ESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVG 308
Query: 405 --------FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTF 456
+ +AL ++A+ T +F + P R + IAEQ+ V+
Sbjct: 309 DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSI 368
Query: 457 AAGLACEGLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGS 514
A G A PFC+ +++F RA+DQ+ + + + G+ +G DGP+
Sbjct: 369 AVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGEDGPSQMAL 427
Query: 515 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVELPPGNKGI 573
D+ +P V PSD V AA + + CF R R + N
Sbjct: 428 EDLAMFRSVPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY----NNNE 481
Query: 574 PLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI 631
+VG+ +++++ ++V ++G G + LAA+ LL+ + + V D KPLD LI
Sbjct: 482 DFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLI 541
Query: 632 RSLAKSHE-VLITVE----EGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGS 686
A++ + ++TVE EG IG S V + + G+ TV + +R G
Sbjct: 542 LDSARATKGRILTVEDHYYEGGIGEAVSSAV--VGEPGI---TVTHLAV---NRVPRSGK 593
Query: 687 PADQLAQAGLTPSHIAATVFNIL 709
PA+ L G+ IA V ++
Sbjct: 594 PAELLKMFGIDRDAIAQAVRGLI 616
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 139/624 (22%), Positives = 230/624 (36%), Gaps = 130/624 (20%)
Query: 91 IRELKQLADELRADVIFNVSKTG-GHLGSSLGVIELTVAL-----HYVFNAPK----DRI 140
++ LK A+ LR I + G GH S E+ L Y P+ DR
Sbjct: 10 LQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRF 69
Query: 141 LWDVGHQ------TYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSIS 194
+ GH + + ++ + + L G ++ D TG +
Sbjct: 70 VLSKGHAAPILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLG 128
Query: 195 AGLGMA-VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLP 253
A GMA G+ V ++GDG ++ G +EAM A D +V + D
Sbjct: 129 AACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILD------- 181
Query: 254 TATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI 313
++RL + P P+ ++D Y +
Sbjct: 182 -----------------INRLGQSDP----------------APLQH---QMDIYQKRC- 204
Query: 314 SGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEK 373
E G + I VDGH+V++L + K+ P I T KGRG E
Sbjct: 205 --------EAFGWHAI-IVDGHSVEELCKAFGQAKHQ----PTAIIAKTFKGRGITGVED 251
Query: 374 AADKYHG-------VAKFDPATGKQFKS-------------------SARTQSYTTY--- 404
+ +HG + Q +S + R S +Y
Sbjct: 252 K-ESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVG 310
Query: 405 --------FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTF 456
+ +AL ++A+ T +F + P R + IAEQ+ V+
Sbjct: 311 DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSI 370
Query: 457 AAGLACEGLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGS 514
A G A PFC+ +++F RA+DQ+ + + + G+ +G DGP+
Sbjct: 371 AVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGEDGPSQMAL 429
Query: 515 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVELPPGNKGI 573
D+ +P V PSD V AA + + CF R R + N
Sbjct: 430 EDLAMFRSVPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY----NNNE 483
Query: 574 PLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI 631
+VG+ +++++ ++V ++G G + LAA+ LL+ + + V D KPLD LI
Sbjct: 484 DFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLI 543
Query: 632 RSLAKSHE-VLITVE----EGSIG 650
A++ + ++TVE EG IG
Sbjct: 544 LDSARATKGRILTVEDHYYEGGIG 567
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 37/281 (13%)
Query: 408 ALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC 462
AL E E D+ VV + +G G+ L+ R P R D + E + FA G+A
Sbjct: 60 ALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAM 119
Query: 463 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV--------GADGPTHC 512
GLKP I + F+ D++++ + KL R + +A LV G H
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI--AKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS 177
Query: 513 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-------RYPRGNGIGVE 565
S + F+ P +VV+ PS ++ A DD P F R PR E
Sbjct: 178 NSPEAIFVHT-PGLVVVMPSTPYNAKGLLKAAIRGDD-PVVFLEPKILYRAPRE-----E 230
Query: 566 LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 625
+P G+ + E+GK R+ EG+ V L+ YG V L A+ ++++ + V D + P
Sbjct: 231 VPEGDYVV--EIGKARVAREGDDVTLVTYGAVVHKALEAAERVKAS---VEVVDLQTLNP 285
Query: 626 LD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGL 665
LD +++S++K+ ++I + GG G+ V +A+ L
Sbjct: 286 LDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKAL 326
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 492
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122
Query: 493 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 552
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 553 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 610
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 611 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647
G+ V + R +P+D I + L+TVE G
Sbjct: 241 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 277
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 492
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 51 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 110
Query: 493 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 552
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 111 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 168
Query: 553 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 610
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 169 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 228
Query: 611 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647
G+ V + R +P+D I + L+TVE G
Sbjct: 229 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 265
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 123/280 (43%), Gaps = 29/280 (10%)
Query: 408 ALIAEAEVDKDVVAIHAAMGGGTGLNL----FLRRF-PTRCFDVGIAEQHAVTFAAGLAC 462
AL E D VV + +G G+ L L+++ P R D ++E V A G+A
Sbjct: 13 ALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAA 72
Query: 463 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH---------C 512
GL+P I ++ ++ +DQ+V V KL R + P+
Sbjct: 73 HGLRPVAEIQFADYIFPGFDQLVSQV--AKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHS 130
Query: 513 GSFDVTFM--ACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRG--NGIGVELPP 568
S + F+ A L + V P D L AA D+ P F P+ + E+P
Sbjct: 131 QSPEAHFVHTAGLKVVAVSTPYDAKGLLK----AAIRDEDPVVFLEPKRLYRSVKEEVPE 186
Query: 569 GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH 628
+ +P +GK + EG+ + L+ YGT + L A+A L G+ V D R P D+
Sbjct: 187 EDYTLP--IGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDY 244
Query: 629 -ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 667
A++ S+AK+ V++ + F S V +A+D LLD
Sbjct: 245 EAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAED-LLD 283
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 492
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 51 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 110
Query: 493 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 111 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 166
Query: 552 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 609
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 167 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 224
Query: 610 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 666
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 225 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 282
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 492
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 52 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 111
Query: 493 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 112 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 167
Query: 552 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 609
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 168 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 225
Query: 610 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 666
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 226 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 283
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 492
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEXGFAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPV 122
Query: 493 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 552
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 553 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 610
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELXYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 611 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647
G+ V + R +P D I + L+TVE G
Sbjct: 241 EGVECEVINXRTIRPXDXETIEASVXKTNHLVTVEGG 277
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 36/250 (14%)
Query: 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKL------- 492
+R FD I+E V A G+ GL+P I ++ + A DQ+V ++ +
Sbjct: 53 SRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFI 112
Query: 493 -PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551
P+ M G + G TH S + F VM PS+ + ++ + DD P
Sbjct: 113 APLTLRMPCGGGIYG-GQTHSQSPEAMFTQVCGLRTVM-PSNPYDAKGLLIASIECDD-P 169
Query: 552 SCFRYPRGNGIG------------------VELPPGNKGIPLEVGKGRILIEGERVALLG 593
F P+ G +P G +PL+ K I G V++L
Sbjct: 170 VIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVSVLT 227
Query: 594 YGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGF 652
YGT V A E +G+ V D R PLD ++ S+ K+ ++ E GF
Sbjct: 228 YGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGF 284
Query: 653 GSHVVQFLAQ 662
G+ +V + +
Sbjct: 285 GAELVSLVQE 294
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 42/253 (16%)
Query: 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD 499
+R FD I+E V A G GL+P I ++ + A DQ+V + +L R A +
Sbjct: 52 SRVFDAPISESGIVGTAVGXGAYGLRPVVEIQFADYFYPASDQIVS--EXARLRYRSAGE 109
Query: 500 -----------RAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 548
G+ G G TH S + F + + PS+ + ++ + D
Sbjct: 110 FIAPLTLRXPCGGGIYG--GQTHSQSPEAXFTQVC-GLRTVXPSNPYDAKGLLIASIECD 166
Query: 549 DRPSCFRYPRGNGIG------------------VELPPGNKGIPLEVGKGRILIEGERVA 590
D P F P+ G +P G +PL+ K I G V+
Sbjct: 167 D-PVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVS 223
Query: 591 LLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSI 649
+L YGT V A E +G+ V D R PLD ++ S+ K+ ++ E
Sbjct: 224 VLTYGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRT 280
Query: 650 GGFGSHVVQFLAQ 662
GFG+ +V + +
Sbjct: 281 CGFGAELVSLVQE 293
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 464 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGSFDVTFMA 521
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 522 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 560
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVET-AVAWTYAVAHQHPSCLIFSRQN 567
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 72 PPTP-LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVAL 129
PP P LD+ + + M S +A+ +RA + V + GH G +G+ E+ VAL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 130 ---HYVFN------APKDRILWDVGHQT---YPHKILTGRR---DKMHTMRQTDGLS--- 171
H N A +DR + GH + Y LTG +++ RQ +
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 172 ---GFTKRSESEYDCFGTGHSSTSISAGLGMAVGR----------DLKGRKNNVVAVIGD 218
G T E+ G G ++ +GMA+G D K ++ +GD
Sbjct: 142 PEYGITPGVETTTGPLGQG-----LANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGD 196
Query: 219 GAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 252
G + G ++EA + AG L + ++ L D+ +S+
Sbjct: 197 GXLMEGISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 464 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGSFDVTFMA 521
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 522 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 560
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVET-AVAWTYAVAHQHPSCLIFSRQN 567
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 72 PPTP-LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVAL 129
PP P LD+ + + M S +A+ +RA + V + GH G +G+ E+ VAL
Sbjct: 23 PPVPRFLDSFS-GLDMTTSSPASTTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVAL 81
Query: 130 ---HYVFN------APKDRILWDVGHQT---YPHKILTGRR---DKMHTMRQTDGLS--- 171
H N A +DR + GH + Y LTG +++ RQ +
Sbjct: 82 WSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQLHSKTPGH 141
Query: 172 ---GFTKRSESEYDCFGTGHSSTSISAGLGMAVGR----------DLKGRKNNVVAVIGD 218
G T E+ G G ++ +GMA+G D K ++ +GD
Sbjct: 142 PEYGITPGVETTTGPLGQG-----LANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGD 196
Query: 219 GAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 252
G + G ++EA + AG L + ++ L D+ +S+
Sbjct: 197 GCLMEGISHEACSLAGTLKLNKLIALYDDNGISI 230
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 504 VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG 563
+G DGPTH + + PN+ V+ P+D E F+ A + P+ R +
Sbjct: 461 LGEDGPTHQPVEHLXSLRAXPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTR-QAVP 519
Query: 564 VELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTV 617
+ P +G+ + G +L +E + L+ G+ V L A ALL G+R+ V
Sbjct: 520 LLSPEKARGL---LRGGYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRV 572
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 464 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRF--AMDRAGLVGADGPTHCGSFDVTFMA 521
G+KP+ + F + + + L K PV + D GL G DGPTH V +
Sbjct: 427 GIKPYGGTFLVFSDYSRNAIRXSA-LXKQPVVHVXSHDSIGL-GEDGPTHQPIEHVPSLR 484
Query: 522 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPP--GNKGIPLEVGK 579
+PN+ V P+D E A D PS R N L P + + +
Sbjct: 485 LIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQN-----LXPVVQTQHQVANIAR 539
Query: 580 GRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVA 618
G L++ ++ ++ G+ V+ + + E G++L VA
Sbjct: 540 GGYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 186 TGHSSTSISAGLGMAVGR----------DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY 235
TG ++ +G A+G DLK ++ +GDG + G ++EA + AG
Sbjct: 115 TGPLGQGVANAVGXALGEKLLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGT 174
Query: 236 LDSDMIVILNDNKQVSL 252
L + +V D+ +S+
Sbjct: 175 LGLNKLVAFWDDNNISI 191
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 496 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 554
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 439 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 495
Query: 555 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 611
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 496 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 550
Query: 612 GLRLTV 617
G V
Sbjct: 551 GFACNV 556
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 90 SIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIE-LTVALHYVFNAPK-------DRI 140
+I+ L++ A+ LR V K GH G+ LG+ + L+V +++ + PK DR+
Sbjct: 2 NIQILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRL 61
Query: 141 LWDVGHQT---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGL 197
++ GH + Y L+G + ++ L T E G ++ + G+
Sbjct: 62 VFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTP-GHPEISTLGVEIATGPLGQGV 120
Query: 198 GMAVGRDLKGRK-----------NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246
AVG +K + + + GDG + G +YEA + AG D +++ D
Sbjct: 121 ANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYD 180
Query: 247 NKQVSL 252
+ +S+
Sbjct: 181 SNNISI 186
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 257
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR--------- 204
Query: 258 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 314
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 205 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 255
Query: 315 GSGSTLFEELGLYYIGP 331
G G TL E L Y GP
Sbjct: 256 GEGPTLIETLCFRY-GP 271
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 257
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR--------- 203
Query: 258 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 314
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 204 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 254
Query: 315 GSGSTLFEELGLYYIGP 331
G G TL E L Y GP
Sbjct: 255 GEGPTLIETLCFRY-GP 270
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 496 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 554
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 442 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 498
Query: 555 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 611
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 499 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 553
Query: 612 GLRLTV 617
G V
Sbjct: 554 GFACNV 559
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 90 SIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIE-LTVALHYVFNAPK-------DRI 140
+I+ L++ A+ LR V K GH G+ LG+ + L+V +++ + PK DR+
Sbjct: 5 NIQILQEQANTLRFLSADXVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRL 64
Query: 141 LWDVGHQT---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGL 197
++ GH + Y L+G + ++ L T E G ++ + G+
Sbjct: 65 VFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTP-GHPEISTLGVEIATGPLGQGV 123
Query: 198 GMAVGRDLKGRK-----------NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246
AVG +K + + + GDG + G +YEA + AG D +++ D
Sbjct: 124 ANAVGFAXAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYD 183
Query: 247 NKQVSL 252
+ +S+
Sbjct: 184 SNNISI 189
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 257
G+A+G ++G+K + GDG + G Y+ +N AG + I ++ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR--------- 203
Query: 258 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 314
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 204 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 254
Query: 315 GSGSTLFEELGLYYIGP 331
G G TL E L Y GP
Sbjct: 255 GEGPTLIETLCFRY-GP 270
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 257
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+ +T
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR---FAAST- 209
Query: 258 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 314
PV + A + Q + VA G+ Q+ G M LA A V I+
Sbjct: 210 -----PVEKQTVAKTLAQ--------KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 255
Query: 315 GSGSTLFEELGLYYIGP 331
G G TL E L Y GP
Sbjct: 256 GEGPTLIETLCFRY-GP 271
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFIC 197
Query: 245 NDNK 248
+N+
Sbjct: 198 ENNR 201
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 442 RCFDVGIAEQHAVTFAAGL-ACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDR 500
R G+ E GL A +G+ PF + +F+ A V + A
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 501 AGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 560
+ VG DGPTH V + +PN+ V+ PSD+ E A A + P+ R N
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQN 522
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 464 GLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTF 519
GLK + ++S +++ A + L +LPV + + VG DGPTH +
Sbjct: 451 GLKTYGGTFFVFSDYLRPA----IRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAA 506
Query: 520 MACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE-VG 578
+ PN+ V+ P+D E A ++P+ R + +E G K E V
Sbjct: 507 LRAXPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLE---GAKDDTYEKVA 563
Query: 579 KGRILIEGER-----VALLGYGTAVQSCLAASALLESNGLRLTV 617
KG ++ + V LL G+ V + A L +G+ +V
Sbjct: 564 KGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASV 607
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 245 NDNK 248
+N+
Sbjct: 215 ENNR 218
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 245 NDNK 248
+N+
Sbjct: 215 ENNR 218
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 245 NDNK 248
+N+
Sbjct: 215 ENNR 218
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 245 NDNK 248
+N+
Sbjct: 215 ENNR 218
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 244
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 197
Query: 245 NDNK 248
+N+
Sbjct: 198 ENNR 201
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 438 RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPV 494
RF R +G A+ L G P+CA +++ +M+ A + L + V
Sbjct: 418 RFGVREHGMG-----AICNGIALHSPGFVPYCATFFVFTDYMRGA----MRISALSEAGV 468
Query: 495 RFAM--DRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 552
+ M D GL G DGPTH + +PN++++ P+D E A RPS
Sbjct: 469 IYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 527
Query: 553 CFRYPR 558
R
Sbjct: 528 ILALSR 533
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 318 STLFEELGLYYIGPVDGHN-VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYP 369
ST FE LG + I +G+ DD+ A ++E K T P LI V T G G P
Sbjct: 215 STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSP 266
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 447 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 504
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 407 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 465
Query: 505 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 560
G DGPTH V + PNM P D+ E D P+ R N
Sbjct: 466 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 521
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 100/302 (33%), Gaps = 81/302 (26%)
Query: 95 KQLADELRADVIFNVSKT-GGHLGSSLGVIELTVALHYVF---------NAPKDRILWDV 144
K+LA+ +RA + V K GH G+ +G+ ++ L F A +DR +
Sbjct: 4 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 63
Query: 145 GHQT---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFG----TGHSSTSISAGL 197
GH + Y LTG M ++ L T G TG I+ +
Sbjct: 64 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAV 123
Query: 198 GMAVGRDLKGRKNN----------VVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247
GMA+ + N A +GDG M G ++E + AG L ++ D+
Sbjct: 124 GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDD 183
Query: 248 KQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307
+S +D
Sbjct: 184 NGIS-----------------------------------------------------IDG 190
Query: 308 YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 367
+ G + + FE G + I +DGH+ + +EE + T P L+ T G G
Sbjct: 191 HVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFG 249
Query: 368 YP 369
P
Sbjct: 250 SP 251
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 447 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 504
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 408 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 466
Query: 505 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 560
G DGPTH V + PNM P D+ E D P+ R N
Sbjct: 467 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQN 522
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 103/307 (33%), Gaps = 91/307 (29%)
Query: 95 KQLADELRADVIFNVSKT-GGHLGSSLGVIELTVALHYVF---------NAPKDRILWDV 144
K+LA+ +RA + V K GH G+ +G+ ++ L F A +DR +
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSN 64
Query: 145 GHQT---YPHKILTGRRDKMHTMRQTDGLS---------GFTKRSESEYDCFGTGHSSTS 192
GH + Y LTG M ++ L G+T E+ G G
Sbjct: 65 GHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQG----- 119
Query: 193 ISAGLGMAVGRDLKGRKNN----------VVAVIGDGAMTAGQAYEAMNNAGYLDSDMIV 242
I+ +GMA+ + N A +GDG M G ++E + AG L ++
Sbjct: 120 IANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLI 179
Query: 243 ILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA 302
D+ +S
Sbjct: 180 AFYDDNGIS--------------------------------------------------- 188
Query: 303 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362
+D + G + + FE G + I +DGH+ + +EE + T P L+ T
Sbjct: 189 --IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKT 245
Query: 363 EKGRGYP 369
G G P
Sbjct: 246 IIGFGSP 252
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ-----RAYDQVVHDVDLQKLPVRF 496
R G+ E +G+ G P A +F+Q R ++ +D+ + V +
Sbjct: 433 RTLHFGVREHAMGAILSGIVLHG--PTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYV-W 489
Query: 497 AMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556
D GL G DGPTH ++ + +P + V+ P+D E + T A
Sbjct: 490 THDSIGL-GEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILA---------- 538
Query: 557 PRGNGIG-VELPPGNKGIPLEVGK--------GRILIE------GER--VALLGYGTAVQ 599
R NG G V L +G+P+ G G +L + GE V L+ G+ VQ
Sbjct: 539 -RRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQ 597
Query: 600 SCLAASALLESNGL 613
+AA LL N +
Sbjct: 598 LAVAAQTLLADNDI 611
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 499
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 500 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 559 GN 560
N
Sbjct: 529 QN 530
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 101 LRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFNA-----------PKDRILWDVGHQT 148
+R + VSK GH G+ LG + A H +++ +DR + GH
Sbjct: 15 IRILAVDTVSKANSGHPGAPLG---MAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAV 71
Query: 149 ---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFG----TGHSSTSISAGLGMAV 201
Y LTG + ++Q L T E++ G TG IS +GMA+
Sbjct: 72 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTP-GHPEFELPGVEVTTGPLGQGISNAVGMAM 130
Query: 202 GR-DLKGRKNN---------VVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQV 250
+ +L N +GDG + G + EA + AG+L ++I I +DNK
Sbjct: 131 AQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK-- 188
Query: 251 SLPTATLDG 259
T+DG
Sbjct: 189 ----ITIDG 193
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 499
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 408 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 466
Query: 500 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 467 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 526
Query: 559 GN 560
N
Sbjct: 527 QN 528
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 101 LRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFNA-----------PKDRILWDVGHQT 148
+R + VSK GH G+ LG + A H +++ +DR + GH
Sbjct: 13 IRILAVDTVSKANSGHPGAPLG---MAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAV 69
Query: 149 ---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFG----TGHSSTSISAGLGMAV 201
Y LTG + ++Q L T E++ G TG IS +GMA+
Sbjct: 70 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTP-GHPEFELPGVEVTTGPLGQGISNAVGMAM 128
Query: 202 GR-DLKGRKNN---------VVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQV 250
+ +L N +GDG + G + EA + AG+L ++I I +DNK
Sbjct: 129 AQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK-- 186
Query: 251 SLPTATLDG 259
T+DG
Sbjct: 187 ----ITIDG 191
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 442 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 499
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 500 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 559 GN 560
N
Sbjct: 529 QN 530
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 34/178 (19%)
Query: 101 LRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFNA-----------PKDRILWDVGHQT 148
+R + VSK GH G+ LG + A H +++ +DR + GH
Sbjct: 15 IRILAVDTVSKANSGHPGAPLG---MAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAV 71
Query: 149 ---YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFG----TGHSSTSISAGLGMAV 201
Y LTG + ++Q L T E++ G TG IS +GMA+
Sbjct: 72 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTP-GHPEFELPGVEVTTGPLGQGISNAVGMAM 130
Query: 202 GR-DLKGRKNN---------VVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNK 248
+ +L N +GDG + G + EA + AG+L ++I I +DNK
Sbjct: 131 AQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK 188
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 612 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK 671
G+++T + F KPL ++ SLA + +L G + G G+ + +L + L G+V
Sbjct: 252 GIKVTEGNKTFWKPLTTKIV-SLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVV 310
Query: 672 WRPLVLP 678
P LP
Sbjct: 311 GLPGTLP 317
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 275 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG--------L 326
+S RPL+ +R KG ++ G + + +VD AR +I+G + +ELG L
Sbjct: 323 KSGRPLKSIRARLKGKEGRLRGNL--MGKRVDFSARTVITGDPNLSLDELGVPRSIAKTL 380
Query: 327 YYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382
Y V +N+ L E V+N P +++ + G E+ +YH A
Sbjct: 381 TYPETVTPYNIYQL---QELVRNGPDEHPGAKYIIRDTG------ERIDLRYHKRA 427
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 215 VIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRL 274
++G G G A+EA+ A + ++L D + A G + A+++ L
Sbjct: 27 MVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQG----LSAINTYLGDN 82
Query: 275 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-YYIGPVD 333
++ +R +R G+ ++ +++L VD+ LFEE GL +I
Sbjct: 83 NADDYVRMVRTDLMGLVRE--DLIYDLGRHVDDSVH---------LFEEWGLPVWIKDEH 131
Query: 334 GHNVD 338
GHN+D
Sbjct: 132 GHNLD 136
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 299 HELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE----VKNTKTT 353
+E+ A++D R + I G + L + Y+G D H V + A +E +KN TT
Sbjct: 164 YEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPD-HGVPESAASFDELLSVIKNCVTT 222
Query: 354 GPVLIHVVTEKGR 366
P+L+H GR
Sbjct: 223 SPILVHCSAGIGR 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,897,400
Number of Sequences: 62578
Number of extensions: 959353
Number of successful extensions: 2279
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2187
Number of HSP's gapped (non-prelim): 79
length of query: 723
length of database: 14,973,337
effective HSP length: 106
effective length of query: 617
effective length of database: 8,340,069
effective search space: 5145822573
effective search space used: 5145822573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)