Query 004923
Match_columns 723
No_of_seqs 410 out of 2757
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 5E-149 1E-153 1220.3 61.1 621 74-712 2-625 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 3E-144 6E-149 1232.2 65.6 640 57-720 59-701 (701)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 2E-138 5E-143 1194.4 70.3 665 55-719 10-676 (677)
4 PLN02234 1-deoxy-D-xylulose-5- 100.0 2E-136 4E-141 1169.0 61.2 619 1-674 13-632 (641)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 8E-126 2E-130 1095.1 67.7 615 77-709 1-616 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 3E-125 5E-130 1094.1 68.2 629 71-714 3-632 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 2E-117 5E-122 1019.2 62.9 577 76-709 2-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 2E-112 5E-117 982.7 61.3 576 71-708 1-579 (580)
9 KOG0523 Transketolase [Carbohy 100.0 2E-102 5E-107 847.0 45.5 605 74-716 2-632 (632)
10 PTZ00089 transketolase; Provis 100.0 7.5E-97 2E-101 860.0 54.9 540 93-711 5-660 (661)
11 PRK12753 transketolase; Review 100.0 2.1E-96 5E-101 854.5 55.2 542 95-709 5-663 (663)
12 PLN02790 transketolase 100.0 8.6E-96 2E-100 850.2 57.4 535 101-709 1-654 (654)
13 PRK05899 transketolase; Review 100.0 1E-93 2.2E-98 834.2 55.8 546 89-709 3-624 (624)
14 PRK12754 transketolase; Review 100.0 9.2E-93 2E-97 818.6 56.1 544 94-709 4-663 (663)
15 TIGR00232 tktlase_bact transke 100.0 2.3E-92 5E-97 821.4 55.3 539 96-709 2-653 (653)
16 COG0021 TktA Transketolase [Ca 100.0 4E-88 8.7E-93 744.3 52.1 546 91-710 3-663 (663)
17 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.4E-85 3E-90 764.4 56.8 598 36-711 30-860 (889)
18 PRK09405 aceE pyruvate dehydro 100.0 5.9E-84 1.3E-88 750.9 56.9 597 37-711 37-863 (891)
19 PRK13012 2-oxoacid dehydrogena 100.0 2.8E-82 6.1E-87 740.2 58.6 596 36-711 44-868 (896)
20 PF13292 DXP_synthase_N: 1-deo 100.0 1.3E-73 2.9E-78 576.9 14.8 270 77-362 1-270 (270)
21 COG3958 Transketolase, C-termi 100.0 3.2E-67 7E-72 531.1 33.9 304 398-709 6-312 (312)
22 TIGR00759 aceE pyruvate dehydr 100.0 3.5E-63 7.7E-68 569.5 50.4 596 36-711 30-857 (885)
23 CHL00144 odpB pyruvate dehydro 100.0 2E-57 4.3E-62 488.3 35.2 306 399-713 4-327 (327)
24 PRK09212 pyruvate dehydrogenas 100.0 2.6E-56 5.6E-61 480.4 35.8 305 399-711 4-325 (327)
25 PLN02683 pyruvate dehydrogenas 100.0 5.1E-56 1.1E-60 481.7 36.7 309 398-712 26-353 (356)
26 PRK11892 pyruvate dehydrogenas 100.0 7.4E-55 1.6E-59 485.1 36.6 306 397-709 140-462 (464)
27 PTZ00182 3-methyl-2-oxobutanat 100.0 2.1E-54 4.5E-59 468.9 34.2 307 397-709 33-355 (355)
28 COG0022 AcoB Pyruvate/2-oxoglu 100.0 8.1E-52 1.8E-56 422.0 28.2 304 399-710 2-323 (324)
29 PRK05261 putative phosphoketol 100.0 2.9E-48 6.4E-53 447.6 51.3 541 73-709 31-741 (785)
30 COG2609 AceE Pyruvate dehydrog 100.0 4E-46 8.7E-51 409.2 42.6 609 72-711 55-859 (887)
31 COG3959 Transketolase, N-termi 100.0 5.2E-47 1.1E-51 370.4 23.3 222 89-365 5-243 (243)
32 PRK09404 sucA 2-oxoglutarate d 100.0 3.8E-42 8.2E-47 405.7 43.0 488 112-662 213-884 (924)
33 KOG0524 Pyruvate dehydrogenase 100.0 1.1E-43 2.4E-48 352.7 23.6 306 397-709 33-358 (359)
34 PF00456 Transketolase_N: Tran 100.0 1.3E-44 2.8E-49 387.6 15.6 233 95-383 2-262 (332)
35 cd02007 TPP_DXS Thiamine pyrop 100.0 9.4E-44 2E-48 356.3 20.6 195 113-368 1-195 (195)
36 cd02017 TPP_E1_EcPDC_like Thia 100.0 2.1E-42 4.6E-47 370.6 24.2 229 96-380 6-334 (386)
37 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.1E-39 4.5E-44 380.5 38.3 418 185-662 313-890 (929)
38 cd02012 TPP_TK Thiamine pyroph 100.0 2.3E-39 5E-44 338.5 23.1 228 99-382 1-245 (255)
39 KOG0525 Branched chain alpha-k 100.0 3.6E-38 7.8E-43 308.8 16.2 305 397-710 39-361 (362)
40 cd07033 TPP_PYR_DXS_TK_like Py 100.0 4E-34 8.6E-39 277.1 19.2 154 404-558 2-156 (156)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 1.9E-31 4.1E-36 260.3 16.8 152 404-558 2-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 2.6E-31 5.7E-36 263.1 11.5 163 398-561 2-175 (178)
43 smart00861 Transket_pyr Transk 100.0 1.1E-27 2.4E-32 235.0 18.4 158 401-559 2-167 (168)
44 COG3957 Phosphoketolase [Carbo 99.9 3.6E-24 7.7E-29 238.1 31.5 486 74-644 43-694 (793)
45 COG1071 AcoA Pyruvate/2-oxoglu 99.9 4.6E-24 9.9E-29 227.5 21.4 225 88-371 23-269 (358)
46 CHL00149 odpA pyruvate dehydro 99.9 1.2E-22 2.5E-27 220.1 23.5 228 82-371 10-267 (341)
47 PLN02269 Pyruvate dehydrogenas 99.9 2E-22 4.3E-27 219.0 21.2 197 113-371 59-267 (362)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 5.7E-22 1.2E-26 211.4 22.5 201 111-370 23-235 (293)
49 PLN02374 pyruvate dehydrogenas 99.9 8.4E-22 1.8E-26 218.1 21.8 197 113-371 115-333 (433)
50 PF00676 E1_dh: Dehydrogenase 99.9 1.2E-21 2.5E-26 209.2 17.7 205 111-372 21-234 (300)
51 TIGR03182 PDH_E1_alph_y pyruva 99.9 4.2E-21 9.1E-26 206.4 20.9 201 112-371 30-242 (315)
52 PF02780 Transketolase_C: Tran 99.9 5.1E-23 1.1E-27 191.8 3.7 123 578-701 1-124 (124)
53 PRK07119 2-ketoisovalerate fer 99.9 4.7E-20 1E-24 200.8 25.0 251 435-710 43-350 (352)
54 TIGR03181 PDH_E1_alph_x pyruva 99.9 4.7E-20 1E-24 200.2 24.5 222 88-372 20-255 (341)
55 TIGR03336 IOR_alpha indolepyru 99.8 1.1E-19 2.4E-24 211.6 24.8 245 441-708 46-335 (595)
56 PRK08659 2-oxoglutarate ferred 99.8 5E-19 1.1E-23 194.2 25.0 216 439-660 47-346 (376)
57 PRK09627 oorA 2-oxoglutarate-a 99.8 1.5E-18 3.3E-23 189.9 23.2 214 441-660 48-347 (375)
58 PRK09622 porA pyruvate flavodo 99.8 7.4E-18 1.6E-22 187.0 28.9 253 442-710 58-382 (407)
59 cd02011 TPP_PK Thiamine pyroph 99.8 9.8E-19 2.1E-23 176.8 15.4 167 144-369 2-209 (227)
60 PRK08366 vorA 2-ketoisovalerat 99.8 5.8E-17 1.3E-21 178.2 28.2 204 447-654 55-328 (390)
61 KOG0225 Pyruvate dehydrogenase 99.8 2.3E-18 5E-23 177.3 15.4 198 112-372 87-296 (394)
62 PRK08367 porA pyruvate ferredo 99.8 1.8E-16 3.8E-21 174.8 28.8 246 447-710 56-374 (394)
63 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 3.8E-17 8.3E-22 188.5 23.7 218 441-660 237-537 (562)
64 cd02016 TPP_E1_OGDC_like Thiam 99.7 5.9E-17 1.3E-21 167.9 15.9 204 113-371 12-254 (265)
65 PRK12270 kgd alpha-ketoglutara 99.6 9.4E-14 2E-18 160.5 30.5 421 193-679 625-1202(1228)
66 cd00568 TPP_enzymes Thiamine p 99.6 8.6E-15 1.9E-19 143.0 14.8 158 135-362 11-168 (168)
67 KOG1182 Branched chain alpha-k 99.5 6.7E-15 1.5E-19 150.4 7.1 130 186-370 192-325 (432)
68 PF09364 XFP_N: XFP N-terminal 99.5 7.2E-14 1.6E-18 147.5 13.9 217 73-370 29-288 (379)
69 cd02013 TPP_Xsc_like Thiamine 99.5 5.5E-13 1.2E-17 134.2 16.5 131 185-367 51-183 (196)
70 cd02004 TPP_BZL_OCoD_HPCL Thia 99.5 1E-13 2.2E-18 136.5 10.8 126 185-362 46-171 (172)
71 PRK06163 hypothetical protein; 99.5 5E-13 1.1E-17 134.7 15.8 123 185-369 55-179 (202)
72 cd03371 TPP_PpyrDC Thiamine py 99.5 2.3E-13 5.1E-18 135.9 12.2 121 185-367 46-167 (188)
73 cd02008 TPP_IOR_alpha Thiamine 99.5 3.4E-13 7.3E-18 133.7 12.4 127 185-362 49-176 (178)
74 cd03372 TPP_ComE Thiamine pyro 99.5 1.7E-12 3.6E-17 128.8 16.0 119 185-367 40-159 (179)
75 cd02001 TPP_ComE_PpyrDC Thiami 99.5 1.3E-12 2.9E-17 126.8 14.9 116 186-365 41-157 (157)
76 TIGR02176 pyruv_ox_red pyruvat 99.4 1.5E-11 3.3E-16 151.8 27.8 247 447-710 57-380 (1165)
77 COG0674 PorA Pyruvate:ferredox 99.4 8.9E-12 1.9E-16 136.5 22.4 205 447-655 53-327 (365)
78 cd02015 TPP_AHAS Thiamine pyro 99.4 6.3E-13 1.4E-17 132.7 11.8 128 185-366 48-177 (186)
79 cd02010 TPP_ALS Thiamine pyrop 99.4 2.6E-12 5.7E-17 127.2 14.4 127 184-364 45-171 (177)
80 cd02003 TPP_IolD Thiamine pyro 99.4 2.1E-12 4.6E-17 130.9 13.4 140 185-367 46-188 (205)
81 cd02006 TPP_Gcl Thiamine pyrop 99.4 2.3E-12 4.9E-17 130.4 12.3 140 185-366 55-197 (202)
82 cd02002 TPP_BFDC Thiamine pyro 99.4 4.2E-12 9.1E-17 125.7 13.1 129 185-362 48-178 (178)
83 TIGR03846 sulfopy_beta sulfopy 99.4 4.5E-12 9.8E-17 125.9 11.9 118 186-366 41-159 (181)
84 cd02014 TPP_POX Thiamine pyrop 99.4 4.6E-12 9.9E-17 125.6 11.6 127 185-365 49-175 (178)
85 cd02005 TPP_PDC_IPDC Thiamine 99.3 1.5E-11 3.2E-16 122.6 14.7 125 185-365 48-176 (183)
86 PF02775 TPP_enzyme_C: Thiamin 99.3 1.8E-12 4E-17 125.1 7.8 130 183-360 24-153 (153)
87 cd02009 TPP_SHCHC_synthase Thi 99.3 2.6E-12 5.6E-17 127.0 8.3 127 185-363 49-175 (175)
88 TIGR03297 Ppyr-DeCO2ase phosph 99.3 1.9E-11 4E-16 133.7 12.6 168 120-367 172-340 (361)
89 KOG0451 Predicted 2-oxoglutara 99.3 4.2E-10 9E-15 122.8 22.3 246 400-653 565-867 (913)
90 PRK06112 acetolactate synthase 99.3 6.3E-11 1.4E-15 138.4 17.1 129 185-366 435-563 (578)
91 COG0028 IlvB Thiamine pyrophos 99.3 1.4E-11 3.1E-16 141.8 10.5 128 185-365 406-533 (550)
92 cd06586 TPP_enzyme_PYR Pyrimid 99.2 1E-10 2.2E-15 112.5 13.7 125 432-558 26-154 (154)
93 PRK08322 acetolactate synthase 99.2 2.9E-10 6.4E-15 132.0 19.5 130 185-368 404-533 (547)
94 cd03375 TPP_OGFOR Thiamine pyr 99.2 3.8E-11 8.3E-16 120.6 10.3 134 187-364 51-185 (193)
95 COG4231 Indolepyruvate ferredo 99.2 1.7E-09 3.8E-14 121.6 23.9 249 441-712 58-356 (640)
96 TIGR02418 acolac_catab acetola 99.2 5.9E-11 1.3E-15 137.5 12.8 128 185-366 406-533 (539)
97 PRK08266 hypothetical protein; 99.2 5.5E-11 1.2E-15 137.9 12.3 130 185-367 400-529 (542)
98 PRK06546 pyruvate dehydrogenas 99.2 5.4E-11 1.2E-15 138.8 11.6 128 185-366 406-533 (578)
99 PRK07064 hypothetical protein; 99.2 5.2E-11 1.1E-15 138.2 11.1 127 187-366 405-531 (544)
100 cd03376 TPP_PFOR_porB_like Thi 99.2 8.7E-11 1.9E-15 121.5 11.5 139 186-363 61-200 (235)
101 PRK09124 pyruvate dehydrogenas 99.2 5.8E-11 1.2E-15 138.6 11.3 128 185-366 406-533 (574)
102 PRK08199 thiamine pyrophosphat 99.2 7.6E-11 1.6E-15 137.1 12.1 127 185-365 413-540 (557)
103 PRK06965 acetolactate synthase 99.2 8E-11 1.7E-15 137.7 12.1 129 185-366 435-565 (587)
104 PRK07586 hypothetical protein; 99.2 3E-10 6.5E-15 130.9 16.5 128 187-362 385-514 (514)
105 PRK05858 hypothetical protein; 99.2 1.1E-10 2.4E-15 135.3 12.7 128 185-366 405-533 (542)
106 PRK07524 hypothetical protein; 99.2 9.7E-11 2.1E-15 135.6 12.2 129 185-367 405-533 (535)
107 PRK11864 2-ketoisovalerate fer 99.2 1.7E-10 3.8E-15 122.0 12.9 142 184-364 66-208 (300)
108 PRK09107 acetolactate synthase 99.2 9.8E-11 2.1E-15 137.1 12.2 128 185-365 428-556 (595)
109 PRK06457 pyruvate dehydrogenas 99.2 9.1E-11 2E-15 136.2 11.5 127 185-364 394-520 (549)
110 PRK08978 acetolactate synthase 99.2 1.1E-10 2.3E-15 135.6 12.1 128 185-366 399-528 (548)
111 PRK08611 pyruvate oxidase; Pro 99.2 1.1E-10 2.3E-15 136.4 11.9 128 185-366 406-533 (576)
112 PLN02470 acetolactate synthase 99.2 1.3E-10 2.7E-15 136.0 12.2 137 185-366 424-560 (585)
113 PRK06725 acetolactate synthase 99.2 1.4E-10 2.9E-15 135.2 12.2 128 185-365 420-547 (570)
114 PRK09259 putative oxalyl-CoA d 99.2 5.8E-10 1.3E-14 130.1 17.4 128 185-367 422-550 (569)
115 PRK07979 acetolactate synthase 99.2 1.5E-10 3.2E-15 135.2 12.3 130 185-365 419-550 (574)
116 TIGR01504 glyox_carbo_lig glyo 99.2 1.2E-10 2.6E-15 136.2 11.6 141 185-366 416-558 (588)
117 PRK06456 acetolactate synthase 99.2 1.5E-10 3.3E-15 135.0 12.0 129 185-366 419-548 (572)
118 PRK08979 acetolactate synthase 99.1 1.6E-10 3.4E-15 134.9 12.0 129 185-365 419-548 (572)
119 PRK06154 hypothetical protein; 99.1 1.1E-10 2.3E-15 135.9 10.6 130 185-367 429-559 (565)
120 PRK07418 acetolactate synthase 99.1 1.5E-10 3.3E-15 136.1 11.8 129 185-366 432-562 (616)
121 TIGR03393 indolpyr_decarb indo 99.1 1E-10 2.2E-15 135.6 10.1 123 185-364 402-528 (539)
122 PRK06466 acetolactate synthase 99.1 1.8E-10 4E-15 134.4 12.3 130 185-366 421-551 (574)
123 PRK06048 acetolactate synthase 99.1 2E-10 4.3E-15 133.8 12.2 128 185-366 412-541 (561)
124 TIGR03254 oxalate_oxc oxalyl-C 99.1 1.2E-09 2.7E-14 127.0 18.6 126 185-366 415-541 (554)
125 CHL00099 ilvB acetohydroxyacid 99.1 2E-10 4.3E-15 134.3 12.0 130 185-365 428-557 (585)
126 PRK12474 hypothetical protein; 99.1 2.7E-10 5.8E-15 131.4 12.8 128 187-362 389-518 (518)
127 PRK06882 acetolactate synthase 99.1 2.2E-10 4.8E-15 133.8 12.2 130 185-366 419-549 (574)
128 PRK08527 acetolactate synthase 99.1 2.3E-10 4.9E-15 133.3 12.1 129 185-366 412-541 (563)
129 PRK08617 acetolactate synthase 99.1 1.7E-10 3.6E-15 134.1 10.9 129 185-367 412-540 (552)
130 PRK07710 acetolactate synthase 99.1 2.4E-10 5.2E-15 133.3 12.2 128 185-366 422-551 (571)
131 TIGR02720 pyruv_oxi_spxB pyruv 99.1 2.4E-10 5.3E-15 133.3 11.7 129 185-365 406-534 (575)
132 TIGR03457 sulphoacet_xsc sulfo 99.1 2.9E-10 6.2E-15 132.9 12.3 131 185-367 428-561 (579)
133 PRK07092 benzoylformate decarb 99.1 2.2E-10 4.8E-15 132.5 11.1 124 186-362 406-529 (530)
134 PRK08273 thiamine pyrophosphat 99.1 2.7E-10 5.8E-15 133.6 11.7 131 185-366 413-549 (597)
135 PRK07789 acetolactate synthase 99.1 2.4E-10 5.1E-15 134.4 11.3 134 185-365 445-578 (612)
136 PRK08155 acetolactate synthase 99.1 2.6E-10 5.7E-15 132.9 11.3 129 185-366 417-546 (564)
137 PRK07282 acetolactate synthase 99.1 2.8E-10 6E-15 132.6 10.9 127 185-365 416-543 (566)
138 PRK11269 glyoxylate carboligas 99.1 3.1E-10 6.6E-15 133.0 11.3 141 185-366 417-559 (591)
139 TIGR00118 acolac_lg acetolacta 99.1 3.6E-10 7.7E-15 131.6 11.5 129 185-366 410-539 (558)
140 PRK08327 acetolactate synthase 99.1 4.6E-10 1E-14 130.9 11.0 136 185-363 428-567 (569)
141 PRK06276 acetolactate synthase 99.1 5.5E-10 1.2E-14 130.7 11.7 127 185-365 417-545 (586)
142 PLN02573 pyruvate decarboxylas 99.1 4.4E-10 9.6E-15 131.1 10.6 123 185-364 426-553 (578)
143 PRK07449 2-succinyl-5-enolpyru 99.0 8.2E-10 1.8E-14 128.9 10.8 128 185-364 423-550 (568)
144 PRK07525 sulfoacetaldehyde ace 99.0 1.3E-09 2.9E-14 127.5 12.5 131 185-367 433-566 (588)
145 PRK05778 2-oxoglutarate ferred 99.0 1.4E-09 3E-14 115.9 10.3 133 187-363 70-203 (301)
146 PRK11869 2-oxoacid ferredoxin 99.0 1.2E-09 2.6E-14 115.1 9.6 135 187-364 60-194 (280)
147 cd02018 TPP_PFOR Thiamine pyro 99.0 1.5E-09 3.2E-14 112.6 10.1 140 185-363 62-203 (237)
148 PRK11866 2-oxoacid ferredoxin 99.0 2E-09 4.3E-14 113.4 10.8 134 186-363 58-192 (279)
149 KOG0450 2-oxoglutarate dehydro 99.0 4.6E-08 1E-12 109.6 21.4 241 409-653 659-963 (1017)
150 TIGR03394 indol_phenyl_DC indo 99.0 2.3E-09 4.9E-14 124.1 10.9 124 185-366 401-524 (535)
151 PRK09628 oorB 2-oxoglutarate-a 98.9 2.4E-09 5.1E-14 113.0 9.5 136 187-365 68-203 (277)
152 PRK11867 2-oxoglutarate ferred 98.9 5.6E-09 1.2E-13 110.8 10.5 134 187-364 69-203 (286)
153 PRK11865 pyruvate ferredoxin o 98.9 2.1E-08 4.6E-13 106.4 14.8 152 183-370 65-220 (299)
154 TIGR02177 PorB_KorB 2-oxoacid: 98.9 6.3E-09 1.4E-13 110.0 9.2 134 187-363 53-186 (287)
155 PRK13030 2-oxoacid ferredoxin 98.8 3.2E-07 7E-12 112.4 23.6 252 442-711 75-396 (1159)
156 TIGR03336 IOR_alpha indolepyru 98.8 1.4E-08 3E-13 119.0 10.2 128 186-362 402-529 (595)
157 COG0567 SucA 2-oxoglutarate de 98.8 5.2E-07 1.1E-11 105.8 22.1 206 442-654 628-858 (906)
158 COG3961 Pyruvate decarboxylase 98.7 1.5E-08 3.2E-13 111.7 7.3 125 186-364 410-536 (557)
159 PRK09193 indolepyruvate ferred 98.7 4.1E-07 8.8E-12 111.2 20.1 249 442-711 83-404 (1165)
160 PLN02980 2-oxoglutarate decarb 98.7 6.8E-08 1.5E-12 124.6 10.8 132 185-366 757-892 (1655)
161 PF03894 XFP: D-xylulose 5-pho 98.6 6E-07 1.3E-11 86.8 13.8 144 403-546 2-178 (179)
162 PRK13029 2-oxoacid ferredoxin 98.6 2.2E-06 4.7E-11 104.8 21.7 254 442-709 86-416 (1186)
163 KOG4166 Thiamine pyrophosphate 98.6 9E-07 2E-11 94.9 15.3 189 115-371 467-655 (675)
164 PF01855 POR_N: Pyruvate flavo 98.5 2.3E-07 5.1E-12 95.5 8.5 114 443-559 38-155 (230)
165 COG3962 Acetolactate synthase 98.5 6.4E-07 1.4E-11 97.2 11.0 137 180-365 437-577 (617)
166 KOG1185 Thiamine pyrophosphate 98.3 1.8E-05 3.9E-10 86.9 17.4 260 34-366 285-563 (571)
167 KOG1184 Thiamine pyrophosphate 98.3 1.7E-06 3.6E-11 95.4 8.8 67 186-258 414-480 (561)
168 COG1013 PorB Pyruvate:ferredox 97.8 0.00012 2.7E-09 78.0 10.7 131 190-363 73-204 (294)
169 COG4231 Indolepyruvate ferredo 97.7 0.00012 2.5E-09 83.5 9.6 124 188-362 429-553 (640)
170 COG3960 Glyoxylate carboligase 97.6 9.3E-05 2E-09 77.6 6.3 137 186-364 418-557 (592)
171 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0022 4.7E-08 62.2 15.6 114 440-557 41-159 (160)
172 KOG0523 Transketolase [Carbohy 97.3 0.00027 5.7E-09 79.8 5.6 60 320-383 200-259 (632)
173 cd07035 TPP_PYR_POX_like Pyrim 97.2 0.0066 1.4E-07 58.4 12.8 114 441-557 35-154 (155)
174 COG1165 MenD 2-succinyl-6-hydr 97.1 0.012 2.6E-07 66.6 15.2 195 92-367 351-550 (566)
175 TIGR03297 Ppyr-DeCO2ase phosph 96.9 0.0065 1.4E-07 67.0 11.0 122 438-561 23-155 (361)
176 cd03377 TPP_PFOR_PNO Thiamine 96.8 0.0045 9.8E-08 67.4 9.1 115 209-363 151-267 (365)
177 PRK13030 2-oxoacid ferredoxin 96.8 0.0046 1E-07 76.8 9.7 71 186-267 467-538 (1159)
178 PRK09193 indolepyruvate ferred 96.6 0.008 1.7E-07 74.5 9.8 61 186-252 480-541 (1165)
179 PRK13029 2-oxoacid ferredoxin 96.2 0.018 3.9E-07 71.5 10.1 70 187-267 495-565 (1186)
180 PF02776 TPP_enzyme_N: Thiamin 96.2 0.053 1.1E-06 53.3 11.7 124 433-559 32-162 (172)
181 TIGR03845 sulfopyru_alph sulfo 95.5 0.19 4.2E-06 48.8 12.0 110 447-559 40-155 (157)
182 TIGR02176 pyruv_ox_red pyruvat 94.8 0.084 1.8E-06 66.7 9.0 114 210-363 952-1067(1165)
183 COG4032 Predicted thiamine-pyr 94.6 0.061 1.3E-06 50.3 5.4 109 449-558 50-163 (172)
184 cd07039 TPP_PYR_POX Pyrimidine 94.5 0.4 8.7E-06 46.9 11.1 115 442-559 40-159 (164)
185 cd07037 TPP_PYR_MenD Pyrimidin 94.1 0.32 6.9E-06 47.6 9.6 113 442-557 37-161 (162)
186 PRK07586 hypothetical protein; 94.0 6.7 0.00015 45.4 21.8 200 442-646 41-271 (514)
187 cd02001 TPP_ComE_PpyrDC Thiami 94.0 0.65 1.4E-05 45.0 11.4 111 437-556 32-152 (157)
188 cd02004 TPP_BZL_OCoD_HPCL Thia 93.6 0.47 1E-05 46.5 9.9 116 436-556 34-169 (172)
189 PRK07524 hypothetical protein; 93.5 2.4 5.2E-05 49.4 17.2 115 442-559 41-164 (535)
190 cd07038 TPP_PYR_PDC_IPDC_like 92.2 1.5 3.3E-05 42.7 10.9 116 440-558 34-162 (162)
191 PRK12474 hypothetical protein; 91.8 6.7 0.00014 45.6 17.7 114 442-560 45-166 (518)
192 PRK05858 hypothetical protein; 91.4 4 8.6E-05 47.7 15.4 117 440-559 42-164 (542)
193 PRK06965 acetolactate synthase 91.3 4.6 9.9E-05 47.7 15.8 114 441-559 60-181 (587)
194 PRK07064 hypothetical protein; 91.1 4.6 9.9E-05 47.1 15.5 115 442-559 43-166 (544)
195 PRK06466 acetolactate synthase 91.0 3.2 7E-05 48.8 14.1 114 441-559 43-164 (574)
196 TIGR00118 acolac_lg acetolacta 90.9 4.5 9.8E-05 47.4 15.2 115 442-559 41-161 (558)
197 PRK08155 acetolactate synthase 90.9 3.3 7.1E-05 48.7 14.0 114 441-559 52-173 (564)
198 cd02015 TPP_AHAS Thiamine pyro 90.8 2 4.4E-05 42.6 10.6 116 437-556 37-171 (186)
199 PRK07979 acetolactate synthase 90.8 1.6 3.5E-05 51.3 11.4 114 442-560 44-165 (574)
200 PRK07282 acetolactate synthase 90.7 4.2 9.1E-05 47.8 14.6 115 441-560 49-171 (566)
201 cd03376 TPP_PFOR_porB_like Thi 90.6 6.4 0.00014 40.9 14.3 90 465-556 80-197 (235)
202 PRK07710 acetolactate synthase 90.6 4.1 8.9E-05 47.9 14.4 116 439-559 52-175 (571)
203 cd02014 TPP_POX Thiamine pyrop 90.4 5.4 0.00012 39.3 13.0 119 434-556 35-170 (178)
204 PRK11866 2-oxoacid ferredoxin 90.4 4.8 0.0001 43.0 13.3 148 401-556 18-189 (279)
205 cd02010 TPP_ALS Thiamine pyrop 90.1 5.8 0.00012 39.2 13.0 118 437-557 35-168 (177)
206 PRK06163 hypothetical protein; 90.1 11 0.00025 38.1 15.3 116 438-557 48-171 (202)
207 PRK07525 sulfoacetaldehyde ace 90.1 1.8 3.9E-05 51.1 10.9 114 442-560 45-165 (588)
208 PRK08199 thiamine pyrophosphat 90.1 5.7 0.00012 46.6 15.0 114 441-559 47-168 (557)
209 cd02009 TPP_SHCHC_synthase Thi 90.0 3.6 7.9E-05 40.5 11.4 113 438-555 39-171 (175)
210 TIGR02177 PorB_KorB 2-oxoacid: 89.8 5.4 0.00012 42.7 13.2 142 403-556 14-183 (287)
211 PRK08322 acetolactate synthase 89.8 5.1 0.00011 46.8 14.3 113 442-559 40-160 (547)
212 PRK11864 2-ketoisovalerate fer 89.8 4.4 9.5E-05 43.6 12.4 103 452-556 73-204 (300)
213 PRK08527 acetolactate synthase 89.6 6.5 0.00014 46.2 15.0 113 442-559 43-163 (563)
214 TIGR02418 acolac_catab acetola 89.5 1.9 4.2E-05 50.2 10.5 115 442-559 38-158 (539)
215 PRK06457 pyruvate dehydrogenas 89.4 2 4.3E-05 50.3 10.5 114 441-559 40-160 (549)
216 PRK08611 pyruvate oxidase; Pro 89.3 6.3 0.00014 46.4 14.7 114 441-559 44-164 (576)
217 TIGR03846 sulfopy_beta sulfopy 89.2 4.7 0.0001 40.1 11.6 141 404-556 3-153 (181)
218 PRK07789 acetolactate synthase 89.0 7.7 0.00017 46.1 15.2 114 441-559 70-191 (612)
219 PRK09107 acetolactate synthase 88.9 7.3 0.00016 46.1 14.9 115 441-560 50-172 (595)
220 cd02018 TPP_PFOR Thiamine pyro 88.7 15 0.00033 38.1 15.4 117 439-556 51-200 (237)
221 PRK11269 glyoxylate carboligas 88.6 6.9 0.00015 46.3 14.3 114 441-559 43-165 (591)
222 TIGR03457 sulphoacet_xsc sulfo 88.2 3.4 7.3E-05 48.7 11.4 116 442-560 41-161 (579)
223 PRK07092 benzoylformate decarb 88.2 3.2 7E-05 48.3 11.1 115 441-559 49-171 (530)
224 TIGR01504 glyox_carbo_lig glyo 88.2 3.8 8.3E-05 48.4 11.8 114 442-560 43-165 (588)
225 cd06586 TPP_enzyme_PYR Pyrimid 88.0 2.1 4.6E-05 40.6 8.0 48 193-248 48-96 (154)
226 PRK08617 acetolactate synthase 87.7 3 6.5E-05 48.8 10.5 114 441-559 43-164 (552)
227 PRK06725 acetolactate synthase 87.6 3.6 7.9E-05 48.4 11.1 115 441-560 53-175 (570)
228 TIGR02720 pyruv_oxi_spxB pyruv 87.5 3.8 8.3E-05 48.3 11.3 116 441-560 39-160 (575)
229 PRK06546 pyruvate dehydrogenas 87.4 8.5 0.00018 45.4 14.1 114 441-559 42-162 (578)
230 PRK06882 acetolactate synthase 87.4 3.9 8.4E-05 48.1 11.2 115 442-559 44-164 (574)
231 PRK06112 acetolactate synthase 87.3 3.8 8.3E-05 48.3 11.1 116 441-559 50-171 (578)
232 PRK08978 acetolactate synthase 87.1 3.8 8.2E-05 47.9 10.9 113 442-559 40-160 (548)
233 PF09363 XFP_C: XFP C-terminal 87.0 11 0.00023 38.1 12.2 117 587-711 35-164 (203)
234 PRK09628 oorB 2-oxoglutarate-a 87.0 11 0.00023 40.2 13.2 103 452-556 72-198 (277)
235 PRK06456 acetolactate synthase 86.9 4.2 9E-05 47.9 11.1 113 442-559 45-165 (572)
236 PRK06276 acetolactate synthase 86.7 4.4 9.5E-05 47.9 11.2 115 442-559 40-160 (586)
237 PRK09124 pyruvate dehydrogenas 86.7 4.6 9.9E-05 47.6 11.3 113 442-559 43-162 (574)
238 PRK11865 pyruvate ferredoxin o 86.3 19 0.00041 38.8 14.6 103 452-556 73-208 (299)
239 PRK08266 hypothetical protein; 86.3 4.6 0.0001 47.1 11.0 116 441-559 44-168 (542)
240 PRK07418 acetolactate synthase 86.2 4.9 0.00011 47.8 11.3 114 441-559 61-182 (616)
241 cd01460 vWA_midasin VWA_Midasi 86.2 9.1 0.0002 40.5 12.0 63 186-248 134-205 (266)
242 PLN02470 acetolactate synthase 85.9 4.6 0.0001 47.7 10.8 114 441-559 52-173 (585)
243 PRK07449 2-succinyl-5-enolpyru 85.8 6.5 0.00014 46.2 12.0 114 442-559 49-174 (568)
244 cd03372 TPP_ComE Thiamine pyro 85.8 9.1 0.0002 37.9 11.3 110 439-556 34-152 (179)
245 cd02006 TPP_Gcl Thiamine pyrop 85.8 2.4 5.3E-05 42.7 7.3 120 435-556 42-191 (202)
246 PLN02573 pyruvate decarboxylas 85.5 4.3 9.4E-05 47.9 10.3 115 442-560 56-183 (578)
247 cd02013 TPP_Xsc_like Thiamine 85.5 4.4 9.5E-05 40.7 9.0 118 436-556 39-176 (196)
248 PRK08979 acetolactate synthase 85.4 5.4 0.00012 47.0 11.0 114 441-559 43-164 (572)
249 COG0028 IlvB Thiamine pyrophos 85.3 17 0.00038 42.6 15.0 122 433-560 33-162 (550)
250 cd02003 TPP_IolD Thiamine pyro 85.1 3.6 7.7E-05 41.7 8.2 116 436-556 34-181 (205)
251 TIGR03254 oxalate_oxc oxalyl-C 84.5 6.3 0.00014 46.2 11.0 115 442-559 42-164 (554)
252 PRK11867 2-oxoglutarate ferred 84.3 14 0.00031 39.5 12.7 145 401-556 28-199 (286)
253 PRK06048 acetolactate synthase 84.1 6.9 0.00015 46.0 11.1 114 441-559 46-167 (561)
254 cd02012 TPP_TK Thiamine pyroph 84.0 8 0.00017 40.5 10.5 102 453-557 110-225 (255)
255 PRK09259 putative oxalyl-CoA d 83.2 7.4 0.00016 45.8 10.9 116 441-559 48-171 (569)
256 CHL00099 ilvB acetohydroxyacid 83.2 7.8 0.00017 45.8 11.1 113 442-559 53-173 (585)
257 cd00568 TPP_enzymes Thiamine p 82.7 5.3 0.00011 38.4 8.0 100 453-556 51-166 (168)
258 cd02007 TPP_DXS Thiamine pyrop 82.7 14 0.0003 37.1 11.2 97 453-556 80-187 (195)
259 COG1071 AcoA Pyruvate/2-oxoglu 81.5 8.2 0.00018 42.5 9.5 102 452-556 144-258 (358)
260 cd07033 TPP_PYR_DXS_TK_like Py 81.4 15 0.00032 35.5 10.5 48 193-248 52-100 (156)
261 TIGR03394 indol_phenyl_DC indo 81.2 26 0.00056 41.0 14.3 116 442-560 40-166 (535)
262 PRK08273 thiamine pyrophosphat 81.1 7.5 0.00016 46.0 10.0 115 441-560 43-165 (597)
263 cd03371 TPP_PpyrDC Thiamine py 80.9 39 0.00085 33.7 13.6 112 439-556 40-160 (188)
264 PRK08327 acetolactate synthase 80.7 11 0.00023 44.5 11.0 115 442-559 52-181 (569)
265 TIGR00173 menD 2-succinyl-5-en 80.4 6.1 0.00013 44.8 8.6 115 442-560 40-167 (432)
266 cd02002 TPP_BFDC Thiamine pyro 79.5 10 0.00022 37.1 8.9 114 438-555 38-175 (178)
267 cd02008 TPP_IOR_alpha Thiamine 78.0 13 0.00028 36.6 9.1 99 455-556 58-174 (178)
268 PF02775 TPP_enzyme_C: Thiamin 76.9 17 0.00036 34.7 9.3 114 438-555 16-152 (153)
269 cd07036 TPP_PYR_E1-PDHc-beta_l 76.7 18 0.00038 35.6 9.4 34 321-359 130-164 (167)
270 cd03375 TPP_OGFOR Thiamine pyr 76.6 25 0.00055 35.2 10.8 99 454-556 57-181 (193)
271 PRK05778 2-oxoglutarate ferred 76.4 14 0.0003 39.9 9.3 102 453-556 75-200 (301)
272 cd03027 GRX_DEP Glutaredoxin ( 75.4 9.3 0.0002 31.5 6.2 65 588-654 2-67 (73)
273 cd03028 GRX_PICOT_like Glutare 75.0 9.9 0.00021 33.0 6.5 66 586-655 7-80 (90)
274 PRK11869 2-oxoacid ferredoxin 74.2 13 0.00029 39.6 8.4 149 400-556 18-190 (280)
275 PRK12571 1-deoxy-D-xylulose-5- 72.5 23 0.0005 42.3 10.8 49 193-249 374-423 (641)
276 TIGR00204 dxs 1-deoxy-D-xylulo 72.3 28 0.00061 41.5 11.4 50 192-249 364-414 (617)
277 PLN02980 2-oxoglutarate decarb 72.1 36 0.00078 45.4 13.3 113 442-558 341-466 (1655)
278 cd02005 TPP_PDC_IPDC Thiamine 72.0 14 0.0003 36.7 7.5 117 438-556 38-171 (183)
279 PRK12315 1-deoxy-D-xylulose-5- 71.4 36 0.00078 40.3 12.0 108 444-556 110-240 (581)
280 PRK06154 hypothetical protein; 71.0 32 0.00068 40.5 11.4 119 435-556 416-552 (565)
281 TIGR00365 monothiol glutaredox 69.2 17 0.00038 32.1 6.7 70 586-656 11-85 (97)
282 PRK05444 1-deoxy-D-xylulose-5- 69.1 27 0.00058 41.3 10.3 101 453-557 122-240 (580)
283 KOG1185 Thiamine pyrophosphate 68.7 26 0.00057 39.8 9.3 117 434-554 414-555 (571)
284 TIGR03181 PDH_E1_alph_x pyruva 68.5 17 0.00037 40.0 7.9 102 453-556 131-243 (341)
285 cd07034 TPP_PYR_PFOR_IOR-alpha 67.1 44 0.00095 32.0 9.7 48 193-248 54-101 (160)
286 PTZ00089 transketolase; Provis 66.6 39 0.00083 40.7 11.0 105 192-361 415-520 (661)
287 cd07035 TPP_PYR_POX_like Pyrim 66.1 30 0.00064 32.9 8.3 50 192-248 46-96 (155)
288 cd02000 TPP_E1_PDC_ADC_BCADC T 65.7 21 0.00046 38.2 7.9 89 466-556 127-225 (293)
289 PF00676 E1_dh: Dehydrogenase 65.2 16 0.00035 39.3 6.9 102 454-556 107-222 (300)
290 PLN02582 1-deoxy-D-xylulose-5- 64.1 54 0.0012 39.5 11.5 50 192-249 410-460 (677)
291 PF02779 Transket_pyr: Transke 63.8 58 0.0013 32.0 10.0 38 321-361 133-171 (178)
292 PLN02234 1-deoxy-D-xylulose-5- 63.7 49 0.0011 39.6 10.9 49 193-249 412-461 (641)
293 TIGR03393 indolpyr_decarb indo 63.6 85 0.0018 36.6 13.0 112 440-557 394-525 (539)
294 TIGR03845 sulfopyru_alph sulfo 62.6 74 0.0016 30.8 10.3 51 190-248 44-95 (157)
295 cd03418 GRX_GRXb_1_3_like Glut 61.7 26 0.00056 28.6 6.1 65 589-655 2-68 (75)
296 PLN02790 transketolase 61.7 52 0.0011 39.5 10.9 77 478-557 153-236 (654)
297 cd07037 TPP_PYR_MenD Pyrimidin 60.7 43 0.00093 32.7 8.3 48 193-246 48-95 (162)
298 COG3961 Pyruvate decarboxylase 60.6 39 0.00085 38.8 8.8 147 405-559 6-170 (557)
299 TIGR02190 GlrX-dom Glutaredoxi 59.9 35 0.00077 28.6 6.7 71 586-660 7-78 (79)
300 PRK12754 transketolase; Review 58.0 67 0.0015 38.6 10.9 76 479-557 163-244 (663)
301 cd00860 ThrRS_anticodon ThrRS 57.5 54 0.0012 27.7 7.6 58 588-647 3-61 (91)
302 PLN02225 1-deoxy-D-xylulose-5- 56.2 78 0.0017 38.2 10.9 49 192-248 435-484 (701)
303 PF03129 HGTP_anticodon: Antic 55.5 44 0.00096 28.7 6.8 57 588-646 1-61 (94)
304 cd03029 GRX_hybridPRX5 Glutare 54.4 59 0.0013 26.5 7.0 68 588-659 2-70 (72)
305 CHL00149 odpA pyruvate dehydro 53.2 49 0.0011 36.4 8.1 88 465-556 157-256 (341)
306 PRK05899 transketolase; Review 52.8 1.2E+02 0.0025 36.3 11.8 88 466-557 151-246 (624)
307 PF04273 DUF442: Putative phos 52.4 18 0.0004 32.9 3.9 41 321-362 53-95 (110)
308 cd01481 vWA_collagen_alpha3-VI 52.0 40 0.00086 32.8 6.5 55 589-646 110-164 (165)
309 COG1165 MenD 2-succinyl-6-hydr 51.0 1E+02 0.0022 35.9 10.2 138 399-545 8-153 (566)
310 PRK12753 transketolase; Review 50.9 84 0.0018 37.9 10.2 105 192-361 414-519 (663)
311 PRK10638 glutaredoxin 3; Provi 50.1 57 0.0012 27.5 6.5 65 588-654 3-68 (83)
312 COG2241 CobL Precorrin-6B meth 49.6 1.4E+02 0.003 30.6 10.0 94 587-691 95-192 (210)
313 TIGR02189 GlrX-like_plant Glut 49.1 84 0.0018 27.8 7.6 67 587-655 8-78 (99)
314 cd07039 TPP_PYR_POX Pyrimidine 49.0 99 0.0021 30.0 8.7 48 194-247 52-99 (164)
315 PLN02683 pyruvate dehydrogenas 48.9 1.3E+02 0.0027 33.4 10.5 35 321-360 160-195 (356)
316 PRK15473 cbiF cobalt-precorrin 47.9 1.2E+02 0.0025 31.9 9.6 61 629-692 155-217 (257)
317 TIGR00232 tktlase_bact transke 47.9 1.2E+02 0.0027 36.3 11.0 49 193-248 409-457 (653)
318 cd00858 GlyRS_anticodon GlyRS 47.7 72 0.0016 29.2 7.2 57 588-647 28-87 (121)
319 cd03033 ArsC_15kD Arsenate Red 46.8 42 0.00091 30.7 5.4 48 589-638 2-49 (113)
320 PLN02269 Pyruvate dehydrogenas 46.7 84 0.0018 34.9 8.7 72 484-557 181-257 (362)
321 TIGR02181 GRX_bact Glutaredoxi 45.2 54 0.0012 27.2 5.5 60 596-656 7-67 (79)
322 COG3962 Acetolactate synthase 44.9 2.5E+02 0.0055 32.1 11.7 154 399-558 7-188 (617)
323 cd01080 NAD_bind_m-THF_DH_Cycl 44.8 53 0.0011 32.3 6.1 53 585-645 43-95 (168)
324 PF03358 FMN_red: NADPH-depend 44.6 50 0.0011 31.1 5.8 64 597-660 16-93 (152)
325 PF00590 TP_methylase: Tetrapy 42.7 55 0.0012 32.6 6.1 61 627-690 147-209 (210)
326 cd00859 HisRS_anticodon HisRS 41.6 1.1E+02 0.0024 25.3 7.0 56 588-646 3-60 (91)
327 KOG1184 Thiamine pyrophosphate 41.6 89 0.0019 36.0 7.8 148 405-560 6-171 (561)
328 TIGR01465 cobM_cbiF precorrin- 40.9 1.3E+02 0.0029 30.5 8.7 62 628-692 145-208 (229)
329 cd00738 HGTP_anticodon HGTP an 40.7 1.2E+02 0.0026 25.6 7.2 58 588-647 3-64 (94)
330 cd00861 ProRS_anticodon_short 40.7 1.2E+02 0.0025 25.9 7.0 58 588-647 3-64 (94)
331 PF00456 Transketolase_N: Tran 40.6 1.4E+02 0.0029 32.9 9.0 78 478-558 159-242 (332)
332 KOG1145 Mitochondrial translat 39.7 3.6E+02 0.0078 31.7 12.1 41 207-248 224-264 (683)
333 cd02017 TPP_E1_EcPDC_like Thia 39.5 2.9E+02 0.0063 31.0 11.3 51 478-531 163-218 (386)
334 TIGR02194 GlrX_NrdH Glutaredox 38.5 80 0.0017 25.8 5.4 56 597-653 8-64 (72)
335 PRK08366 vorA 2-ketoisovalerat 38.5 2.3E+02 0.0049 31.9 10.5 48 192-248 61-108 (390)
336 PF02776 TPP_enzyme_N: Thiamin 38.3 1.5E+02 0.0032 28.8 8.1 48 193-248 52-101 (172)
337 KOG2862 Alanine-glyoxylate ami 38.0 2.1E+02 0.0046 31.1 9.5 127 581-711 87-228 (385)
338 PF03960 ArsC: ArsC family; I 37.7 56 0.0012 29.4 4.7 39 598-637 6-44 (110)
339 TIGR03182 PDH_E1_alph_y pyruva 37.0 2.3E+02 0.0051 30.7 10.2 89 466-556 133-231 (315)
340 PRK10853 putative reductase; P 36.3 52 0.0011 30.3 4.2 44 594-638 5-49 (118)
341 KOG0225 Pyruvate dehydrogenase 35.7 1.9E+02 0.0042 31.5 8.8 87 467-557 189-285 (394)
342 COG0075 Serine-pyruvate aminot 35.6 1.5E+02 0.0032 33.2 8.4 82 581-665 75-162 (383)
343 cd06063 H2MP_Cyano-H2up This g 35.3 1.3E+02 0.0029 28.5 7.1 55 589-647 1-61 (146)
344 TIGR01616 nitro_assoc nitrogen 34.8 74 0.0016 29.7 5.0 44 593-637 5-49 (126)
345 cd03035 ArsC_Yffb Arsenate Red 34.7 63 0.0014 29.0 4.5 42 597-639 8-49 (105)
346 COG3958 Transketolase, C-termi 34.6 2.5E+02 0.0053 30.3 9.3 58 184-248 52-111 (312)
347 cd06062 H2MP_MemB-H2up Endopep 33.7 1.5E+02 0.0032 28.2 7.1 55 589-647 1-62 (146)
348 PRK08659 2-oxoglutarate ferred 33.6 2.4E+02 0.0052 31.5 9.7 49 192-248 60-108 (376)
349 PF11823 DUF3343: Protein of u 33.0 72 0.0016 26.5 4.3 25 597-621 10-34 (73)
350 PRK09212 pyruvate dehydrogenas 32.5 2.5E+02 0.0054 30.6 9.5 35 321-360 137-172 (327)
351 PRK10329 glutaredoxin-like pro 32.4 1.2E+02 0.0027 25.7 5.7 61 589-654 3-66 (81)
352 COG1393 ArsC Arsenate reductas 32.0 1E+02 0.0022 28.4 5.4 48 589-638 3-50 (117)
353 cd02066 GRX_family Glutaredoxi 31.6 1.9E+02 0.0042 22.4 6.6 63 589-653 2-65 (72)
354 cd06198 FNR_like_3 NAD(P) bind 31.1 2.7E+02 0.0059 27.7 9.1 52 586-637 95-150 (216)
355 PLN02374 pyruvate dehydrogenas 30.9 2.3E+02 0.0051 32.2 9.2 89 466-556 224-322 (433)
356 PRK07119 2-ketoisovalerate fer 30.5 69 0.0015 35.4 4.8 47 192-246 60-106 (352)
357 PRK11200 grxA glutaredoxin 1; 30.2 2.2E+02 0.0049 23.9 7.0 71 589-662 3-81 (85)
358 PRK10026 arsenate reductase; P 29.7 85 0.0018 30.0 4.6 42 596-638 10-51 (141)
359 PRK10824 glutaredoxin-4; Provi 29.4 1.6E+02 0.0035 27.0 6.3 69 586-655 14-87 (115)
360 cd00115 LMWPc Substituted upda 29.3 1.6E+02 0.0034 27.6 6.5 85 603-709 49-140 (141)
361 cd06068 H2MP_like-1 Putative [ 29.0 1.8E+02 0.0039 27.5 6.8 54 591-647 2-61 (144)
362 TIGR03710 OAFO_sf 2-oxoacid:ac 28.8 2.1E+02 0.0046 33.7 8.7 49 192-248 249-297 (562)
363 PRK08367 porA pyruvate ferredo 28.4 3.5E+02 0.0076 30.4 10.0 48 192-248 62-109 (394)
364 TIGR00014 arsC arsenate reduct 28.2 96 0.0021 28.2 4.6 41 597-638 8-48 (114)
365 COG0543 UbiB 2-polyprenylpheno 27.5 2.4E+02 0.0053 29.4 8.1 73 577-650 97-174 (252)
366 cd07038 TPP_PYR_PDC_IPDC_like 27.4 4E+02 0.0087 25.7 9.1 50 192-248 47-96 (162)
367 PF04430 DUF498: Protein of un 27.1 51 0.0011 29.8 2.5 37 585-621 52-89 (110)
368 TIGR02691 arsC_pI258_fam arsen 27.0 1.5E+02 0.0032 27.7 5.7 87 602-706 41-127 (129)
369 PRK05787 cobalt-precorrin-6Y C 27.0 4E+02 0.0086 26.5 9.4 73 615-690 120-193 (210)
370 cd05125 Mth938_2P1-like Mth938 26.7 89 0.0019 28.7 4.0 38 584-621 52-90 (114)
371 cd03034 ArsC_ArsC Arsenate Red 26.7 1.1E+02 0.0023 27.8 4.6 41 597-638 8-48 (112)
372 PTZ00062 glutaredoxin; Provisi 26.5 2.2E+02 0.0048 28.9 7.2 74 586-666 112-194 (204)
373 PF00258 Flavodoxin_1: Flavodo 25.9 1.4E+02 0.0031 27.6 5.5 30 595-624 8-37 (143)
374 cd05212 NAD_bind_m-THF_DH_Cycl 25.9 1.6E+02 0.0034 28.1 5.7 54 585-646 27-80 (140)
375 COG1104 NifS Cysteine sulfinat 25.9 1.6E+02 0.0034 33.0 6.4 75 591-665 94-172 (386)
376 COG0695 GrxC Glutaredoxin and 25.9 1.8E+02 0.0039 24.6 5.6 62 589-651 3-66 (80)
377 PF10740 DUF2529: Protein of u 25.9 1.7E+02 0.0036 29.0 5.9 120 534-658 24-157 (172)
378 COG0680 HyaD Ni,Fe-hydrogenase 25.9 1.3E+02 0.0027 29.4 5.2 56 587-646 2-64 (160)
379 PRK10466 hybD hydrogenase 2 ma 25.7 2.9E+02 0.0064 26.7 7.8 56 588-647 2-64 (164)
380 PF01855 POR_N: Pyruvate flavo 25.7 3E+02 0.0065 28.4 8.2 47 193-247 49-95 (230)
381 PRK10264 hydrogenase 1 maturat 25.6 3E+02 0.0064 27.8 7.9 56 587-646 4-66 (195)
382 CHL00144 odpB pyruvate dehydro 25.2 3.8E+02 0.0083 29.2 9.4 30 325-359 142-171 (327)
383 PRK03767 NAD(P)H:quinone oxido 25.1 2.6E+02 0.0057 27.9 7.6 68 595-663 13-95 (200)
384 PRK11892 pyruvate dehydrogenas 24.9 3.9E+02 0.0084 30.8 9.7 34 321-359 275-309 (464)
385 PF01565 FAD_binding_4: FAD bi 24.7 3E+02 0.0066 25.2 7.5 76 527-605 3-81 (139)
386 smart00861 Transket_pyr Transk 24.7 6.2E+02 0.013 24.2 10.6 32 325-360 133-164 (168)
387 PRK11544 hycI hydrogenase 3 ma 24.6 2.9E+02 0.0064 26.6 7.5 56 588-646 2-63 (156)
388 cd00518 H2MP Hydrogenase speci 24.3 2.6E+02 0.0056 26.1 6.9 54 591-648 2-61 (139)
389 PF03033 Glyco_transf_28: Glyc 24.0 1.2E+02 0.0025 27.8 4.5 33 589-621 1-35 (139)
390 COG0426 FpaA Uncharacterized f 23.9 3.3E+02 0.0072 30.5 8.5 47 593-642 256-302 (388)
391 TIGR00130 frhD coenzyme F420-r 23.7 2.4E+02 0.0052 27.0 6.7 58 587-647 3-70 (153)
392 cd04795 SIS SIS domain. SIS (S 23.7 3.2E+02 0.007 22.5 6.9 71 589-664 1-74 (87)
393 cd02977 ArsC_family Arsenate R 23.4 1.4E+02 0.003 26.5 4.6 41 597-638 8-48 (105)
394 PRK09622 porA pyruvate flavodo 23.0 6.6E+02 0.014 28.3 11.0 48 192-248 68-115 (407)
395 cd03032 ArsC_Spx Arsenate Redu 22.6 1.4E+02 0.003 27.1 4.6 41 596-637 8-48 (115)
396 COG0021 TktA Transketolase [Ca 22.6 3.9E+02 0.0085 31.9 9.0 79 226-362 441-520 (663)
397 PF00289 CPSase_L_chain: Carba 22.4 2.6E+02 0.0056 25.4 6.2 31 588-621 4-34 (110)
398 COG3453 Uncharacterized protei 22.2 2E+02 0.0044 26.8 5.3 41 321-362 54-96 (130)
399 cd02016 TPP_E1_OGDC_like Thiam 22.2 2.9E+02 0.0062 29.3 7.4 73 483-556 161-243 (265)
400 TIGR02690 resist_ArsH arsenica 22.1 3.9E+02 0.0084 27.5 8.1 62 599-660 44-113 (219)
401 PLN02625 uroporphyrin-III C-me 21.6 4.7E+02 0.01 27.4 9.0 58 632-692 171-230 (263)
402 PF00462 Glutaredoxin: Glutare 21.6 2.8E+02 0.0061 21.4 5.6 28 596-623 7-34 (60)
403 cd03798 GT1_wlbH_like This fam 21.4 6.4E+02 0.014 26.0 10.2 74 625-713 266-346 (377)
404 PF00670 AdoHcyase_NAD: S-aden 21.4 1.4E+02 0.003 29.3 4.4 58 585-645 22-86 (162)
405 PRK13344 spxA transcriptional 21.3 1.5E+02 0.0033 27.8 4.7 42 596-638 8-49 (132)
406 smart00226 LMWPc Low molecular 21.1 2.2E+02 0.0048 26.4 5.8 38 602-647 44-81 (140)
407 cd01452 VWA_26S_proteasome_sub 21.0 1.7E+02 0.0037 29.3 5.2 35 210-244 108-143 (187)
408 TIGR00509 bisC_fam molybdopter 20.7 1.1E+02 0.0024 37.5 4.4 94 607-710 199-303 (770)
409 TIGR00072 hydrog_prot hydrogen 20.6 3.6E+02 0.0078 25.4 7.1 53 591-647 2-61 (145)
410 COG0655 WrbA Multimeric flavod 20.5 3.8E+02 0.0082 26.9 7.7 69 594-662 13-100 (207)
411 cd03036 ArsC_like Arsenate Red 20.3 1.6E+02 0.0035 26.5 4.5 41 597-638 8-48 (111)
412 cd02769 MopB_DMSOR-BSOR-TMAOR 20.3 1.2E+02 0.0026 36.1 4.5 94 607-710 203-307 (609)
413 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.3 3.9E+02 0.0084 24.0 7.1 53 589-646 2-55 (126)
414 TIGR00142 hycI hydrogenase mat 20.1 3E+02 0.0066 26.0 6.5 55 589-646 1-62 (146)
415 PTZ00182 3-methyl-2-oxobutanat 20.1 6.2E+02 0.013 28.0 9.8 30 325-359 173-202 (355)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=5.2e-149 Score=1220.30 Aligned_cols=621 Identities=58% Similarity=0.943 Sum_probs=594.4
Q ss_pred CCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHH
Q 004923 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI 153 (723)
Q Consensus 74 ~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~ 153 (723)
+|+|+.|++|.|||+|+.+||++||+|||..+++.|+++|||+|++||+||||+|||||||.|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHh
Q 004923 154 LTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNA 233 (723)
Q Consensus 154 l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A 233 (723)
||||+++|.|+||.+|++|||+|.||+||.|++||+|+|||+|+|||.|++++|++++||||||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc
Q 004923 234 G-YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM 312 (723)
Q Consensus 234 ~-~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~ 312 (723)
+ ..+.|+|||+|||++ |+ ++++|+++++|+++++++.|+.+|+..|.+.+..|..+.+...+.++.+|++
T Consensus 162 g~~~~~~~iVILNDNeM-SI--------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 162 GADLKSNLIVILNDNEM-SI--------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred hhccCCCEEEEEeCCCc-cc--------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9 556999999999994 54 6789999999999999999999999999999888888899999999999998
Q ss_pred cCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccC-ccccc
Q 004923 313 ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-ATGKQ 391 (723)
Q Consensus 313 ~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~-~~g~~ 391 (723)
+.+. ++||++||+|++|+||||+++|..+|+.+|+ .++|++|||.|.|||||++||+++.+|||+.+||+ ++|..
T Consensus 233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~ 308 (627)
T COG1154 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS 308 (627)
T ss_pred cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence 8764 8999999999999999999999999999998 58999999999999999999999999999999996 88887
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 004923 392 FKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (723)
Q Consensus 392 ~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t 471 (723)
.+++...++|+++|+++|.+++++|+++++++|+|.+++||..|+++||+||||+||||||+|++|+|||.+|+|||+++
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 66666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCC
Q 004923 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551 (723)
Q Consensus 472 ~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P 551 (723)
||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+|++|||+|++|+|++|+..|+.+|+..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHH
Q 004923 552 SCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI 631 (723)
Q Consensus 552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i 631 (723)
+.||+||++........ +...+++|++.++++|.||+||++|+++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred eEEEecCCCCCCCCccc--ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 99999999765442221 2457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 632 RSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 632 ~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
+++++.++.+||+||+. .||+|+.|++++...++ .++++++|+||.|++||+++++++.+|||++.|+++|++++.
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999998 79999999999999886 378999999999999999999999999999999999999886
Q ss_pred cc
Q 004923 711 QT 712 (723)
Q Consensus 711 ~~ 712 (723)
..
T Consensus 624 ~~ 625 (627)
T COG1154 624 AR 625 (627)
T ss_pred hc
Confidence 54
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.9e-144 Score=1232.20 Aligned_cols=640 Identities=59% Similarity=0.983 Sum_probs=592.6
Q ss_pred ccccccccccccCCCCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHh-hhcCCCCCCcccHHHHHHHHhhccCC
Q 004923 57 VCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNV-SKTGGHLGSSLGVIELTVALHYVFNA 135 (723)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v-~~~~GH~gsslg~~el~~aL~~~~~~ 135 (723)
++...++.++|+++++++|+|++|++|.|||+|+.+||++||+|||.+|++.| +++|||+|++||+|||++|||||||.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~ 138 (701)
T PLN02225 59 VCCSLPNTDEYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRA 138 (701)
T ss_pred cccCCCccccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCC
Confidence 33345566688889988999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEE
Q 004923 136 PKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAV 215 (723)
Q Consensus 136 p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~v 215 (723)
|+|+||||+|||+|+||+||||++.|++ ||+||++|||++.||+||.|++||+|++||+|+|||.|++++|++++||+|
T Consensus 139 p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaV 217 (701)
T PLN02225 139 PVDNILWDAVEQTYAHKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAV 217 (701)
T ss_pred CCCceeeccccccchhhHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccC
Q 004923 216 IGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIG 295 (723)
Q Consensus 216 iGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g 295 (723)
||||+++.||+|||||+|+..+.|+|||+|||+| |+......|...+||+++++|+++++++.|+.+|+..|.+++.++
T Consensus 218 IGDGaltgGma~EaLN~~g~~~~~livILNDN~m-Si~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~ 296 (701)
T PLN02225 218 IDNATITAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIG 296 (701)
T ss_pred EcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCC-CCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999995 654333345556699999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcc
Q 004923 296 GPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAA 375 (723)
Q Consensus 296 ~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~ 375 (723)
..+..+.+|+++++|+++.+...++||++||+|++|+||||+++|+++|+++|+.+.++|++|||+|.||+
T Consensus 297 ~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk--------- 367 (701)
T PLN02225 297 KGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR--------- 367 (701)
T ss_pred HHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC---------
Confidence 77888889999999999876545899999999999999999999999999999854459999999999998
Q ss_pred cccCCcccccCcccccccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHH
Q 004923 376 DKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVT 455 (723)
Q Consensus 376 ~~~H~~~~fd~~~g~~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~ 455 (723)
|++||+ .+......+|+++|+++|.+++++|++|+++++||+.++++..|+++||+||||+|||||||++
T Consensus 368 ---------d~~tg~-~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt 437 (701)
T PLN02225 368 ---------DAETGK-NIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVT 437 (701)
T ss_pred ---------CCCCCC-cCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHH
Confidence 456665 2222235689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHH
Q 004923 456 FAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEA 535 (723)
Q Consensus 456 ~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~ 535 (723)
+|+|||+.|+|||+++|++|++|+||||++++|++++||+++++++|++|+||+|||+.+|+++||++|||+|++|+|++
T Consensus 438 ~AAGLA~~G~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~ 517 (701)
T PLN02225 438 FSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADED 517 (701)
T ss_pred HHHHHHHCCCEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcccc--CCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCC
Q 004923 536 ELFHMVATAAAIDDRPSCFRYPRGNGIGVE--LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGL 613 (723)
Q Consensus 536 E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~--~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi 613 (723)
|+..|+++|+..+++|++||+||+..+... ++ +++.+++||++++++|.|++||++|++++.|++|+++|+++||
T Consensus 518 El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~---~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI 594 (701)
T PLN02225 518 ELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVP---TGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGL 594 (701)
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccCCCCcCCC---CCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCC
Confidence 999999999866779999999998644321 12 2367889999999999999999999999999999999999999
Q ss_pred ceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHH
Q 004923 614 RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQ 693 (723)
Q Consensus 614 ~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~ 693 (723)
+++|||+||+||||+++|.+++++++.|||+||+..||||++|+++++++++.+.+.+++++|+||+|+++|++++++++
T Consensus 595 ~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~ 674 (701)
T PLN02225 595 NVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLAL 674 (701)
T ss_pred CEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHH
Confidence 99999999999999999999999999999999998899999999999998754334689999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcchhHHhhhc
Q 004923 694 AGLTPSHIAATVFNILGQTREALEIMS 720 (723)
Q Consensus 694 ~gl~~e~I~~~i~~ll~~~~~~~~~~~ 720 (723)
+|||+++|+++|+++++..+++|.+|+
T Consensus 675 ~GLdae~I~~~i~~~l~~~~~~~~~~~ 701 (701)
T PLN02225 675 AGLTGHHIAATALSLLGRTREALLLMS 701 (701)
T ss_pred hCcCHHHHHHHHHHHHhhcccceEecC
Confidence 999999999999999987777777763
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.4e-138 Score=1194.38 Aligned_cols=665 Identities=92% Similarity=1.411 Sum_probs=614.6
Q ss_pred Cccccc--ccccccccCCCCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhc
Q 004923 55 NGVCAS--LSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYV 132 (723)
Q Consensus 55 ~~~~~~--~~~~~~~~~~~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~ 132 (723)
+.+|++ ..+-.+|.+.++++|||++|++|.|||++++++|+++|.+||+.+++|+++++||+|++||++||+++||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~ 89 (677)
T PLN02582 10 SGVCASLSPEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYV 89 (677)
T ss_pred CcceeeccccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHh
Confidence 334444 344456755556789999999999999999999999999999999999998899999999999999999999
Q ss_pred cCCCCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeE
Q 004923 133 FNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNV 212 (723)
Q Consensus 133 ~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~v 212 (723)
|++|+||||||+|||+|+||+++||+++|.+|||.||++|||++.|++++.|++||+|+++|.|+|+|+|+++++++++|
T Consensus 90 ~~~p~Dr~i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v 169 (677)
T PLN02582 90 FNAPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNV 169 (677)
T ss_pred hCCCCCeEEEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhcc
Q 004923 213 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK 292 (723)
Q Consensus 213 v~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~ 292 (723)
||++|||++++|++|||+|+|+.+++|+++|||||+++|+|+...||.++++|+++++|.+++.++.|+.+|+..+.+.+
T Consensus 170 ~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~ 249 (677)
T PLN02582 170 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTK 249 (677)
T ss_pred EEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999988899999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhh
Q 004923 293 QIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 293 ~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e 372 (723)
.++.....+..++++..++++.+....+||+|||.|+++|||||+++|.++|+++|+.+.++|++||++|.||+||+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae 329 (677)
T PLN02582 250 QIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAE 329 (677)
T ss_pred hCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhh
Confidence 88766778888999999998876445799999999999999999999999999999742269999999999999999999
Q ss_pred hcccccCCcccccCcccccccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHH
Q 004923 373 KAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQH 452 (723)
Q Consensus 373 ~~~~~~H~~~~fd~~~g~~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~ 452 (723)
+++.+|||..+||+++|++.+......+|+++|+++|.+++++||+|+++++||++++++..|+++||+||||+||+||+
T Consensus 330 ~~~~~~H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~ 409 (677)
T PLN02582 330 RAADKYHGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQH 409 (677)
T ss_pred cChhhcCCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHH
Confidence 99999999999999999775433335689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccC
Q 004923 453 AVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPS 532 (723)
Q Consensus 453 ~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps 532 (723)
|+++|+|||+.|+|||+++|++|++|+||||++++|++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+
T Consensus 410 ~vg~AaGLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Ps 489 (677)
T PLN02582 410 AVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPS 489 (677)
T ss_pred HHHHHHHHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCC
Q 004923 533 DEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNG 612 (723)
Q Consensus 533 d~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~G 612 (723)
|++|+..++++|+...++|++||++|+..+...+|.....+.+++|+++++++|+|++||++|++++.|++|++.|+++|
T Consensus 490 d~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~G 569 (677)
T PLN02582 490 DEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHG 569 (677)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcC
Confidence 99999999999987667999999999864333333322235678999999999999999999999999999999999999
Q ss_pred CceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHH
Q 004923 613 LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLA 692 (723)
Q Consensus 613 i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~ 692 (723)
|+++|||++|++|||++++.+++++++.+||+|++..||||++|++++.+++....+.+++++|++|+|+++|+++++++
T Consensus 570 I~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~ 649 (677)
T PLN02582 570 LSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLA 649 (677)
T ss_pred CCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHH
Confidence 99999999999999999999999999999999999889999999999999875323468999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhcchhHHhhh
Q 004923 693 QAGLTPSHIAATVFNILGQTREALEIM 719 (723)
Q Consensus 693 ~~gl~~e~I~~~i~~ll~~~~~~~~~~ 719 (723)
++|||++.|+++|+++++..+..+++|
T Consensus 650 ~~GL~~e~I~~~i~~~l~~~~~~~~~~ 676 (677)
T PLN02582 650 EAGLTPSHIAATVLNVLGQTREALQIM 676 (677)
T ss_pred HhCcCHHHHHHHHHHHHhccccccccc
Confidence 999999999999999996555566655
No 4
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.8e-136 Score=1168.97 Aligned_cols=619 Identities=79% Similarity=1.243 Sum_probs=572.8
Q ss_pred CCccCccccccccccCCCCCCCCCCCcccccccccccccccccchHHhhhccCCCccccc-ccccccccCCCCCCCCcCC
Q 004923 1 MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCAS-LSERGEYHSQRPPTPLLDT 79 (723)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 79 (723)
|+++.|++|+|..|+++.++-++|+.+++ +++.++++ .++.++|++++|+|||||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 69 (641)
T PLN02234 13 MALSVFAFPSYINRNPSLKYLKPSSMSST-----------------------KYSKVRATTFSEKGEYYSNRPPTPLLDT 69 (641)
T ss_pred HHHHhhhchhhhccCCccceecccccccc-----------------------ccceeEEEccCCcccccCCCCCCchhhh
Confidence 57889999999999999999999988544 23333333 4455589899999999999
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCChh
Q 004923 80 INYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRD 159 (723)
Q Consensus 80 i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~ 159 (723)
|++|.|||+|++++|+++|++||+++++++++++||+|+|||++||+++||++|++|+||||||+|||+|+||++|||++
T Consensus 70 i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~ 149 (641)
T PLN02234 70 INHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRG 149 (641)
T ss_pred cCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhh
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCC
Q 004923 160 KMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD 239 (723)
Q Consensus 160 ~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~n 239 (723)
+|++|||.||++|||++.|++++.|++||+|+|||+|+|||+|+++++.+++|||++||||++||++|||||+|++.++|
T Consensus 150 ~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~n 229 (641)
T PLN02234 150 KMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSN 229 (641)
T ss_pred hhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccc
Q 004923 240 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 319 (723)
Q Consensus 240 li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~ 319 (723)
|++|+|||+++++||...+|+++++++++++|+++++++.|.. +... +
T Consensus 230 livIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~----------------~ 277 (641)
T PLN02234 230 MIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS----------------T 277 (641)
T ss_pred EEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH----------------H
Confidence 9999999998899998889999999999999999999988721 1122 3
Q ss_pred hhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCcccccccCcchhh
Q 004923 320 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQ 399 (723)
Q Consensus 320 lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g~~~~~~~~~~ 399 (723)
+||+|||+|+++|||||+++|.++|++++..+.++|++||++|+||+|++++|+++++||+..+||+++|++.+......
T Consensus 278 ~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~ 357 (641)
T PLN02234 278 LFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQ 357 (641)
T ss_pred HHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCC
Confidence 49999999999999999999999999998753468999999999999999999988899999999999998876544457
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHH
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRA 479 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra 479 (723)
+|+++|+++|.+++++||+|+++++||+++++++.|+++||+||||+||+||+|+++|+|||++|+|||+++|++|++|+
T Consensus 358 sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA 437 (641)
T PLN02234 358 SYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRA 437 (641)
T ss_pred CHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCC
Q 004923 480 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRG 559 (723)
Q Consensus 480 ~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~ 559 (723)
||||+++++++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+|+.|++.++++|+..+++|++||++|+
T Consensus 438 ~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~ 517 (641)
T PLN02234 438 YDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRG 517 (641)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecc
Confidence 99999999999999999999999889999999999999999999999999999999999999999877779999999998
Q ss_pred CCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCC
Q 004923 560 NGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (723)
Q Consensus 560 ~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~ 639 (723)
......+|+..+.+++++|+++++++|+|++||++|++++.|++|+++|+++||+++|||++||+|||++++++++++++
T Consensus 518 ~~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~ 597 (641)
T PLN02234 518 NGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHE 597 (641)
T ss_pred cccccccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCC
Confidence 75443344322335678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEE
Q 004923 640 VLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRP 674 (723)
Q Consensus 640 ~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~ 674 (723)
.|||+|++..||||++|+++++++++++...++.+
T Consensus 598 ~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 598 VLITVEEGSIGGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999889999999999999998877666654
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=8.4e-126 Score=1095.08 Aligned_cols=615 Identities=53% Similarity=0.858 Sum_probs=572.0
Q ss_pred cCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcC
Q 004923 77 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTG 156 (723)
Q Consensus 77 l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G 156 (723)
|++|++|.|||+|+.++|+++|.+||+++++|+++++||+|++||++||+++||++|+.|+||||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhc
Q 004923 157 RRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL 236 (723)
Q Consensus 157 ~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~ 236 (723)
|+++|++|||.|+++|||++.|++++.|++||+|+++|+|+|||+|.++++.+.+|||++|||+++||++|||+|+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCC
Q 004923 237 DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 316 (723)
Q Consensus 237 ~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~ 316 (723)
++|+++|||||++ ++ ..+++.++++|+++|.++.|..++...+.+.+.++.-...+++|+++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~-~i--------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~- 230 (617)
T TIGR00204 161 KTDMIVILNDNEM-SI--------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP- 230 (617)
T ss_pred CCCEEEEEECCCc-cc--------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc-
Confidence 9999999999994 43 3457889999999999999999999999888765433334788899999998876
Q ss_pred ccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCcccccccCcc
Q 004923 317 GSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSA 396 (723)
Q Consensus 317 ~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g~~~~~~~ 396 (723)
.++||+|||+|+++|||||+++|.++|+++++ .++|++||++|+||+||+++|+++.+||+..+|+++++.......
T Consensus 231 -~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 231 -GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred -cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 38999999999999999999999999999987 468999999999999999999888889999999998875433223
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHH
Q 004923 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM 476 (723)
Q Consensus 397 ~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl 476 (723)
...+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+||+|+++|+|||+.|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 34689999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+|+||||++++|++++||+++++++|++|.||+|||+++|+++++++|||+|++|+|+.|++.++++|++..++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999889999999999999999999999999999999999999999975569999999
Q ss_pred cCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc
Q 004923 557 PRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 636 (723)
Q Consensus 557 ~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~ 636 (723)
+|+.......++ ..+.+++|++.++++|.|++||++|++++.|++|+++|+++||+++|||++|++|||++++.++++
T Consensus 468 ~r~~~~~~~~~~--~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 468 PRGNAVGVELTP--EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred ccCCcCCcccCC--ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 998653322222 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 637 SHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 637 ~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
+++++||+||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++++
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 999999999998 79999999999999863 46899999999999999999999999999999999999875
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.5e-125 Score=1094.12 Aligned_cols=629 Identities=60% Similarity=0.969 Sum_probs=583.5
Q ss_pred CCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 004923 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (723)
Q Consensus 71 ~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~ 150 (723)
+|..|+|++|++|.|||+|+.++|+++|++||.++++|+++.+||+|++||++||+++||++|++|+||||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 56678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH
Q 004923 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (723)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl 230 (723)
|++|+||+++|++|||.||++|||++.|+++++++.||.|++++.|+|+|+|.++.+.+++|||++|||++++|++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhh
Q 004923 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (723)
Q Consensus 231 n~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (723)
++|+.+++|+++|+|||++ ++ ..+++.++++|++++.++.|+.+|+..+++.+.++..+..+.+++++.++
T Consensus 163 ~~a~~~~~~li~I~dnN~~-~i--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEM-SI--------APPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVT 233 (641)
T ss_pred HHHHHhCCCEEEEEECCCe-ee--------cCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Confidence 9999999999999999994 43 23578899999999999999999999999999998888888889999999
Q ss_pred cccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCcccc
Q 004923 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK 390 (723)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g~ 390 (723)
.++.+ ..+|++|||+|+++|||||+++|.++|+++++. .++|++||++|+||+|++++|+++.+|||.++|++.+++
T Consensus 234 ~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~ 310 (641)
T PRK12571 234 GMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGL 310 (641)
T ss_pred hccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCc
Confidence 88765 478999999999899999999999999999863 378999999999999999999988899999999999886
Q ss_pred cccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEe
Q 004923 391 QFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 470 (723)
Q Consensus 391 ~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~ 470 (723)
+.+.+....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 54433345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCC
Q 004923 471 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (723)
Q Consensus 471 t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~ 550 (723)
||++|++|++|||++++|++++||+++++++|++|+||+|||+++|++++|++|||+|++|+|++|++.++++|++.+++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999875689
Q ss_pred CEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH
Q 004923 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (723)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~ 630 (723)
|+|||++|+..+...+|. ..+.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+++++|||+++
T Consensus 471 P~~ir~~r~~~~~~~~~~--~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA--EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred cEEEEEecCcCCccccCC--CCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 999999998654333332 235678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 631 IRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 631 i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
+.++++++ .++++||+. .||||++|++++.++++.+.+.+++++|++|.|+++|+.+++++++|+|+++|+++|++++
T Consensus 549 i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l 627 (641)
T PRK12571 549 TDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGAL 627 (641)
T ss_pred HHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 98888777 466666665 7999999999999988755567899999999999999999999999999999999999998
Q ss_pred hcchh
Q 004923 710 GQTRE 714 (723)
Q Consensus 710 ~~~~~ 714 (723)
+..+.
T Consensus 628 ~~~~~ 632 (641)
T PRK12571 628 ARLSG 632 (641)
T ss_pred HhccC
Confidence 76654
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.5e-117 Score=1019.24 Aligned_cols=577 Identities=37% Similarity=0.627 Sum_probs=525.5
Q ss_pred CcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHc
Q 004923 76 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILT 155 (723)
Q Consensus 76 ~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~ 155 (723)
||++|++|.|||+|+.+||++||++||.++++.+++++||++++||++|++++||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhh
Q 004923 156 GRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY 235 (723)
Q Consensus 156 G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~ 235 (723)
||+..+.+.|++|+++||+++.|++++.++.||.|+++|+|+|||+|+++++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCC
Q 004923 236 LDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISG 315 (723)
Q Consensus 236 ~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~ 315 (723)
|++|+|+|||||++ ++. .+++.++..+.+++.++. .
T Consensus 162 ~k~~li~Ii~dN~~-si~--------~~~~~~~~~l~~~~~~~~-------------------~---------------- 197 (581)
T PRK12315 162 LKSNLIIIVNDNQM-SIA--------ENHGGLYKNLKELRDTNG-------------------Q---------------- 197 (581)
T ss_pred hCCCEEEEEECCCC-cCC--------CCCchhhhhhhhhhhccc-------------------c----------------
Confidence 99999999999994 442 234445444443222110 0
Q ss_pred CccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCcccccccCc
Q 004923 316 SGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSS 395 (723)
Q Consensus 316 ~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g~~~~~~ 395 (723)
+...+|++|||++++++||||++++.++++++++ .++|++||++|+||+||+++++++.+||+..+|+..+++..++.
T Consensus 198 ~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 275 (581)
T PRK12315 198 SENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA 275 (581)
T ss_pred cHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC
Confidence 1123489999999987899999999999999987 57999999999999999887778889999989998887644322
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHH
Q 004923 396 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSF 475 (723)
Q Consensus 396 ~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~F 475 (723)
...+|+++|+++|.+++++|++++++++|+++++++..|+++||+||||+||+||+|+++|+|+|+.|++||+.+|++|
T Consensus 276 -~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 276 -SGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred -CCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 2458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEE
Q 004923 476 MQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (723)
Q Consensus 476 l~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 555 (723)
++||||||++++|++++||+++++++|+++ ||+|||+++|+++||++|||+|++|+|+.|+..++++|++..++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999877 9999999999999999999999999999999999999987557999999
Q ss_pred ecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhC-CCceEEeecCccccccHHHHHHH
Q 004923 556 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALIRSL 634 (723)
Q Consensus 556 ~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~ikP~d~~~i~~~ 634 (723)
++|+.......+ ...++.+++.++++|+|++||++|++++.|++|++.|+++ ||+++|||++|++|||++.+.++
T Consensus 434 ~~r~~~~~~~~~----~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~ 509 (581)
T PRK12315 434 VPEHGVESGPTV----DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKL 509 (581)
T ss_pred EcCCccCCCCCC----ccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHH
Confidence 999875432111 1234456889999999999999999999999999999988 99999999999999999999999
Q ss_pred hcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 635 AKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 635 ~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
.++++.+||+||+. .||||++|++++.+++ .+++++|++|+|+++|+++++++++|||+++|+++|++++
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999997 6999999999998763 4789999999999999999999999999999999999875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.1e-112 Score=982.70 Aligned_cols=576 Identities=63% Similarity=0.982 Sum_probs=521.9
Q ss_pred CCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 004923 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (723)
Q Consensus 71 ~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~ 150 (723)
++..|||++|++|.|||+|+.++|+++|++||.++++|+.+++||+|++||++|++++||++|+.+|||||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 46679999999999999999999999999999999999988899999999999999999999998999999999999999
Q ss_pred HHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhc-CCCCeEEEEEcCCcccccchHHH
Q 004923 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-GRKNNVVAVIGDGAMTAGQAYEA 229 (723)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~-g~~~~vv~viGDGa~~~G~~~EA 229 (723)
+++++|++++|++||+.|+++|||++.+++++.+++|++|+++|+|+|+|+|.+++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999899999999999999999999999999998 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh
Q 004923 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (723)
Q Consensus 230 ln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (723)
+++|+++++|+++|+|||++ ++. +++. .....+. ..++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~-~i~-----~~~~---~~~~~~~-------------------------~~~~~------- 199 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEM-SIS-----PNVG---ALSNYLA-------------------------RLRSS------- 199 (580)
T ss_pred HHHHHhhCCCEEEEEECCCC-cCC-----Ccch---hhhhhhc-------------------------cccHH-------
Confidence 99999999999999999984 331 1111 1100000 01112
Q ss_pred hcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCccc
Q 004923 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATG 389 (723)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g 389 (723)
.+|++|||+++.++||||+++|.++++++++ .++|++|+++|.||+|++++|+++.+||+.++|+...+
T Consensus 200 ---------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~ 268 (580)
T PRK05444 200 ---------TLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETG 268 (580)
T ss_pred ---------HHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccC
Confidence 3489999999877899999999999999987 47999999999999999999887778999999987766
Q ss_pred ccccC-cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeE
Q 004923 390 KQFKS-SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF 468 (723)
Q Consensus 390 ~~~~~-~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~ 468 (723)
+...+ .....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|+|+.|++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~ 348 (580)
T PRK05444 269 EQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPV 348 (580)
T ss_pred CccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeE
Confidence 43322 11226899999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhC
Q 004923 469 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 548 (723)
Q Consensus 469 ~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~ 548 (723)
++||++|++|++|||+++++++++||+++++++|++|+||+|||+++|++++|++||++|++|+|++|+..++++|++.+
T Consensus 349 ~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~ 428 (580)
T PRK05444 349 VAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD 428 (580)
T ss_pred EEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999766
Q ss_pred CCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccH
Q 004923 549 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH 628 (723)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~ 628 (723)
++|+|||++|+..+....+ +.+.+++|+++++++|+|++||++|++++.|++|+++|+ +++|||++|++|||+
T Consensus 429 ~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 429 DGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCcEEEEecCCCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 8999999999875432222 135788999999999999999999999999999999995 899999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004923 629 ALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 707 (723)
Q Consensus 629 ~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ 707 (723)
+++.+++++++++|++||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|++
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 578 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILE 578 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999998 59999999999998865 468999999999999999999999999999999999987
Q ss_pred H
Q 004923 708 I 708 (723)
Q Consensus 708 l 708 (723)
+
T Consensus 579 ~ 579 (580)
T PRK05444 579 L 579 (580)
T ss_pred h
Confidence 5
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-102 Score=847.03 Aligned_cols=605 Identities=34% Similarity=0.463 Sum_probs=513.4
Q ss_pred CCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhh-ccC----CC----CcEEEeCC
Q 004923 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHY-VFN----AP----KDRILWDV 144 (723)
Q Consensus 74 ~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~-~~~----~p----~D~~i~s~ 144 (723)
||.+++++.+.+++|+.+.+++.+++ ..+||+++++|.+++...||. +++ +| +||||||+
T Consensus 2 ~~~~~~~~~~~~~n~lri~si~~~~~-----------a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~ 70 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILSIDATSA-----------AKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSN 70 (632)
T ss_pred CchhhhhhhHHHhhhhhhhhHHHHHh-----------hhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEec
Confidence 56677777777777766555555444 366999999999999999975 332 23 79999999
Q ss_pred CchH---HHHHHHcC--ChhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC-CCeEEEEEc
Q 004923 145 GHQT---YPHKILTG--RRDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVIG 217 (723)
Q Consensus 145 GH~~---y~~~~l~G--~~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~-~~~vv~viG 217 (723)
||+| |+|++|+| ++++|.+|||.+| ..|||.+ +++++.+++||+|++|++|+|||++++++++ +++|||++|
T Consensus 71 GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlG 149 (632)
T KOG0523|consen 71 GHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLG 149 (632)
T ss_pred cccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcc-cCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEc
Confidence 9999 99999999 6899999999998 5788875 7999999999999999999999999999999 999999999
Q ss_pred CCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCc
Q 004923 218 DGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGP 297 (723)
Q Consensus 218 DGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~ 297 (723)
||+++||++||||++|++++++.+++++||+++++++++..|...++..++-... .|+.....|.+
T Consensus 150 DG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~--------------g~~~~~V~~~d 215 (632)
T KOG0523|consen 150 DGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAF--------------GWNVIIVDGGD 215 (632)
T ss_pred CchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHh--------------CceEEEEcCcC
Confidence 9999999999999999999955555555555589988888888887766533333 33333444555
Q ss_pred hHHHHHHHHH--HhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcc
Q 004923 298 MHELAAKVDE--YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAA 375 (723)
Q Consensus 298 ~~~~~~k~~~--~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~ 375 (723)
++.+.+.+.+ +++++...-..+.|+++|+.+++++++|......+.++++++..+- |+++++.+.+++++|..+...
T Consensus 216 ~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~ 294 (632)
T KOG0523|consen 216 VDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVED 294 (632)
T ss_pred HHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCccccc
Confidence 5666655544 4588877778899999999999999999999888888888776444 999999999999998665432
Q ss_pred --cccCCcccccCcccccccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHH
Q 004923 376 --DKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHA 453 (723)
Q Consensus 376 --~~~H~~~~fd~~~g~~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~ 453 (723)
...|.++.+++++..+++..++...++++|.++|.++++.+|+++++++|+.+|+.++-|+++||+|||++||+||+|
T Consensus 295 ~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~m 374 (632)
T KOG0523|consen 295 ARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNM 374 (632)
T ss_pred ccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhh
Confidence 567889999999998888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-eeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEcc
Q 004923 454 VTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAP 531 (723)
Q Consensus 454 v~~AaGlA~~G~-~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~P 531 (723)
+++|+|+|..|. +|||.||+.|++||||||++ .++.+.+++++++|.++ +|+||||||++||+++||++||++|++|
T Consensus 375 v~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~-~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~P 453 (632)
T KOG0523|consen 375 VGIANGIACRGRTIPFCGTFAAFFTRAFDQVRM-GALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRP 453 (632)
T ss_pred HHhhhchhcCCCccchhHHHHHHHHHhhhheee-hhhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEec
Confidence 999999999998 99999999999999999875 47788888888888766 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceE-EeeeCC-cEEEEEecchHHHHHHHHHHHH
Q 004923 532 SDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIEGE-RVALLGYGTAVQSCLAASALLE 609 (723)
Q Consensus 532 sd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~-vl~eG~-dv~Iva~Gs~v~~al~Aa~~L~ 609 (723)
+|.+|+..++..|++.++.|++++++|++.+..+.+ ..+++||+. +++++. ||+||++|++|++|++|++.|+
T Consensus 454 aD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~-----~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~ 528 (632)
T KOG0523|consen 454 ADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNT-----EIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLS 528 (632)
T ss_pred CchHHHHHHHHHHHhcCCCeeEEEecCccccccCCC-----chhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHH
Confidence 999999999999999888899999999987654322 357799986 888887 9999999999999999999999
Q ss_pred hCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC-CCC-CChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCH
Q 004923 610 SNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE-GSI-GGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSP 687 (723)
Q Consensus 610 ~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe-~~~-gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~ 687 (723)
++||+++|||++||||||..+|+++.+.++..|+|++ +.. ||++. .++...+.+++ ..+..++ +|+|+.+|++
T Consensus 529 ~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~---~~~a~~g~~~~-~~~~~~~-~~~~~~sG~p 603 (632)
T KOG0523|consen 529 EDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEV---AVTAAWGKYPG-ILVPSLG-VDTFGRSGPP 603 (632)
T ss_pred hcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhh---eeeehhcccCC-ccceeec-cccCCcCCCC
Confidence 9999999999999999999999999998875555555 443 44443 33333333322 2233444 6999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcchhHH
Q 004923 688 ADQLAQAGLTPSHIAATVFNILGQTREAL 716 (723)
Q Consensus 688 ~el~~~~gl~~e~I~~~i~~ll~~~~~~~ 716 (723)
.|+|++|||++++|++++++++++.|+++
T Consensus 604 ~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 604 PELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999988764
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=7.5e-97 Score=859.98 Aligned_cols=540 Identities=23% Similarity=0.329 Sum_probs=457.0
Q ss_pred HHHHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhh-c--cCC------CCcEEEeCCCchH---HHHHHHcCCh-
Q 004923 93 ELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-V--FNA------PKDRILWDVGHQT---YPHKILTGRR- 158 (723)
Q Consensus 93 ~l~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~-~--~~~------p~D~~i~s~GH~~---y~~~~l~G~~- 158 (723)
.++++|++||.++++|++ +++||+|++||++|++++||+ + |+. +|||||||+||++ |++++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 357789999999999996 589999999999999999996 5 432 4899999999999 9999999984
Q ss_pred --hHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcccccc
Q 004923 159 --DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQ 225 (723)
Q Consensus 159 --~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~~~G~ 225 (723)
++|.+||+.++ ++|||++.+++++.+++||+|+++|.|+|||+|+|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 88999999998 689999988999999999999999999999999999764 78999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHH
Q 004923 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (723)
Q Consensus 226 ~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 304 (723)
+|||+|+|+.+++ |||+|+|||++ ++ ++++... . .+++.++
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~-~i-----~~~~~~~--~------------------------------~~~~~~~ 206 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKI-TI-----DGNTDLS--F------------------------------TEDVEKK 206 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCc-cc-----ccCcccc--c------------------------------CccHHHH
Confidence 9999999999995 69999999994 44 2222100 0 0233333
Q ss_pred HHHHhhcccCCCccchhhccCCeEEEecCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc
Q 004923 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK 383 (723)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vDGh-d~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~ 383 (723)
|++|||+++.++||| |+++|.++++++++. .++|++||++|+||+|+ . ++++.+|||.++
T Consensus 207 ----------------f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~-~e~~~~~H~~~~ 267 (661)
T PTZ00089 207 ----------------YEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-S-KAGTEKVHGAPL 267 (661)
T ss_pred ----------------HHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-C-cCCCCCccCCCC
Confidence 999999999766999 999999999999863 36899999999999994 4 445678999862
Q ss_pred -------------------ccCc--cc----------ccc----------------------------------------
Q 004923 384 -------------------FDPA--TG----------KQF---------------------------------------- 392 (723)
Q Consensus 384 -------------------fd~~--~g----------~~~---------------------------------------- 392 (723)
|++. .. +..
T Consensus 268 ~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (661)
T PTZ00089 268 GDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPK 347 (661)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhh
Confidence 5442 00 000
Q ss_pred -cCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhhhCC-CceeeccccHHHHHHHHHHHHh-cC
Q 004923 393 -KSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFP-TRCFDVGIAEQHAVTFAAGLAC-EG 464 (723)
Q Consensus 393 -~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p-~R~id~GIaE~~~v~~AaGlA~-~G 464 (723)
..+.+..+.+++++++|.++++.+|+++..++|+.+|+.+ ..|+++|| +||||+||+||+|+++|+|||+ .|
T Consensus 348 ~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G 427 (661)
T PTZ00089 348 YTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGG 427 (661)
T ss_pred hcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCC
Confidence 0001123467788888899999999999999999888865 37999999 8999999999999999999999 78
Q ss_pred CeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 465 LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 465 ~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
++||++||++|++|++||| +++|++++||++++++.|+ +|+||||||+++|+++||++|||+|++|+|++|+..++++
T Consensus 428 ~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~ 506 (661)
T PTZ00089 428 FIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYAL 506 (661)
T ss_pred CeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHH
Confidence 9999999999999999995 6779999999999988876 7999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeC---CcEEEEEecchHHHHHHHHHHHHhCCCceEEeec
Q 004923 544 AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG---ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG---~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~ 620 (723)
|+...++|+|||++|+..+.. +. ....+..+++++++++ .|++||++|+++..|++|++.|++ ||+++|||+
T Consensus 507 al~~~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~ 581 (661)
T PTZ00089 507 ALANAKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSM 581 (661)
T ss_pred HHHcCCCCEEEEecCCCCCCc--CC--CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeC
Confidence 997678999999999875432 11 1223345666899975 799999999999999999999999 999999999
Q ss_pred CccccccHHHHHHH---hc-CCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC
Q 004923 621 RFCKPLDHALIRSL---AK-SHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 696 (723)
Q Consensus 621 ~~ikP~d~~~i~~~---~~-~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl 696 (723)
+|++|||.+.+... +. +...+|++|++...||.. + ..+++|+++ |+.+|+.+++++++||
T Consensus 582 ~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~Gl 645 (661)
T PTZ00089 582 PCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFGF 645 (661)
T ss_pred CCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhCC
Confidence 99999999986533 45 455799999998666531 0 114789988 9999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 004923 697 TPSHIAATVFNILGQ 711 (723)
Q Consensus 697 ~~e~I~~~i~~ll~~ 711 (723)
|++.|+++|++++.+
T Consensus 646 ~~e~I~~~i~~~l~~ 660 (661)
T PTZ00089 646 TVENVVEKARALAAR 660 (661)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 11
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.1e-96 Score=854.54 Aligned_cols=542 Identities=21% Similarity=0.281 Sum_probs=454.2
Q ss_pred HHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhhcc-C----C----CCcEEEeCCCchH---HHHHHHcCCh---
Q 004923 95 KQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVF-N----A----PKDRILWDVGHQT---YPHKILTGRR--- 158 (723)
Q Consensus 95 ~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~~~-~----~----p~D~~i~s~GH~~---y~~~~l~G~~--- 158 (723)
+++|++||+++++|+++ ++||+|++||++|++++||+.+ + + +|||||||+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 56799999999999985 8999999999999999999643 2 2 2799999999999 9999999973
Q ss_pred hHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcccccchH
Q 004923 159 DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAY 227 (723)
Q Consensus 159 ~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~~~G~~~ 227 (723)
++|++|||.|+ ++|||+...+++..+++|++|++++.|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 89999999998 699999877888889999999999999999999998863 6899999999999999999
Q ss_pred HHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHH
Q 004923 228 EAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 306 (723)
Q Consensus 228 EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~ 306 (723)
||+|+|+.+++ ||++|+|||++ ++ ++++..+ + .+++.++
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~-~i-----~~~~~~~--~------------------------------~~~~~~~-- 204 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGI-SI-----DGETEGW--F------------------------------TDDTAKR-- 204 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC-cC-----CCChhhh--c------------------------------ChhHHHH--
Confidence 99999999996 69999999994 54 3322210 0 0334444
Q ss_pred HHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc----
Q 004923 307 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA---- 382 (723)
Q Consensus 307 ~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~---- 382 (723)
|++|||+++.+|||||+++|.+++++++.. .++|++|+++|+||+|++++|+. .+|||.+
T Consensus 205 --------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~-~~~H~~~l~~~ 268 (663)
T PRK12753 205 --------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGK-EESHGAPLGEE 268 (663)
T ss_pred --------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCC-CCccCCCCCHH
Confidence 999999998668999999999999998863 47999999999999999998754 6899843
Q ss_pred --------------cccCc-----------ccccc------------------------------cC-------------
Q 004923 383 --------------KFDPA-----------TGKQF------------------------------KS------------- 394 (723)
Q Consensus 383 --------------~fd~~-----------~g~~~------------------------------~~------------- 394 (723)
+|+.. ++++. +.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12753 269 EVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINEL 348 (663)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 34431 12110 00
Q ss_pred --cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhhhCCCceeeccccHHHHHHHHHHHHh-cCCe
Q 004923 395 --SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLK 466 (723)
Q Consensus 395 --~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p~R~id~GIaE~~~v~~AaGlA~-~G~~ 466 (723)
+.+....+++++++|.++++.+|+++++++|+.+|+.+ ..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 349 QANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred hccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 01122456688889999999999999999999988866 789999999999999999999999999999 7899
Q ss_pred eEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHH
Q 004923 467 PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAA 545 (723)
Q Consensus 467 p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~ 545 (723)
||++||++|++|++|||+. .|++++||++++++.|+ +|+||+|||+++|++++|.+|||+|++|+|++|+..++..|+
T Consensus 429 P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al 507 (663)
T PRK12753 429 PYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAI 507 (663)
T ss_pred EEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHH
Confidence 9999999999999999985 59999999999999988 799999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEecCCCCccccCCCCCC-CCCcccCceEEeeeCC---cEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 546 AIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 546 ~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+..++|+|||++|++.+.. +.... ...+..|+ +++++|. |++||++|++|++|++|+++|+++||+++|||++
T Consensus 508 ~~~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~ 584 (663)
T PRK12753 508 ERHNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMP 584 (663)
T ss_pred hcCCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 7668999999999875432 11100 12234444 8899864 9999999999999999999999999999999999
Q ss_pred ccccccHHHH--HH-HhcC-CCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCC
Q 004923 622 FCKPLDHALI--RS-LAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLT 697 (723)
Q Consensus 622 ~ikP~d~~~i--~~-~~~~-~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~ 697 (723)
|++|||.+.+ ++ ++.. ....|++|++...+|. .+. ..+.+++|+ |+|+.+|+++++++++|||
T Consensus 585 ~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~----~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~Glt 651 (663)
T PRK12753 585 STDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWY----KYV--------GLKGAIIGM-TGFGESAPADKLFPFFGFT 651 (663)
T ss_pred cCCccchhHHHHHHhhcccccceEEEEccChHHHHH----HHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhCCC
Confidence 9999999976 22 2332 2245999998433332 221 235678898 7999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004923 698 PSHIAATVFNIL 709 (723)
Q Consensus 698 ~e~I~~~i~~ll 709 (723)
+++|++++++++
T Consensus 652 ~~~Iv~~i~~~~ 663 (663)
T PRK12753 652 VENIVAKAKKLL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 12
>PLN02790 transketolase
Probab=100.00 E-value=8.6e-96 Score=850.18 Aligned_cols=535 Identities=22% Similarity=0.328 Sum_probs=453.1
Q ss_pred HHHHHHHHhh-hcCCCCCCcccHHHHHHHHhhc---cCC------CCcEEEeCCCchH---HHHHHHcCCh----hHhHH
Q 004923 101 LRADVIFNVS-KTGGHLGSSLGVIELTVALHYV---FNA------PKDRILWDVGHQT---YPHKILTGRR----DKMHT 163 (723)
Q Consensus 101 iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~~---~~~------p~D~~i~s~GH~~---y~~~~l~G~~----~~l~~ 163 (723)
||.++++|++ +++||+|++||++|++++||+. |+. +|||||||+||++ |++++++|+. ++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6999999996 5899999999999999999976 442 4899999999999 9999999996 88999
Q ss_pred HHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhc-----CC-----CCeEEEEEcCCcccccchHHHHHH
Q 004923 164 MRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-----GR-----KNNVVAVIGDGAMTAGQAYEAMNN 232 (723)
Q Consensus 164 ~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~-----g~-----~~~vv~viGDGa~~~G~~~EAln~ 232 (723)
|||.|++ +|||++.+++++.+++|++|+++|.|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999985 699999899999999999999999999999999963 32 689999999999999999999999
Q ss_pred hhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhc
Q 004923 233 AGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 311 (723)
Q Consensus 233 A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~ 311 (723)
|+.+++ ||++|+|||++ ++.+ ++. .. ..+++.++
T Consensus 161 A~~~~L~nli~i~d~N~~-~i~~-----~~~---~~-----------------------------~~~~~~~~------- 195 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHI-SIDG-----DTE---IA-----------------------------FTEDVDKR------- 195 (654)
T ss_pred HHHhCCCCEEEEEecCCc-cccC-----Ccc---cc-----------------------------cchhHHHH-------
Confidence 999995 69999999994 4422 211 00 01334444
Q ss_pred ccCCCccchhhccCCeEEEecCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc--------
Q 004923 312 MISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-------- 382 (723)
Q Consensus 312 ~~~~~~~~lfea~G~~~~~~vDG-hd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~-------- 382 (723)
|++|||+++.+.|| ||+++|.++++++++. .++|++||++|+||+|++++| ++.+|||.+
T Consensus 196 ---------f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e-~~~~~H~~~~~~~~~~~ 264 (654)
T PLN02790 196 ---------YEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKA-NSYSVHGAALGEKEVDA 264 (654)
T ss_pred ---------HHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCcccc-CCCCcCCCCCCHHHHHH
Confidence 99999999965455 8999999999999863 479999999999999999855 457899986
Q ss_pred ----------cccCcccc-c-c----c------------------C-----------------------------cchhh
Q 004923 383 ----------KFDPATGK-Q-F----K------------------S-----------------------------SARTQ 399 (723)
Q Consensus 383 ----------~fd~~~g~-~-~----~------------------~-----------------------------~~~~~ 399 (723)
+|+..++. . + . . +.+..
T Consensus 265 ~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (654)
T PLN02790 265 TRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPAD 344 (654)
T ss_pred HHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcch
Confidence 45543210 0 0 0 0 00112
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC-----hhhhhhh-CCCceeeccccHHHHHHHHHHHHhc--CCeeEEee
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRR-FPTRCFDVGIAEQHAVTFAAGLACE--GLKPFCAI 471 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~-~p~R~id~GIaE~~~v~~AaGlA~~--G~~p~~~t 471 (723)
..++++++.|.++.+.+|++++.++|+.+|+. +..|+++ +|+||||+||+||+|+++|+|||++ |++||++|
T Consensus 345 a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~t 424 (654)
T PLN02790 345 ATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCAT 424 (654)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEe
Confidence 45677888899999999999999999988864 6789998 5999999999999999999999996 59999999
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCC
Q 004923 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (723)
Q Consensus 472 ~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~ 550 (723)
|+.|+.|+++|+ +++|++++||+++++|.|+ +|+||||||+++|+++||++||++|++|+|++|+..++++|+...++
T Consensus 425 f~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 425 FFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKR 503 (654)
T ss_pred cHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCC
Confidence 999999999997 5679999999999988776 79999999999999999999999999999999999999999876789
Q ss_pred CEEEEecCCCCccccCCCCCCCCCcccCceEEeeeC-----CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCcccc
Q 004923 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG-----ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 625 (723)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG-----~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP 625 (723)
|+|||++|+..+.. +.. ....++.|+ ++++++ .|++||++|++++.|++|++.|+++||+++|||++|++|
T Consensus 504 P~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikp 579 (654)
T PLN02790 504 PTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWEL 579 (654)
T ss_pred CEEEEecCCCCCCC--CCC-cccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccch
Confidence 99999999875432 111 124567786 777774 799999999999999999999999999999999999999
Q ss_pred ccHHHHH---HHh-cCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHH
Q 004923 626 LDHALIR---SLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 701 (723)
Q Consensus 626 ~d~~~i~---~~~-~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I 701 (723)
||.+.+. +++ ++++.+|++|+++.+||++ ++. .+.+++|+ |+|+.+|+.+++++++|||+++|
T Consensus 580 ld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~----~~~--------~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~I 646 (654)
T PLN02790 580 FEEQSDEYKESVLPSSVTARVSVEAGSTFGWEK----YVG--------SKGKVIGV-DRFGASAPAGILYKEFGFTVENV 646 (654)
T ss_pred hhhhHHHHHHhhhccccceEEEecCccchhHHH----hcC--------CCceEEEe-CCCcCcCCHHHHHHHhCCCHHHH
Confidence 9998754 667 6777899999998888874 211 23467888 99999999999999999999999
Q ss_pred HHHHHHHH
Q 004923 702 AATVFNIL 709 (723)
Q Consensus 702 ~~~i~~ll 709 (723)
+++|++++
T Consensus 647 ~~~i~~~~ 654 (654)
T PLN02790 647 VAAAKSLL 654 (654)
T ss_pred HHHHHHhC
Confidence 99998753
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1e-93 Score=834.23 Aligned_cols=546 Identities=25% Similarity=0.373 Sum_probs=466.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhh-ccC----C----CCcEEEeCCCchH---HHHHHHc
Q 004923 89 LSIRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-VFN----A----PKDRILWDVGHQT---YPHKILT 155 (723)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~-~~~----~----p~D~~i~s~GH~~---y~~~~l~ 155 (723)
|++++|+++|+++|+++++|+. +++||+|++||++|++++||+ +|+ + ++||||||+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 6788999999999999999996 589999999999999999996 543 2 3899999999999 9999999
Q ss_pred CC---hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcc
Q 004923 156 GR---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAM 221 (723)
Q Consensus 156 G~---~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~ 221 (723)
|+ +++|.+||++++ +.|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 899999999998 699999888899999999999999999999999998887 8999999999999
Q ss_pred cccchHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHH
Q 004923 222 TAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE 300 (723)
Q Consensus 222 ~~G~~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~ 300 (723)
++|++|||+++|+.+++ |+++|+|||++ ++. ++.... . ..+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~-~~~-----~~~~~~--~------------------------------~~~ 204 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRI-SID-----GPTEGW--F------------------------------TED 204 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCC-ccc-----cccccc--c------------------------------ccc
Confidence 99999999999999996 58999999984 331 111100 0 012
Q ss_pred HHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCC
Q 004923 301 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHG 380 (723)
Q Consensus 301 ~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~ 380 (723)
+. .+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||+
T Consensus 205 ~~----------------~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~-~~~~H~ 264 (624)
T PRK05899 205 VK----------------KRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG-THKVHG 264 (624)
T ss_pred HH----------------HHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC-CCcccC
Confidence 22 34999999988 5899999999999999986 4689999999999999999884 467998
Q ss_pred cccccCc--c-----c---ccc--c-------------Ccc-----------hhhHHHHHHHHHHHHHHhcCCCEEEEec
Q 004923 381 VAKFDPA--T-----G---KQF--K-------------SSA-----------RTQSYTTYFAEALIAEAEVDKDVVAIHA 424 (723)
Q Consensus 381 ~~~fd~~--~-----g---~~~--~-------------~~~-----------~~~~~~~~~~~aL~~~~~~d~~iv~i~a 424 (723)
.++.+.+ . + +.+ + ... ...+++++|+++|.+++++||+++++++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~ 344 (624)
T PRK05899 265 APLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSA 344 (624)
T ss_pred CCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 7643211 0 0 000 0 001 1123489999999999999999999999
Q ss_pred cCCCCcChhhhh------hhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEE
Q 004923 425 AMGGGTGLNLFL------RRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFA 497 (723)
Q Consensus 425 D~~gs~~l~~f~------~~~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v 497 (723)
|+++++++..|. ++||+||||+||+|++|+++|+|+|+.| ++||++||++|++|+++|+.+. +++++||+++
T Consensus 345 D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v 423 (624)
T PRK05899 345 DLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYV 423 (624)
T ss_pred CCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEE
Confidence 999888887766 6899999999999999999999999999 9999999999999999999875 8999999999
Q ss_pred eeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcc
Q 004923 498 MDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE 576 (723)
Q Consensus 498 ~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~ 576 (723)
++++|+ +|.+|+|||+++|+++||++||++|++|+|++|+..++++|++..++|+|||++|+..+.. .+....+.++
T Consensus 424 ~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~--~~~~~~~~~~ 501 (624)
T PRK05899 424 FTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL--ERTAQEEGVA 501 (624)
T ss_pred EECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCc--CCcccccccc
Confidence 999998 6889999999999999999999999999999999999999997558999999999764321 1100124677
Q ss_pred cCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHH---HHHHHh-cCCCEEEEEcCCCCCCh
Q 004923 577 VGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLA-KSHEVLITVEEGSIGGF 652 (723)
Q Consensus 577 ~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~---~i~~~~-~~~~~vvvvEe~~~gG~ 652 (723)
.|+ +++++|.|++||++|+++++|++|+++|+++||+++|||++|++|||++ .+...+ ..+..+|++|++..+||
T Consensus 502 ~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~ 580 (624)
T PRK05899 502 KGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGW 580 (624)
T ss_pred CCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccch
Confidence 786 8899999999999999999999999999999999999999999999998 355556 45567888998877888
Q ss_pred HHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 653 GSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 653 g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
. .++ +.+++++|++| |+.+|+++++++++|||+++|+++|++++
T Consensus 581 ~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 581 Y----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred h----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 2 222 23668999999 99999999999999999999999998753
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=9.2e-93 Score=818.63 Aligned_cols=544 Identities=22% Similarity=0.309 Sum_probs=456.9
Q ss_pred HHHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhhc-cC----CC----CcEEEeCCCchH---HHHHHHcCC---
Q 004923 94 LKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWDVGHQT---YPHKILTGR--- 157 (723)
Q Consensus 94 l~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~~-~~----~p----~D~~i~s~GH~~---y~~~~l~G~--- 157 (723)
-++++++||.++++|+. .++||+|++||++|++++||+. ++ +| |||||+|+||++ |+++++.|+
T Consensus 4 ~~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12754 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 35679999999999997 5889999999999999999953 33 23 799999999999 999999997
Q ss_pred hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccch
Q 004923 158 RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQA 226 (723)
Q Consensus 158 ~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~~ 226 (723)
.++|++|||.|+ ++|||+...+++..+.+|++|++++.|+|||+|.|+++ .+++|||++|||+++||++
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 689999999998 79999987788999999999999999999999999986 3789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 227 YEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 227 ~EAln~A~~~~~n-li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
|||+++|+.+++| |++|+|||++ ++ +|++..+ . .+++.++
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~-~i-----dg~~~~~--~------------------------------~~~~~~r- 204 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGI-SI-----DGHVEGW--F------------------------------TDDTAMR- 204 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCC-cc-----Ccchhhc--c------------------------------CccHHHH-
Confidence 9999999999965 8999999983 44 3332211 0 1345555
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc--
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK-- 383 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~-- 383 (723)
|++|||+++.+|||||+++|.+|+++++.. .++|++|+++|+||+|++++|+. .+|||.++
T Consensus 205 ---------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~-~~~Hg~~l~~ 267 (663)
T PRK12754 205 ---------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGD 267 (663)
T ss_pred ---------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCC-ccccCCCCCH
Confidence 999999998548999999999999998753 57999999999999999988865 68898762
Q ss_pred ----------------ccCcc-----------ccc------------------------------ccC------------
Q 004923 384 ----------------FDPAT-----------GKQ------------------------------FKS------------ 394 (723)
Q Consensus 384 ----------------fd~~~-----------g~~------------------------------~~~------------ 394 (723)
|.... +++ ++.
T Consensus 268 ~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (663)
T PRK12754 268 AEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAK 347 (663)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhh
Confidence 11100 100 000
Q ss_pred ---cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC-----hhhhhhhCCCceeeccccHHHHHHHHHHHHh-cCC
Q 004923 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGL 465 (723)
Q Consensus 395 ---~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~-~G~ 465 (723)
+.+....|++++++|.++++.+|+++++++|+.+|+. ...|+++||+|||++||+||+|+++|+|||+ .|+
T Consensus 348 ~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~ 427 (663)
T PRK12754 348 LQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGF 427 (663)
T ss_pred hcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCC
Confidence 0012355688999999999999999999999998875 5789899999999999999999999999999 578
Q ss_pred eeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 466 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 466 ~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
+||++||++|++|+++||++. |++++||+++++|.|+ +|+||||||++||+++||.+|||+|++|+|+.|+..+++.+
T Consensus 428 ~Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a 506 (663)
T PRK12754 428 LPYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYG 506 (663)
T ss_pred eEEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHH
Confidence 999999999999999999864 9999999999999998 79999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCC---cEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 545 AAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+...++|+|||++|++.+...-.. .....+..|+ ++++++. |++||++|+++++|++|++.|+++||+++|||++
T Consensus 507 ~~~~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~ 584 (663)
T PRK12754 507 VERQDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP 584 (663)
T ss_pred HhCCCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcC
Confidence 986689999999998754321111 0012344454 8888864 9999999999999999999999999999999999
Q ss_pred ccccccHH---HHHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCC
Q 004923 622 FCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLT 697 (723)
Q Consensus 622 ~ikP~d~~---~i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~ 697 (723)
|++|||++ +.+.++... ...|++|.+...||... +..++. .+|+ +.|+.||++++++++||||
T Consensus 585 s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~----~~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t 651 (663)
T PRK12754 585 STDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKY----VGLNGA--------IVGM-TTFGESAPAELLFEEFGFT 651 (663)
T ss_pred ccCcCCCCCHHHHHhcCccccccceEeecccccchhhh----ccCCCC--------EEEe-CCCCCCCCHHHHHHHhCCC
Confidence 99999986 455555543 24699999888888743 333331 3676 8899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004923 698 PSHIAATVFNIL 709 (723)
Q Consensus 698 ~e~I~~~i~~ll 709 (723)
+++|++++++++
T Consensus 652 ~e~I~~~~~~~~ 663 (663)
T PRK12754 652 VDNVVAKAKALL 663 (663)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 15
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2.3e-92 Score=821.38 Aligned_cols=539 Identities=23% Similarity=0.336 Sum_probs=455.5
Q ss_pred HHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhh-ccC----CC----CcEEEeCCCchH---HHHHHHcCC---hh
Q 004923 96 QLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-VFN----AP----KDRILWDVGHQT---YPHKILTGR---RD 159 (723)
Q Consensus 96 ~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~-~~~----~p----~D~~i~s~GH~~---y~~~~l~G~---~~ 159 (723)
..|++||.++++|+. .++||+|++||++|++++||+ +++ +| |||||+|+||.+ |+.+++.|+ .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999997 588999999999999999995 443 33 799999999999 999999997 38
Q ss_pred HhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccchHH
Q 004923 160 KMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYE 228 (723)
Q Consensus 160 ~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~~~E 228 (723)
+|++||+.|+ ++|||+...+++..+++|++|++++.|+|||+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999997 79999987788999999999999999999999999874 378899999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHH
Q 004923 229 AMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307 (723)
Q Consensus 229 Aln~A~~~~~n-li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 307 (723)
|+++|+.+++| |++|+|||++ ++.+ ++..+. .+++.++
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~-~i~~-----~~~~~~--------------------------------~~~~~~~--- 200 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRI-SIDG-----AVDGSF--------------------------------TEDVAKR--- 200 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCe-eecc-----cccccc--------------------------------CccHHHH---
Confidence 99999999954 8999999984 4422 222110 0234444
Q ss_pred HhhcccCCCccchhhccCCeEEEec-CCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc---
Q 004923 308 YARGMISGSGSTLFEELGLYYIGPV-DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--- 383 (723)
Q Consensus 308 ~~~~~~~~~~~~lfea~G~~~~~~v-DGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~--- 383 (723)
|++|||+++ .| ||||+++|.+|++++++. .++|++|+++|+||+|++++|+. .+|||.++
T Consensus 201 -------------~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~-~~~H~~~~~~~ 264 (653)
T TIGR00232 201 -------------FEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGT-HGVHGAPLGDE 264 (653)
T ss_pred -------------HHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCC-CcccCCCCCHH
Confidence 999999998 56 999999999999999862 25899999999999999988865 57898752
Q ss_pred ---------------ccCcc-------------ccc--------------------------c----c-----------C
Q 004923 384 ---------------FDPAT-------------GKQ--------------------------F----K-----------S 394 (723)
Q Consensus 384 ---------------fd~~~-------------g~~--------------------------~----~-----------~ 394 (723)
|+..+ +++ + + .
T Consensus 265 ~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 344 (653)
T TIGR00232 265 DVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKA 344 (653)
T ss_pred HHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhc
Confidence 21100 100 0 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhh-----hhhhCCCceeeccccHHHHHHHHHHHHh-cCCeeE
Q 004923 395 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNL-----FLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPF 468 (723)
Q Consensus 395 ~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~-----f~~~~p~R~id~GIaE~~~v~~AaGlA~-~G~~p~ 468 (723)
..+....+++|+++|.++++.+|+++++++|+.+|+.++. |.++||+||||+||+||+|+++|+|+|+ .|++||
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~ 424 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPY 424 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEE
Confidence 0012356788999999999999999999999998887755 8899999999999999999999999999 679999
Q ss_pred EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh
Q 004923 469 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 547 (723)
Q Consensus 469 ~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~ 547 (723)
++||++|++|+++||+ +.|++++||++++++.|+ +|+||+|||+++|+++||++||++|++|+|++|+..++++|+..
T Consensus 425 ~~tf~~F~~r~~~~ir-~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 425 GGTFLMFVDYARPAIR-LAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALES 503 (653)
T ss_pred EEEhHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc
Confidence 9999999999999975 559999999999998887 79999999999999999999999999999999999999999966
Q ss_pred CCCCEEEEecCCCCccccCCCCCCCCCcccCceEEe--eeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCcccc
Q 004923 548 DDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 625 (723)
Q Consensus 548 ~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl--~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP 625 (723)
.++|+|||++|++.+.. .. .....+..|+ +++ ++|.||+||++|+++..|++|+++|+++||+++|||++|++|
T Consensus 504 ~~gP~~irl~r~~~~~~--~~-~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikp 579 (653)
T TIGR00232 504 QDGPTALILSRQNLPQL--EE-SSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDL 579 (653)
T ss_pred CCCcEEEEEcCCccCCC--Cc-ccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcc
Confidence 78999999999875432 11 1113455665 777 678999999999999999999999999999999999999999
Q ss_pred ccHHH---HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHH
Q 004923 626 LDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIA 702 (723)
Q Consensus 626 ~d~~~---i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~ 702 (723)
||++. +.++++++..+||+|+|+.+||. ..+ +...+++|+ |+|+.+|+++++++++|||+++|+
T Consensus 580 ld~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~ 646 (653)
T TIGR00232 580 FDKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVV 646 (653)
T ss_pred cccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHH
Confidence 97654 88888888899999999887773 111 111257888 999999999999999999999999
Q ss_pred HHHHHHH
Q 004923 703 ATVFNIL 709 (723)
Q Consensus 703 ~~i~~ll 709 (723)
++|++++
T Consensus 647 ~~i~~~~ 653 (653)
T TIGR00232 647 AKAKKLL 653 (653)
T ss_pred HHHHHhC
Confidence 9998753
No 16
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-88 Score=744.33 Aligned_cols=546 Identities=24% Similarity=0.368 Sum_probs=463.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhhc---c--CCC----CcEEEeCCCchH---HHHHHHcCC
Q 004923 91 IRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV---F--NAP----KDRILWDVGHQT---YPHKILTGR 157 (723)
Q Consensus 91 ~~~l~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~~---~--~~p----~D~~i~s~GH~~---y~~~~l~G~ 157 (723)
.+..+++++.||.+.+++|+ +++||+|.+||++++..+||.. + ++| |||||+|.||.+ |++++|+|+
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 34578899999999999998 5999999999999999999854 2 244 899999999999 999999998
Q ss_pred ---hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcccc
Q 004923 158 ---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTA 223 (723)
Q Consensus 158 ---~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~~~ 223 (723)
.|+|+.|||+++ .+|||....++++...+|.+||||+.|+|||+|.++++. |+++||++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 589999999998 589999777889999999999999999999999988754 569999999999999
Q ss_pred cchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHH
Q 004923 224 GQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA 302 (723)
Q Consensus 224 G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~ 302 (723)
|++|||..+|++++ .+||+|+|+|+ +|+ ||.+..+ + .+++.
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~-Isi-----DG~~~~~--f------------------------------~ed~~ 204 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSND-ISI-----DGDTSLS--F------------------------------TEDVA 204 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCC-cee-----ccCcccc--c------------------------------chhHH
Confidence 99999999999998 88999999998 676 5544311 1 15666
Q ss_pred HHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc
Q 004923 303 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (723)
Q Consensus 303 ~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~ 382 (723)
.+ ||++||+++..+||||+++|.+|+++|+.. +++|++|+|+|++|+|.+..|+. .++||.+
T Consensus 205 ~R----------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~kegt-~~~HGap 266 (663)
T COG0021 205 KR----------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEGT-HKVHGAP 266 (663)
T ss_pred HH----------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCCC-ccccCCC
Confidence 65 999999999899999999999999999974 67999999999999999887654 7899987
Q ss_pred c-------------ccCc-----------------cccccc--------------C------------------------
Q 004923 383 K-------------FDPA-----------------TGKQFK--------------S------------------------ 394 (723)
Q Consensus 383 ~-------------fd~~-----------------~g~~~~--------------~------------------------ 394 (723)
+ |+++ .+++.. +
T Consensus 267 Lg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~ 346 (663)
T COG0021 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPK 346 (663)
T ss_pred CCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhh
Confidence 4 1110 110000 0
Q ss_pred ---cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhh-hhCCCceeeccccHHHHHHHHHHHHhcC-
Q 004923 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEG- 464 (723)
Q Consensus 395 ---~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~-~~~p~R~id~GIaE~~~v~~AaGlA~~G- 464 (723)
+.+....|++..++|..+....|+++..+||+.+|+.+ ..|. +.+++|+|.+||+|++|.++++|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg 426 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG 426 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC
Confidence 00113457788899999999999999999999999865 3454 6788999999999999999999999996
Q ss_pred CeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 465 LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 465 ~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
++||..||..|..++..+| +.+|+|++|+++|++|.++ +|+||||||++|+++.+|.+||+.|++|+|++|+..+|+.
T Consensus 427 ~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~ 505 (663)
T COG0021 427 FIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKY 505 (663)
T ss_pred ceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHH
Confidence 6999999999999999886 5789999999999999988 8999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeee----CCcEEEEEecchHHHHHHHHHHHHhCCCceEEee
Q 004923 544 AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIE----GERVALLGYGTAVQSCLAASALLESNGLRLTVAD 619 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~e----G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 619 (723)
|+.+.++|+++.++|++++.++-. ........+|++++ +.|++||++||+|+.|++|++.|+++|++++||+
T Consensus 506 Al~~~~gPt~LiltRQnlp~l~~t----~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 506 ALERKDGPTALILTRQNLPVLERT----DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHhcCCCCeEEEEecCCCCccCCC----ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 999889999999999997654211 12222445689988 4799999999999999999999998899999999
Q ss_pred cCccccccHH---HHHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcC
Q 004923 620 ARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG 695 (723)
Q Consensus 620 ~~~ikP~d~~---~i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~g 695 (723)
++|+..|+.+ +.++++... ...|.||.+...||...+ ..+| ..+|+ ++|+.||+.++++++||
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~----g~~g--------~~ig~-~~FG~Sap~~~l~~~fG 648 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYV----GLDG--------AVIGM-DSFGASAPGDELFKEFG 648 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhc----CCCC--------cEEee-ccCcCCCCHHHHHHHhC
Confidence 9999998874 445566543 447999999999998543 2222 34565 89999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 004923 696 LTPSHIAATVFNILG 710 (723)
Q Consensus 696 l~~e~I~~~i~~ll~ 710 (723)
+|++.|++++++++.
T Consensus 649 ft~e~vv~~~~~~l~ 663 (663)
T COG0021 649 FTVENVVAKAKSLLN 663 (663)
T ss_pred CCHHHHHHHHHHhhC
Confidence 999999999998763
No 17
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.4e-85 Score=764.43 Aligned_cols=598 Identities=22% Similarity=0.253 Sum_probs=480.4
Q ss_pred ccccccccchHHhhhccCCCcccccccccccccCCCCCCCCcCCCCCccccccC-CHHHHHHHHHHHHHHHHHHhhh-c-
Q 004923 36 FSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNL-SIRELKQLADELRADVIFNVSK-T- 112 (723)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~-~~~~l~~la~~iR~~i~~~v~~-~- 112 (723)
-||+++++..|+++....-. ....||+++||.....-..= +.+-++++++.||++++.|+.+ +
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~--------------~~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~iR~~a~~mv~~A~~ 95 (889)
T TIGR03186 30 AQYLLAQLAAHAARLGLAPP--------------AAGATPYVNTIAVDQEPPYPGDLQLEERLAAILRWNALAMVVRANR 95 (889)
T ss_pred HHHHHHHHHHHHHHcCCCCC--------------CCCCCCCccCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 37788888887766433222 11224555555422221111 2233577899999999999974 5
Q ss_pred -----CCCCCCcccHHHHHHHHhh-ccCCC-----CcEEEeCCCchH---HHHHHHcCC--hhHhHHHHhc--C-CCCCC
Q 004923 113 -----GGHLGSSLGVIELTVALHY-VFNAP-----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT--D-GLSGF 173 (723)
Q Consensus 113 -----~GH~gsslg~~el~~aL~~-~~~~p-----~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~--~-gl~g~ 173 (723)
|||+|+++|++||+.+||. +|+.| +| +|+|+||.+ |+.+++.|+ .++|++|||. + ++++|
T Consensus 96 ~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~ 174 (889)
T TIGR03186 96 AYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSY 174 (889)
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCC
Confidence 6999999999999999985 45422 56 799999999 999999998 6899999997 4 58888
Q ss_pred CCCCC-CCcCccCCcccchhhHHHHHHHHHhhhcC-------CCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 004923 174 TKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (723)
Q Consensus 174 ~~~~e-~~~~~~g~G~~G~~ls~AlG~A~A~~~~g-------~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il 244 (723)
|++.. +.+..|.+|++|+|++.|+|||++.|+.. .+++|||++||||++||++|||+.+|++++ +||++|+
T Consensus 175 phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~Iv 254 (889)
T TIGR03186 175 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVI 254 (889)
T ss_pred CCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 87755 44688999999999999999999988543 369999999999999999999999999998 8999999
Q ss_pred ECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc
Q 004923 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL 324 (723)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~ 324 (723)
|+|++ ++ ||++..++.+ ++++.++ |++|
T Consensus 255 D~N~~-ql-----DG~t~~~~~~------------------------------~e~l~~k----------------f~a~ 282 (889)
T TIGR03186 255 NCNLQ-RL-----DGPVRGNGRI------------------------------IDELESQ----------------FAGA 282 (889)
T ss_pred eCCCC-cc-----CCcccccccc------------------------------chHHHHH----------------HHhC
Confidence 99995 33 6766644432 1445544 6777
Q ss_pred CCeEEEec--------------------------------------------------------------------CCCC
Q 004923 325 GLYYIGPV--------------------------------------------------------------------DGHN 336 (723)
Q Consensus 325 G~~~~~~v--------------------------------------------------------------------DGhd 336 (723)
||+++.++ +|||
T Consensus 283 GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD 362 (889)
T TIGR03186 283 GWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHD 362 (889)
T ss_pred CCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCC
Confidence 77766432 7999
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccccc---------------------------Ccc-
Q 004923 337 VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFD---------------------------PAT- 388 (723)
Q Consensus 337 ~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd---------------------------~~~- 388 (723)
++.|.+|+++|++. .++|++|.++|+||+|.+.++.+...+|+..+++ +..
T Consensus 363 ~~~i~~A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~ 441 (889)
T TIGR03186 363 ARKLYAAYDRAVRH-EGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDED 441 (889)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCC
Confidence 99999999988863 4699999999999999987666556788843211 100
Q ss_pred --------------c----------c-c--ccC-----------cchhhHHHHHHHHHHHHHHh---cCCCEEEEeccCC
Q 004923 389 --------------G----------K-Q--FKS-----------SARTQSYTTYFAEALIAEAE---VDKDVVAIHAAMG 427 (723)
Q Consensus 389 --------------g----------~-~--~~~-----------~~~~~~~~~~~~~aL~~~~~---~d~~iv~i~aD~~ 427 (723)
+ . + ++. ..+..+.+.+|.+.|..+++ ..++||.+.+|+.
T Consensus 442 s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a 521 (889)
T TIGR03186 442 SAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEA 521 (889)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCccc
Confidence 0 0 0 000 01234557899999777765 3468999999999
Q ss_pred CCcChh-------------------------hhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeehhHHH
Q 004923 428 GGTGLN-------------------------LFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSFM 476 (723)
Q Consensus 428 gs~~l~-------------------------~f~~~~p~R~id~GIaE~~~v~--~AaGlA~~----G~~p~~~t~s~Fl 476 (723)
.++|+. .|++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|++|.
T Consensus 522 ~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~ 601 (889)
T TIGR03186 522 RTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFG 601 (889)
T ss_pred ccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhH
Confidence 998553 3567789999999999999999 99999998 7899999999995
Q ss_pred -HHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh-----C
Q 004923 477 -QRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI-----D 548 (723)
Q Consensus 477 -~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~-----~ 548 (723)
+|++|||++. ++++.++++++.++|. .|.+|+|||..+|++++|.+||++|+.|+|+.|+..++..++++ .
T Consensus 602 ~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~ 680 (889)
T TIGR03186 602 FQRIGDLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQR 680 (889)
T ss_pred hhhHHHHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 8999999877 9999999999999998 58999999999999999999999999999999999999987652 3
Q ss_pred CCCEEEEecCCCCccccCCCCCCC-CCcccCc--e-EEee----eCCcEEEEEecchHHHHHHHHHHHHhC-CCceEEee
Q 004923 549 DRPSCFRYPRGNGIGVELPPGNKG-IPLEVGK--G-RILI----EGERVALLGYGTAVQSCLAASALLESN-GLRLTVAD 619 (723)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~-~~~~~gk--~-~vl~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId 619 (723)
++|+|||+.|.+.....++. +. ..++.|+ + ++++ +|.||+|+++|+++++|++|+++|+++ ||+++|||
T Consensus 681 ~gp~YlRl~r~~~~~p~~~~--~~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~s 758 (889)
T TIGR03186 681 DEFYYLTVTNENYAQPSLPE--DRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWS 758 (889)
T ss_pred CceEEEEeCCCCCCCCCcCC--CcccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEE
Confidence 68999999998653222222 11 2244444 7 8888 578999999999999999999999987 99999999
Q ss_pred cCccccccHHHHHHHhcCCCEEEEEcCC---C-CCChHH-------------HHHHHHHHcCCCCCCcceEEeecCCccc
Q 004923 620 ARFCKPLDHALIRSLAKSHEVLITVEEG---S-IGGFGS-------------HVVQFLAQDGLLDGTVKWRPLVLPDRYI 682 (723)
Q Consensus 620 ~~~ikP~d~~~i~~~~~~~~~vvvvEe~---~-~gG~g~-------------~v~~~l~~~g~~~~~~~~~~~~~~d~~~ 682 (723)
++|+||||++.+. +++++.++++|++ + .||+++ .|++++++.. +.+++++|+ |.|+
T Consensus 759 v~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG 831 (889)
T TIGR03186 759 VTSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFG 831 (889)
T ss_pred CCCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCC
Confidence 9999999999986 6788899999997 5 699999 9999998752 568999999 9999
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 683 DHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 683 ~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
.+|++++++++||+|+++|+.+++++|.+
T Consensus 832 ~Sgtr~~Lr~~fglda~~Iv~aal~~L~~ 860 (889)
T TIGR03186 832 RSDTRAALRAFFEVDRASIVIAALQALAD 860 (889)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998865
No 18
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=5.9e-84 Score=750.94 Aligned_cols=597 Identities=21% Similarity=0.239 Sum_probs=486.0
Q ss_pred cccccccchHHhhhccCCCcccccccccccccCCCCCCCCcCCCCCccccccCCHHHH-HHHHHHHHHHHHHHhh-hc--
Q 004923 37 SHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIREL-KQLADELRADVIFNVS-KT-- 112 (723)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~~~~~l-~~la~~iR~~i~~~v~-~~-- 112 (723)
+|+++++..|+++....- .+ ...||+++||....+-+-=...++ +++++.||++.+.||. ++
T Consensus 37 ~~~~~~l~~~~~~~~~~~-----------~~---~~~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~ 102 (891)
T PRK09405 37 HYLLEQLLERAREKGVSL-----------PA---SATTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKK 102 (891)
T ss_pred HHHHHHHHHHHHHcCCCC-----------CC---CCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 677777777665532211 11 234677777755444333333334 4568999999999996 33
Q ss_pred ----CCCCCCcccHHHHHHHHhh-ccCCC-----CcEEEeCCCchH---HHHHHHcCC--hhHhHHHHhc--C-CCCCCC
Q 004923 113 ----GGHLGSSLGVIELTVALHY-VFNAP-----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT--D-GLSGFT 174 (723)
Q Consensus 113 ----~GH~gsslg~~el~~aL~~-~~~~p-----~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~--~-gl~g~~ 174 (723)
|||+++++|+++|+.+||. .|+.| +| ||+|+||.+ |+.+++.|+ .++|.+|||. | +|++||
T Consensus 103 ~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syP 181 (891)
T PRK09405 103 DLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD-LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYP 181 (891)
T ss_pred CCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC-EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCC
Confidence 4999999999999999985 45532 57 899999999 999999998 6899999995 4 799999
Q ss_pred CCCC-CCcCccCCcccchhhHHHHHHHHHhhh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEE
Q 004923 175 KRSE-SEYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILN 245 (723)
Q Consensus 175 ~~~e-~~~~~~g~G~~G~~ls~AlG~A~A~~~-------~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~ 245 (723)
++.. +++..|.+|++|+|++.|+|+|++.|+ .+.+++|||++||||++||.+|||+..|++++ +||++|+|
T Consensus 182 hp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD 261 (891)
T PRK09405 182 HPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVIN 261 (891)
T ss_pred CcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9865 446789999999999999999999994 45689999999999999999999999999998 89999999
Q ss_pred CCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccC
Q 004923 246 DNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG 325 (723)
Q Consensus 246 dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G 325 (723)
+|+| ++ ||++..++.+ ++++.++ |+++|
T Consensus 262 ~N~q-~l-----DG~v~~~~~~------------------------------~~~l~~~----------------f~a~G 289 (891)
T PRK09405 262 CNLQ-RL-----DGPVRGNGKI------------------------------IQELEGI----------------FRGAG 289 (891)
T ss_pred CCCc-cc-----CCcccccccc------------------------------chhHHHH----------------HhhCC
Confidence 9995 44 7776654442 2455555 88888
Q ss_pred CeEEEec-------------------------C-------------------------------------------CCCH
Q 004923 326 LYYIGPV-------------------------D-------------------------------------------GHNV 337 (723)
Q Consensus 326 ~~~~~~v-------------------------D-------------------------------------------Ghd~ 337 (723)
|+++.++ | |||+
T Consensus 290 W~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~ 369 (891)
T PRK09405 290 WNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDP 369 (891)
T ss_pred CEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCH
Confidence 8888432 4 9999
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEEEeccCCCc-chhhhcccccCCccccc---------------------------Ccc-
Q 004923 338 DDLVAILEEVKNTKTTGPVLIHVVTEKGRGY-PYAEKAADKYHGVAKFD---------------------------PAT- 388 (723)
Q Consensus 338 ~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~-~~~e~~~~~~H~~~~fd---------------------------~~~- 388 (723)
++|.+|++++++. .++|++|.++|+||+|+ +.+|+ ...+|+..+.+ ++.
T Consensus 370 ~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e~-~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~ 447 (891)
T PRK09405 370 RKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGEG-KNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGED 447 (891)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccCC-CccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC
Confidence 9999999988863 47899999999999999 55554 45778742111 000
Q ss_pred --------------c----------cccc-C------------cchhhHHHHHHHHHHHHHHhc---CCCEEEEeccCCC
Q 004923 389 --------------G----------KQFK-S------------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGG 428 (723)
Q Consensus 389 --------------g----------~~~~-~------------~~~~~~~~~~~~~aL~~~~~~---d~~iv~i~aD~~g 428 (723)
+ ..++ + .....+.+.+|+++|.++++. .++||.+.+|+..
T Consensus 448 s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~ 527 (891)
T PRK09405 448 SPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEAR 527 (891)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEecccccc
Confidence 0 0000 0 012345688999999999985 8899999999999
Q ss_pred CcCh-------------------------hhhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeehhHH-H
Q 004923 429 GTGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-M 476 (723)
Q Consensus 429 s~~l-------------------------~~f~~~~p~R~id~GIaE~~~v~--~AaGlA~~----G~~p~~~t~s~F-l 476 (723)
++++ ..|++.||+|||++||+||+|++ +|+|+|++ |++||+.+|++| .
T Consensus 528 t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~ 607 (891)
T PRK09405 528 TFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGF 607 (891)
T ss_pred ccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhh
Confidence 8887 46788999999999999999999 99999998 789999999999 6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCC--
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDR-- 550 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~-- 550 (723)
+|++|||++.++++..+|+++++++|. ++.+|.|||..+|+.++|.+||++|+.|+|+.|+..+++.+++ ...+
T Consensus 608 ~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~ 687 (891)
T PRK09405 608 QRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENV 687 (891)
T ss_pred hhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCe
Confidence 899999999999999999999999998 6889999999999999999999999999999999999999876 1234
Q ss_pred CEEEEecCCCCccccCCCCCCCCCcccCce-EEeeeCC------cEEEEEecchHHHHHHHHHHHHh-CCCceEEeecCc
Q 004923 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIEGE------RVALLGYGTAVQSCLAASALLES-NGLRLTVADARF 622 (723)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~-~vl~eG~------dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~~~ 622 (723)
|.|+|+...+.. .|...++..+.++|+ +++++|. ||+|+++|.++++|++|+++|++ +||+++|||++|
T Consensus 688 ~yYlrl~ne~~~---~~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~S 764 (891)
T PRK09405 688 FYYITVMNENYH---QPAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTS 764 (891)
T ss_pred EEEEEeCCCCCC---CCCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCC
Confidence 666887522211 122123467889997 9999976 89999999999999999999998 799999999999
Q ss_pred cccccHHHHHHHh---------cCCCEEEEEcCCCCCChH-------HHHHHHHHHcCCCCCCcceEEeecCCccccCCC
Q 004923 623 CKPLDHALIRSLA---------KSHEVLITVEEGSIGGFG-------SHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGS 686 (723)
Q Consensus 623 ikP~d~~~i~~~~---------~~~~~vvvvEe~~~gG~g-------~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~ 686 (723)
+||||++.+.... ++++.|+++|++ .||.+ +.|++.+++.. +.+++++|+ |.|+.+|+
T Consensus 765 ikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt 838 (891)
T PRK09405 765 FNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDT 838 (891)
T ss_pred CCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCC
Confidence 9999999987655 566778888888 67777 88999887742 568999999 99999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 687 PADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 687 ~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
+++++++||||+++|+++++++|.+
T Consensus 839 ~~~L~~~fglda~~Iv~aal~~La~ 863 (891)
T PRK09405 839 REALRRFFEVDAEYVVVAALKALAD 863 (891)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999854
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=2.8e-82 Score=740.18 Aligned_cols=596 Identities=21% Similarity=0.231 Sum_probs=469.1
Q ss_pred ccccccccchHHhhhccCCCcccccccccccccCCCCCCCCcCCCCCccccccCCHHH-HHHHHHHHHHHHHHHhhh-cC
Q 004923 36 FSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRE-LKQLADELRADVIFNVSK-TG 113 (723)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~~~~~-l~~la~~iR~~i~~~v~~-~~ 113 (723)
-||+++++..|+++....-. ....||+++||....+-+-=...+ ++++++.||++++.||.+ +.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~--------------~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~ 109 (896)
T PRK13012 44 ARYLLDRLLERAAARGIALP--------------GLLTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANR 109 (896)
T ss_pred HHHHHHHHHHHHHHcCCCCC--------------CCCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36777777776555322211 123366666665333322212222 455899999999999963 54
Q ss_pred ------CCCCCcccHHHHHHHHhh-ccC-C----CCcEEEeCCCchH---HHHHHHcCC--hhHhHHHHhc---CCCCCC
Q 004923 114 ------GHLGSSLGVIELTVALHY-VFN-A----PKDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT---DGLSGF 173 (723)
Q Consensus 114 ------GH~gsslg~~el~~aL~~-~~~-~----p~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~---~gl~g~ 173 (723)
||+|+++|+++|+.+||. +|+ + .+| +|+|+||.+ |+.+++.|+ .++|.+|||. +|+++|
T Consensus 110 ~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~ 188 (896)
T PRK13012 110 AYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD-LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSY 188 (896)
T ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC-EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCC
Confidence 999999999999999985 444 1 379 599999999 999999998 6899999998 469999
Q ss_pred CCCCCC-CcCccCCcccchhhHHHHHHHHHhhh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 004923 174 TKRSES-EYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (723)
Q Consensus 174 ~~~~e~-~~~~~g~G~~G~~ls~AlG~A~A~~~-------~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il 244 (723)
|++... .+..|.+|++|+|++.|+|+|++.|+ ...+++|||++|||||+||.+|||+..|++++ +||++|+
T Consensus 189 P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~iv 268 (896)
T PRK13012 189 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVI 268 (896)
T ss_pred CCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEE
Confidence 998654 46889999999999999999999983 45679999999999999999999999999998 8999999
Q ss_pred ECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc
Q 004923 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL 324 (723)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~ 324 (723)
|+|+| ++ ||++..++.+ ++++..+ |+++
T Consensus 269 D~N~~-~l-----DG~v~~~~~~------------------------------~~~l~~~----------------f~a~ 296 (896)
T PRK13012 269 NCNLQ-RL-----DGPVRGNGRI------------------------------IQELEAL----------------FRGA 296 (896)
T ss_pred ECCCc-cc-----cCcccccccc------------------------------chHHHHH----------------HHhC
Confidence 99995 43 7776654432 2556655 8999
Q ss_pred CCeEEEec-------------------------C-------------------------------------------CCC
Q 004923 325 GLYYIGPV-------------------------D-------------------------------------------GHN 336 (723)
Q Consensus 325 G~~~~~~v-------------------------D-------------------------------------------Ghd 336 (723)
||+++.++ | |||
T Consensus 297 GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD 376 (896)
T PRK13012 297 GWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHD 376 (896)
T ss_pred CCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCC
Confidence 99988543 8 999
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc--------------------------ccC-ccc
Q 004923 337 VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--------------------------FDP-ATG 389 (723)
Q Consensus 337 ~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~--------------------------fd~-~~g 389 (723)
+++|.+|++++++. .++|++|.++|+||+|++.+.++...+|+..+ |.. +..
T Consensus 377 ~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~ 455 (896)
T PRK13012 377 PRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAED 455 (896)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccc
Confidence 99999999988753 46899999999999999844334467887321 110 000
Q ss_pred -----------cc--------------ccC-------------cchhhHHHHHHHHHHHHHHhc---CCCEEEEeccCCC
Q 004923 390 -----------KQ--------------FKS-------------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGG 428 (723)
Q Consensus 390 -----------~~--------------~~~-------------~~~~~~~~~~~~~aL~~~~~~---d~~iv~i~aD~~g 428 (723)
+. +.. ..+..+.+.+|+++|.++++. .++||.+++|+..
T Consensus 456 ~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~ 535 (896)
T PRK13012 456 SPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEAR 535 (896)
T ss_pred cHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEecccccc
Confidence 00 000 012345688999999999987 8999999999998
Q ss_pred CcCh-------------------------hhhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeehhHH-H
Q 004923 429 GTGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-M 476 (723)
Q Consensus 429 s~~l-------------------------~~f~~~~p~R~id~GIaE~~~v~--~AaGlA~~----G~~p~~~t~s~F-l 476 (723)
++++ ..|++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|++| .
T Consensus 536 t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~ 615 (896)
T PRK13012 536 TFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGF 615 (896)
T ss_pred ccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHH
Confidence 8765 23557899999999999999988 88888777 679999999999 6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh-----CCC
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI-----DDR 550 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~-----~~~ 550 (723)
+|++||++..++++..+|+++.+++|+ +|++|+|||+.+|++++|.+||++|+.|+|+.|+..+++.++++ .+.
T Consensus 616 ~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~ 695 (896)
T PRK13012 616 QRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDV 695 (896)
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999999987 79999999999999999999999999999999999999998853 257
Q ss_pred CEEEEecCCCCccccCCCCCCCCCcccCceEEee---eCCcEEEEEecchHHHHHHHHHHHHhC-CCceEEeecCccccc
Q 004923 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILI---EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPL 626 (723)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~---eG~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~ikP~ 626 (723)
|+|||++|++.+...+|+. ....+..|+ ++++ +|.|++|+++|+++++|++|+++|+++ ||+++|||++|++||
T Consensus 696 p~YIrL~r~~~~~p~~~~~-~~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpL 773 (896)
T PRK13012 696 FYYLTVMNENYAQPALPEG-AEEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTEL 773 (896)
T ss_pred eEEEEecCCCCCCCCCCcc-chhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHh
Confidence 9999999987542223331 113334444 6663 467999999999999999999999999 999999999999999
Q ss_pred cHHHH-------------------HHHhcC-CCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCC
Q 004923 627 DHALI-------------------RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGS 686 (723)
Q Consensus 627 d~~~i-------------------~~~~~~-~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~ 686 (723)
|++.+ .+.+.. ...+|+++++.. .|++.+.+. .+.+++++|+ |.|+.+|+
T Consensus 774 d~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~~----~~~~~~~LGv-D~FG~Sg~ 843 (896)
T PRK13012 774 RRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRAF----VPARYVTLGT-DGFGRSDT 843 (896)
T ss_pred HHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHHh----CCCCeEEEee-CCCCCCCC
Confidence 99976 223322 235555555432 455555542 1457889998 99999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 687 PADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 687 ~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
+++++++||+|+++|+++++++|..
T Consensus 844 ~~~L~~~fGlda~~Iv~aal~~La~ 868 (896)
T PRK13012 844 RAALRRFFEVDRHSIVLAALKALAD 868 (896)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999854
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.3e-73 Score=576.91 Aligned_cols=270 Identities=63% Similarity=1.005 Sum_probs=198.4
Q ss_pred cCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcC
Q 004923 77 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTG 156 (723)
Q Consensus 77 l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G 156 (723)
|++|++|.|||+|+.+||++||+|||.+|++.++++|||++|+||+|||++||||+||.|+|+||||+|||+|+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhc
Q 004923 157 RRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL 236 (723)
Q Consensus 157 ~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~ 236 (723)
|+++|.|+||.||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||+++.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCC
Q 004923 237 DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 316 (723)
Q Consensus 237 ~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~ 316 (723)
+.|++||+|||++ |+ .+++|+++++|+++++++.|+.+|+..|.+.+.+ ..+.+...|+++.++++ .+
T Consensus 161 ~~~liVILNDN~m-SI--------s~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEM-SI--------SPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP- 228 (270)
T ss_dssp T-SEEEEEEE-SB-SS--------SB--SSHCCC----------------------------------------------
T ss_pred CCCEEEEEeCCCc-cc--------CCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH-
Confidence 9999999999995 54 5789999999999999999999999999999887 66778888888999888 32
Q ss_pred ccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 317 GSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 317 ~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
.+||++||.|++|+||||+++|.++|+.+|+ .++|++|||.|
T Consensus 229 --~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 229 --NLFEELGFDYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred --HHHHHcCCeEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 8999999999999999999999999999998 58999999998
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-67 Score=531.12 Aligned_cols=304 Identities=33% Similarity=0.561 Sum_probs=289.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHH
Q 004923 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 477 (723)
Q Consensus 398 ~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ 477 (723)
..+++++|++.|.+++++++++|++++|+.+|+++..|.++||+||+|+||+||.|+|+|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEE
Q 004923 478 -RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (723)
Q Consensus 478 -ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 555 (723)
|+||||+++++++++||.++++++|+ .|+||+|||..||+++||.+||++|++|+|+.|++.++.++.. .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999865 79999999
Q ss_pred ecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh
Q 004923 556 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 635 (723)
Q Consensus 556 ~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~ 635 (723)
+.|...+.. ++. .++.|++||++++++|.|++||++|.|+..+++|++.|+++||+++|||+.+|||+|++.+.+.+
T Consensus 165 l~R~~~p~~-~~~--~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE--GGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC--CCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764432 222 25899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 636 KSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 636 ~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
++++.+||+|||+ .||+|+.|++.+++++ +++++++|+||+|+.+|...+++++||||+++|++++++++
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 9999999999998 6999999999999986 68999999999999999999999999999999999998864
No 22
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=3.5e-63 Score=569.54 Aligned_cols=596 Identities=20% Similarity=0.242 Sum_probs=447.3
Q ss_pred ccccccccchHHhhhccCCCcccccccccccccCCCCCCCCcCCCCCccccccCCHHH-HHHHHHHHHHHHHHHhh-hc-
Q 004923 36 FSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRE-LKQLADELRADVIFNVS-KT- 112 (723)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~~~~~-l~~la~~iR~~i~~~v~-~~- 112 (723)
-||+++++..|+++....-. ....||+++||....+-+.=...+ .+++++.||++++.|+. ++
T Consensus 30 a~~l~~~l~~~a~~~g~~~~--------------~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~ 95 (885)
T TIGR00759 30 ARYLLEQLLEYAREHGVPIP--------------AGTTTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANK 95 (885)
T ss_pred HHHHHHHHHHHHHHcCCCCC--------------CCCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36777888776665332211 123367777775443333222223 45566999999999997 46
Q ss_pred -----CCCCCCcccHHHHHHHHhh-ccCC-C----CcEEEeCCCchH---HHHHHHcCC--hhHhHHHHh---cCCCCCC
Q 004923 113 -----GGHLGSSLGVIELTVALHY-VFNA-P----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQ---TDGLSGF 173 (723)
Q Consensus 113 -----~GH~gsslg~~el~~aL~~-~~~~-p----~D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~---~~gl~g~ 173 (723)
+||+|+++|+++|+.+||+ +|+. | +| +|+|+||.+ |+.+++.|+ +++|++||| .+++++|
T Consensus 96 ~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD-~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~sh 174 (885)
T TIGR00759 96 KDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD-LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSY 174 (885)
T ss_pred CCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCC
Confidence 7999999999999999985 4542 2 79 599999999 999999997 689999999 4579999
Q ss_pred CCCCC-CCcCccCCcccchhhHHHHHHHHHhhh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 004923 174 TKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (723)
Q Consensus 174 ~~~~e-~~~~~~g~G~~G~~ls~AlG~A~A~~~-------~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il 244 (723)
|++.. +.+..|.+|++|+|++.|+|+|++.|+ ++.+++|||++||||++||++|||+.+|++++ +||++|+
T Consensus 175 Php~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IV 254 (885)
T TIGR00759 175 PHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVI 254 (885)
T ss_pred CCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 99865 345889999999999999999999996 56789999999999999999999999999998 8999999
Q ss_pred ECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc
Q 004923 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL 324 (723)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~ 324 (723)
|+|++ ++ ||++..++.+. +++.++ |+++
T Consensus 255 D~N~~-ql-----DG~v~~~~~i~------------------------------e~le~~----------------F~a~ 282 (885)
T TIGR00759 255 NCNLQ-RL-----DGPVRGNGKII------------------------------QELESL----------------FRGA 282 (885)
T ss_pred eCCCC-cc-----CCccccccccc------------------------------hhHHHH----------------HHhc
Confidence 99995 43 77766555431 334433 6666
Q ss_pred CCeEEEec--------------------------------------------------------------------CCCC
Q 004923 325 GLYYIGPV--------------------------------------------------------------------DGHN 336 (723)
Q Consensus 325 G~~~~~~v--------------------------------------------------------------------DGhd 336 (723)
||+++.++ +|||
T Consensus 283 GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD 362 (885)
T TIGR00759 283 GWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHD 362 (885)
T ss_pred CCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCC
Confidence 66665322 6999
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccc------------cC---------------ccc
Q 004923 337 VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKF------------DP---------------ATG 389 (723)
Q Consensus 337 ~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~f------------d~---------------~~g 389 (723)
+++|.+|++++++. .++|++|.++|+||+|.+...++...+|+..+. +. +.+
T Consensus 363 ~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~ 441 (885)
T TIGR00759 363 PRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEG 441 (885)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC
Confidence 99999999888763 468999999999999998443445688874321 10 000
Q ss_pred -------------------------ccc--c-----------CcchhhHHHHHHHHHHHHHHhcC---CCEEEEeccCCC
Q 004923 390 -------------------------KQF--K-----------SSARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGG 428 (723)
Q Consensus 390 -------------------------~~~--~-----------~~~~~~~~~~~~~~aL~~~~~~d---~~iv~i~aD~~g 428 (723)
..+ + +..++.+.+.+|.+.|..+++.. ++||-|.+|...
T Consensus 442 s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDear 521 (885)
T TIGR00759 442 SPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEAR 521 (885)
T ss_pred CHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccc
Confidence 000 0 00134566789999999888753 479999999999
Q ss_pred CcChhhhhhh-------------------------CCCceeeccccHHHHHH--HHHHHHhc--C--CeeEEeehhHH-H
Q 004923 429 GTGLNLFLRR-------------------------FPTRCFDVGIAEQHAVT--FAAGLACE--G--LKPFCAIYSSF-M 476 (723)
Q Consensus 429 s~~l~~f~~~-------------------------~p~R~id~GIaE~~~v~--~AaGlA~~--G--~~p~~~t~s~F-l 476 (723)
++|++++-.+ -.+|.++.||+|.++++ +|+|.|+. | +.||...|++| .
T Consensus 522 tfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgf 601 (885)
T TIGR00759 522 TFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGF 601 (885)
T ss_pred cCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccc
Confidence 9998765432 13789999999999998 67777775 6 68999999999 9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCC
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRP 551 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P 551 (723)
||..|.+ ..++.|+..-++++..+|. ....|-+||......+...+||++.|.|+.+.|+..++...+.+ ...-
T Consensus 602 qR~gD~~-waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~ 680 (885)
T TIGR00759 602 QRIGDLC-WAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQED 680 (885)
T ss_pred cchHHHH-HHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCC
Confidence 9999976 4788999999999988887 34568899988887788899999999999999999999999885 3446
Q ss_pred EEEEecCCCCccccCCCCCCCCCcccCc-eEEeeeC------CcEEEEEecchHHHHHHHHHHHHhC-CCceEEeecCcc
Q 004923 552 SCFRYPRGNGIGVELPPGNKGIPLEVGK-GRILIEG------ERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFC 623 (723)
Q Consensus 552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk-~~vl~eG------~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~i 623 (723)
+|++++-.+.. ..-|..+++..-.+-| .|.++++ .+|.|+++|+.+.++++|+++|+++ |+.++|+++++.
T Consensus 681 v~yylt~~ne~-~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~ 759 (885)
T TIGR00759 681 VFYYVTVMNEN-YVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSF 759 (885)
T ss_pred EEEEEEecCCC-CCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCH
Confidence 88888764321 1122211221112223 3666642 4799999999999999999999986 999999999999
Q ss_pred ccccHHHH-------------------HHHhcC-CCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCcccc
Q 004923 624 KPLDHALI-------------------RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID 683 (723)
Q Consensus 624 kP~d~~~i-------------------~~~~~~-~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~ 683 (723)
.-|..+.. .+.+.. ...+|++-+... -+...|..+ + +.++..+|. |.|+.
T Consensus 760 ~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~-~~~~qir~~------v--p~~~~~LGt-DgFGr 829 (885)
T TIGR00759 760 TELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYVR-AFAEQIRPY------V--PRKYVTLGT-DGFGR 829 (885)
T ss_pred HHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccchh-hhHHHHhhh------c--CCCceEecC-CCCCC
Confidence 88777643 111222 346777766531 122222222 2 457788886 99999
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 684 HGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 684 ~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
|++.++++++|++|+++|+.++++.|.+
T Consensus 830 Sdtr~~lr~~fevDa~~IV~AAL~aL~~ 857 (885)
T TIGR00759 830 SDTRENLRHFFEVDAKSVVLAALYALAD 857 (885)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999998854
No 23
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=2e-57 Score=488.30 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=268.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC----hhhhhhhCCC-ceeeccccHHHHHHHHHHHHhcCCeeEEee-h
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 472 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~p~-R~id~GIaE~~~v~~AaGlA~~G~~p~~~t-~ 472 (723)
.+++++|+++|.+++++||+++++++|++.+++ +++|+++||+ ||||+||+||+|+|+|+|||++|++||+++ |
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 578999999999999999999999999975444 5899999999 999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHHhhcC--------CCCEEEEeeCCCCC-CCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 473 SSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLV-GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~~--------~lpv~~v~~~~G~~-G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
+.|++|+||||+++++++ ++||+++ ++|.. +.+|+|||+..+ ++|+++|||+|++|+|+.|++.++++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 788899999999999987 4565555 55554 479999976666 99999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCc-cccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCc
Q 004923 544 AAAIDDRPSCFRYPRGNGI-GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~-~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 622 (723)
|++ .++|+|||+++.... ...+++ +.+.+++||+.++++|.|++||+||++++.|++|++.|+++||+++|||++|
T Consensus 161 a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 161 AIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 986 689999996654322 112332 3467889999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCcccc-CCCHHHHHHHcCCCHHH
Q 004923 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPADQLAQAGLTPSH 700 (723)
Q Consensus 623 ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~-~g~~~el~~~~gl~~e~ 700 (723)
+||||+++|.++++++++|||+||+. .||||++|++++.++++...+.++++++++|.|++ +|+.+++ +|+|+++
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~~ 314 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPAQ 314 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHHH
Confidence 99999999999999999999999998 79999999999999875333579999999999998 5666554 5999999
Q ss_pred HHHHHHHHHhcch
Q 004923 701 IAATVFNILGQTR 713 (723)
Q Consensus 701 I~~~i~~ll~~~~ 713 (723)
|+++|+++++.+|
T Consensus 315 I~~~i~~~l~~~~ 327 (327)
T CHL00144 315 IIEAVEQIITNKK 327 (327)
T ss_pred HHHHHHHHHhccC
Confidence 9999999886543
No 24
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.6e-56 Score=480.40 Aligned_cols=305 Identities=25% Similarity=0.356 Sum_probs=272.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEeehh
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS 473 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s 473 (723)
.+|+++|+++|.+++++||+++++++|++.+.+ ++.|+++| |+||||+||+||+|+|+|+|+|+.|+|||+++|+
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 489999999999999999999999999987666 38899999 9999999999999999999999999999999977
Q ss_pred -HHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 474 -SFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 474 -~Fl~ra~dqi~~~~a~~~--------lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
.|++|+||||++++++++ +|+++++.+ |..+.+|+|||+..+ +++|++|||+|++|+|+.|+..++++|
T Consensus 84 ~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 84 FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 788999999999999884 666666543 447889999977777 999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCccc-cCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCcc
Q 004923 545 AAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFC 623 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~i 623 (723)
++ .++|+||++++..+... +++. +.+.+++||+.++++|+|++||+||+++..|++|++.|+++||+++|||++++
T Consensus 162 ~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 162 IR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred Hh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 86 58999998876443211 1222 23678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC-CHHHH
Q 004923 624 KPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPSHI 701 (723)
Q Consensus 624 kP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl-~~e~I 701 (723)
+|||++.+.+++++++.|||+|+|. .||||++|++++.++++...+.++++++++|.|++.| ++++++|| ++++|
T Consensus 239 ~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~I 315 (327)
T PRK09212 239 RPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEEDI 315 (327)
T ss_pred CCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHHH
Confidence 9999999999999999999999998 7999999999999987654467899999999998865 78999998 99999
Q ss_pred HHHHHHHHhc
Q 004923 702 AATVFNILGQ 711 (723)
Q Consensus 702 ~~~i~~ll~~ 711 (723)
+++|++++++
T Consensus 316 ~~~i~~~~~~ 325 (327)
T PRK09212 316 IEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHhh
Confidence 9999998854
No 25
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=5.1e-56 Score=481.68 Aligned_cols=309 Identities=22% Similarity=0.318 Sum_probs=270.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee-
Q 004923 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 471 (723)
Q Consensus 398 ~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t- 471 (723)
..+|+++|+++|.+++++||+++++++|++.+.+ +.+|.++| |+||||+||+||+|+|+|+|+|++|+|||+++
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999999999999999999999976555 45677777 99999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 472 YSSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 472 ~s~Fl~ra~dqi~~~~a~~~--------lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
++.|++|+||||++++++++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.++++
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 57789999999999999888 99999998743355 699999887 599999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCccc-cCCC--CCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeec
Q 004923 544 AAAIDDRPSCFRYPRGNGIGV-ELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~~~-~~p~--~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~ 620 (723)
|++ .++|+|||+++...... +... ..+.+.+++|+++++++|+|++||++|++++.|++|++.|+++||+++|||+
T Consensus 184 a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~ 262 (356)
T PLN02683 184 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINL 262 (356)
T ss_pred HHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 985 67999999754332110 0111 0113567899999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC-CH
Q 004923 621 RFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TP 698 (723)
Q Consensus 621 ~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl-~~ 698 (723)
+|+||||+++|.+++++++.|||+|||. .||||++|++++.++++...+.++++++++|.+++ ....+|++++ ++
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p---~~~~le~~~~p~~ 339 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMP---YAANLERLALPQV 339 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCC---ccHHHHHhhCCCH
Confidence 9999999999999999999999999998 79999999999999875333569999999997654 5677899998 99
Q ss_pred HHHHHHHHHHHhcc
Q 004923 699 SHIAATVFNILGQT 712 (723)
Q Consensus 699 e~I~~~i~~ll~~~ 712 (723)
++|+++|++++.++
T Consensus 340 ~~i~~a~~~~~~~~ 353 (356)
T PLN02683 340 EDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999654
No 26
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=7.4e-55 Score=485.10 Aligned_cols=306 Identities=22% Similarity=0.289 Sum_probs=273.0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 004923 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (723)
Q Consensus 397 ~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t 471 (723)
...+++++|+++|.+++++|++++++++|++.+.+ ..+|.++| |+||||+||+||+|+|+|+|+|++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 44689999999999999999999999999986666 47899999 99999999999999999999999999999998
Q ss_pred h-hHHHHHHHHHHHHHhh--------cCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 472 Y-SSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 472 ~-s~Fl~ra~dqi~~~~a--------~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
+ +.|++|+||||+|+++ ++++||+|++..+|..+ .|+ ||+.+|+++++++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 4 6788999999999999 89999999987766544 677 99999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCCcc-ccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 543 TAAAIDDRPSCFRYPRGNGIG-VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 543 ~A~~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+|++ +++|+||++++..+.. ..+|.. +++.+++||++++++|+|++||++|+++..|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~~-~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPKL-DDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCCc-CCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9986 6899999544322111 123321 346778999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC-CHH
Q 004923 622 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPS 699 (723)
Q Consensus 622 ~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl-~~e 699 (723)
||||||+++|.++++++++|||+|||+ .||||++|++++.++++...+.++++++++|.|.+ +..++++++| +++
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~ 452 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVA 452 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHH
Confidence 999999999999999999999999998 79999999999999886434678999999999975 6889999998 999
Q ss_pred HHHHHHHHHH
Q 004923 700 HIAATVFNIL 709 (723)
Q Consensus 700 ~I~~~i~~ll 709 (723)
+|++++++++
T Consensus 453 ~Iv~av~~~~ 462 (464)
T PRK11892 453 EVVEAVKAVC 462 (464)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 27
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-54 Score=468.95 Aligned_cols=307 Identities=24% Similarity=0.364 Sum_probs=268.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEeccCC---CCcC-hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 004923 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTG-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (723)
Q Consensus 397 ~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~---gs~~-l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t 471 (723)
...+|+++|+++|.+++++||+++++++|++ +.++ +++|+++| |+||||+||+||+|+++|+|||++|++||+++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~ 112 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF 112 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe
Confidence 4568999999999999999999999999997 2232 68999999 99999999999999999999999999999998
Q ss_pred -hhHHHHHHHHHHHHHhhcC--------CCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 472 -YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 472 -~s~Fl~ra~dqi~~~~a~~--------~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
|++|++|++|||+++++++ ++|++++. .+|.+|.+|+||++..+ +++|++|||+|++|+|+.|++.+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 8999999999999999986 45666553 34447899999977777 9999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCCccccCCC-CCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 543 TAAAIDDRPSCFRYPRGNGIGVELPP-GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 543 ~A~~~~~~P~~ir~~r~~~~~~~~p~-~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
++++ .++|+||++|+..... ..+. ..+.+.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||++
T Consensus 191 ~a~~-~~~P~~i~~p~~l~r~-~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~ 268 (355)
T PTZ00182 191 AAIR-DPNPVVFFEPKLLYRE-SVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR 268 (355)
T ss_pred HHHh-CCCcEEEEeehHHhCC-CCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9987 6899999988753211 1111 11246778999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHH
Q 004923 622 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 700 (723)
Q Consensus 622 ~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~ 700 (723)
+++|||++.|.+.+++++.|||+||+. .||||++|++++.++++...+.++++++++|.|++++.. +.+.+.+++++
T Consensus 269 ~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~~ 346 (355)
T PTZ00182 269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKEK 346 (355)
T ss_pred eCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHHH
Confidence 999999999999999999999999998 699999999999998753335789999999999987543 56678899999
Q ss_pred HHHHHHHHH
Q 004923 701 IAATVFNIL 709 (723)
Q Consensus 701 I~~~i~~ll 709 (723)
|+++|++++
T Consensus 347 i~~~~~~~~ 355 (355)
T PTZ00182 347 VVEAAKRVL 355 (355)
T ss_pred HHHHHHHhC
Confidence 999998864
No 28
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=8.1e-52 Score=422.04 Aligned_cols=304 Identities=27% Similarity=0.415 Sum_probs=270.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCC---CCcCh-hhhhhhCC-CceeeccccHHHHHHHHHHHHhcCCeeEEee-h
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 472 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~---gs~~l-~~f~~~~p-~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t-~ 472 (723)
.+++++++++|.++|++|++|+++++|++ |.++. .+++++|+ +|++|+||+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 47899999999999999999999999986 33443 78999996 5999999999999999999999999999998 9
Q ss_pred hHHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 473 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~--------~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
.+|+..++|||+|++++ ..+|+++++..+|..+ .|.+|++..+ +++.++||++|++|++|.|++++++.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999985 4689999987655444 5788999888 899999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCc--cccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCc
Q 004923 545 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 622 (723)
++ +++||+|++++.... ..++|+ .+|.+|+||+.+.|||+|+|||+||.|++.+++|+++|+++||+++|||+||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 76 899999999986432 245774 5688999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcC-CCHHH
Q 004923 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG-LTPSH 700 (723)
Q Consensus 623 ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~g-l~~e~ 700 (723)
|+|||.++|.++++|++++|+|||.. .+|+|++|+..+.++++.+++.++.|++.+|.+.++ ...+|.+- .+++.
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~---~~~lE~~~lp~~~~ 313 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPY---SAALEKAYLPNPER 313 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCc---chhHHhhhCCCHHH
Confidence 99999999999999999999999886 799999999999999888788999999999988864 33355544 58999
Q ss_pred HHHHHHHHHh
Q 004923 701 IAATVFNILG 710 (723)
Q Consensus 701 I~~~i~~ll~ 710 (723)
|.+++++++.
T Consensus 314 I~~av~~v~~ 323 (324)
T COG0022 314 IVAAVKKVLE 323 (324)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 29
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=2.9e-48 Score=447.64 Aligned_cols=541 Identities=19% Similarity=0.217 Sum_probs=393.3
Q ss_pred CCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCC-Cc-EEEeCCCchH--
Q 004923 73 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAP-KD-RILWDVGHQT-- 148 (723)
Q Consensus 73 ~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p-~D-~~i~s~GH~~-- 148 (723)
.-|||.+...|+|+|.--+ ||+|++-|...++++|.++.+.. .| .+|++.||.+
T Consensus 31 ~n~ll~~pl~~~~~K~r~~----------------------GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~ 88 (785)
T PRK05261 31 DNPLLREPLKPEHVKPRLL----------------------GHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPA 88 (785)
T ss_pred cCcccCCCCCHHHCCcccC----------------------CCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHH
Confidence 3578999999999888433 99999999999999998876532 34 4688999999
Q ss_pred -HHHHHHcC-----Ch----hH--hH-HHHhcC---CCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeE
Q 004923 149 -YPHKILTG-----RR----DK--MH-TMRQTD---GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNV 212 (723)
Q Consensus 149 -y~~~~l~G-----~~----~~--l~-~~r~~~---gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~v 212 (723)
|+..+|.| +. ++ |. .|||++ |++|||.+ +.++....+|.+|++++.|+|+|+. +++.+|
T Consensus 89 ~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv 163 (785)
T PRK05261 89 MVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIV 163 (785)
T ss_pred HHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCCCCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEE
Confidence 89999999 21 23 76 588875 58999985 6788888999999999999999965 458899
Q ss_pred EEEEcCCcccccc---hHHHHHHhhhcC-CCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 004923 213 VAVIGDGAMTAGQ---AYEAMNNAGYLD-SDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (723)
Q Consensus 213 v~viGDGa~~~G~---~~EAln~A~~~~-~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~ 287 (723)
+|++|||++++|. .|++.++++..+ .+|+.|+++|++ ++.||... . +
T Consensus 164 ~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~--~------~-------------------- 215 (785)
T PRK05261 164 ACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPTILA--R------I-------------------- 215 (785)
T ss_pred EEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCcccc--c------c--------------------
Confidence 9999999999998 499989888765 999999999984 33333211 0 0
Q ss_pred hhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH--------HH-------Hhhhc-C
Q 004923 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI--------LE-------EVKNT-K 351 (723)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a--------l~-------~a~~~-~ 351 (723)
..+++.++ |++|||..+ .|||||++++..+ ++ +||.. .
T Consensus 216 ---------~~e~l~~r----------------f~g~Gw~~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~ 269 (785)
T PRK05261 216 ---------SDEELEAL----------------FRGYGYEPY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGD 269 (785)
T ss_pred ---------CcHhHHHH----------------HHHCCCeeE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11455555 999999988 7899999887776 44 33321 1
Q ss_pred CCCcE--EEEEEeccCCCcch------hhhcccccCCccc-------------------------ccCc-----------
Q 004923 352 TTGPV--LIHVVTEKGRGYPY------AEKAADKYHGVAK-------------------------FDPA----------- 387 (723)
Q Consensus 352 ~~~P~--~I~v~T~kg~G~~~------~e~~~~~~H~~~~-------------------------fd~~----------- 387 (723)
..+|+ +|+++|.||+|-|. .|+ ..+.|+++. |+..
T Consensus 270 ~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eG-s~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~ 348 (785)
T PRK05261 270 TTRPRWPMIVLRTPKGWTGPKEVDGKPIEG-SWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALA 348 (785)
T ss_pred CCCCCceEEEEECCccCCCCcccCCcccCC-CchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhc
Confidence 15899 99999999999652 343 357788873 2210
Q ss_pred -ccc-------------ccc----Cc-------------chhhHHHHHHHHHHHHHHhcCCC-EEEEeccCCCCcChhhh
Q 004923 388 -TGK-------------QFK----SS-------------ARTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLF 435 (723)
Q Consensus 388 -~g~-------------~~~----~~-------------~~~~~~~~~~~~aL~~~~~~d~~-iv~i~aD~~gs~~l~~f 435 (723)
+|. ..+ +. ......+. +++.|.++++.+|+ ++++++|...|+.+...
T Consensus 349 p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~ 427 (785)
T PRK05261 349 PKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAV 427 (785)
T ss_pred cCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhH
Confidence 000 000 00 00112333 88999999999998 99999999999887432
Q ss_pred hh-----------------hCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHH---HHHHHHHHHHhh---c---
Q 004923 436 LR-----------------RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQVVHDVD---L--- 489 (723)
Q Consensus 436 ~~-----------------~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl---~ra~dqi~~~~a---~--- 489 (723)
.+ ..-+|+|+ +|+|++|.|++.|+++.|.++++++|..|+ ..++.|+....- .
T Consensus 428 f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~w 506 (785)
T PRK05261 428 FEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPW 506 (785)
T ss_pred HhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 12389999 999999999999999999999999999998 788888732222 0
Q ss_pred -CCCC-EEEEeeCCCC-CCCCCCCCCc---hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCcc
Q 004923 490 -QKLP-VRFAMDRAGL-VGADGPTHCG---SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG 563 (723)
Q Consensus 490 -~~lp-v~~v~~~~G~-~G~dG~tH~~---~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~ 563 (723)
..++ +.++.++... +|+||+|||+ ++.++-++. |+++|+.|+|++|+..+++.|++..++|++|.++|++++.
T Consensus 507 r~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~ 585 (785)
T PRK05261 507 RKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQ 585 (785)
T ss_pred CCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence 1122 3355666665 7999999999 999988888 9999999999999999999999988999999999998654
Q ss_pred ccCCCCCCCCCcccCce-EEee--e-----CCcEEEEEecchHHH-HHHHHHHHHhC--CCceEEeecCcc---cc----
Q 004923 564 VELPPGNKGIPLEVGKG-RILI--E-----GERVALLGYGTAVQS-CLAASALLESN--GLRLTVADARFC---KP---- 625 (723)
Q Consensus 564 ~~~p~~~~~~~~~~gk~-~vl~--e-----G~dv~Iva~Gs~v~~-al~Aa~~L~~~--Gi~v~VId~~~i---kP---- 625 (723)
.. .. +.....+.+| +++. + +.||+|+|+|+++.. |++|+++|+++ ||+++||++.-+ .|
T Consensus 586 ~~-~~--~~a~~~~~kGayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~ 662 (785)
T PRK05261 586 WL-SM--DEARKHCTKGLGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEH 662 (785)
T ss_pred cC-Ch--HHHHHhccCceEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccC
Confidence 31 11 1000112233 4554 2 359999999999997 99999999999 999999999532 11
Q ss_pred ---ccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHH
Q 004923 626 ---LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIA 702 (723)
Q Consensus 626 ---~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~ 702 (723)
++.+.+.++....+.||+.=.++ ...|...+-.+ ....++...|.. +-+..-++-+++-..++|--+++
T Consensus 663 ~~~lsd~~f~~lFt~d~pvif~~hgy----p~~i~~l~~~r---~~~~~~~v~gy~-e~g~tttp~dm~~~N~~~r~~l~ 734 (785)
T PRK05261 663 PHGLSDREFDALFTTDKPVIFAFHGY----PWLIHRLTYRR---TNHHNFHVRGYK-EEGTTTTPFDMVVLNELDRFHLA 734 (785)
T ss_pred CCCCCHHHHHHhCCCCCcEEEEeCCC----HHHHHHHhccC---CCCCccEEEEEe-cCCCCCCHHHHHHHhCCCHHHHH
Confidence 34456666666666655543333 33344433322 112344444542 33445578899999999999998
Q ss_pred HHHHHHH
Q 004923 703 ATVFNIL 709 (723)
Q Consensus 703 ~~i~~ll 709 (723)
..+.+-+
T Consensus 735 ~~a~~~~ 741 (785)
T PRK05261 735 IDAIDRV 741 (785)
T ss_pred HHHHHhh
Confidence 8877653
No 30
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=4e-46 Score=409.19 Aligned_cols=609 Identities=21% Similarity=0.261 Sum_probs=439.8
Q ss_pred CCCCCcCCCCCccccccCCHHHHHHHH-HHHHHHHHHHhh---h----cCCCCCCcccHHHHHHHHhhccCCC------C
Q 004923 72 PPTPLLDTINYPIHMKNLSIRELKQLA-DELRADVIFNVS---K----TGGHLGSSLGVIELTVALHYVFNAP------K 137 (723)
Q Consensus 72 ~~~~~l~~i~~~~~~k~~~~~~l~~la-~~iR~~i~~~v~---~----~~GH~gsslg~~el~~aL~~~~~~p------~ 137 (723)
..||+.+||....+-.--...+|++.. ..+||.++.||- + .|||++|+.|++.|+.++|..|-.+ .
T Consensus 55 ~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~gg 134 (887)
T COG2609 55 TTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGG 134 (887)
T ss_pred CCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCC
Confidence 567777777666554444456677665 789999998883 2 4899999999999999998654333 5
Q ss_pred cEEEeCCCchH---HHHHHHcCC--hhHhHHHHhcC---CCCCCCCCCC-CCcCccCCcccchhhHHHHHHHHHhhhcC-
Q 004923 138 DRILWDVGHQT---YPHKILTGR--RDKMHTMRQTD---GLSGFTKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDLKG- 207 (723)
Q Consensus 138 D~~i~s~GH~~---y~~~~l~G~--~~~l~~~r~~~---gl~g~~~~~e-~~~~~~g~G~~G~~ls~AlG~A~A~~~~g- 207 (723)
|++.+ +||.+ |+..+|.|| .++|++|||.. |+++||++.. ++.+.|.++++|-|.-.|+=-|.-.|++.
T Consensus 135 DlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~ 213 (887)
T COG2609 135 DLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEA 213 (887)
T ss_pred ceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHh
Confidence 98776 89999 999999999 68999999975 4999999864 67888999999999988988887777653
Q ss_pred ------CCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhh
Q 004923 208 ------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPL 280 (723)
Q Consensus 208 ------~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~ 280 (723)
++.+||||+|||+|.|+...+|+..|+..+ .|++||||.|.| ++ ||++...|.+-+.|+.+
T Consensus 214 RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQ-rL-----DgpVrgngkiiqelE~~------ 281 (887)
T COG2609 214 RGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQ-RL-----DGPVRGNGKIIQELEGI------ 281 (887)
T ss_pred cCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchh-hc-----CCcccCCchhHHHHHHH------
Confidence 478999999999999999999999999988 999999999985 54 88887777776555543
Q ss_pred HHHHHHhhhhcccc-CCchHHHHH---------HHHH---------------Hhhc-ccCCCc--cchhhccC---CeEE
Q 004923 281 RELREVAKGVTKQI-GGPMHELAA---------KVDE---------------YARG-MISGSG--STLFEELG---LYYI 329 (723)
Q Consensus 281 ~~lr~~~~~~~~~~-g~~~~~~~~---------k~~~---------------~~~~-~~~~~~--~~lfea~G---~~~~ 329 (723)
+|..+|++.|.+ |....++.+ .|++ |+|. |+...+ .+|.+.+- ++..
T Consensus 282 --FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L 359 (887)
T COG2609 282 --FRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL 359 (887)
T ss_pred --hccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH
Confidence 577888888864 665544333 2222 2222 111111 11111110 0001
Q ss_pred EecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccC------------c----cccc--
Q 004923 330 GPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP------------A----TGKQ-- 391 (723)
Q Consensus 330 ~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~------------~----~g~~-- 391 (723)
.-.|||+..|.+|+++|... .++|++|.++|+||+|.+.+.+..+..|.+.+.++ . .++.
T Consensus 360 -~rGGHD~~ki~aA~~~A~~~-kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lp 437 (887)
T COG2609 360 -NRGGHDPEKVYAAFKKAQEH-KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELP 437 (887)
T ss_pred -hcCCCCHHHHHHHHHHHhcC-CCCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCC
Confidence 13589999999999999974 36999999999999999754444455676643221 0 0000
Q ss_pred -----------------------------------c--c----------CcchhhHHHHHHHHHHHHHHhcC---CCEEE
Q 004923 392 -----------------------------------F--K----------SSARTQSYTTYFAEALIAEAEVD---KDVVA 421 (723)
Q Consensus 392 -----------------------------------~--~----------~~~~~~~~~~~~~~aL~~~~~~d---~~iv~ 421 (723)
+ + ...+..+.+.+|...|.+++++. ++||-
T Consensus 438 y~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVp 517 (887)
T COG2609 438 YYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVP 517 (887)
T ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCcccc
Confidence 0 0 00123456788999999998844 47999
Q ss_pred EeccCCCCcChhhhhhh-------------------------CCCceeeccccHHHHHH--HHHHHHhc--C--CeeEEe
Q 004923 422 IHAAMGGGTGLNLFLRR-------------------------FPTRCFDVGIAEQHAVT--FAAGLACE--G--LKPFCA 470 (723)
Q Consensus 422 i~aD~~gs~~l~~f~~~-------------------------~p~R~id~GIaE~~~v~--~AaGlA~~--G--~~p~~~ 470 (723)
+.+|...++|+++|-.+ -.++.++.||+|.++++ +|+|.++. | +.||.-
T Consensus 518 iipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi 597 (887)
T COG2609 518 IIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI 597 (887)
T ss_pred ccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeee
Confidence 99999999988654321 13689999999999988 67777775 5 689998
Q ss_pred ehhHH-HHHHHHHHHHHhhcCCCCEEEEeeCCC-C-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh
Q 004923 471 IYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAG-L-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 547 (723)
Q Consensus 471 t~s~F-l~ra~dqi~~~~a~~~lpv~~v~~~~G-~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~ 547 (723)
.|++| +||..|- +..++.|...-.+++..+| . ....|..|+.....-+-..+||++.|.|+.+.|+.-++..++++
T Consensus 598 ~YsmFgfqRigD~-~waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~r 676 (887)
T COG2609 598 YYSMFGFQRIGDL-LWAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRR 676 (887)
T ss_pred eechhhhhhHHHH-HHHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHH
Confidence 99999 8999995 4678889888555554444 3 34458889877766666789999999999999999999999885
Q ss_pred CCC------CEEEEecCCCCccccCCCCCCCCCcccCce-EEeee-----CCcEEEEEecchHHHHHHHHHHHHh-CCCc
Q 004923 548 DDR------PSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIE-----GERVALLGYGTAVQSCLAASALLES-NGLR 614 (723)
Q Consensus 548 ~~~------P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~-~vl~e-----G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~ 614 (723)
--+ -.||++...+.+.-..|. +..-.+-|+ |.++. +..|.|+++|....++++|+++|++ .|+.
T Consensus 677 my~~~qe~v~yYlt~~ne~~~qPamp~---gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~ 753 (887)
T COG2609 677 MYGEGQENVFYYITLSNENYPQPAMPE---GAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVE 753 (887)
T ss_pred HhccCcCCcEEEEEeccCcCCCCCCCC---cchhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccc
Confidence 222 255665554433212222 222223333 44543 3589999999999999999999987 6999
Q ss_pred eEEeecCccccccHH-------------------HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEe
Q 004923 615 LTVADARFCKPLDHA-------------------LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPL 675 (723)
Q Consensus 615 v~VId~~~ikP~d~~-------------------~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~ 675 (723)
+.|.++++...|-.+ ++.+.++....+|++-+... . .++++.. +. +.+++.+
T Consensus 754 adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~~L~~~~p~Va~tDy~~-~----~a~qir~--~v--p~~y~vL 824 (887)
T COG2609 754 ADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQVLNADGPVVAVTDYMK-L----FAEQIRA--VV--PQRYRVL 824 (887)
T ss_pred cCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHHHHhccCCCeEEechhhH-h----HHHHHhc--cc--CCeeEEe
Confidence 999999987765543 34444553456666666542 1 2233321 22 4566777
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 676 VLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 676 ~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
|. |.|+.+++..+++++|.+|...|+.++++.+.+
T Consensus 825 Gt-dgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~ 859 (887)
T COG2609 825 GT-DGFGRSDSRENLRRFFEVDAYYVVVAALSALAK 859 (887)
T ss_pred cc-CCCCccCcHHHHHHHhccchHHHHHHHHHHHhc
Confidence 75 999999999999999999999999999988854
No 31
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-47 Score=370.42 Aligned_cols=222 Identities=33% Similarity=0.575 Sum_probs=198.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhhc-cC----CC----CcEEEeCCCchH---HHHHHHc
Q 004923 89 LSIRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWDVGHQT---YPHKILT 155 (723)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~~-~~----~p----~D~~i~s~GH~~---y~~~~l~ 155 (723)
++..+|+++|.+||+.+++|+. ...||+|+|||++||+++||+. ++ +| |||||+||||++ |+.++..
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 6788999999999999999996 5778999999999999999964 32 22 899999999999 8999999
Q ss_pred CC--hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHH
Q 004923 156 GR--RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNN 232 (723)
Q Consensus 156 G~--~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~ 232 (723)
|. +++|.+|++.++ |+|||.+..+|+....+|++|++||.|+|||++.|+++.+.+|++++|||+++||++|||++.
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 97 789999999998 999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhc
Q 004923 233 AGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 311 (723)
Q Consensus 233 A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~ 311 (723)
|++++ +|||.|+|.|+. ++ ||.+..+.. .+++.+|
T Consensus 165 Aah~~L~NLiaivD~N~~-Ql-----dG~t~~i~~-------------------------------~~pL~~k------- 200 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKL-QL-----DGETEEIMP-------------------------------KEPLADK------- 200 (243)
T ss_pred HHHhccCcEEEEEecCCc-cc-----CCchhhccC-------------------------------cchhHHH-------
Confidence 99998 899999999984 32 555543322 2677777
Q ss_pred ccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccC
Q 004923 312 MISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 312 ~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg 365 (723)
||+|||+++ .|||||+++|.+++++++.. .++|++|+++|+||
T Consensus 201 ---------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 201 ---------WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred ---------HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 999999988 89999999999999999874 34999999999987
No 32
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=3.8e-42 Score=405.66 Aligned_cols=488 Identities=18% Similarity=0.200 Sum_probs=342.9
Q ss_pred cCCCCCCcccHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--cCC--hhHhHHHHhc--------CC-CC--
Q 004923 112 TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--TGR--RDKMHTMRQT--------DG-LS-- 171 (723)
Q Consensus 112 ~~GH~gsslg~~el~~aL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~G~--~~~l~~~r~~--------~g-l~-- 171 (723)
.++-..+.-|+.-+.++|...++ .+.|. |++..|+...+.+. .|. ++.|.+|.-. +| ..
T Consensus 213 ~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~-vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyH 291 (924)
T PRK09404 213 VGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEI-VIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYH 291 (924)
T ss_pred ccCCcccccchhhHHHHHHHHHHHHHhCCCCCE-EEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccc
Confidence 44555578888888777765332 35665 55456999777665 365 4555665221 11 01
Q ss_pred -CCCCC----CCCCcC--ccCCcccchhhHHHHHHHHHhhhcCCC------CeEEEEEcCCcc-cccchHHHHHHhhhcC
Q 004923 172 -GFTKR----SESEYD--CFGTGHSSTSISAGLGMAVGRDLKGRK------NNVVAVIGDGAM-TAGQAYEAMNNAGYLD 237 (723)
Q Consensus 172 -g~~~~----~e~~~~--~~g~G~~G~~ls~AlG~A~A~~~~g~~------~~vv~viGDGa~-~~G~~~EAln~A~~~~ 237 (723)
|++.. ..+.|. .+..+|+|...|.|+|+|+|.++.+.+ ..+||++|||++ .+|.+||+||+|+.|+
T Consensus 292 lG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~ 371 (924)
T PRK09404 292 LGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRG 371 (924)
T ss_pred cCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcC
Confidence 22220 011111 112488999999999999999998877 789999999998 7999999999999999
Q ss_pred CC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccC
Q 004923 238 SD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS 314 (723)
Q Consensus 238 ~n---li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~ 314 (723)
+| +|+||.||++ ++.|...+... .....+
T Consensus 372 lp~ggvIfvveNNq~-g~tT~~~~~~s------------------------------------~~~~sd----------- 403 (924)
T PRK09404 372 YRTGGTIHIVINNQI-GFTTSPPDDRS------------------------------------TPYCTD----------- 403 (924)
T ss_pred CCCCCEEEEEEeCCE-EEeeCHHHhcc------------------------------------chhHHH-----------
Confidence 87 9999999984 44332211100 011222
Q ss_pred CCccchhhccCCeEEEecCCCCHHHHHHHHHHhhh--cCCCCcEEEEEEeccCCCcchhhhc----c---ccc--CCcc-
Q 004923 315 GSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYAEKA----A---DKY--HGVA- 382 (723)
Q Consensus 315 ~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~--~~~~~P~~I~v~T~kg~G~~~~e~~----~---~~~--H~~~- 382 (723)
++++||+..+ .|||+|++++..+.+.|.+ .+.++|++|++.|++-+|+...+.. + ..| |--+
T Consensus 404 -----~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi 477 (924)
T PRK09404 404 -----VAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTR 477 (924)
T ss_pred -----HHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHH
Confidence 2788999887 8999999999988876643 2368999999999999998643311 0 011 1110
Q ss_pred -c------------------------------cc------C--------------------ccccc-------------c
Q 004923 383 -K------------------------------FD------P--------------------ATGKQ-------------F 392 (723)
Q Consensus 383 -~------------------------------fd------~--------------------~~g~~-------------~ 392 (723)
. ++ + .||-+ +
T Consensus 478 ~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~ 557 (924)
T PRK09404 478 ELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTV 557 (924)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccccCCCCCHHHHHHHHHHhccC
Confidence 0 00 0 01000 0
Q ss_pred cC--------------------cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc--------------C----hhh
Q 004923 393 KS--------------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT--------------G----LNL 434 (723)
Q Consensus 393 ~~--------------------~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~--------------~----l~~ 434 (723)
+. .....+|..+...++..++++|++|+++++|++.+| + +.+
T Consensus 558 P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~ 637 (924)
T PRK09404 558 PEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNH 637 (924)
T ss_pred CCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccc
Confidence 00 001235888888899999999999999999997543 1 356
Q ss_pred hhhhC-CCceeeccccHHHHHHHHHHHHhcCCee--EEee-hhHHH---HHHHHHHHHHh-hcC--CCCEEEEeeCCCCC
Q 004923 435 FLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKP--FCAI-YSSFM---QRAYDQVVHDV-DLQ--KLPVRFAMDRAGLV 504 (723)
Q Consensus 435 f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p--~~~t-~s~Fl---~ra~dqi~~~~-a~~--~lpv~~v~~~~G~~ 504 (723)
+.++| +.|++|++|+|.+++|++.|+|+.|.+| +++. |.+|+ |.++||+++.+ +++ ..++++..++++ .
T Consensus 638 l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~-~ 716 (924)
T PRK09404 638 LSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGY-E 716 (924)
T ss_pred hhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCcC-C
Confidence 77777 8999999999999999999999999975 9987 99997 47799998885 443 467777777653 3
Q ss_pred CCCCCCCCc-hhhHhhhhcC--CCcEEEccCCHHHHHHHHHHHHHhC-CCCEEEEecCCCCcc-------ccCCCCCCCC
Q 004923 505 GADGPTHCG-SFDVTFMACL--PNMVVMAPSDEAELFHMVATAAAID-DRPSCFRYPRGNGIG-------VELPPGNKGI 573 (723)
Q Consensus 505 G~dG~tH~~-~~d~a~~~~i--P~l~V~~Psd~~E~~~~l~~A~~~~-~~P~~ir~~r~~~~~-------~~~p~~~~~~ 573 (723)
|. ||-|++ ..+ +++..+ |||+|+.|++|.+++++++.++.++ ++|++|+.||..+.. .+++. ..+
T Consensus 717 g~-g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~--~~f 792 (924)
T PRK09404 717 GQ-GPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAE--GSF 792 (924)
T ss_pred CC-ChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCC--CCc
Confidence 43 555544 444 677555 6999999999999999999976445 599999999865321 01111 112
Q ss_pred CcccCceEEeeeCCcE--EEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC----CEEEEEcCC
Q 004923 574 PLEVGKGRILIEGERV--ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEG 647 (723)
Q Consensus 574 ~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~----~~vvvvEe~ 647 (723)
...++++. .++++|| +|||||-+++.+++|++.+. ..++.|||+++|.|||.+.|.++++++ +.|++-|+.
T Consensus 793 ~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~ 869 (924)
T PRK09404 793 QPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEP 869 (924)
T ss_pred eeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCC
Confidence 22344444 5667799 79999999999999988543 349999999999999999999999886 455556666
Q ss_pred CCCChHHHHHHHHHH
Q 004923 648 SIGGFGSHVVQFLAQ 662 (723)
Q Consensus 648 ~~gG~g~~v~~~l~~ 662 (723)
...|.+.+|...+..
T Consensus 870 ~n~G~~~~~~~~~~~ 884 (924)
T PRK09404 870 KNQGAWYFIQHHLEE 884 (924)
T ss_pred CCCCcHHHHHHHHHH
Confidence 678888888777653
No 33
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-43 Score=352.75 Aligned_cols=306 Identities=24% Similarity=0.373 Sum_probs=262.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEeccCC---CCcCh-hhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 004923 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (723)
Q Consensus 397 ~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~---gs~~l-~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t 471 (723)
++.+.++++++++.+++++|+++++++++++ |+.++ .++.++| +.|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3568899999999999999999999999986 44454 6788888 67999999999999999999999999999997
Q ss_pred -hhHHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 472 -YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 472 -~s~Fl~ra~dqi~~~~a~--------~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
...|...++|||+|.+++ +++|++|.++. |....-|..|++.+. +|+.++||++|++|.++++.+++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 678999999999999874 57888888754 322235789999998 7899999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCCccc--cCCC--CCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEe
Q 004923 543 TAAAIDDRPSCFRYPRGNGIGV--ELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 618 (723)
Q Consensus 543 ~A~~~~~~P~~ir~~r~~~~~~--~~p~--~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 618 (723)
.|++ +++|+++.+..- ++.. ++|+ ..+++..++||+.+-|+|+|||||++.-++..|++|++.|.++|++++||
T Consensus 191 aAIR-d~NPVV~lEnel-LYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVI 268 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENEL-LYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVI 268 (359)
T ss_pred Hhcc-CCCCeEEEechh-hcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeE
Confidence 9975 899999987652 3332 2332 12346788999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcC-C
Q 004923 619 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG-L 696 (723)
Q Consensus 619 d~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~g-l 696 (723)
|+|+|+|||.++|..+++|+.++++||++. .+|+|++|++.+.|+.+-.++.++.|+...|.+-++.. .+|.+- .
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~---~lE~~a~p 345 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK---TLEDWAVP 345 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch---hhHhhcCC
Confidence 999999999999999999999999999998 69999999999999766445778889988898887643 355555 5
Q ss_pred CHHHHHHHHHHHH
Q 004923 697 TPSHIAATVFNIL 709 (723)
Q Consensus 697 ~~e~I~~~i~~ll 709 (723)
++++|+.++++++
T Consensus 346 ~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 346 QPADIVTAVKKLC 358 (359)
T ss_pred CHHHHHHHHHHhh
Confidence 8999999999875
No 34
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=1.3e-44 Score=387.57 Aligned_cols=233 Identities=32% Similarity=0.547 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhh-ccC----CC----CcEEEeCCCchH---HHHHHHcCC---h
Q 004923 95 KQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-VFN----AP----KDRILWDVGHQT---YPHKILTGR---R 158 (723)
Q Consensus 95 ~~la~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~-~~~----~p----~D~~i~s~GH~~---y~~~~l~G~---~ 158 (723)
+++|++||.++++|+. +++||+|++||++||+++||. +++ +| |||||+|+||.+ |+.+++.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 4678999999999997 588999999999999999986 333 33 899999999999 999999997 4
Q ss_pred hHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccchH
Q 004923 159 DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAY 227 (723)
Q Consensus 159 ~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~~~ 227 (723)
++|.+||+.|+ ++|||+....++..+.+|++|+|+++|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 78999999998 79999977789999999999999999999999998754 36789999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHH
Q 004923 228 EAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 306 (723)
Q Consensus 228 EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~ 306 (723)
||+.+|++++ .|||+|+|+|+. ++ ||.+..+ + .+++.+|
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~-q~-----dg~~~~~--~------------------------------~~~~~~k-- 201 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGI-QI-----DGPTDIV--F------------------------------SEDIAKK-- 201 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESE-ET-----TEEGGGT--H------------------------------HSHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEecCCc-cc-----CCCcccc--c------------------------------chHHHHH--
Confidence 9999999998 889999999993 43 4433211 0 1355555
Q ss_pred HHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc
Q 004923 307 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK 383 (723)
Q Consensus 307 ~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~ 383 (723)
|++|||+++.+.||||+++|.+|+++++.. .++|++|+++|+||+|++.+|+. .+|||.++
T Consensus 202 --------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~-~~~Hg~~l 262 (332)
T PF00456_consen 202 --------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGT-AKWHGSPL 262 (332)
T ss_dssp --------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTS-GGGTSS--
T ss_pred --------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhccc-chhhccCC
Confidence 999999998545999999999999999874 48999999999999999998865 68999764
No 35
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=9.4e-44 Score=356.27 Aligned_cols=195 Identities=72% Similarity=1.209 Sum_probs=177.1
Q ss_pred CCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchh
Q 004923 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTS 192 (723)
Q Consensus 113 ~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ 192 (723)
+||+|++||++||+++||++|+.||||||+|+||++|++++++|++++|.+||+.++++|||++.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999998988999999999999999999999999999999999999999998888999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHh
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALS 272 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~ 272 (723)
+|+|+|+|+|.++++++++|||++|||+++||++|||+++|+.+++|+++|++||++ ++.+ ++.
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~-~~~~-----~~~---------- 144 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM-SISP-----NVG---------- 144 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc-ccCC-----CCC----------
Confidence 999999999999999999999999999999999999999999999999999999984 3211 110
Q ss_pred hhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCC
Q 004923 273 RLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKT 352 (723)
Q Consensus 273 ~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~ 352 (723)
+.. .+|+++||.+..++||||++++.++++++++ .
T Consensus 145 ---------------------------~~~----------------~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~ 179 (195)
T cd02007 145 ---------------------------TPG----------------NLFEELGFRYIGPVDGHNIEALIKVLKEVKD--L 179 (195)
T ss_pred ---------------------------CHH----------------HHHHhcCCCccceECCCCHHHHHHHHHHHHh--C
Confidence 011 1278999998866899999999999999986 5
Q ss_pred CCcEEEEEEeccCCCc
Q 004923 353 TGPVLIHVVTEKGRGY 368 (723)
Q Consensus 353 ~~P~~I~v~T~kg~G~ 368 (723)
++|++|+++|.||+||
T Consensus 180 ~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 180 KGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCEEEEEEEecccCc
Confidence 7999999999999996
No 36
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=2.1e-42 Score=370.59 Aligned_cols=229 Identities=24% Similarity=0.316 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHhhh-cC------CCCCCcccHHHHHHHHhh-ccCC-----CCcEEEeCCCchH---HHHHHHcCC--
Q 004923 96 QLADELRADVIFNVSK-TG------GHLGSSLGVIELTVALHY-VFNA-----PKDRILWDVGHQT---YPHKILTGR-- 157 (723)
Q Consensus 96 ~la~~iR~~i~~~v~~-~~------GH~gsslg~~el~~aL~~-~~~~-----p~D~~i~s~GH~~---y~~~~l~G~-- 157 (723)
++.+.||+.+++|+.+ .+ ||+|++||++||+++||+ +++. ++|| |+|+||++ |++++++|+
T Consensus 6 ~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~~ 84 (386)
T cd02017 6 RIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRLT 84 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCCC
Confidence 4569999999999974 43 999999999999999984 5652 3899 88999999 999999998
Q ss_pred hhHhHHHHhcCC---CCCCCCCCCCCc-CccCCcccchhhHHHHHHHHHhhh-------cCCCCeEEEEEcCCcccccch
Q 004923 158 RDKMHTMRQTDG---LSGFTKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQA 226 (723)
Q Consensus 158 ~~~l~~~r~~~g---l~g~~~~~e~~~-~~~g~G~~G~~ls~AlG~A~A~~~-------~g~~~~vv~viGDGa~~~G~~ 226 (723)
.++|++|||.++ +++||++.+.+. ..+.+|++|++++.|+|||+|.|+ .+.+++|||++|||+++||++
T Consensus 85 ~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~v 164 (386)
T cd02017 85 EEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPES 164 (386)
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHH
Confidence 488999999998 899998876554 788999999999999999999998 567899999999999999999
Q ss_pred HHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 227 YEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 227 ~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
|||+++|++++ .|||+|+|+|++ ++ ||++..++.. .+++.+|
T Consensus 165 wEA~~~Ag~~kL~NLivIvD~N~~-qi-----dG~t~~v~~~------------------------------~e~l~~k- 207 (386)
T cd02017 165 LGAIGLAAREKLDNLIFVVNCNLQ-RL-----DGPVRGNGKI------------------------------IQELEGI- 207 (386)
T ss_pred HHHHHHHHHhCCCCEEEEEECCCC-cc-----CCcccccccC------------------------------chhHHHH-
Confidence 99999999998 899999999994 43 5555443211 2567777
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecC----------------------------------------------------
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVD---------------------------------------------------- 333 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vD---------------------------------------------------- 333 (723)
|++|||+++ .||
T Consensus 208 ---------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 208 ---------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred ---------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 999999988 677
Q ss_pred -----------------CCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcch-hhhcccccCC
Q 004923 334 -----------------GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPY-AEKAADKYHG 380 (723)
Q Consensus 334 -----------------Ghd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~-~e~~~~~~H~ 380 (723)
|||+++|.+||++++.. .++|++|+++|+||+|++. +|+. ..||+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~-~~~h~ 334 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGR-NHAHQ 334 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCC-cchhc
Confidence 99999999999998853 4789999999999999984 6654 57886
No 37
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.1e-39 Score=380.52 Aligned_cols=418 Identities=17% Similarity=0.165 Sum_probs=299.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCC------CCeEEEEEcCCcc-cccchHHHHHHhhhcCCCE---EEEEECCCCCCcCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGR------KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDM---IVILNDNKQVSLPT 254 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~------~~~vv~viGDGa~-~~G~~~EAln~A~~~~~nl---i~Il~dN~~~s~~t 254 (723)
..+|++...|.|+|+|.|.++++. +..++|++|||++ .+|.+||+||+|+.|+.|+ |+||.||++ .+.|
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqy-g~tT 391 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQI-GFTT 391 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCE-EEEE
Confidence 357899999999999999998765 5688999999997 7999999999999999997 999999984 4433
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCC
Q 004923 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (723)
Q Consensus 255 ~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDG 334 (723)
...+.... ....+ ++++||+..+ .|||
T Consensus 392 ~~~~~~s~------------------------------------~~~sd----------------~Ak~ygiP~~-~VDG 418 (929)
T TIGR00239 392 NPLDARST------------------------------------PYCSD----------------LAKMIQAPIF-HVNA 418 (929)
T ss_pred cHHHhcCc------------------------------------cCHHH----------------HheecCCCEE-EECC
Confidence 21111000 11222 2788999887 8999
Q ss_pred CCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhhhcc-------ccc--CCcc--c------------------
Q 004923 335 HNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA-------DKY--HGVA--K------------------ 383 (723)
Q Consensus 335 hd~~~l~~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~e~~~-------~~~--H~~~--~------------------ 383 (723)
+|++++..+.+.|.+. +.++|++|++.|++-.|+...+... +.+ |--+ .
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999888865432 3689999999999999986433210 000 1100 0
Q ss_pred ------------c---------cC-----------------ccc----------cc---ccCc-----------------
Q 004923 384 ------------F---------DP-----------------ATG----------KQ---FKSS----------------- 395 (723)
Q Consensus 384 ------------f---------d~-----------------~~g----------~~---~~~~----------------- 395 (723)
+ ++ .|+ ++ +++.
T Consensus 499 i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~ 578 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKA 578 (929)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHH
Confidence 0 00 010 00 0000
Q ss_pred ----chhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------------------ChhhhhhhC-CCceeeccccHHH
Q 004923 396 ----ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT------------------GLNLFLRRF-PTRCFDVGIAEQH 452 (723)
Q Consensus 396 ----~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~------------------~l~~f~~~~-p~R~id~GIaE~~ 452 (723)
....+|.++...++..++++|++|+++++|++.++ -+.++.++| +.|++|++|+|.+
T Consensus 579 ~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a 658 (929)
T TIGR00239 579 MAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEES 658 (929)
T ss_pred HhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHH
Confidence 01136889999999999999999999999997542 135677777 7999999999999
Q ss_pred HHHHHHHHHhcCCeeE--Eee-hhHHH---HHHHHHHHHH-hhcC--CCCEEEEeeCCCCCCCCCCCCCchhhHhhh--h
Q 004923 453 AVTFAAGLACEGLKPF--CAI-YSSFM---QRAYDQVVHD-VDLQ--KLPVRFAMDRAGLVGADGPTHCGSFDVTFM--A 521 (723)
Q Consensus 453 ~v~~AaGlA~~G~~p~--~~t-~s~Fl---~ra~dqi~~~-~a~~--~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~--~ 521 (723)
++|++.|+|+.|.+|+ ++. |.+|+ |.++||+++. .+++ ..++++..++++ .|..+..|++..+ .++ .
T Consensus 659 ~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~lql~ 736 (929)
T TIGR00239 659 VLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQGPEHSSGRLE-RFLQLA 736 (929)
T ss_pred HHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCCCchhhccCHH-HHHHHh
Confidence 9999999999998875 776 99998 4779999888 3543 467777777653 3443344444444 566 7
Q ss_pred cCCCcEEEccCCHHHHHHHHH-HHHHhCCCCEEEEecCCCCcc-c------cCCCCCCCCCcccCceE-----EeeeCCc
Q 004923 522 CLPNMVVMAPSDEAELFHMVA-TAAAIDDRPSCFRYPRGNGIG-V------ELPPGNKGIPLEVGKGR-----ILIEGER 588 (723)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~l~-~A~~~~~~P~~ir~~r~~~~~-~------~~p~~~~~~~~~~gk~~-----vl~eG~d 588 (723)
+.|||+|+.|++|.+++++++ .|++..++|++|+.||..+.. . ++|+. .+..+++... +.+++-+
T Consensus 737 ~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~v~ 814 (929)
T TIGR00239 737 AEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEGVK 814 (929)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccCCc
Confidence 889999999999999999999 576544899999999865421 1 33431 2333443211 1223344
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCC----EEEEEcCCCCCChHHHHHHHHHH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE----VLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~----~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
.+|+++| +++.++.+ +.++.+|+++.|||+++|.|||.++|.++++++. .|++-|+....|-...|...+..
T Consensus 815 ~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 815 RLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred EEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 5555555 78878877 6677789999999999999999999999998873 66666666655555566666653
No 38
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=2.3e-39 Score=338.51 Aligned_cols=228 Identities=32% Similarity=0.526 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhh-hcCCCCCCcccHHHHHHHHhhcc-C----C----CCcEEEeCCCchH---HHHHHHcCC--hhHhHH
Q 004923 99 DELRADVIFNVS-KTGGHLGSSLGVIELTVALHYVF-N----A----PKDRILWDVGHQT---YPHKILTGR--RDKMHT 163 (723)
Q Consensus 99 ~~iR~~i~~~v~-~~~GH~gsslg~~el~~aL~~~~-~----~----p~D~~i~s~GH~~---y~~~~l~G~--~~~l~~ 163 (723)
++||+++++|+. +++||+++++|++|++++||+.+ + + ++||||+|+||++ |++++++|+ .++|.+
T Consensus 1 ~~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred ChHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 369999999997 58899999999999999999643 2 1 3799999999999 778999998 488999
Q ss_pred HHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCC-CEE
Q 004923 164 MRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMI 241 (723)
Q Consensus 164 ~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~-nli 241 (723)
||+.|+ ++|||++..+++..+++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||++++|+.+++ |++
T Consensus 81 ~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 81 FRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred hcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 999986 899999888888889999999999999999999999999999999999999999999999999999995 699
Q ss_pred EEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchh
Q 004923 242 VILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLF 321 (723)
Q Consensus 242 ~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lf 321 (723)
+|+|||++ ++. +..... + ...++. .+|
T Consensus 161 ~vvdnN~~-~~~-----~~~~~~--~-----------------------------~~~~~~----------------~~~ 187 (255)
T cd02012 161 AIVDSNRI-QID-----GPTDDI--L-----------------------------FTEDLA----------------KKF 187 (255)
T ss_pred EEEECCCc-ccc-----CcHhhc--c-----------------------------CchhHH----------------HHH
Confidence 99999984 321 111000 0 002333 349
Q ss_pred hccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc
Q 004923 322 EELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (723)
Q Consensus 322 ea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~ 382 (723)
++|||.++ .|||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+||+.+
T Consensus 188 ~a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 188 EAFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HHcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 99999988 79999999999999998863 2799999999999999999885 56889875
No 39
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-38 Score=308.85 Aligned_cols=305 Identities=20% Similarity=0.285 Sum_probs=257.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCC--cC-hhhhhhhCC-CceeeccccHHHHHHHHHHHHhcCCeeEEee-
Q 004923 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG--TG-LNLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 471 (723)
Q Consensus 397 ~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs--~~-l~~f~~~~p-~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t- 471 (723)
+.++..++++++|.-.++.||+-+++++|++-+ +. ..+++++|. +|+||++++||+++|+..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 456778899999999999999999999998722 21 257888884 8999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcC--------CCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 472 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 472 ~s~Fl~ra~dqi~~~~a~~--------~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
|++|+..+||||+|.+++. ++--.-+-..+|.+|..+-.|++..+ +++.+.||++|+.|..|.|+++++..
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCch-hheecCCCceEEecCCcchhhceeee
Confidence 9999999999999999863 23222222456778999999999988 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCc--cccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHh-CCCceEEeec
Q 004923 544 AAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES-NGLRLTVADA 620 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId~ 620 (723)
+++ +.+|++|++|+-... ..++|. .+|.++++.+.++|||+|+|||+||+.++.++|++.+.++ .|++++|||+
T Consensus 198 cir-dpnp~iffepk~lyr~a~edvp~--~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidl 274 (362)
T KOG0525|consen 198 CIR-DPNPCIFFEPKILYRQAVEDVPE--GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDL 274 (362)
T ss_pred ecc-CCCceEEechHHHHHHhhhhCCC--CCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEee
Confidence 975 899999999985421 234664 4688999999999999999999999999999999987654 5999999999
Q ss_pred CccccccHHHHHHHhcCCC-EEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcC-CCH
Q 004923 621 RFCKPLDHALIRSLAKSHE-VLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG-LTP 698 (723)
Q Consensus 621 ~~ikP~d~~~i~~~~~~~~-~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~g-l~~ 698 (723)
++|-|||++.+.+++++++ .+|+.|...+||||++|++.+.+++++....++.|++.-|++-++ +.|-|- .+.
T Consensus 275 kti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~ptk 349 (362)
T KOG0525|consen 275 KTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMPTK 349 (362)
T ss_pred ecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccCcH
Confidence 9999999999999887775 555666667999999999999999999888899888777776654 344344 478
Q ss_pred HHHHHHHHHHHh
Q 004923 699 SHIAATVFNILG 710 (723)
Q Consensus 699 e~I~~~i~~ll~ 710 (723)
..|.++|++.++
T Consensus 350 ~ki~daik~~vn 361 (362)
T KOG0525|consen 350 NKILDAIKKTVN 361 (362)
T ss_pred hHHHHHHHHhcc
Confidence 999999987653
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=4e-34 Score=277.15 Aligned_cols=154 Identities=50% Similarity=0.823 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHH
Q 004923 404 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQV 483 (723)
Q Consensus 404 ~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi 483 (723)
+++++|.+++++||+++++++|++.++++..|+++||+|++|+||+|++|+++|+|+|+.|++||+++|+.|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 67899999999999999999999988889999999999999999999999999999999999999999988999999999
Q ss_pred HHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecC
Q 004923 484 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558 (723)
Q Consensus 484 ~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r 558 (723)
+++++++++||+++++++|+ .|.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ +++|+|||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999887 5699999999999999999999999999999999999999997 56799999986
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.97 E-value=1.9e-31 Score=260.25 Aligned_cols=152 Identities=29% Similarity=0.412 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCC----cChhhhhhhCCC-ceeeccccHHHHHHHHHHHHhcCCeeEEe-ehhHHHH
Q 004923 404 YFAEALIAEAEVDKDVVAIHAAMGGG----TGLNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQ 477 (723)
Q Consensus 404 ~~~~aL~~~~~~d~~iv~i~aD~~gs----~~l~~f~~~~p~-R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t~s~Fl~ 477 (723)
+++++|.+++++||+++++++|++.+ ..++.|+++||+ ||||+||+|++++|+|+|+|+.|++||++ +|++|++
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHH
Confidence 68899999999999999999998642 246899999999 99999999999999999999999999998 6999999
Q ss_pred HHHHHHHHHhhcC--------CCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCC
Q 004923 478 RAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 549 (723)
Q Consensus 478 ra~dqi~~~~a~~--------~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~ 549 (723)
|++||++++++++ ++||++++.++| .+.+|+||+ .+|+++||++|||+|++|+|+.|+..+++++++ .+
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~~ 158 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-DD 158 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-CC
Confidence 9999999999976 499999997766 578899976 567899999999999999999999999999986 67
Q ss_pred CCEEEEecC
Q 004923 550 RPSCFRYPR 558 (723)
Q Consensus 550 ~P~~ir~~r 558 (723)
+|++|++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999886
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=2.6e-31 Score=263.09 Aligned_cols=163 Identities=41% Similarity=0.555 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhC---CCceeeccccHHHHHHHHHHHHhcC--CeeEEeeh
Q 004923 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF---PTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIY 472 (723)
Q Consensus 398 ~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~---p~R~id~GIaE~~~v~~AaGlA~~G--~~p~~~t~ 472 (723)
+.+|+++++++|.+++++||+++++++|+++++....+.+.+ |+|++|+||+|++|+++|+|+|++| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 358999999999999999999999999999888776666555 4599999999999999999999999 77778889
Q ss_pred hHHHH----HHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh
Q 004923 473 SSFMQ----RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 547 (723)
Q Consensus 473 s~Fl~----ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~ 547 (723)
++|+. |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++|||+|++|+|++|+++++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 7778887 78999999999999999999999999999999999999999985
Q ss_pred -CCCCEEEEecCCCC
Q 004923 548 -DDRPSCFRYPRGNG 561 (723)
Q Consensus 548 -~~~P~~ir~~r~~~ 561 (723)
+++|+|||++|+.+
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 68999999999763
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.95 E-value=1.1e-27 Score=235.02 Aligned_cols=158 Identities=42% Similarity=0.604 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHhcCC-CEEEEeccCCCCcChhhhhhhCCCc-------eeeccccHHHHHHHHHHHHhcCCeeEEeeh
Q 004923 401 YTTYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLRRFPTR-------CFDVGIAEQHAVTFAAGLACEGLKPFCAIY 472 (723)
Q Consensus 401 ~~~~~~~aL~~~~~~d~-~iv~i~aD~~gs~~l~~f~~~~p~R-------~id~GIaE~~~v~~AaGlA~~G~~p~~~t~ 472 (723)
+++++.++|.+++++|+ +++++++|++.++++.. .+.||+| ++|+||+|++|+++|+|+|++|++||+++|
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~ 80 (168)
T smart00861 2 TRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAIF 80 (168)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEee
Confidence 67899999999999855 89999999988877653 5666665 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCE
Q 004923 473 SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 552 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~ 552 (723)
+.|+.|+++|+++++++++.|+++..+.++..|.+|+|||+.+|+++++++||++|++|+|++|++.++++++...++|+
T Consensus 81 ~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p~ 160 (168)
T smart00861 81 FTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPP 160 (168)
T ss_pred HHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCCE
Confidence 99999999999988777645555443333337889999999999999999999999999999999999999997557899
Q ss_pred EEEecCC
Q 004923 553 CFRYPRG 559 (723)
Q Consensus 553 ~ir~~r~ 559 (723)
+||++++
T Consensus 161 ~i~~~~~ 167 (168)
T smart00861 161 VIRLERK 167 (168)
T ss_pred EEEecCC
Confidence 9999875
No 44
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.6e-24 Score=238.12 Aligned_cols=486 Identities=21% Similarity=0.268 Sum_probs=309.5
Q ss_pred CCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCC-CCcE-EEeCCCchHH--
Q 004923 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNA-PKDR-ILWDVGHQTY-- 149 (723)
Q Consensus 74 ~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~-p~D~-~i~s~GH~~y-- 149 (723)
-|+|.+...++|+|.--+ ||+|++.|..-+++.+..+.+. ..+. +|...||..-
T Consensus 43 npl~~~pl~~e~lK~r~l----------------------GHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~ 100 (793)
T COG3957 43 NPLLREPLQAEHLKARLL----------------------GHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAI 100 (793)
T ss_pred CCcccccCChhhccchhc----------------------ccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCccee
Confidence 356777777778776333 9999999999999888765432 2333 4556799872
Q ss_pred -HHHHHcCC---------------hhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEE
Q 004923 150 -PHKILTGR---------------RDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVV 213 (723)
Q Consensus 150 -~~~~l~G~---------------~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv 213 (723)
+..+|.|. ...+++|+..||+.+|..+ |.++..--.|-+|++++.|.|.|+ ..++-.+.
T Consensus 101 ~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~SH~~p-etPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~ 175 (793)
T COG3957 101 VANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGSHVAP-ETPGSIHEGGELGYALSHAYGAAF----DNPDLIVA 175 (793)
T ss_pred eeccccCCccccccccccccHHHHHHHHHhccCCCCcccccCC-CCCCccCcCcchhHHHHHHHHhhc----CCCCcEEE
Confidence 23345552 2345666667899999887 566665567999999999988876 45699999
Q ss_pred EEEcCCcccccchHHHHHHhhhc----CCCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhh
Q 004923 214 AVIGDGAMTAGQAYEAMNNAGYL----DSDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 288 (723)
Q Consensus 214 ~viGDGa~~~G~~~EAln~A~~~----~~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~ 288 (723)
|++|||+-.+|.-.-+...-.++ ..+++-|+.-||+ ++-||. ++.++
T Consensus 176 ~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNGykI~npT~--------lar~s-------------------- 227 (793)
T COG3957 176 CVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNGYKIENPTV--------LARIS-------------------- 227 (793)
T ss_pred EEecccccccCccccccccccccCccccCceeeEEEecceeccCcee--------eeecC--------------------
Confidence 99999977776542222111222 3789999999995 333331 11110
Q ss_pred hhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHH--------HHHHHH-------hhhc-CC
Q 004923 289 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL--------VAILEE-------VKNT-KT 352 (723)
Q Consensus 289 ~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l--------~~al~~-------a~~~-~~ 352 (723)
-+++. ++|+.+||..+ .|+|+|+++. ..+++. ++.. ..
T Consensus 228 ---------~~el~----------------~~f~G~Gy~p~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~ 281 (793)
T COG3957 228 ---------DEELK----------------ALFEGYGYEPV-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEA 281 (793)
T ss_pred ---------hHHHH----------------HHHhhCCCcee-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 01222 34999999877 6899898762 222221 2221 12
Q ss_pred CCc--EEEEEEeccCCCcchhhh-----cccccCCccc-------------------------ccCc------------c
Q 004923 353 TGP--VLIHVVTEKGRGYPYAEK-----AADKYHGVAK-------------------------FDPA------------T 388 (723)
Q Consensus 353 ~~P--~~I~v~T~kg~G~~~~e~-----~~~~~H~~~~-------------------------fd~~------------~ 388 (723)
.+| -+|.++|.||++-+..-. ..-+.|.++. ||.. +
T Consensus 282 ~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~ 361 (793)
T COG3957 282 IRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPK 361 (793)
T ss_pred cCccccceeeecCCCCcCceeecceeccccchhccCCCCCCCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccc
Confidence 334 368899999987542111 1122465542 2210 0
Q ss_pred c-ccc-----------cCc-----------------chhhHHHHHHHHHHHHHHhcCCC-EEEEeccCCCCcChhhhhh-
Q 004923 389 G-KQF-----------KSS-----------------ARTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLFLR- 437 (723)
Q Consensus 389 g-~~~-----------~~~-----------------~~~~~~~~~~~~aL~~~~~~d~~-iv~i~aD~~gs~~l~~f~~- 437 (723)
| +.. ... ..+..-..++++.+.+.++.|++ +.++++|...|+++...-+
T Consensus 362 ~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~ 441 (793)
T COG3957 362 GEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKV 441 (793)
T ss_pred cccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHH
Confidence 0 000 000 01222356788999999999886 9999999888887743221
Q ss_pred --h--------------CCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHH---HHHHHHHHH--Hhhc-----CC
Q 004923 438 --R--------------FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQVVH--DVDL-----QK 491 (723)
Q Consensus 438 --~--------------~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl---~ra~dqi~~--~~a~-----~~ 491 (723)
+ -.+|+++ .++|+.+.|++.|+++.|.+.++++|..|+ .-++.|... .++. ..
T Consensus 442 tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~ 520 (793)
T COG3957 442 TKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRP 520 (793)
T ss_pred hhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCC
Confidence 1 1379999 899999999999999999999999999997 233333211 1111 12
Q ss_pred CCEEEEeeCCCC--CCCCCCCCCchhhHhhh-hcCCC-cEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCC
Q 004923 492 LPVRFAMDRAGL--VGADGPTHCGSFDVTFM-ACLPN-MVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELP 567 (723)
Q Consensus 492 lpv~~v~~~~G~--~G~dG~tH~~~~d~a~~-~~iP~-l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p 567 (723)
.|-...+..++. .+.+|.|||...=+..+ ...++ ++||.|.|++.+..++.+|++..+.-.+|..+|++.+.. +.
T Consensus 521 ~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~-~t 599 (793)
T COG3957 521 IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQW-LT 599 (793)
T ss_pred CCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCccee-ec
Confidence 333333334554 58999999975544443 33555 568999999999999999999878888888888864332 10
Q ss_pred CCCCCCCcccCceEEee------eC-CcEEEEEecchH-HHHHHHHHHHHhCC--CceEEeecC---cccc-------cc
Q 004923 568 PGNKGIPLEVGKGRILI------EG-ERVALLGYGTAV-QSCLAASALLESNG--LRLTVADAR---FCKP-------LD 627 (723)
Q Consensus 568 ~~~~~~~~~~gk~~vl~------eG-~dv~Iva~Gs~v-~~al~Aa~~L~~~G--i~v~VId~~---~ikP-------~d 627 (723)
....... ..++.++. +| .||++.+.|.+. -++++|+++|++++ ++++||++. .+.| ++
T Consensus 600 ~~qA~~~--~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~ 677 (793)
T COG3957 600 MEQAEKH--CTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLS 677 (793)
T ss_pred HHHHHHH--hhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCC
Confidence 0000011 12222222 12 479999999985 69999999999998 888776554 4444 23
Q ss_pred HHHHHHHhcCCCEEEEE
Q 004923 628 HALIRSLAKSHEVLITV 644 (723)
Q Consensus 628 ~~~i~~~~~~~~~vvvv 644 (723)
.+.+..+.-+.+.+|..
T Consensus 678 d~efd~lFt~d~pvif~ 694 (793)
T COG3957 678 DAEFDSLFTTDKPVIFL 694 (793)
T ss_pred HHHHHhcCCCCcceeee
Confidence 34555555455555543
No 45
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.92 E-value=4.6e-24 Score=227.49 Aligned_cols=225 Identities=25% Similarity=0.310 Sum_probs=167.0
Q ss_pred cCCHHHHHHH---HHHHHHHHHHHhh-----hcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--
Q 004923 88 NLSIRELKQL---ADELRADVIFNVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (723)
Q Consensus 88 ~~~~~~l~~l---a~~iR~~i~~~v~-----~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~-- 157 (723)
+++.++|.++ --.+|.+--++.. +.+|..+++.|..-+.+++-..++...|+++. .|++++|.+.+|.
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 3455554443 4556666555553 45689999999998888887777555699888 9999999999997
Q ss_pred hhHhHHHHhcCCCCCCCCCCC-C------CcCcc-CCcccchhhHHHHHHHHHhhhcCCCC-eEEEEEcCCcccccchHH
Q 004923 158 RDKMHTMRQTDGLSGFTKRSE-S------EYDCF-GTGHSSTSISAGLGMAVGRDLKGRKN-NVVAVIGDGAMTAGQAYE 228 (723)
Q Consensus 158 ~~~l~~~r~~~gl~g~~~~~e-~------~~~~~-g~G~~G~~ls~AlG~A~A~~~~g~~~-~vv~viGDGa~~~G~~~E 228 (723)
.+.|..+ +|...|.++++. + ....+ +.|.+|++++.|+|+|+|.|++++++ +++|++|||+.++|.+||
T Consensus 101 ~~~~a~~--~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhE 178 (358)
T COG1071 101 KEIMAEL--LGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHE 178 (358)
T ss_pred HHHHHHH--hccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHH
Confidence 3555554 232333333321 1 22334 57999999999999999999999555 999999999999999999
Q ss_pred HHHHhhhcCCCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHH
Q 004923 229 AMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307 (723)
Q Consensus 229 Aln~A~~~~~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 307 (723)
+||+|+.|++|+||+|+||++ +|.|...+.. .+.++.|
T Consensus 179 alN~A~v~klPvvf~ieNN~yAiSvp~~~q~~--------------------------------------~~~~~~r--- 217 (358)
T COG1071 179 ALNFAAVWKLPVVFVIENNQYAISVPRSRQTA--------------------------------------AEIIAAR--- 217 (358)
T ss_pred HHHHHHHhcCCEEEEEecCCceeecchhhccc--------------------------------------chhHHhh---
Confidence 999999999999999999995 4432211100 0112223
Q ss_pred HhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 004923 308 YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 308 ~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~ 371 (723)
..+||+..+ .|||+|+.++.++.++|.+. .+++|++||+.|++-.|++..
T Consensus 218 -------------a~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~s 269 (358)
T COG1071 218 -------------AAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTS 269 (358)
T ss_pred -------------hhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCC
Confidence 678999988 78999999988887765422 367999999999999998875
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.90 E-value=1.2e-22 Score=220.07 Aligned_cols=228 Identities=20% Similarity=0.222 Sum_probs=165.4
Q ss_pred CccccccCCHHHHHHHH---HHHHHHHHHHhh-----hcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHH
Q 004923 82 YPIHMKNLSIRELKQLA---DELRADVIFNVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI 153 (723)
Q Consensus 82 ~~~~~k~~~~~~l~~la---~~iR~~i~~~v~-----~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~ 153 (723)
.++|.|+++-++|.++= -.+|..--.+.. +..|+++++.|..-+.+++-..+ .|+|+++. .|++++|.+
T Consensus 10 ~~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~l 86 (341)
T CHL00149 10 TNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHAL 86 (341)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHH
Confidence 45667777877766542 333433333332 23588999999988888776666 55799888 999999999
Q ss_pred HcCC--hhHhHHHHhcCCCCCCCCC-------CCCCcCcc-CCcccchhhHHHHHHHHHhhhcC-------CCCeEEEEE
Q 004923 154 LTGR--RDKMHTMRQTDGLSGFTKR-------SESEYDCF-GTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVI 216 (723)
Q Consensus 154 l~G~--~~~l~~~r~~~gl~g~~~~-------~e~~~~~~-g~G~~G~~ls~AlG~A~A~~~~g-------~~~~vv~vi 216 (723)
..|. .+.|..+ +|.-.|++.+ ...+...+ +.|++|+++|+|+|+|+|.++++ ++++|+|++
T Consensus 87 a~G~~~~~~~ae~--~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~ 164 (341)
T CHL00149 87 SKGVPPKNVMAEL--FGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFF 164 (341)
T ss_pred HcCCCHHHHHHHH--cCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEe
Confidence 9997 3445554 2222222221 12233333 46999999999999999999887 588999999
Q ss_pred cCCcccccchHHHHHHhhhcCCCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccC
Q 004923 217 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIG 295 (723)
Q Consensus 217 GDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g 295 (723)
|||++++|++||+||+|+.|++|++|||.||++ ++.++..+.
T Consensus 165 GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~------------------------------------- 207 (341)
T CHL00149 165 GDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST------------------------------------- 207 (341)
T ss_pred CCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee-------------------------------------
Confidence 999999999999999999999999999999994 443221110
Q ss_pred CchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH----HHHhhhcCCCCcEEEEEEeccCCCcchh
Q 004923 296 GPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI----LEEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 296 ~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a----l~~a~~~~~~~P~~I~v~T~kg~G~~~~ 371 (723)
...+++ .++++||+..+ .|||+|+.++.++ ++++++ .++|++|++.|++..|++..
T Consensus 208 -~~~d~a----------------~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 208 -SIPEIH----------------KKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred -CCccHH----------------HHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 001233 33899999988 8899999876654 445554 57999999999999999864
No 47
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.90 E-value=2e-22 Score=219.01 Aligned_cols=197 Identities=19% Similarity=0.268 Sum_probs=147.9
Q ss_pred CCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHHHhcCCCCCCCCCC-------CCCcCc
Q 004923 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS-------ESEYDC 183 (723)
Q Consensus 113 ~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~-------e~~~~~ 183 (723)
.|+...+.|..-+.+++-..+ .|.|+++. .|+.++|.+..|. .+.|..+ +|.-.|++.+. ..+...
T Consensus 59 ~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~~~~~ae~--~g~~~g~~~GrggsmH~~~~~~~~ 133 (362)
T PLN02269 59 RGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTVLEVFAEL--MGRKDGCSRGKGGSMHFYKKDANF 133 (362)
T ss_pred ccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCcccccchhcCc
Confidence 478899999988888776666 46899988 8999999999997 3444444 22233333221 122333
Q ss_pred c-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 004923 184 F-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (723)
Q Consensus 184 ~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~ 262 (723)
+ ++|++|+++|.|+|+|+|.++++.++.++|++|||++++|.+|||||+|+.|++|++|||+||++ ++.|.... ..
T Consensus 134 ~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~-aist~~~~--~~ 210 (362)
T PLN02269 134 YGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHY-GMGTAEWR--AA 210 (362)
T ss_pred cccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCE-eccCchhh--hc
Confidence 3 57999999999999999999999999999999999999999999999999999999999999994 43332110 00
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 263 ~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
. ...+.. +++++..+ .|||+|+.++.+
T Consensus 211 -------------~---------------------~~~~~~------------------~~~~~p~~-~VDG~D~~av~~ 237 (362)
T PLN02269 211 -------------K---------------------SPAYYK------------------RGDYVPGL-KVDGMDVLAVKQ 237 (362)
T ss_pred -------------c---------------------chHHHH------------------hhcCCCeE-EECCCCHHHHHH
Confidence 0 011111 22345555 789999999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 004923 343 ILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 343 al~~a~~~--~~~~P~~I~v~T~kg~G~~~~ 371 (723)
+++.+.+. . ++|++|++.|++-.|++..
T Consensus 238 a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~ 267 (362)
T PLN02269 238 ACKFAKEHALS-NGPIVLEMDTYRYHGHSMS 267 (362)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCcCCCcCCC
Confidence 99876532 3 7899999999999998754
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.89 E-value=5.7e-22 Score=211.45 Aligned_cols=201 Identities=23% Similarity=0.279 Sum_probs=153.9
Q ss_pred hcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHHHhcCCCCCCCCCC--------CCC
Q 004923 111 KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS--------ESE 180 (723)
Q Consensus 111 ~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~--------e~~ 180 (723)
+..|+..++.|..-+.+++-..++ |+|+++. .|+++++.+.+|. .+.|..+ +|...|..++. ...
T Consensus 23 ~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~~~~~e~--~g~~~g~~~G~~g~~h~~~~~~ 97 (293)
T cd02000 23 KIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLKEMLAEL--FGKETGPCKGRGGSMHIGDKEK 97 (293)
T ss_pred ccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCCCCCCchhc
Confidence 455778889999999999888774 6899886 9999999999997 3444444 22222222211 122
Q ss_pred cCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCC
Q 004923 181 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 260 (723)
Q Consensus 181 ~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~ 260 (723)
....+.|++|+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.+++|+++||+||++ ++.+.....
T Consensus 98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~- 175 (293)
T cd02000 98 NFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQ- 175 (293)
T ss_pred CccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHH-
Confidence 334478999999999999999999999999999999999999999999999999999999999999983 432211000
Q ss_pred CCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHH
Q 004923 261 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 340 (723)
Q Consensus 261 ~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l 340 (723)
.-.++...++++||+.++ .|||+|++++
T Consensus 176 ---------------------------------------------------~~~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 176 ---------------------------------------------------TAGTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred ---------------------------------------------------hCCccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 001223345899999987 8899999998
Q ss_pred HHHHHHhhhc--CCCCcEEEEEEeccCCCcch
Q 004923 341 VAILEEVKNT--KTTGPVLIHVVTEKGRGYPY 370 (723)
Q Consensus 341 ~~al~~a~~~--~~~~P~~I~v~T~kg~G~~~ 370 (723)
.++++++.+. ..++|++|++.|.+..|++.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 8888765421 25799999999999999874
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.89 E-value=8.4e-22 Score=218.06 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=148.5
Q ss_pred CCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHHHhcCCCCCCCCCC-------CCCcCc
Q 004923 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS-------ESEYDC 183 (723)
Q Consensus 113 ~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~-------e~~~~~ 183 (723)
.|..+.+.|..-+.+++-..+ +|.|+++. .|+.++|.+..|. ++.|.++ +|...|.+.+. ......
T Consensus 115 ~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~~~~mael--~Gk~~g~~~GrggsmH~~~~~~~~ 189 (433)
T PLN02374 115 FGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPARAVMSEL--FGKATGCCRGQGGSMHMFSKEHNL 189 (433)
T ss_pred eeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCHHHHHHHH--cCCCCCCCCCCCCcCccCchhhCC
Confidence 478888999988888877666 45799877 9999999999997 3445554 22222322211 122233
Q ss_pred c-CCcccchhhHHHHHHHHHhhhcC-------CCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCC-CCcCc
Q 004923 184 F-GTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPT 254 (723)
Q Consensus 184 ~-g~G~~G~~ls~AlG~A~A~~~~g-------~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~-~s~~t 254 (723)
+ +.|++|+++|.|+|+|+|.++++ ++++|||++|||++++|++||+||+|+.|++|+||||+||++ ++.++
T Consensus 190 ~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~ 269 (433)
T PLN02374 190 LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 269 (433)
T ss_pred CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeeccee
Confidence 3 46899999999999999999886 488999999999999999999999999999999999999984 34332
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCC
Q 004923 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (723)
Q Consensus 255 ~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDG 334 (723)
..+. . ..++++ ++++|||..+ .|||
T Consensus 270 ~~~t---~-----------------------------------~~dia~----------------~A~a~G~~~~-~VDG 294 (433)
T PLN02374 270 LRAT---S-----------------------------------DPEIWK----------------KGPAFGMPGV-HVDG 294 (433)
T ss_pred eecc---C-----------------------------------CCCHHH----------------HHHhcCCcEE-EECC
Confidence 1110 0 012333 3889999988 7999
Q ss_pred CCHHHHHHH----HHHhhhcCCCCcEEEEEEeccCCCcchh
Q 004923 335 HNVDDLVAI----LEEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 335 hd~~~l~~a----l~~a~~~~~~~P~~I~v~T~kg~G~~~~ 371 (723)
+|+.++.++ ++.+++ .++|++|++.|++.+|++..
T Consensus 295 ~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 295 MDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred CCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 999987754 455554 57999999999999999864
No 50
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.87 E-value=1.2e-21 Score=209.19 Aligned_cols=205 Identities=22% Similarity=0.275 Sum_probs=147.5
Q ss_pred hcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHHHh-cCCCCCCCC-CC--CCC-cCc
Q 004923 111 KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQ-TDGLSGFTK-RS--ESE-YDC 183 (723)
Q Consensus 111 ~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~-~~gl~g~~~-~~--e~~-~~~ 183 (723)
+..|..+++.|...+.+++...+ .|.|+++. .|++.++.+..|. .+.|..+.- ..+..|-.. .. ... +..
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l-~~~D~v~~--~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAAL-RPGDWVFP--YYRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHS-CTTSEEEE--CSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhc-cCCCEEEe--cccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 35688889999988888887666 56699888 6999999999987 344555421 112222111 10 111 122
Q ss_pred cCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 004923 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 184 ~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
.+.+++|.++|.|+|+|+|.++++.+..++|++|||++++|.+||+||+|+.|++|+||||+||++ ++.|.......
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~-aist~~~~~~~-- 174 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQY-AISTPTEEQTA-- 174 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESE-ETTEEHHHHCS--
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCc-ccccCcccccc--
Confidence 357999999999999999999999999999999999999999999999999999999999999994 43332111000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
..+...++++||+..+ .|||+|+.++.++
T Consensus 175 --------------------------------------------------~~~~~~~a~~~gip~~-~VDG~D~~av~~a 203 (300)
T PF00676_consen 175 --------------------------------------------------SPDIADRAKGYGIPGI-RVDGNDVEAVYEA 203 (300)
T ss_dssp --------------------------------------------------SSTSGGGGGGTTSEEE-EEETTSHHHHHHH
T ss_pred --------------------------------------------------ccchhhhhhccCCcEE-EECCEeHHHHHHH
Confidence 0112234789999988 8999999998888
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 004923 344 LEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 344 l~~a~~~--~~~~P~~I~v~T~kg~G~~~~e 372 (723)
+++|.+. ..++|++|++.|++-.|++..+
T Consensus 204 ~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 204 AKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 7765432 3689999999999999987653
No 51
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87 E-value=4.2e-21 Score=206.37 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=151.2
Q ss_pred cCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHHHhcCCCCCCCCCC-------CCCcC
Q 004923 112 TGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS-------ESEYD 182 (723)
Q Consensus 112 ~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~-------e~~~~ 182 (723)
..|+..++.|..-+.+++-..+ .|+|+++. .|+.+++.+..|. .+.|..+ +|...|++.+. .....
T Consensus 30 ~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~~~~~~~--~g~~~g~~~Gr~g~~h~~~~~~~ 104 (315)
T TIGR03182 30 IGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPKEVMAEL--TGRATGCSKGKGGSMHMFDREKN 104 (315)
T ss_pred cccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCCCCcCchhhC
Confidence 4578888999988888776666 46798888 9999999999997 3444443 22223322221 11222
Q ss_pred cc-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCC
Q 004923 183 CF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 261 (723)
Q Consensus 183 ~~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~ 261 (723)
.+ +.|++|+++|.|+|+|+|.++++++++|+|++|||++++|.+||+||+|+.+++|+++||.||+ +.+.|....
T Consensus 105 ~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~--- 180 (315)
T TIGR03182 105 FYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVER--- 180 (315)
T ss_pred cccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHH---
Confidence 33 5699999999999999999999999999999999999999999999999999999999999997 343221100
Q ss_pred CCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHH
Q 004923 262 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (723)
Q Consensus 262 ~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~ 341 (723)
.. -.++...++++||+.++ .|||+|+.++.
T Consensus 181 ------------~~-------------------------------------~~~~~a~~A~a~G~~~~-~Vdg~d~~av~ 210 (315)
T TIGR03182 181 ------------SS-------------------------------------SVTDLYKRGESFGIPGE-RVDGMDVLAVR 210 (315)
T ss_pred ------------Hh-------------------------------------CCcCHHHHHHhCCCCEE-EECCCCHHHHH
Confidence 00 01223344899999987 79999999888
Q ss_pred HHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 004923 342 AILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 342 ~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~ 371 (723)
++++++.+. ..++|++|++.|++-.|+...
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 777765421 257999999999999998754
No 52
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.87 E-value=5.1e-23 Score=191.81 Aligned_cols=123 Identities=35% Similarity=0.599 Sum_probs=114.9
Q ss_pred CceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHH
Q 004923 578 GKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 656 (723)
Q Consensus 578 gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v 656 (723)
||+.++++|+|++||+||++++.|++|++.|+++||+++|||++|++|||++.+.++++++++++|+|++. .||||++|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHH
Q 004923 657 VQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 701 (723)
Q Consensus 657 ~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I 701 (723)
++++.++++.....++++++.+|.|+++| ..++++++|+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999987743457899999999999999 999999999999987
No 53
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.86 E-value=4.7e-20 Score=200.81 Aligned_cols=251 Identities=19% Similarity=0.175 Sum_probs=183.3
Q ss_pred hhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCc
Q 004923 435 FLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCG 513 (723)
Q Consensus 435 f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~ 513 (723)
+.+++...|+. .-+|++++++|.|+|++|.|.+++|.++++..+++++ ..++..++|++++. .|.|. .-|.|+..
T Consensus 43 ~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~p--~~g~t~~e 118 (352)
T PRK07119 43 RLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGGP--GLGNIQPS 118 (352)
T ss_pred HHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCCC--CCCCCcch
Confidence 33445567788 8999999999999999999999999999999999986 57899999987776 55553 22458888
Q ss_pred hhhHhhhhc-----CCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC---CccccCCC------CCCCCCcc
Q 004923 514 SFDVTFMAC-----LPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP------GNKGIPLE 576 (723)
Q Consensus 514 ~~d~a~~~~-----iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~---~~~~~~p~------~~~~~~~~ 576 (723)
..|+.+.+. --++.+++|+|++|++++...|++. ..-|++++.+... ...+.+|+ +.....+
T Consensus 119 q~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~- 197 (352)
T PRK07119 119 QGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAV- 197 (352)
T ss_pred hHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCcc-
Confidence 888766532 2248999999999999999999985 4459999876531 01111111 0000000
Q ss_pred cCce--------------------------------------E-EeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEE
Q 004923 577 VGKG--------------------------------------R-ILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 617 (723)
Q Consensus 577 ~gk~--------------------------------------~-vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~V 617 (723)
.+.. . ...+++|++||++|+++..+++|++.|+++|+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~v 277 (352)
T PRK07119 198 TGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGL 277 (352)
T ss_pred CCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEE
Confidence 0100 0 001467999999999999999999999999999999
Q ss_pred eecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCC
Q 004923 618 ADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLT 697 (723)
Q Consensus 618 Id~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~ 697 (723)
++++++||||.+.|.+++++++.|+|+|++ .|.+..+|...+.. ..++..++- + .|. -++
T Consensus 278 i~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~------~~~~~~i~k---~--~G~--------~~~ 337 (352)
T PRK07119 278 FRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNG------KKPVEFYGR---M--GGM--------VPT 337 (352)
T ss_pred EeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCC------CCceeEEec---c--CCE--------eCC
Confidence 999999999999999999999999999998 46677776643321 011122221 1 111 168
Q ss_pred HHHHHHHHHHHHh
Q 004923 698 PSHIAATVFNILG 710 (723)
Q Consensus 698 ~e~I~~~i~~ll~ 710 (723)
++.|.+.++++++
T Consensus 338 ~~~i~~~~~~~~~ 350 (352)
T PRK07119 338 PEEILEKIKEILG 350 (352)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999998874
No 54
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.86 E-value=4.7e-20 Score=200.25 Aligned_cols=222 Identities=20% Similarity=0.242 Sum_probs=158.1
Q ss_pred cCCHHHHHHH---HHHHHHHHHHHhh--hcC--CCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--h
Q 004923 88 NLSIRELKQL---ADELRADVIFNVS--KTG--GHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--R 158 (723)
Q Consensus 88 ~~~~~~l~~l---a~~iR~~i~~~v~--~~~--GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~ 158 (723)
+++.++|.++ --.+|..-..+.. +.| |...++.|..-+.+++-..+ +|.|+++. .|++++|.+..|. .
T Consensus 20 ~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 20 DLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGVPLV 96 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCCCHH
Confidence 3555554433 3344444433332 222 66778999988888877777 46899887 9999999999997 3
Q ss_pred hHhHHHHhcCCCCCCCCCCCCCcCcc-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC
Q 004923 159 DKMHTMRQTDGLSGFTKRSESEYDCF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD 237 (723)
Q Consensus 159 ~~l~~~r~~~gl~g~~~~~e~~~~~~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~ 237 (723)
+.|..+ .|.-.|-... .....+ ++|++|.++|.|+|+|+|.++.+++++|+|++|||++++|.+||+||+|+.++
T Consensus 97 ~~~ae~--~g~~~g~~~~--~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~ 172 (341)
T TIGR03181 97 EILLYW--RGDERGSWDP--EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFK 172 (341)
T ss_pred HHHHHh--cCcCcCCCCc--hhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccC
Confidence 444444 2222221111 223444 46889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCc
Q 004923 238 SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSG 317 (723)
Q Consensus 238 ~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~ 317 (723)
+|+++||.||++ .+.+.... . ...+++
T Consensus 173 LPvi~Vv~NN~~-~~~~~~~~-----------------------------------------~-----------~~~~d~ 199 (341)
T TIGR03181 173 APVVFFVQNNQW-AISVPRSK-----------------------------------------Q-----------TAAPTL 199 (341)
T ss_pred CCEEEEEECCCC-ccccchhh-----------------------------------------h-----------hCCcCH
Confidence 999999999984 32111000 0 001223
Q ss_pred cchhhccCCeEEEecCCCCHHHHHHHHH----HhhhcCCCCcEEEEEEeccCCCcchhh
Q 004923 318 STLFEELGLYYIGPVDGHNVDDLVAILE----EVKNTKTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 318 ~~lfea~G~~~~~~vDGhd~~~l~~al~----~a~~~~~~~P~~I~v~T~kg~G~~~~e 372 (723)
..++++||+.++ .|||+|..++.++++ .+++ .++|++|++.|++-.|++..+
T Consensus 200 ~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 200 AQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred HHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeecCCCCCCCC
Confidence 345899999988 789999977666554 4444 579999999999999987543
No 55
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.84 E-value=1.1e-19 Score=211.60 Aligned_cols=245 Identities=20% Similarity=0.256 Sum_probs=186.9
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhh--cCCCCEEEEe-eCCCCCCCCCCCCCchhhH
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD--LQKLPVRFAM-DRAGLVGADGPTHCGSFDV 517 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a--~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~ 517 (723)
+-++....+|.+++.++.|+|++|.|.+++|.++.+.++.|++.. ++ .+++|++++. ++.| .++|+....|.
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~g----p~~~~~~q~d~ 120 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDPS----MHSSQNEQDTR 120 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCCC----CccchhhHhHH
Confidence 456677789999999999999999999999999999999999865 44 3477777776 4433 24788888887
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCCC---ccccCCCC---C--CCCCcccCc-------
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNG---IGVELPPG---N--KGIPLEVGK------- 579 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~~---~~~~~p~~---~--~~~~~~~gk------- 579 (723)
.+.+. .++.|+.|+|++|++++...|++. ..-|++++++.... ..+.+++. . .....+..+
T Consensus 121 ~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (595)
T TIGR03336 121 HYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAI 199 (595)
T ss_pred HHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchh
Confidence 66665 588899999999999999999985 55699998764211 11111110 0 000000000
Q ss_pred -----------------------e-EEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh
Q 004923 580 -----------------------G-RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 635 (723)
Q Consensus 580 -----------------------~-~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~ 635 (723)
. .+..+++|++||++|++++.+++|++.| |++++|++++++||||++.|++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~ 276 (595)
T TIGR03336 200 ARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFL 276 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHH
Confidence 0 1112457999999999999999987765 999999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004923 636 KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 708 (723)
Q Consensus 636 ~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~l 708 (723)
++++.|||+||+. +++++.+..++...+ .+++++|++|.|++ +..+||++.|.++++++
T Consensus 277 ~~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 277 SGVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHGKEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred hcCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEecccCCccC--------cccCcCHHHHHHHHHHh
Confidence 9999999999997 566665555544432 37889999999997 46789999999999876
No 56
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.83 E-value=5e-19 Score=194.24 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=163.1
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCCCchhh
Q 004923 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFD 516 (723)
Q Consensus 439 ~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~-~G~dG~tH~~~~d 516 (723)
....|+..- +|++++++|.|+|++|.|.+++|.++.+..+.+++ ..++..++|++++. +|+|. +|. ||++...|
T Consensus 47 ~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp~tg~--p~~~~q~D 122 (376)
T PRK08659 47 VGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGPSTGQ--PTKPAQGD 122 (376)
T ss_pred hCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCCCCCC--CCCcCcHH
Confidence 345678877 99999999999999999999999999988999986 45677799988776 67775 443 67877778
Q ss_pred Hhhhh-----cCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC---CccccCCCC----------------
Q 004923 517 VTFMA-----CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPPG---------------- 569 (723)
Q Consensus 517 ~a~~~-----~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~---~~~~~~p~~---------------- 569 (723)
+...+ .. ++.|++|+|++|++++...|++. .+.|++++.+... ...+++|+.
T Consensus 123 ~~~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 201 (376)
T PRK08659 123 MMQARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPE 201 (376)
T ss_pred HHHHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcc
Confidence 66555 22 47899999999999999999985 4469998776421 001111100
Q ss_pred -CCCCC-----cc----cCce--------------------------------------------EEee-eCCcEEEEEe
Q 004923 570 -NKGIP-----LE----VGKG--------------------------------------------RILI-EGERVALLGY 594 (723)
Q Consensus 570 -~~~~~-----~~----~gk~--------------------------------------------~vl~-eG~dv~Iva~ 594 (723)
...+. ++ .+.+ .... +++|++||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~ 281 (376)
T PRK08659 202 AYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAY 281 (376)
T ss_pred ccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEe
Confidence 00000 00 0100 0001 4689999999
Q ss_pred cchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 595 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
|++...+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||++ .|.+..++...+
T Consensus 282 Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~ 346 (376)
T PRK08659 282 GSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVV 346 (376)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 466665555443
No 57
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.81 E-value=1.5e-18 Score=189.87 Aligned_cols=214 Identities=16% Similarity=0.193 Sum_probs=163.0
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCCCchhhHh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFDVT 518 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~-~G~dG~tH~~~~d~a 518 (723)
..++.+ =+|++++++|.|+|++|.|.+++|.++.+..+.+++ ..++..++|++++. +|+|. +|. ||.....|+.
T Consensus 48 ~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~GpstG~--p~~~~q~D~~ 123 (375)
T PRK09627 48 GTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGPSTGL--PTRVAQGDVN 123 (375)
T ss_pred CEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCCcCCC--CCccchHHHH
Confidence 344444 399999999999999999999999999888888886 46788999988866 67776 443 7777777887
Q ss_pred hhh-----cCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC---CccccCCC----------------C--
Q 004923 519 FMA-----CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP----------------G-- 569 (723)
Q Consensus 519 ~~~-----~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~---~~~~~~p~----------------~-- 569 (723)
..+ ..| ++|++|+|++|++++...|++. ...|++++.+... ...+.+|+ .
T Consensus 124 ~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
T PRK09627 124 QAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKK 202 (375)
T ss_pred HHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcc
Confidence 766 444 4599999999999999999985 4559998776421 00111110 0
Q ss_pred -CCCCCc----c-----cCc-eE-------------------------------------------Eee-eCCcEEEEEe
Q 004923 570 -NKGIPL----E-----VGK-GR-------------------------------------------ILI-EGERVALLGY 594 (723)
Q Consensus 570 -~~~~~~----~-----~gk-~~-------------------------------------------vl~-eG~dv~Iva~ 594 (723)
+..+.+ | .+. +. ... +++|++||+|
T Consensus 203 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~ 282 (375)
T PRK09627 203 DYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAY 282 (375)
T ss_pred cccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEe
Confidence 000000 0 000 00 000 3578999999
Q ss_pred cchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 595 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
|+....+.+|++.|+++|++++++.+++++|||.+.+++.+++.+.|+++|++. |.+..+|...+
T Consensus 283 GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~ 347 (375)
T PRK09627 283 GSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVM 347 (375)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999997 88887776655
No 58
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.81 E-value=7.4e-18 Score=187.05 Aligned_cols=253 Identities=17% Similarity=0.169 Sum_probs=184.0
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFM 520 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~~ 520 (723)
.++.. =+|+++++++.|+|++|.|.+++|.++.+..+.|.+. .++..++|++++. .|+|.. .-+++....|+...
T Consensus 58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~-~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~~ 133 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVLY-QASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYLS 133 (407)
T ss_pred EEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHHH-HHHHhhCCEEEEEeccccCC--CcCCCchHHHHHHH
Confidence 45554 3999999999999999999999999999999999864 6789999977776 444422 36899999998776
Q ss_pred hcCCCcEEEccCCHHHHHHHHHHHHHhC-----CCCEEEEecCCC----CccccCCCC---------CCCC--------C
Q 004923 521 ACLPNMVVMAPSDEAELFHMVATAAAID-----DRPSCFRYPRGN----GIGVELPPG---------NKGI--------P 574 (723)
Q Consensus 521 ~~iP~l~V~~Psd~~E~~~~l~~A~~~~-----~~P~~ir~~r~~----~~~~~~p~~---------~~~~--------~ 574 (723)
+. .++.+++|+|++|++++...|++.. ..|++++++... ...+++|+. ++.+ +
T Consensus 134 r~-~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p 212 (407)
T PRK09622 134 RD-SGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKP 212 (407)
T ss_pred hc-CCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCC
Confidence 64 6899999999999999999999852 579998876542 111111100 0000 0
Q ss_pred --ccc------------------------------------CceEE-ee----eCCcEEEEEecchHHHHHHHHHHHHhC
Q 004923 575 --LEV------------------------------------GKGRI-LI----EGERVALLGYGTAVQSCLAASALLESN 611 (723)
Q Consensus 575 --~~~------------------------------------gk~~v-l~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~ 611 (723)
... ++.+. .. +++|++||++|+++..+++|++.|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~ 292 (407)
T PRK09622 213 VTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKE 292 (407)
T ss_pred ccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhC
Confidence 000 00000 00 367899999999999999999999999
Q ss_pred CCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCC-CcceEEeecCCccccCCCHHH
Q 004923 612 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDG-TVKWRPLVLPDRYIDHGSPAD 689 (723)
Q Consensus 612 Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~-~~~~~~~~~~d~~~~~g~~~e 689 (723)
|+++++|++++++|||.+.+.+++++++.|+|+|++. .||+|+.+.+.+..-..... ..++ -....|+..|.
T Consensus 293 G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~---v~~~~~g~gG~--- 366 (407)
T PRK09622 293 GIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPV---VSNYIYGLGGR--- 366 (407)
T ss_pred CCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCce---EeeeEECCCCC---
Confidence 9999999999999999999999999999999999997 68888866665543211100 0111 01122333221
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 004923 690 QLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 690 l~~~~gl~~e~I~~~i~~ll~ 710 (723)
-+++++|.+.++++..
T Consensus 367 -----~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 367 -----DMTIAHLCEIFEELNE 382 (407)
T ss_pred -----CCCHHHHHHHHHHHHh
Confidence 2789999998888765
No 59
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.79 E-value=9.8e-19 Score=176.83 Aligned_cols=167 Identities=22% Similarity=0.309 Sum_probs=124.2
Q ss_pred CCchH---HHHHHHcCC--------h---hHhH-HHHh---cCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhh
Q 004923 144 VGHQT---YPHKILTGR--------R---DKMH-TMRQ---TDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDL 205 (723)
Q Consensus 144 ~GH~~---y~~~~l~G~--------~---~~l~-~~r~---~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~ 205 (723)
.||.+ |+.++|.|. + +.|. .||| .||+++|+.+ +.++....+|++|++++.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 58888 888889992 2 1243 4566 4668899986 678888899999999999999974
Q ss_pred cCCCCeEEEEEcCCcccccch---HHHHHHhhhcC-CCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhh
Q 004923 206 KGRKNNVVAVIGDGAMTAGQA---YEAMNNAGYLD-SDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPL 280 (723)
Q Consensus 206 ~g~~~~vv~viGDGa~~~G~~---~EAln~A~~~~-~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~ 280 (723)
++++.+|+|++||||+++|.+ ||+.+++...+ .||+.|+++|++ ++.||... . +
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~--~------~------------- 135 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILA--R------I------------- 135 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCcccc--c------c-------------
Confidence 567899999999999999996 99988888765 899999999984 43333210 0 0
Q ss_pred HHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHh-------------
Q 004923 281 RELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV------------- 347 (723)
Q Consensus 281 ~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a------------- 347 (723)
..+++.++ |++|||+.+ .|||||++++.++++++
T Consensus 136 ----------------~~e~l~~~----------------~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~ 182 (227)
T cd02011 136 ----------------SHEELEAL----------------FRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQK 182 (227)
T ss_pred ----------------CchhHHHH----------------HHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11455655 999999988 68999998766655422
Q ss_pred --hhc-CCCCc--EEEEEEeccCCCcc
Q 004923 348 --KNT-KTTGP--VLIHVVTEKGRGYP 369 (723)
Q Consensus 348 --~~~-~~~~P--~~I~v~T~kg~G~~ 369 (723)
|.. ...+| -+|.++|.||+.-|
T Consensus 183 ~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 183 RAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 211 12345 38999999999754
No 60
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=5.8e-17 Score=178.21 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=160.2
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhhhhcCCC
Q 004923 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMACLPN 525 (723)
Q Consensus 447 GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~~~~iP~ 525 (723)
.=+|++++++|.|+|++|.|.+++|.+..+..+.|++. .+++.++|++++. .|+|. + .+++|+...|+.+.+. .+
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l~-~aa~~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGLALMHEMLH-WAAGARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHHH-HHHhcCCCEEEEEeccCCC-C-CCCCcchhhHHHHHhh-cC
Confidence 35999999999999999999999999999999999874 6789999988776 66664 3 4689988889877665 58
Q ss_pred cEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCCC----cccc----------CCCCCC-------CCCcc-----
Q 004923 526 MVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNG----IGVE----------LPPGNK-------GIPLE----- 576 (723)
Q Consensus 526 l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~~----~~~~----------~p~~~~-------~~~~~----- 576 (723)
+.+++|+|++|++++...|++. ..-|++++.+...+ .... +|+... +.+..
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 9999999999999999999985 45699988754210 0000 110000 00000
Q ss_pred ---------------------------------cCceEE-e-e----eCCcEEEEEecchHHHHHHHHHHHHhCCCceEE
Q 004923 577 ---------------------------------VGKGRI-L-I----EGERVALLGYGTAVQSCLAASALLESNGLRLTV 617 (723)
Q Consensus 577 ---------------------------------~gk~~v-l-~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~V 617 (723)
+|+.+. + . +++|++||+||+....+.+|++.|+++|+++++
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 011111 1 1 357899999999999999999999999999999
Q ss_pred eecCccccccHHHHHHHhcCCCEEEEEcCCCC-CChHH
Q 004923 618 ADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGS 654 (723)
Q Consensus 618 Id~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~-gG~g~ 654 (723)
+.+++++|||.+.|++++++.+.|+++|.+.+ |.+|.
T Consensus 291 l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~ 328 (390)
T PRK08366 291 AKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGI 328 (390)
T ss_pred EEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccH
Confidence 99999999999999999999999999999975 76553
No 61
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.78 E-value=2.3e-18 Score=177.31 Aligned_cols=198 Identities=23% Similarity=0.333 Sum_probs=148.6
Q ss_pred cCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--hhHhHHH--HhcCCCCCCCCCCC-CC----cC
Q 004923 112 TGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTM--RQTDGLSGFTKRSE-SE----YD 182 (723)
Q Consensus 112 ~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~--~~~l~~~--r~~~gl~g~~~~~e-~~----~~ 182 (723)
..|.-+.+-|+..+.+.+-..+ ++.|-+|. ..+|+++.+++|. ++-|.++ ||.| ..+++. |. -.
T Consensus 87 IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aEL~Gr~~G----c~kGKGGSMHmy~k~ 159 (394)
T KOG0225|consen 87 IRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAELMGRQAG----CSKGKGGSMHMYAKN 159 (394)
T ss_pred hceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHHHhccccc----cccCCCcceeeeccc
Confidence 4687778899998888886666 66799988 6778888889996 5777777 4443 222211 11 11
Q ss_pred cc-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCC
Q 004923 183 CF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 261 (723)
Q Consensus 183 ~~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~ 261 (723)
++ |.|.+|.++|.+.|+|+|.++++++..++++.|||+.++|++|||+|+|..|++|+||||+||++ .+.|...
T Consensus 160 FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~y-GMGTs~~---- 234 (394)
T KOG0225|consen 160 FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHY-GMGTSAE---- 234 (394)
T ss_pred ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCC-ccCcchh----
Confidence 33 68999999999999999999999999999999999999999999999999999999999999985 3322110
Q ss_pred CCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHH
Q 004923 262 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (723)
Q Consensus 262 ~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~ 341 (723)
|...+ .+... |+ .| ++.+ .|||.|+-.+.
T Consensus 235 -----------Rasa~---------------------teyyk------RG-----------~y-iPGl-~VdGmdvlaVr 263 (394)
T KOG0225|consen 235 -----------RASAS---------------------TEYYK------RG-----------DY-IPGL-KVDGMDVLAVR 263 (394)
T ss_pred -----------hhhcC---------------------hHHHh------cc-----------CC-CCce-EECCcchhhHH
Confidence 00000 11111 11 11 3344 68999999999
Q ss_pred HHHHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 004923 342 AILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 342 ~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~e 372 (723)
+|.+.|++. ++++|.++|+.|++-.|++.++
T Consensus 264 ~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 264 EATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 999988754 4589999999999999987643
No 62
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.77 E-value=1.8e-16 Score=174.82 Aligned_cols=246 Identities=16% Similarity=0.160 Sum_probs=179.3
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCc
Q 004923 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNM 526 (723)
Q Consensus 447 GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l 526 (723)
.=+|+++++++.|+|++|.|.+++|.++.+..+.|++ ..++..++|++++....++ +...++|+...|+...+. -++
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~ 132 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGW 132 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCe
Confidence 4599999999999999999999999999999999986 4789999999998744342 334578888888766665 468
Q ss_pred EEEccCCHHHHHHHHHHHHHhCC-----CCEEEEecCCC----CccccCCCC---------CCC--------CCcc----
Q 004923 527 VVMAPSDEAELFHMVATAAAIDD-----RPSCFRYPRGN----GIGVELPPG---------NKG--------IPLE---- 576 (723)
Q Consensus 527 ~V~~Psd~~E~~~~l~~A~~~~~-----~P~~ir~~r~~----~~~~~~p~~---------~~~--------~~~~---- 576 (723)
.+++|+|.||+.++...|++..+ .|++++++... ..++.+|+. ++. .+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~ 212 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGAL 212 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCC
Confidence 89999999999999999998655 49998776531 111111110 000 0000
Q ss_pred ----------------------------------cCceE-Eee----eCCcEEEEEecchHHHHHHHHHHHHhCCCceEE
Q 004923 577 ----------------------------------VGKGR-ILI----EGERVALLGYGTAVQSCLAASALLESNGLRLTV 617 (723)
Q Consensus 577 ----------------------------------~gk~~-vl~----eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~V 617 (723)
.|+.+ .+. +++|++||++|+....+.+|++.|+++|++|++
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGl 292 (394)
T PRK08367 213 AFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGA 292 (394)
T ss_pred CCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCccee
Confidence 11111 111 467999999999999999999999999999999
Q ss_pred eecCccccccHHHHHHHhcCCCEEEEEcCCCC----CChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHH
Q 004923 618 ADARFCKPLDHALIRSLAKSHEVLITVEEGSI----GGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQ 693 (723)
Q Consensus 618 Id~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~----gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~ 693 (723)
+.+++++|||.+.+++++++.+.|+|+|.+.+ |.+..+|...+...+ ...++..+ .++..|.
T Consensus 293 lri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~----~~glgg~------- 358 (394)
T PRK08367 293 AKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDF----IIGLGGR------- 358 (394)
T ss_pred EEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEE----EeCCCCC-------
Confidence 99999999999999999999999999999863 455666666653221 11222211 1222222
Q ss_pred cCCCHHHHHHHHHHHHh
Q 004923 694 AGLTPSHIAATVFNILG 710 (723)
Q Consensus 694 ~gl~~e~I~~~i~~ll~ 710 (723)
.+++++|.+.+.++++
T Consensus 359 -~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 359 -DVTFKQLDEALEIAEK 374 (394)
T ss_pred -CCCHHHHHHHHHHHHH
Confidence 2789999988887664
No 63
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.76 E-value=3.8e-17 Score=188.50 Aligned_cols=218 Identities=18% Similarity=0.226 Sum_probs=168.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~ 519 (723)
+-.+--.-+|++++++|.|+|++|.|.+++|.++.+..+.|.+ ..++..++|++++. +|+|. ...-||+....|+.+
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~ 314 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLF 314 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHH
Confidence 4556667899999999999999999999999999888999987 67788999988877 67775 222478988889877
Q ss_pred hhcCC----CcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC---CccccCCC-----------------CCCC
Q 004923 520 MACLP----NMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP-----------------GNKG 572 (723)
Q Consensus 520 ~~~iP----~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~---~~~~~~p~-----------------~~~~ 572 (723)
.+.-- ++.|++|+|++|++++...|++. ...|++++.+... ...+++|+ .+..
T Consensus 315 ~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (562)
T TIGR03710 315 ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKR 394 (562)
T ss_pred HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCC
Confidence 66421 38899999999999999999985 4569998776431 00111110 0000
Q ss_pred C--------Ccc-cCc--e-------------------------------------------EEe-eeCCcEEEEEecch
Q 004923 573 I--------PLE-VGK--G-------------------------------------------RIL-IEGERVALLGYGTA 597 (723)
Q Consensus 573 ~--------~~~-~gk--~-------------------------------------------~vl-~eG~dv~Iva~Gs~ 597 (723)
+ +.. .|. . ... .+++|++||+||++
T Consensus 395 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~ 474 (562)
T TIGR03710 395 YELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGST 474 (562)
T ss_pred CCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCC
Confidence 0 000 010 0 000 02568999999999
Q ss_pred HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 598 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 598 v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
...+.+|++.|+++|++++++.+++++|||.+.|++.+++.+.|+++|++..|.+..+|...+
T Consensus 475 ~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 475 YGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888888877655
No 64
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.73 E-value=5.9e-17 Score=167.95 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=139.5
Q ss_pred CCCCCCcccHHHHHHHHhhccCCC----CcEEEeCCCchHHHHHHH--cCC--hhHhHHHHhcCC----------CC---
Q 004923 113 GGHLGSSLGVIELTVALHYVFNAP----KDRILWDVGHQTYPHKIL--TGR--RDKMHTMRQTDG----------LS--- 171 (723)
Q Consensus 113 ~GH~gsslg~~el~~aL~~~~~~p----~D~~i~s~GH~~y~~~~l--~G~--~~~l~~~r~~~g----------l~--- 171 (723)
.++++ .-|..-+.++|...++.. -+.+|+...|+.-...+. .|. .+.|.+|..... ..
T Consensus 12 ~krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHl 90 (265)
T cd02016 12 QKRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHL 90 (265)
T ss_pred CeEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCC
Confidence 35554 777777777777666542 245677777888555444 554 344555532111 11
Q ss_pred CCCCCCCCC-------cCccCCcccchhhHHHHHHHHHhhhcC-----CCCeEEEEEcCCcc-cccchHHHHHHhhhcCC
Q 004923 172 GFTKRSESE-------YDCFGTGHSSTSISAGLGMAVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDS 238 (723)
Q Consensus 172 g~~~~~e~~-------~~~~g~G~~G~~ls~AlG~A~A~~~~g-----~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~ 238 (723)
|++...+.. ......+|+|..+|.|+|+|+|.++++ ++..++|++|||++ .+|.+||+||+|+.|++
T Consensus 91 g~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~l 170 (265)
T cd02016 91 GYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGY 170 (265)
T ss_pred ccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCC
Confidence 111111110 011235789999999999999999998 47889999999996 69999999999999998
Q ss_pred C---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCC
Q 004923 239 D---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISG 315 (723)
Q Consensus 239 n---li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~ 315 (723)
| +|+||+||++ ++.|...+.. + ...+.+
T Consensus 171 p~gg~ifvveNNq~-g~sT~~~~~~---------------~---------------------~~~~~~------------ 201 (265)
T cd02016 171 TTGGTIHIVVNNQI-GFTTDPRDSR---------------S---------------------SPYCTD------------ 201 (265)
T ss_pred CCCCEEEEEEeCCE-EEEecHHHhc---------------c---------------------cccHHH------------
Confidence 8 9999999984 4433211100 0 011222
Q ss_pred CccchhhccCCeEEEecCCCCHHHHHHHHHHhhh--cCCCCcEEEEEEeccCCCcchh
Q 004923 316 SGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 316 ~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~--~~~~~P~~I~v~T~kg~G~~~~ 371 (723)
++++||+..+ .|||+|++++.++.++|.+ .+.++|++|++.|++-+|+...
T Consensus 202 ----~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 202 ----VAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred ----HHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 2788999987 8999999999988876543 2368999999999999998643
No 65
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.65 E-value=9.4e-14 Score=160.52 Aligned_cols=421 Identities=20% Similarity=0.188 Sum_probs=261.4
Q ss_pred hHHHHHHHHHhhh-cC--C---CCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCCcCccCCCCCCC
Q 004923 193 ISAGLGMAVGRDL-KG--R---KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIP 262 (723)
Q Consensus 193 ls~AlG~A~A~~~-~g--~---~~~vv~viGDGa~-~~G~~~EAln~A~~~~~n---li~Il~dN~~~s~~t~~~~g~~~ 262 (723)
=|..-|++-|..- .+ . ....+++-||.++ .+|+++|.||++..++.+ .|+||.||+ +...|.-.++.+.
T Consensus 625 dpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT~p~~~Rss 703 (1228)
T PRK12270 625 DPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTTAPESSRSS 703 (1228)
T ss_pred chHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-cccccCccccccc
Confidence 3456688777532 22 1 2345788899995 679999999999999877 999999997 4544432221111
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 263 ~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
. | .. .+++.++...+ .|||.|++++++
T Consensus 704 ~----------------y-----------------~t-------------------d~ak~~~~Pif-hVNGdDpeAv~~ 730 (1228)
T PRK12270 704 E----------------Y-----------------AT-------------------DVAKMIQAPIF-HVNGDDPEAVVR 730 (1228)
T ss_pred h----------------h-----------------hH-------------------HHHhhcCCCEE-eECCCCHHHHHH
Confidence 0 0 01 12556677766 789999999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEeccCCCcchhh----hcccccCC------ccc---------------------------
Q 004923 343 ILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE----KAADKYHG------VAK--------------------------- 383 (723)
Q Consensus 343 al~~a~~~--~~~~P~~I~v~T~kg~G~~~~e----~~~~~~H~------~~~--------------------------- 383 (723)
+.+.|.+. ..++|++|++.|++-+|+-..+ .+|..|.- +.+
T Consensus 731 va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~ 810 (1228)
T PRK12270 731 VARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQ 810 (1228)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 88876543 3589999999999999982111 11111110 000
Q ss_pred ----ccCc--ccc------------c-c----cCc-----------------------ch---------------hhHHH
Q 004923 384 ----FDPA--TGK------------Q-F----KSS-----------------------AR---------------TQSYT 402 (723)
Q Consensus 384 ----fd~~--~g~------------~-~----~~~-----------------------~~---------------~~~~~ 402 (723)
|... ..+ + . .+. ++ ...|
T Consensus 811 Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDW- 889 (1228)
T PRK12270 811 LERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDW- 889 (1228)
T ss_pred HHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccH-
Confidence 1000 000 0 0 000 00 0001
Q ss_pred HHHHH--HHHHHHhcCCCEEEEeccCCCCcCh------------------hhhhhhCCC--ceeeccccHHHHHHHHHHH
Q 004923 403 TYFAE--ALIAEAEVDKDVVAIHAAMGGGTGL------------------NLFLRRFPT--RCFDVGIAEQHAVTFAAGL 460 (723)
Q Consensus 403 ~~~~~--aL~~~~~~d~~iv~i~aD~~gs~~l------------------~~f~~~~p~--R~id~GIaE~~~v~~AaGl 460 (723)
+|++ ++-.++.+...|...+.|...+|=. ..|... .. .++|..++|.+++|+-.|+
T Consensus 890 -a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~GFEYGY 967 (1228)
T PRK12270 890 -AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMGFEYGY 967 (1228)
T ss_pred -HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhccceee
Confidence 1222 2234555666677778886655411 112111 13 3579999999999999999
Q ss_pred HhcC--CeeEEee-hhHHH---HHHHHHHHHHhh---cCCCCEEEEeeCCCCCCCCCCCCCchhhHhh--hhcCCCcEEE
Q 004923 461 ACEG--LKPFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTF--MACLPNMVVM 529 (723)
Q Consensus 461 A~~G--~~p~~~t-~s~Fl---~ra~dqi~~~~a---~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~--~~~iP~l~V~ 529 (723)
+.+. ...+++- |.+|. |-.+|+.+...- .|+..|++..+|+ +-| .||-|+...--.| +..-.||+|.
T Consensus 968 Sv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHG-yEG-QGPdHSSaRiERfLqlcAe~nm~Va 1045 (1228)
T PRK12270 968 SVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHG-YEG-QGPDHSSARIERFLQLCAEGNMTVA 1045 (1228)
T ss_pred ecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCC-cCC-CCCCcchHHHHHHHHhhccCCeEEE
Confidence 9986 4555554 88885 788888764432 2567789888874 333 5899987543334 4455799999
Q ss_pred ccCCHHHHHHHHHH-HHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceE-Eeee-----C--CcEEEEEecchHHH
Q 004923 530 APSDEAELFHMVAT-AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIE-----G--ERVALLGYGTAVQS 600 (723)
Q Consensus 530 ~Psd~~E~~~~l~~-A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~-vl~e-----G--~dv~Iva~Gs~v~~ 600 (723)
.|++|....++++. |+....+|.+++.||..+....-- ..-..|.-|++. ||.+ + -+=+|+|+|-..+.
T Consensus 1046 ~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~--S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYd 1123 (1228)
T PRK12270 1046 QPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAV--SDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYD 1123 (1228)
T ss_pred ccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhc--CCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHH
Confidence 99999999999985 444567799999999865321100 011233445553 3322 1 14568899999887
Q ss_pred HHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC----CEEEEEcCCCC-CChHHHHHHHHHHcCCCCCCcceEEe
Q 004923 601 CLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSI-GGFGSHVVQFLAQDGLLDGTVKWRPL 675 (723)
Q Consensus 601 al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~----~~vvvvEe~~~-gG~g~~v~~~l~~~g~~~~~~~~~~~ 675 (723)
.++..+. ..--++.||.+-.+.|||.+.|++.+.++ ..+.+-||... |-|. .++-.+.+. ++...+++++
T Consensus 1124 L~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~lr~V 1198 (1228)
T PRK12270 1124 LAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRRLRRV 1198 (1228)
T ss_pred HHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCCceEe
Confidence 7655432 22346999999999999999998887654 57788888764 5554 444334332 2224556666
Q ss_pred ecCC
Q 004923 676 VLPD 679 (723)
Q Consensus 676 ~~~d 679 (723)
+=+.
T Consensus 1199 sRpa 1202 (1228)
T PRK12270 1199 SRPA 1202 (1228)
T ss_pred cCCc
Confidence 6444
No 66
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.61 E-value=8.6e-15 Score=142.96 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=108.6
Q ss_pred CCCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEE
Q 004923 135 APKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVA 214 (723)
Q Consensus 135 ~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~ 214 (723)
.++|.++.|.|+.......+... ..+ .+.....+.|++|+++|.|+|++++.+ +++|||
T Consensus 11 ~~~~~i~~d~g~~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~ 69 (168)
T cd00568 11 PEDAIVVNDAGNSAYWAYRYLPL----------------RRG-RRFLTSTGFGAMGYGLPAAIGAALAAP----DRPVVC 69 (168)
T ss_pred CCCCEEEeCCcHHHHHHHHheee----------------CCC-CcEEeCCCchhhhhhHHHHHHHHHhCC----CCcEEE
Confidence 45788999999876443222110 000 112233477999999999999999876 789999
Q ss_pred EEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhcccc
Q 004923 215 VIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQI 294 (723)
Q Consensus 215 viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~ 294 (723)
++|||+++. .+|++++|..+++|+++||.||+..+. . ......+..
T Consensus 70 ~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~--------------~-~~~~~~~~~----------------- 115 (168)
T cd00568 70 IAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT--------------I-RMHQEAFYG----------------- 115 (168)
T ss_pred EEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH--------------H-HHHHHHHcC-----------------
Confidence 999999995 779999999999999999999984221 0 000000000
Q ss_pred CCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 295 GGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 295 g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
........-..+...+++++||++. .++ +++++.++++++++ .++|++|+++|
T Consensus 116 ----------~~~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 116 ----------GRVSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred ----------CCcccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 0000011112455667999999988 454 59999999999986 68999999986
No 67
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.54 E-value=6.7e-15 Score=150.35 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=106.0
Q ss_pred CcccchhhHHHHHHHHHhhhcCCC-CeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCC-CCcCccCCCCCCCC
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPP 263 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~-~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~-~s~~t~~~~g~~~~ 263 (723)
+..+.+++|.|+|.|.|.|+..++ ..+||++|||+.+||.+|-++|+|+.++-|+||||-|||+ +|.||..+.+..
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~D-- 269 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGD-- 269 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCC--
Confidence 467788999999999999987766 7789999999999999999999999999999999999996 666665443211
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
.++.| -.+||+..| .|||+|.-+++.|
T Consensus 270 ------------------------------------GIa~k----------------G~aYGi~sI-RVDGnD~lAvYnA 296 (432)
T KOG1182|consen 270 ------------------------------------GIAVK----------------GPAYGIRSI-RVDGNDALAVYNA 296 (432)
T ss_pred ------------------------------------ceEEe----------------ccccceEEE-EecCcchHHHHHH
Confidence 11111 468999988 7899999999999
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCCCcch
Q 004923 344 LEEVKNT--KTTGPVLIHVVTEKGRGYPY 370 (723)
Q Consensus 344 l~~a~~~--~~~~P~~I~v~T~kg~G~~~ 370 (723)
.+.|+++ ..++|++||+.|++--.++.
T Consensus 297 ~k~ARe~av~e~rPvliEamtYRvGHHST 325 (432)
T KOG1182|consen 297 VKEAREMAVTEQRPVLIEAMTYRVGHHST 325 (432)
T ss_pred HHHHHHHHHhccCchhhhhhhhhhccccC
Confidence 9988754 35799999999997444443
No 68
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.53 E-value=7.2e-14 Score=147.55 Aligned_cols=217 Identities=25% Similarity=0.357 Sum_probs=126.7
Q ss_pred CCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCC--CCcEEEeCCCchH--
Q 004923 73 PTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNA--PKDRILWDVGHQT-- 148 (723)
Q Consensus 73 ~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~--p~D~~i~s~GH~~-- 148 (723)
.-|||.+...|+|+|.--+ ||+|+|.|..-+++.|.++.+. -+-.+|...||.+
T Consensus 29 dNpLL~~pL~~ediKprll----------------------GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pa 86 (379)
T PF09364_consen 29 DNPLLREPLKPEDIKPRLL----------------------GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPA 86 (379)
T ss_dssp S-TT--SS--GGGB-SS------------------------S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHH
T ss_pred hCcCcCCCCCHHHCCcccc----------------------cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchh
Confidence 3588999999999998555 9999999999999999876542 2345688999998
Q ss_pred -HHHHHHcCC-----------hhHhHHH-Hhc---CCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeE
Q 004923 149 -YPHKILTGR-----------RDKMHTM-RQT---DGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNV 212 (723)
Q Consensus 149 -y~~~~l~G~-----------~~~l~~~-r~~---~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~v 212 (723)
.+..+|.|. .+-|..| ||+ ||+.+|..+ ++++...-.|-+|++++.|.|+++- ++|-.|
T Consensus 87 i~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipSH~~p-~tPGsIhEGGELGYaLshA~GA~~D----nPdliv 161 (379)
T PF09364_consen 87 ILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPSHVSP-ETPGSIHEGGELGYALSHAFGAVFD----NPDLIV 161 (379)
T ss_dssp HHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-SSS-T-TSTT-S---SSTS-HHHHHHHHHTT-----TT-EE
T ss_pred hhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCccccCc-CCCCccCcCcchhhHHHHHhhcccC----CCCeEE
Confidence 666788883 2334433 555 567777665 4666555679999999999999864 469999
Q ss_pred EEEEcCCcccccchHHHHHHhhhcC----CCEEEEEECCCC-CCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 004923 213 VAVIGDGAMTAGQAYEAMNNAGYLD----SDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (723)
Q Consensus 213 v~viGDGa~~~G~~~EAln~A~~~~----~nli~Il~dN~~-~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~ 287 (723)
+||+||||..+|..--+.....+++ ..|+-|+.-|++ ++-||- + ++.
T Consensus 162 ~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTi-----------l----~r~------------- 213 (379)
T PF09364_consen 162 ACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPTI-----------L----ARM------------- 213 (379)
T ss_dssp EEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-H-----------H----HHS-------------
T ss_pred EEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccCCeE-----------e----eec-------------
Confidence 9999999999996433333334443 579999999995 443331 1 110
Q ss_pred hhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH--------HHhhhc--------C
Q 004923 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL--------EEVKNT--------K 351 (723)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al--------~~a~~~--------~ 351 (723)
.-+++. .+|+.+||..+ .|+|+|.+++...+ +++++. .
T Consensus 214 ---------~~~eL~----------------~lf~G~Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~ 267 (379)
T PF09364_consen 214 ---------SDEELE----------------ALFRGYGYEPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNP 267 (379)
T ss_dssp ----------HHHHH----------------HHHHHTTEEEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred ---------CHHHHH----------------HHHHhCCCeEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 012333 34999999987 78999986654332 222211 1
Q ss_pred CCCc--EEEEEEeccCCCcch
Q 004923 352 TTGP--VLIHVVTEKGRGYPY 370 (723)
Q Consensus 352 ~~~P--~~I~v~T~kg~G~~~ 370 (723)
..+| -+|+++|.||++.|.
T Consensus 268 ~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 268 AYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp S----EEEEEEE--TTTTS-S
T ss_pred CCCCCCcEEEEECCcccCCcc
Confidence 2234 489999999999774
No 69
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.50 E-value=5.5e-13 Score=134.23 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 51 ~~g~mG~~lpaaiGa~la~p----~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~y-------------- 110 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP----DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQW-------------- 110 (196)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 56899999999999999864 88999999999999 45677999999999999999888732
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHH-hhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~-~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+. ..++.. |. ..+ ..++-.+|+..++++||+++... ++.++|..+
T Consensus 111 g~~~-~~q~~~----~~------------------------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 158 (196)
T cd02013 111 GAEK-KNQVDF----YN------------------------NRFVGTELESESFAKIAEACGAKGITV---DKPEDVGPA 158 (196)
T ss_pred HHHH-HHHHHH----cC------------------------CCcccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 1111 000000 00 000 01112367788899999998844 579999999
Q ss_pred HHHhhh-cCCCCcEEEEEEeccCCC
Q 004923 344 LEEVKN-TKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 344 l~~a~~-~~~~~P~~I~v~T~kg~G 367 (723)
++++.+ ...++|++|++.+.+..+
T Consensus 159 l~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 159 LQKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHHhcCCCCCeEEEEEEeCcccC
Confidence 998864 113789999999986664
No 70
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.49 E-value=1e-13 Score=136.52 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=90.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +.+++|++|+.+++|+++||.||+.+.+....+
T Consensus 46 ~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~------- 112 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ------- 112 (172)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhh-------
Confidence 45889999999999999875 88999999999999 567889999999999888887776322211000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.. |. ........+..+++..++++||+.+. .|+ +.++|.+++
T Consensus 113 --------~~~----~~----------------------~~~~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 155 (172)
T cd02004 113 --------QLS----YG----------------------LGLPVTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPAL 155 (172)
T ss_pred --------hhh----cc----------------------CCCceeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 000 00 00000011123456778999999987 454 699999999
Q ss_pred HHhhhcCCCCcEEEEEEe
Q 004923 345 EEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T 362 (723)
+++.+ .++|++|++++
T Consensus 156 ~~a~~--~~~p~liev~i 171 (172)
T cd02004 156 KRALA--SGKPALINVII 171 (172)
T ss_pred HHHHH--cCCCEEEEEEc
Confidence 99986 57999999986
No 71
>PRK06163 hypothetical protein; Provisional
Probab=99.49 E-value=5e-13 Score=134.73 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=92.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhc-CCCEEEEEECCCCCCcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~-~~nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
+.|.+|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|..+ +.|+++||.||+.+.+. +...
T Consensus 55 ~~GsMG~glpaAiGaalA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~-----~~~~- 122 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQP----KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT-----GGQP- 122 (202)
T ss_pred eecccccHHHHHHHHHHhCC----CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc-----CCcc-
Confidence 46889999999999999874 88999999999998 666789999876 58999999999742210 0000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCe-EEEecCCCCHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNVDDLVA 342 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~-~~~~vDGhd~~~l~~ 342 (723)
.. ..-.+|+.+++++||+. .... .+.++|..
T Consensus 123 ~~---------------------------------------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~ 154 (202)
T PRK06163 123 TL---------------------------------------------TSQTVDVVAIARGAGLENSHWA---ADEAHFEA 154 (202)
T ss_pred CC---------------------------------------------CCCCCCHHHHHHHCCCceEEEe---CCHHHHHH
Confidence 00 00124566779999997 4433 68999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCCcc
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGRGYP 369 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~G~~ 369 (723)
+++++.+ .++|++|+|.+......+
T Consensus 155 al~~a~~--~~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 155 LVDQALS--GPGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHHh--CCCCEEEEEEecCCCCCC
Confidence 9999986 589999999998765444
No 72
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.48 E-value=2.3e-13 Score=135.92 Aligned_cols=121 Identities=26% Similarity=0.356 Sum_probs=93.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
..|++|+++|+|+|+++|.+ +++|||++|||+++ +..++|.+|+.+++ |+++||.||+.+.+. +....
T Consensus 46 ~~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~-----~~~~~ 114 (188)
T cd03371 46 TVGSMGHASQIALGIALARP----DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSV-----GGQPT 114 (188)
T ss_pred ecCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhcc-----CCcCC
Confidence 45999999999999999975 78999999999998 56688999999885 788888888742210 00000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
. ...+++..++++||+.+...| ++.++|.++
T Consensus 115 ~-----------------------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 115 V-----------------------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred C-----------------------------------------------CCCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 0 001345566999999874355 489999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
++++.+ .++|++|++.|.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999876 5799999999998876
No 73
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.47 E-value=3.4e-13 Score=133.70 Aligned_cols=127 Identities=23% Similarity=0.301 Sum_probs=94.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccch-HHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~-~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
+.|.+|+++|+|+|+++|.+ +++||+++|||+++ +. ++++.+|.++++|+++||.||+.+..- +....
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~-----~~~~~ 117 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMT-----GGQPH 117 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceecc-----CCCCC
Confidence 46899999999999999986 78999999999997 33 788999999999999998888742210 00000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
.. . .+ ........+|+.+++++|||+++.+.++++++++.++
T Consensus 118 ~~-----------~-~~--------------------------~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 118 PG-----------T-GK--------------------------TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred CC-----------C-cc--------------------------cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 00 0 00 0000011245667799999999977799999999999
Q ss_pred HHHhhhcCCCCcEEEEEEe
Q 004923 344 LEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T 362 (723)
++++.+ .++|++|+++.
T Consensus 160 l~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 160 LKEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHHh--CCCCEEEEEeC
Confidence 999876 57999999975
No 74
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.45 E-value=1.7e-12 Score=128.82 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=89.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
+.|++|+++|+|+|+|+|.+ ++|||++|||+++ +...++.+|..++ .|+++||.||+..++- +....
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~-----~~~~~ 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGST-----GNQPT 107 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCcccccc-----CCCCC
Confidence 36999999999999999964 7899999999998 4456799998888 5788887777633321 00000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
. . ...+++..++++||+.+. .++| +.+++.++
T Consensus 108 ~--~--------------------------------------------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~a 139 (179)
T cd03372 108 H--A--------------------------------------------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEKA 139 (179)
T ss_pred C--C--------------------------------------------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHHH
Confidence 0 0 002345566899999987 5665 89999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
+++++ ++|++|++.|.++.+
T Consensus 140 l~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 140 VEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHhc----CCCEEEEEEEcCCCC
Confidence 99886 589999999988776
No 75
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.45 E-value=1.3e-12 Score=126.77 Aligned_cols=116 Identities=24% Similarity=0.341 Sum_probs=88.7
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhc-CCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~-~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
.|++|+++|+|+|+++|.+ ++|||++|||+++ |...++.+++.+ +.|+++||.||+.+..- +....
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~-----~~~~~- 107 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST-----GGQPT- 107 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc-----CCcCC-
Confidence 6899999999999999863 7899999999998 445679999888 49999999888632210 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
....+++..++++||+.++.. ++.++|.+++
T Consensus 108 ----------------------------------------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 138 (157)
T cd02001 108 ----------------------------------------------PSSNVNLEAWAAACGYLVLSA---PLLGGLGSEF 138 (157)
T ss_pred ----------------------------------------------CCCCCCHHHHHHHCCCceEEc---CCHHHHHHHH
Confidence 000245566799999998744 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+ .++|++|++.+.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99986 57999999998764
No 76
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.45 E-value=1.5e-11 Score=151.83 Aligned_cols=247 Identities=16% Similarity=0.124 Sum_probs=171.4
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhhhhcCCC
Q 004923 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMACLPN 525 (723)
Q Consensus 447 GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~~~~iP~ 525 (723)
.=+|+++++++.|++.+|.+.++.|.++.+..+.+.+. .++..++|+++.. .|+|. +..+..+.+..|+...|. -|
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~-~~ag~~~P~Vi~va~R~~~-~~~~~i~~dh~Dv~~~R~-~G 133 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMY-KIAGELLPCVFHVSARAIA-AHALSIFGDHQDVMAARQ-TG 133 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHH-HHHhccCCEEEEEecCCCC-CCCCccCCCchHHHHhhc-CC
Confidence 35899999999999999999999999888888888764 4566699988877 45553 222455666667766666 58
Q ss_pred cEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC----CccccCCCC-----------CCC---------CCcc--
Q 004923 526 MVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN----GIGVELPPG-----------NKG---------IPLE-- 576 (723)
Q Consensus 526 l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~----~~~~~~p~~-----------~~~---------~~~~-- 576 (723)
+.+++|++.+|+.++...|++. ...|+++.++... ...+.+++. ... .+..
T Consensus 134 ~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G 213 (1165)
T TIGR02176 134 FAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRG 213 (1165)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeC
Confidence 9999999999999999988863 5679998776421 111111100 000 0000
Q ss_pred ------------------------------------cCceE-----EeeeCCcEEEEEecchHHHHHHHHHHHHhCCCce
Q 004923 577 ------------------------------------VGKGR-----ILIEGERVALLGYGTAVQSCLAASALLESNGLRL 615 (723)
Q Consensus 577 ------------------------------------~gk~~-----vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v 615 (723)
.|+-+ .-.++++++||++|+....+.+|++.|+++|++|
T Consensus 214 ~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kV 293 (1165)
T TIGR02176 214 TAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKV 293 (1165)
T ss_pred CCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence 01100 1114579999999999999999999999999999
Q ss_pred EEeecCccccccHHHHHHHh-cCCCEEEEEcCCCC-C----ChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHH
Q 004923 616 TVADARFCKPLDHALIRSLA-KSHEVLITVEEGSI-G----GFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPAD 689 (723)
Q Consensus 616 ~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~-g----G~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~e 689 (723)
++|.++.++|||.+.+.+.+ ++.+.|+|+|.+.. | -+..+|...+...+ . ..+. .++ -.|+..|.
T Consensus 294 Gli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~~-v~~--~~~Glgg~--- 364 (1165)
T TIGR02176 294 GLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMPV-ILG--GRYGLGSK--- 364 (1165)
T ss_pred eEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCCE-EEE--EEECCCCC---
Confidence 99999999999999998877 68899999999852 3 25566666664321 0 1111 111 22332221
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 004923 690 QLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 690 l~~~~gl~~e~I~~~i~~ll~ 710 (723)
.++++.|.+.+.++..
T Consensus 365 -----~~tp~~i~~i~~~l~~ 380 (1165)
T TIGR02176 365 -----EFTPAMVKAVFDNLSG 380 (1165)
T ss_pred -----CCCHHHHHHHHHHHhc
Confidence 2788888888877654
No 77
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.44 E-value=8.9e-12 Score=136.49 Aligned_cols=205 Identities=17% Similarity=0.184 Sum_probs=146.1
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhhhhcCCC
Q 004923 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMACLPN 525 (723)
Q Consensus 447 GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~~~~iP~ 525 (723)
-=+|+++++++.|++++|.|.+++|.++.+..+.+.+ ..++++++|++++. .|+|. ...-||+....|+.+.|.- +
T Consensus 53 ~EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D~~~~r~~-g 129 (365)
T COG0674 53 MESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLP-STGLPIKGDQSDLMAARDT-G 129 (365)
T ss_pred eccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcC-CCcccccccHHHHHHHHcc-C
Confidence 3689999999999999999999999999888888865 57899999988887 55553 3333699999999888874 8
Q ss_pred cEEEccCCHHHHHHHHHHHHHhCC---CCEEEEecCCCC----ccccCCC---------CCCCC-------CcccC----
Q 004923 526 MVVMAPSDEAELFHMVATAAAIDD---RPSCFRYPRGNG----IGVELPP---------GNKGI-------PLEVG---- 578 (723)
Q Consensus 526 l~V~~Psd~~E~~~~l~~A~~~~~---~P~~ir~~r~~~----~~~~~p~---------~~~~~-------~~~~g---- 578 (723)
+.+++-+|.+|+.++...|++..+ -|+++.++.... ..+.++. .++.+ +...|
T Consensus 130 ~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (365)
T COG0674 130 FPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAV 209 (365)
T ss_pred ceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCC
Confidence 888888899999999999988544 488876543210 0000000 00000 00001
Q ss_pred ----------------------------------c----eEEee-eCCcEEEEEecchHHHHHHHHHH-HHhCCCceEEe
Q 004923 579 ----------------------------------K----GRILI-EGERVALLGYGTAVQSCLAASAL-LESNGLRLTVA 618 (723)
Q Consensus 579 ----------------------------------k----~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~-L~~~Gi~v~VI 618 (723)
+ +.+.. ++++++||+||+....+.+|+.. ++++|++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l 289 (365)
T COG0674 210 PDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLL 289 (365)
T ss_pred CceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEE
Confidence 0 00000 46789999999888777776655 55889999999
Q ss_pred ecCccccccHHHHHHHhcCCC--EEEEEcCCCCCChHHH
Q 004923 619 DARFCKPLDHALIRSLAKSHE--VLITVEEGSIGGFGSH 655 (723)
Q Consensus 619 d~~~ikP~d~~~i~~~~~~~~--~vvvvEe~~~gG~g~~ 655 (723)
.+|+++|||.+.+++++++.+ .|+.+|-+ .|+++..
T Consensus 290 ~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~-~g~~~~~ 327 (365)
T COG0674 290 KVRTLRPFPAEEIREVLPKTNAVVVLDVEIS-LGGLAEP 327 (365)
T ss_pred EEEEeCCCCHHHHHHHhcccceeEEEEEccC-Cccchhh
Confidence 999999999999999998877 45555544 3554433
No 78
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.44 E-value=6.3e-13 Score=132.68 Aligned_cols=128 Identities=21% Similarity=0.371 Sum_probs=94.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|..+++|+++||.||+.+.
T Consensus 48 ~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------- 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------- 108 (186)
T ss_pred CccchhchHHHHHHHHHhCC----CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 55889999999999999864 78999999999999 566779999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
.+. .+++.... +.+. ..+ -.+|+..++++||+++. .| ++.++|.+
T Consensus 109 -~~~-~~~~~~~~----------------------------~~~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~ 155 (186)
T cd02015 109 -MVR-QWQELFYE----------------------------GRYSHTTLDSNPDFVKLAEAYGIKGL-RV--EKPEELEA 155 (186)
T ss_pred -HHH-HHHHHHcC----------------------------CceeeccCCCCCCHHHHHHHCCCceE-Ee--CCHHHHHH
Confidence 110 00000000 0000 011 12566778999999988 44 46899999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++++.+ .++|++|+|.|.+..
T Consensus 156 al~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCc
Confidence 9999986 589999999997644
No 79
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.41 E-value=2.6e-12 Score=127.24 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=94.2
Q ss_pred cCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCC
Q 004923 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (723)
Q Consensus 184 ~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~ 263 (723)
.+.|.+|+++|+|+|+++|.. +++|||++|||+++ +....|.+|.++++|+++||.||+.+
T Consensus 45 ~~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~------------- 105 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVYP----DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGY------------- 105 (177)
T ss_pred CCChhhhhHHHHHHHHHHhCC----CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcc-------------
Confidence 367899999999999999865 88999999999998 66677999999999999998888731
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+ +..++.... +....++-.+|+.++.++||+.+... .+.++|.++
T Consensus 106 -g~~-~~~~~~~~~----------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 152 (177)
T cd02010 106 -GLI-KWKQEKEYG----------------------------RDSGVDFGNPDFVKYAESFGAKGYRI---ESADDLLPV 152 (177)
T ss_pred -hHH-HHHHHHhcC----------------------------CcccCcCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 211 111100000 00001111356778899999998744 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEecc
Q 004923 344 LEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~k 364 (723)
++++.+ .++|++|++.+..
T Consensus 153 l~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 153 LERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHh--CCCCEEEEEEecc
Confidence 999986 5899999999864
No 80
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.41 E-value=2.1e-12 Score=130.93 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=95.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.+ ..+|.+|.++++|+++||.||+.+
T Consensus 46 ~~gsmG~~lpaAiGa~la~p----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~-------------- 105 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP----DREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGF-------------- 105 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC----CCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCcc--------------
Confidence 66999999999999999864 8899999999999964 457999999999998888888732
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHH--HHhh-cccCCCccchhhccCCeEEEecCCCCHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD--EYAR-GMISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~--~~~~-~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~ 341 (723)
+.+. .+++....+.|. . ....+.. .... ..-.+|+..++++||+.+... ++.++|.
T Consensus 106 g~~~-~~q~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~ 164 (205)
T cd02003 106 GCIN-NLQESTGSGSFG--------------T---EFRDRDQESGQLDGALLPVDFAANARSLGARVEKV---KTIEELK 164 (205)
T ss_pred HHHH-HHHHHhcCcccc--------------c---hhcccccccccccCCCCCCCHHHHHHhCCCEEEEE---CCHHHHH
Confidence 1111 111100000000 0 0000000 0000 011357788899999998754 7899999
Q ss_pred HHHHHhhhcCCCCcEEEEEEeccCCC
Q 004923 342 AILEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 342 ~al~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
++++++.+ .++|++|+|.|.+...
T Consensus 165 ~al~~a~~--~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 165 AALAKAKA--SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHHh--CCCCEEEEEEeecccc
Confidence 99999986 5899999999987554
No 81
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.39 E-value=2.3e-12 Score=130.39 Aligned_cols=140 Identities=21% Similarity=0.221 Sum_probs=95.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 55 ~~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y-------------- 114 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL-------------- 114 (202)
T ss_pred CccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------
Confidence 56899999999999999875 88999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhh-cccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR-GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~-~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+. ..++......+. ........... ..-.+|+.+++++||+.+... .+.++|.++
T Consensus 115 g~~~-~~q~~~~~~~~~------------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 172 (202)
T cd02006 115 GLIR-QAQRAFDMDYQV------------------NLAFENINSSELGGYGVDHVKVAEGLGCKAIRV---TKPEELAAA 172 (202)
T ss_pred HHHH-HHHHHhcCcccc------------------ccccccccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 2221 101000000000 00000000000 001367788999999998754 689999999
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCC
Q 004923 344 LEEVKNT--KTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~--~~~~P~~I~v~T~kg~ 366 (723)
|+++.+. ..++|++|+|.+.+..
T Consensus 173 l~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 173 FEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHHhcccCCCcEEEEEEecccc
Confidence 9998741 1478999999987654
No 82
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.38 E-value=4.2e-12 Score=125.67 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=90.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+ |.+|+++|+|+|+++|.+ +++|||++|||+++.+. +++++|..++.|+++||.||+.+.+
T Consensus 48 ~-g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~------------ 108 (178)
T cd02002 48 G-GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGA------------ 108 (178)
T ss_pred C-ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHH------------
Confidence 6 999999999999999875 78999999999999664 6899999999999999999973221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhc--ccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG--MISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~--~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
. +.+++...... ..+ .+....+ .-.+++.+++++||+.+. .++ +.+++.+
T Consensus 109 --~-~~~~~~~~~~~----------~~~------------~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 160 (178)
T cd02002 109 --L-RSFLKRVGPEG----------PGE------------NAPDGLDLLDPGIDFAAIAKAFGVEAE-RVE--TPEELDE 160 (178)
T ss_pred --H-HHHHHHHcCCC----------ccc------------ccccccccCCCCCCHHHHHHHcCCceE-EeC--CHHHHHH
Confidence 1 00000000000 000 0000000 012456677999999987 454 4999999
Q ss_pred HHHHhhhcCCCCcEEEEEEe
Q 004923 343 ILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T 362 (723)
+++++.+ .++|++|++++
T Consensus 161 al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 161 ALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHh--CCCCEEEEEEC
Confidence 9999986 57999999874
No 83
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.36 E-value=4.5e-12 Score=125.89 Aligned_cols=118 Identities=21% Similarity=0.356 Sum_probs=88.8
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
.|++|+++|+|+|+++|. +++|||++|||+++.+ .+++.+|+.++ .|+++||.||+.+..- +... .
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~-----~~q~-~ 107 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGST-----GNQP-T 107 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccc-----cCcC-C
Confidence 689999999999999985 6789999999999954 47799999888 5999999999742210 0000 0
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
. ..-.+++.+++++||+.+...| ++.++|.++|
T Consensus 108 ----------------------------------~-----------~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al 140 (181)
T TIGR03846 108 ----------------------------------P-----------ASRRTDLELVAKAAGIRNVEKV--ADEEELRDAL 140 (181)
T ss_pred ----------------------------------C-----------CCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHH
Confidence 0 0002455667999999987523 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+ +.+ .++|++|++.+.++.
T Consensus 141 ~-a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 141 K-ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred H-HHc--CCCCEEEEEEeCCCC
Confidence 7 655 579999999987654
No 84
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.35 E-value=4.6e-12 Score=125.60 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=91.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++.+ ..| +.+|..++.|+++||.||+.+.
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~----~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~------------- 109 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP----DRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLG------------- 109 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchh-------------
Confidence 55899999999999998864 7899999999999977 445 8889999999999999997321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+ +...+....+ .+..++-.+++.+++++||+++.. + .+.+++.+++
T Consensus 110 -~~-~~~~~~~~~~----------------------------~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~~l 156 (178)
T cd02014 110 -FI-KWEQEVMGQP----------------------------EFGVDLPNPDFAKIAEAMGIKGIR-V--EDPDELEAAL 156 (178)
T ss_pred -HH-HHHHHHhcCC----------------------------ceeccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 11 0000000000 000111124566779999999874 4 4789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+ .++|++|++.|.+.
T Consensus 157 ~~a~~--~~~p~liev~~~~~ 175 (178)
T cd02014 157 DEALA--ADGPVVIDVVTDPN 175 (178)
T ss_pred HHHHh--CCCCEEEEEEeCCC
Confidence 99886 57999999998643
No 85
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.34 E-value=1.5e-11 Score=122.56 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=88.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++.. .+| +.+|..++.|+++||.||+.+.+....+ +...
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~-~~~~-- 118 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIH-GPEA-- 118 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEec-cCCc--
Confidence 56899999999999999875 7899999999999753 455 7789988888777777776422210000 0000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccC----CeEEEecCCCCHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG----LYYIGPVDGHNVDDL 340 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G----~~~~~~vDGhd~~~l 340 (723)
.+ .++..+++.+++++|| +.+... ++.+++
T Consensus 119 --------------~~-----------------------------~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el 152 (183)
T cd02005 119 --------------SY-----------------------------NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGEL 152 (183)
T ss_pred --------------Cc-----------------------------ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHH
Confidence 00 0111245667799999 566644 789999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccC
Q 004923 341 VAILEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 341 ~~al~~a~~~~~~~P~~I~v~T~kg 365 (723)
.++++++.+ ..++|++||+.|.+.
T Consensus 153 ~~al~~a~~-~~~~p~liev~~~~~ 176 (183)
T cd02005 153 DEALKDALF-NRDKLSLIEVILPKD 176 (183)
T ss_pred HHHHHHHHh-cCCCcEEEEEEcCcc
Confidence 999999875 147999999998653
No 86
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.34 E-value=1.8e-12 Score=125.12 Aligned_cols=130 Identities=19% Similarity=0.268 Sum_probs=92.6
Q ss_pred ccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 004923 183 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (723)
Q Consensus 183 ~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~ 262 (723)
..+.|.+|+++|+|+|+++|++ +++|||++|||++... ..+|.+|.+++.|+++||.||+.+.
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a~p----~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~----------- 86 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALARP----DRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYG----------- 86 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSH-----------
T ss_pred CCCccccCCHHHhhhHHHhhcC----cceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcce-----------
Confidence 3477999999999999999854 8999999999999944 5679999999999999999997421
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 263 ~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
... ..+.......+ .....+.+-..++..+++++|+++. .|+-.|.++|.+
T Consensus 87 ---~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~ 137 (153)
T PF02775_consen 87 ---MTG-GQQTPFGGGRF------------------------SGVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEE 137 (153)
T ss_dssp ---HHH-HHHHHTTSTCH------------------------HSTBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHH
T ss_pred ---Eec-cccccCcCccc------------------------ccccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHH
Confidence 110 00000000000 0000001234567788999999977 666667799999
Q ss_pred HHHHhhhcCCCCcEEEEE
Q 004923 343 ILEEVKNTKTTGPVLIHV 360 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v 360 (723)
+++++.+ .++|++|||
T Consensus 138 al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 138 ALREALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHHHH--SSSEEEEEE
T ss_pred HHHHHHh--CCCcEEEEc
Confidence 9999996 689999997
No 87
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.33 E-value=2.6e-12 Score=127.01 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=91.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
|.|.+|+++|+|+|+++|. +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.+-.
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~---------- 111 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFS---------- 111 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchhe----------
Confidence 5688999999999999985 68899999999999 556789999999999999999997422100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+........| .. ..... ..+|+.+++++||+.+... ++.++|.++|
T Consensus 112 -----~~~~~~~~~~~---------------------~~---~~~~~-~~~d~~~lA~a~G~~~~~v---~~~~el~~al 158 (175)
T cd02009 112 -----LLPQASFEDEF---------------------ER---LFGTP-QGLDFEHLAKAYGLEYRRV---SSLDELEQAL 158 (175)
T ss_pred -----eccCCcccchh---------------------hh---hhcCC-CCCCHHHHHHHcCCCeeeC---CCHHHHHHHH
Confidence 00000000000 00 00000 1357778899999998754 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 004923 345 EEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~ 363 (723)
+++.+ .++|++|++.+.
T Consensus 159 ~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 159 ESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99986 589999999863
No 88
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.29 E-value=1.9e-11 Score=133.69 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=114.5
Q ss_pred ccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHH
Q 004923 120 LGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGM 199 (723)
Q Consensus 120 lg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~ 199 (723)
++-.+.+-.+...+ .++|.+|.++|-.+. ++..+| ...+.+|+.. .+..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~----------el~~~~-~~~~~~~~~~------f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSR----------ELYELR-DRIGQGHARD------FLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcH----------HHHHhh-cccccCCCCc------eEeechhhhHHHHHHHH
Confidence 55555554443333 356888888884332 122332 1223455532 23459999999999999
Q ss_pred HHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcCh
Q 004923 200 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (723)
Q Consensus 200 A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~ 278 (723)
|+|.+ +++|||+.|||++. |...+|.+++.++ .|+++||.||+.... .+.....+
T Consensus 234 ala~p----~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-----~g~q~~~~------------- 289 (361)
T TIGR03297 234 ALARP----DQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-----VGGQPTVS------------- 289 (361)
T ss_pred HHHCC----CCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-----cCCcCCCC-------------
Confidence 99875 78999999999998 6667899999888 599999999984211 11111000
Q ss_pred hhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEE
Q 004923 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 358 (723)
Q Consensus 279 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I 358 (723)
...++.+++++|||... +..++.++|.++++++.+ .++|++|
T Consensus 290 ----------------------------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~--~~gp~lI 331 (361)
T TIGR03297 290 ----------------------------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASS--ANGPRLI 331 (361)
T ss_pred ----------------------------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 01344556899998432 233899999999999986 5799999
Q ss_pred EEEeccCCC
Q 004923 359 HVVTEKGRG 367 (723)
Q Consensus 359 ~v~T~kg~G 367 (723)
++++.+|.+
T Consensus 332 eV~v~~g~~ 340 (361)
T TIGR03297 332 EVKVRPGSR 340 (361)
T ss_pred EEEecCCCc
Confidence 999998764
No 89
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.2e-10 Score=122.79 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChh------------------hhhhhCCC--ceeeccccHHHHHHHHHH
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN------------------LFLRRFPT--RCFDVGIAEQHAVTFAAG 459 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~------------------~f~~~~p~--R~id~GIaE~~~v~~AaG 459 (723)
.|..+-+-++-.++-+.-+|.+-+.|+|.++--. .+.....+ -+-|..++|.+..|+-.|
T Consensus 565 DWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyG 644 (913)
T KOG0451|consen 565 DWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYG 644 (913)
T ss_pred chHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcc
Confidence 3555555567778888889999999999776210 00000011 245788999999999999
Q ss_pred HHhcC--CeeEEee-hhHHHHHHHHHHHHHhh--------cCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhc------
Q 004923 460 LACEG--LKPFCAI-YSSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC------ 522 (723)
Q Consensus 460 lA~~G--~~p~~~t-~s~Fl~ra~dqi~~~~a--------~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~------ 522 (723)
|+.+. ..++++. |.+|..-| ||+.|-- +...-+++..+| |+-| -||-|+.+.--.|+.-
T Consensus 645 msienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~E~ 720 (913)
T KOG0451|consen 645 MSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSKET 720 (913)
T ss_pred cccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhccccc
Confidence 99985 5677776 88987544 4443321 122345555555 4444 3788987655455442
Q ss_pred -----CCCcEEEccCCHHHHHHHHHHHHH-hCCCCEEEEecCCCCccccCCCC-------CCCCCc--ccCceEEeeeCC
Q 004923 523 -----LPNMVVMAPSDEAELFHMVATAAA-IDDRPSCFRYPRGNGIGVELPPG-------NKGIPL--EVGKGRILIEGE 587 (723)
Q Consensus 523 -----iP~l~V~~Psd~~E~~~~l~~A~~-~~~~P~~ir~~r~~~~~~~~p~~-------~~~~~~--~~gk~~vl~eG~ 587 (723)
--||.|+-|.++.+.+.+++.-+. ...+|.++.-|+-.+. +|.. .++..+ .+|.-..-.+.-
T Consensus 721 ~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~kv 797 (913)
T KOG0451|consen 721 SVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPEKV 797 (913)
T ss_pred cCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChhHh
Confidence 236899999999999999986654 4678999887774321 2210 011111 122211111122
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC----CEEEEEcCCC-CCChH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGS-IGGFG 653 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~----~~vvvvEe~~-~gG~g 653 (723)
+-+|+++|--.....++.+.+..+. .+.++.+-.+=|||.+.+...++++ ..|..-||.. .|-|.
T Consensus 798 kkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 798 KKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred eEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 5678899998887777766553322 3789999999999999998887765 4778889987 46553
No 90
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.27 E-value=6.3e-11 Score=138.38 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=94.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
|.|++|+++|+|+|+++|.+ +++|||++|||+++ +.+++|++|..+++|+++||.||+.+..-...++ ...
T Consensus 435 g~gsmG~~l~~aiGa~la~~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~---~~~ 505 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVARP----GAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAET---VKF 505 (578)
T ss_pred CccccccHHHHHHHHHhhCC----CCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccc---ccc
Confidence 56899999999999998864 78999999999998 7789999999999999999999973211000000 000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+ .. ....++-..++.+++++||+.+... ++.++|.+++
T Consensus 506 ~------------------------------~~---------~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al 543 (578)
T PRK06112 506 G------------------------------TH---------TDACHFAAVDHAAIARACGCDGVRV---EDPAELAQAL 543 (578)
T ss_pred C------------------------------Cc---------cccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 0 00 0000111245667899999998744 6799999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|||++.+..
T Consensus 544 ~~a~~--~~gp~lIev~~~~~~ 563 (578)
T PRK06112 544 AAAMA--APGPTLIEVITDPSA 563 (578)
T ss_pred HHHHh--CCCCEEEEEEcCccc
Confidence 99986 579999999997643
No 91
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.26 E-value=1.4e-11 Score=141.78 Aligned_cols=128 Identities=24% Similarity=0.295 Sum_probs=98.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.||.++|+|+|+++|.. ++.|||++|||+++ |..+.|.+|..+++|+++||.||+.+
T Consensus 406 ~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~-------------- 465 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGY-------------- 465 (550)
T ss_pred CCccccchHHHHHHHHhhCC----CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcc--------------
Confidence 67999999999999999876 89999999999999 77888999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
|.+ |.+. +.......+..++.++.+.+++|+||+..... .+.++|.++|
T Consensus 466 g~v----------------~~~q------------~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al 514 (550)
T COG0028 466 GMV----------------RQWQ------------ELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEAL 514 (550)
T ss_pred ccc----------------hHHH------------HHhcCCCcceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHH
Confidence 222 1111 00000001122333322678899999998854 5999999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+ .++|++|++.+.+.
T Consensus 515 ~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 515 EEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHh--CCCCEEEEEEecCc
Confidence 99997 68999999999876
No 92
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.24 E-value=1e-10 Score=112.54 Aligned_cols=125 Identities=26% Similarity=0.306 Sum_probs=100.3
Q ss_pred hhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee-hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC
Q 004923 432 LNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT 510 (723)
Q Consensus 432 l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t-~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~t 510 (723)
+-....+.+++.+..++.|++++++|.|++..|.+|++.+ +.+|+.++++++. .+...++||+++....+..+.++.+
T Consensus 26 l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 26 LLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred HHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccCc
Confidence 4333345689999999999999999999999977888876 5999999999987 7788999999998666654555778
Q ss_pred CCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004923 511 HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 558 (723)
Q Consensus 511 H~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r 558 (723)
||..++..+++.+|++.+..|++.++. ..+..|+. ...+|++|++|+
T Consensus 105 ~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMFDLGMYRSIPEANISSPSPAELP-AGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccCHHHHHHHhhheEEEeCCHHHHH-HHHHHHHHHHhcCCCCEEEEccC
Confidence 999999999999999988887775544 44444444 246799998764
No 93
>PRK08322 acetolactate synthase; Reviewed
Probab=99.23 E-value=2.9e-10 Score=131.98 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=97.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.. +++|||++|||+++ +...+|.+|..+++|+++||.||+.+
T Consensus 404 ~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~-------------- 463 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVHP----DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAY-------------- 463 (547)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCc--------------
Confidence 66899999999999999864 78999999999999 55677999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+. ..++.. | .+.+..++-.+|+..++++||+++... ++.++|.+++
T Consensus 464 g~~~-~~~~~~----~------------------------~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 511 (547)
T PRK08322 464 GMIR-WKQENM----G------------------------FEDFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLPTL 511 (547)
T ss_pred chHH-HHHHhh----c------------------------CCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 1111 000000 0 000011222367788999999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCc
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRGY 368 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G~ 368 (723)
+++.+ .++|++|+|.+.+....
T Consensus 512 ~~a~~--~~~p~lIev~v~~~~~~ 533 (547)
T PRK08322 512 EEALA--QPGVHVIDCPVDYSEND 533 (547)
T ss_pred HHHHh--CCCCEEEEEEecCccCc
Confidence 99876 57999999999765543
No 94
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.23 E-value=3.8e-11 Score=120.55 Aligned_cols=134 Identities=17% Similarity=0.228 Sum_probs=90.6
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa-~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
|.+|+++|+|+|+++|.. +++||+++|||+ ++ +...++.+|.+++.|+++||.||+.+..-...+. .....+
T Consensus 51 g~mG~glpaAiGa~la~p----~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~-~~~~~~ 123 (193)
T cd03375 51 TLHGRALAVATGVKLANP----DLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTTPEG 123 (193)
T ss_pred hhhccHHHHHHHHHHhCC----CCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccC-CCCCCC
Confidence 788999999999999864 899999999999 55 4456799999999999999999974332110000 000000
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
.- . . ....+ ...-.+++.++++++|+.++..+.-.+.++|.++++
T Consensus 124 ~~------------~---~------~~~~~--------------~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 168 (193)
T cd03375 124 FK------------T---K------TTPYG--------------NIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK 168 (193)
T ss_pred Cc------------c---c------CCCCC--------------CCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH
Confidence 00 0 0 00000 000014566779999998863333478999999999
Q ss_pred HhhhcCCCCcEEEEEEecc
Q 004923 346 EVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T~k 364 (723)
++.+ .++|++|++.+.=
T Consensus 169 ~al~--~~gp~vIev~~~C 185 (193)
T cd03375 169 KAIQ--HKGFSFVEVLSPC 185 (193)
T ss_pred HHHh--cCCCEEEEEECCC
Confidence 9987 5899999998653
No 95
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.22 E-value=1.7e-09 Score=121.61 Aligned_cols=249 Identities=21% Similarity=0.257 Sum_probs=171.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCC---EEEEeeCCCCCCCCCCCCCchhhH
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGSFDV 517 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lp---v~~v~~~~G~~G~dG~tH~~~~d~ 517 (723)
+-+++.+.+|--+..+|+|+++.|.|.++..=...+.++.|.+++ +++.... |+++.+..|... -|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s-~ay~Gv~GGlviv~aDDpg~~S-----Sqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMS-LAYAGVTGGLVIVVADDPGMHS-----SQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhh-hhhcCccccEEEEEccCCCccc-----ccchhHh
Confidence 789999999999999999999999999999988889999998765 4554432 444445444311 1222333
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCCCc---cccC-----CCC-CCC-CCc-ccCceEE-
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNGI---GVEL-----PPG-NKG-IPL-EVGKGRI- 582 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~~~---~~~~-----p~~-~~~-~~~-~~gk~~v- 582 (723)
.++...-.+-|+.|+|+||++++++.+++. ...|+++|.+....- .+++ +.. .+. ... +.++...
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 455555677799999999999999999984 456999987543210 0000 000 000 000 1111110
Q ss_pred ------------------------------eeeC--CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH
Q 004923 583 ------------------------------LIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (723)
Q Consensus 583 ------------------------------l~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~ 630 (723)
+..+ .++-||+.|-....+.+|.+ +-|++..++.+-+.+|||.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~---~lgl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALE---DLGLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHH---HcCCCceeEEecCCcCCCHHH
Confidence 0013 68999999999998888865 458999999999999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 631 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 631 i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
+++.++..+.|+||||... =+-.++.+.+.++|. ++.-.|-.+.+.+ ...-+|++.|..+|.++++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP--------~~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLP--------MEGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccC--------cccccCHHHHHHHHHHHhC
Confidence 9999999999999999875 445666666655543 2222233333332 1234899999999999887
Q ss_pred cc
Q 004923 711 QT 712 (723)
Q Consensus 711 ~~ 712 (723)
+.
T Consensus 355 ~~ 356 (640)
T COG4231 355 KE 356 (640)
T ss_pred cc
Confidence 64
No 96
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.22 E-value=5.9e-11 Score=137.50 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=96.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+.
T Consensus 406 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~------------- 466 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYN------------- 466 (539)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 67899999999999999875 78999999999999 666779999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+. ..++ ..|. +....++-.+|+..++++||+.+..+ ++.++|.++|
T Consensus 467 -~~~-~~~~----~~~~------------------------~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 513 (539)
T TIGR02418 467 -MVE-FQEE----MKYQ------------------------RSSGVDFGPIDFVKYAESFGAKGLRV---ESPDQLEPTL 513 (539)
T ss_pred -HHH-HHHH----HhcC------------------------CcccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 110 0000 0000 00001222467788999999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|++.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 514 RQAME--VEGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99986 579999999987544
No 97
>PRK08266 hypothetical protein; Provisional
Probab=99.21 E-value=5.5e-11 Score=137.87 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|++++.+ +++|||++|||+++.+ .+++.+|.++++|+++||.||+.+.
T Consensus 400 ~~GsmG~~lp~aiGa~la~p----~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~------------- 460 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVANP----DRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYG------------- 460 (542)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 35899999999999988864 8899999999999954 6889999999999999988887321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+. ..++.. |. + +....++-.+++..++++||+.+... .+.++|..++
T Consensus 461 -~~~-~~~~~~----~~-------------~----------~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 508 (542)
T PRK08266 461 -NVR-RDQKRR----FG-------------G----------RVVASDLVNPDFVKLAESFGVAAFRV---DSPEELRAAL 508 (542)
T ss_pred -HHH-HHHHHh----cC-------------C----------CcccCCCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 110 000000 00 0 00001111356778899999998744 5789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
+++.+ .++|++|++.|.++..
T Consensus 509 ~~a~~--~~~p~liev~i~~~~~ 529 (542)
T PRK08266 509 EAALA--HGGPVLIEVPVPRGSE 529 (542)
T ss_pred HHHHh--CCCcEEEEEEecCCCC
Confidence 99876 5789999999988753
No 98
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.20 E-value=5.4e-11 Score=138.83 Aligned_cols=128 Identities=17% Similarity=0.324 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++. ...++.+|..+++|+++||.||+.+.
T Consensus 406 ~~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~g------------- 466 (578)
T PRK06546 406 RHGSMANALPHAIGAQLADP----GRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTLG------------- 466 (578)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCccc-------------
Confidence 56899999999999999975 789999999999994 45669999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+... .... + ......++-.+|+.+++++||+++.. | ++.++|.+++
T Consensus 467 -~i~~~-q~~~-------------------~---------~~~~~~~~~~~df~~lA~a~G~~~~~-v--~~~~el~~al 513 (578)
T PRK06546 467 -MVKLE-MLVD-------------------G---------LPDFGTDHPPVDYAAIAAALGIHAVR-V--EDPKDVRGAL 513 (578)
T ss_pred -cHHHH-HHhc-------------------C---------CCcccccCCCCCHHHHHHHCCCeeEE-e--CCHHHHHHHH
Confidence 11000 0000 0 00001112245777889999998874 4 5899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 514 REAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHHh--CCCCEEEEEEeCCCc
Confidence 99986 589999999997654
No 99
>PRK07064 hypothetical protein; Provisional
Probab=99.20 E-value=5.2e-11 Score=138.16 Aligned_cols=127 Identities=21% Similarity=0.311 Sum_probs=94.5
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
|++|+++|+|+|+++|.+ +++|+|++|||+++ |...+|.+|..+++|+++||.||+.+ +.
T Consensus 405 g~mG~~lpaAiGa~lA~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y--------------g~ 464 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGP----GRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY--------------GV 464 (544)
T ss_pred CccccccchhhhhhhhCc----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh--------------HH
Confidence 789999999999999864 88999999999999 56678999999999999999999741 22
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~ 346 (723)
+. .+++.. | ..+....++-.+++.+++++||+++... ++.++|.+++++
T Consensus 465 ~~-~~~~~~----~-----------------------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~ 513 (544)
T PRK07064 465 IR-NIQDAQ----Y-----------------------GGRRYYVELHTPDFALLAASLGLPHWRV---TSADDFEAVLRE 513 (544)
T ss_pred HH-HHHHHh----c-----------------------CCccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHH
Confidence 21 100000 0 0000111222467788899999998754 789999999999
Q ss_pred hhhcCCCCcEEEEEEeccCC
Q 004923 347 VKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 347 a~~~~~~~P~~I~v~T~kg~ 366 (723)
+.+ .++|++|+|.+....
T Consensus 514 a~~--~~~p~lIeV~~~~~~ 531 (544)
T PRK07064 514 ALA--KEGPVLVEVDMLSIG 531 (544)
T ss_pred HHc--CCCCEEEEEEccccc
Confidence 986 579999999987433
No 100
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.20 E-value=8.7e-11 Score=121.46 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=92.3
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
.|++|+++++|+|.+++. ++++|||++|||++ + +..++|.+|.+++.|+++||.||+.+.. |..+.......
T Consensus 61 ~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~-tg~q~~~~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGRG----KDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMN-TGIQRSGSTPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCccccc-CCCCCCCCCCC
Confidence 368888888888876654 48899999999995 6 5567899999999999999999985332 11111000000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+... ..+ ..+..++ ......+|+..+++++|+.++..++-++.++|.+++
T Consensus 134 ~~~~------~~~---------------~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAWT------TTT---------------PVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCEe------ecC---------------CCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 0000 000 0000000 000112466778999999987656668999999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 004923 345 EEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~ 363 (723)
+++.+ .++|++|++.+.
T Consensus 184 ~~a~~--~~gP~lIev~~~ 200 (235)
T cd03376 184 KKALS--IEGPAYIHILSP 200 (235)
T ss_pred HHHHh--CCCCEEEEEECC
Confidence 99987 579999999865
No 101
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.19 E-value=5.8e-11 Score=138.62 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 406 ~~G~mG~~lpaAiGa~la~p----~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~-------------- 465 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP----GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVL-------------- 465 (574)
T ss_pred CcccccchHHHHHHHHHhCC----CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 56899999999999999875 88999999999999 56677999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
|.+. .....+ .......++-.+|+.+++++||+++... ++.++|..++
T Consensus 466 g~i~-~~~~~~----------------------------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (574)
T PRK09124 466 GFVA-MEMKAG----------------------------GYLTDGTDLHNPDFAAIAEACGITGIRV---EKASELDGAL 513 (574)
T ss_pred ccHH-HHHHhc----------------------------CCccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 1111 000000 0000111222357788899999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99986 579999999987544
No 102
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.19 E-value=7.6e-11 Score=137.13 Aligned_cols=127 Identities=18% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|++++.+ +++|||++|||+++ +..+++.+|..+++|+++||.||+.+
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~-------------- 472 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLFP----ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMY-------------- 472 (557)
T ss_pred CCccccchHHHHHHHHHhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45999999999999998865 88999999999999 77789999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHH-hhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~-~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+...... .|. ..+ ..++..+++.+++++||+.+.. | ++.++|.++
T Consensus 473 ~~~~~~~~~-----~~~------------------------~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~a 520 (557)
T PRK08199 473 GTIRMHQER-----EYP------------------------GRVSGTDLTNPDFAALARAYGGHGET-V--ERTEDFAPA 520 (557)
T ss_pred hHHHHHHHH-----hcC------------------------CccccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHH
Confidence 111100000 000 000 0112235677889999999874 4 579999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg 365 (723)
++++.+ .++|++|+|.|.+.
T Consensus 521 l~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 521 FERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHHh--CCCCEEEEEEeCHH
Confidence 999886 58999999999754
No 103
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.19 E-value=8e-11 Score=137.67 Aligned_cols=129 Identities=16% Similarity=0.294 Sum_probs=96.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 435 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~-------------- 494 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAHP----DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYL-------------- 494 (587)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 55899999999999999975 88999999999999 66778999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+.. .++..-+. .+. ..+ ..+|+..+.++||+++... ++.++|.+
T Consensus 495 ~~i~~-~q~~~~~~----------------------------~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~ 542 (587)
T PRK06965 495 GMVRQ-WQEIEYSK----------------------------RYSHSYMDALPDFVKLAEAYGHVGMRI---EKTSDVEP 542 (587)
T ss_pred hHHHH-HHHHhcCC----------------------------CccccCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 22210 00000000 000 011 1357788899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+|+++.+. .++|++|+|.+.+..
T Consensus 543 al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 543 ALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHhc-CCCcEEEEEEecccc
Confidence 99998752 368999999998644
No 104
>PRK07586 hypothetical protein; Validated
Probab=99.19 E-value=3e-10 Score=130.93 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=91.2
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
|++|+++|+|+|+++|++ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+ +.
T Consensus 385 g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y--------------~~ 444 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP----DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY--------------AI 444 (514)
T ss_pred cccccHHHHHHHHHHhCC----CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh--------------HH
Confidence 889999999999999975 88999999999999 66788999999999999988888732 22
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc--cCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM--ISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~--~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+... ++.... ...+.. ...+ .+. -.+|+.+++++||+.+..+ ++.++|..++
T Consensus 445 ~~~~-~~~~~~--------------~~~~~~-------~~~~-~~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al 498 (514)
T PRK07586 445 LRGE-LARVGA--------------GNPGPR-------ALDM-LDLDDPDLDWVALAEGMGVPARRV---TTAEEFADAL 498 (514)
T ss_pred HHHH-HHHhcC--------------CCCCcc-------cccc-ccCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHH
Confidence 2100 000000 000000 0000 011 1257788899999998755 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEe
Q 004923 345 EEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T 362 (723)
+++.+ .++|++|+|.+
T Consensus 499 ~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 499 AAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHc--CCCCEEEEEEC
Confidence 99986 57999999863
No 105
>PRK05858 hypothetical protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=135.33 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=96.0
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++++|+|+++|.+ +++|||++|||+++ +....+.+|.++++|+++||.||+.+
T Consensus 405 ~~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y-------------- 464 (542)
T PRK05858 405 PFGCLGTGPGYALAARLARP----SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIW-------------- 464 (542)
T ss_pred CccccccchhHHHHHHHhCC----CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCch--------------
Confidence 45899999999999999875 88999999999999 66677999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+....... | + .....++ -.+|+.++.++||..+..+ .+.++|..+
T Consensus 465 ~~~~~~~~~~-----~--------------~----------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 512 (542)
T PRK05858 465 GLEKHPMEAL-----Y--------------G----------YDVAADLRPGTRYDEVVRALGGHGELV---TVPAELGPA 512 (542)
T ss_pred hhHHHHHHHh-----c--------------C----------CccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 1111000000 0 0 0001112 2367788999999988755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
++++.+ .++|++|++.|.+..
T Consensus 513 l~~a~~--~~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFA--SGVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHh--CCCcEEEEEEECCCc
Confidence 999876 589999999997653
No 106
>PRK07524 hypothetical protein; Provisional
Probab=99.18 E-value=9.7e-11 Score=135.62 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +...++.+|..+++|+++||.||+.+
T Consensus 405 ~~g~mG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~-------------- 464 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGAP----ERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY-------------- 464 (535)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 56999999999999999864 88999999999998 44566999999999999999999731
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+....... .. .....++-.+|+.+++++||+++.. | .+.++|.+++
T Consensus 465 g~i~~~~~~~--------------~~---------------~~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~al 512 (535)
T PRK07524 465 GEIRRYMVAR--------------DI---------------EPVGVDPYTPDFIALARAFGCAAER-V--ADLEQLQAAL 512 (535)
T ss_pred HHHHHHHHHh--------------cC---------------CccccCCCCCCHHHHHHHCCCcEEE-e--CCHHHHHHHH
Confidence 2221100000 00 0000112245677889999998874 4 5899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
+++.+ .++|++|||.+.+-.+
T Consensus 513 ~~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHh--CCCCEEEEEECCcccc
Confidence 99987 5899999999887554
No 107
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.18 E-value=1.7e-10 Score=122.02 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=106.7
Q ss_pred cCCcccchhhHHHHHHHHHhhhcCCC-CeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 004923 184 FGTGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (723)
Q Consensus 184 ~g~G~~G~~ls~AlG~A~A~~~~g~~-~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~ 262 (723)
.-....|.+++.|.|++.|.+.++++ ..|++++|||++..+-+ |+|++|..++.|+++||.||+. ..-|..|..++.
T Consensus 66 ~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~-~~~TGgQ~S~~T 143 (300)
T PRK11864 66 VLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEA-YMNTGIQRSSST 143 (300)
T ss_pred ceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCee-eecCCCCCCCCC
Confidence 34577788999999999999887765 45666999999988764 9999999999999999999983 555666666666
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 263 ~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.|+..+. ...|.... + -|-..+..++|..|+..++--|+.++.+
T Consensus 144 p~ga~t~t---------------------sp~G~~~~----k----------kdi~~i~~a~g~~yVA~~~~~~~~~~~~ 188 (300)
T PRK11864 144 PYGAWTTT---------------------TPGGKREH----K----------KPVPDIMAAHKVPYVATASIAYPEDFIR 188 (300)
T ss_pred cCCCcccc---------------------CCCCCcCC----C----------CCHHHHHHHcCCCEEEEEeCCCHHHHHH
Confidence 66643211 00111110 0 1123457889999998888899999999
Q ss_pred HHHHhhhcCCCCcEEEEEEecc
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~k 364 (723)
++++|.+ .+||.+|++.+.-
T Consensus 189 ~i~~A~~--~~Gps~I~~~spC 208 (300)
T PRK11864 189 KLKKAKE--IRGFKFIHLLAPC 208 (300)
T ss_pred HHHHHHh--CCCCEEEEEeCCC
Confidence 9999987 5899999998753
No 108
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.18 E-value=9.8e-11 Score=137.07 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=95.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 428 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y-------------- 487 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAHP----DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM-------------- 487 (595)
T ss_pred CchhhhhhHHHHHHHHHhCC----CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 55999999999999999875 88999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+. ..++....+.+ ..... ..+|+..++++||+++... .+.++|.++
T Consensus 488 ~~i~-~~q~~~~~~~~---------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 536 (595)
T PRK09107 488 GMVR-QWQQLLHGNRL---------------------------SHSYTEAMPDFVKLAEAYGAVGIRC---EKPGDLDDA 536 (595)
T ss_pred HHHH-HHHHHHhCCcc---------------------------ccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 2121 00000000000 00001 1257788899999998855 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg 365 (723)
|+++.+ .++|++|+|.+.+-
T Consensus 537 l~~a~~--~~~p~lIeV~i~~~ 556 (595)
T PRK09107 537 IQEMID--VDKPVIFDCRVANL 556 (595)
T ss_pred HHHHHh--CCCCEEEEEEecCc
Confidence 999986 58999999999753
No 109
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.17 E-value=9.1e-11 Score=136.24 Aligned_cols=127 Identities=18% Similarity=0.331 Sum_probs=95.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++++|+|+++|.+ ++++|||++|||+++ +...+|.+|..+++|+++||.||+.+
T Consensus 394 ~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~-------------- 454 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKL-------------- 454 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCcc--------------
Confidence 46999999999999998862 178999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+. ..++. . ..+.+..++..+|+.+++++||+++..+ ++.++|..++
T Consensus 455 g~i~-~~q~~---------------------------~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 502 (549)
T PRK06457 455 GMIK-FEQEV---------------------------M-GYPEWGVDLYNPDFTKIAESIGFKGFRL---EEPKEAEEII 502 (549)
T ss_pred chHH-HHHHH---------------------------h-cCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 2221 00000 0 0000111222467788999999998855 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEecc
Q 004923 345 EEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~k 364 (723)
+++.+ .++|++|+|.|.+
T Consensus 503 ~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHh--CCCCEEEEEEeCc
Confidence 99986 5799999999974
No 110
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.17 E-value=1.1e-10 Score=135.61 Aligned_cols=128 Identities=22% Similarity=0.356 Sum_probs=95.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|+|++|||+++ +...+|.+|..+++|+++||.||+.+
T Consensus 399 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------- 458 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVARP----DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRL-------------- 458 (548)
T ss_pred chhhhhchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 55999999999999999864 88999999999999 55677999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+... ++.. |. ..+. .++ -.+|+..++++||+++... .+.++|.+
T Consensus 459 ~~~~~~-~~~~----~~------------------------~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 506 (548)
T PRK08978 459 GMVRQW-QQLF----FD------------------------ERYSETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEA 506 (548)
T ss_pred HHHHHH-HHHH----hC------------------------CcceecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 222100 0000 00 0000 111 1357788899999998855 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++++.+ .++|++|+|.+.+..
T Consensus 507 al~~a~~--~~~p~lIeV~id~~~ 528 (548)
T PRK08978 507 ALDTLLN--SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 579999999997644
No 111
>PRK08611 pyruvate oxidase; Provisional
Probab=99.17 E-value=1.1e-10 Score=136.40 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=96.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++++|+|+++|.. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 406 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~-------------- 465 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAFP----DRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQL-------------- 465 (576)
T ss_pred CchhhhhhHHHHHHHHHhCC----CCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45899999999999999864 78999999999999 56678999999999999999888731
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+. ..+..+. ...+..++-.+|+.+++++||..+..+ ++.++|..++
T Consensus 466 g~i~-~~q~~~~----------------------------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (576)
T PRK08611 466 AFIK-YEQQAAG----------------------------ELEYAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPAF 513 (576)
T ss_pred hHHH-HHHHHhc----------------------------CCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 2221 0000000 000111222467788999999998855 8999999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99886 589999999997644
No 112
>PLN02470 acetolactate synthase
Probab=99.16 E-value=1.3e-10 Score=136.02 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=95.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 424 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~y-------------- 483 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHL-------------- 483 (585)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45999999999999999875 88999999999999 55678999999999999999999732
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+... ++......+ .....+... ......+|+.+++++||+.+... ++.++|.+++
T Consensus 484 g~i~~~-~~~~~~~~~---------~~~~~~~~~----------~~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al 540 (585)
T PLN02470 484 GMVVQW-EDRFYKANR---------AHTYLGDPD----------AEAEIFPDFLKFAEGCKIPAARV---TRKSDLREAI 540 (585)
T ss_pred hHHHHH-HHHHhCCce---------eeeecCccc----------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 222100 000000000 000000000 00001256778899999998755 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++|+|.+.+..
T Consensus 541 ~~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 541 QKMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99986 579999999997544
No 113
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.16 E-value=1.4e-10 Score=135.24 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=94.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...++.+|..+++|+++||.||+.+.
T Consensus 420 ~~gsmG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~------------- 480 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAKE----EELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLG------------- 480 (570)
T ss_pred CcccccchhhHHHhhHhhcC----CCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 45999999999999999864 88999999999998 555679999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+. ..++.....++ ...++-.+++.++.++||.+.... ++.++|..++
T Consensus 481 -~~~-~~q~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 528 (570)
T PRK06725 481 -MVR-QWQEMFYENRL---------------------------SESKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVM 528 (570)
T ss_pred -HHH-HHHHHhcCCcc---------------------------ccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 110 00000000000 001111356778899999998754 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+ .++|++|++.+.+.
T Consensus 529 ~~a~~--~~~p~liev~id~~ 547 (570)
T PRK06725 529 LEAFA--HEGPVVVDFCVEEG 547 (570)
T ss_pred HHHHh--CCCCEEEEEEeCCc
Confidence 99986 58999999999753
No 114
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.16 E-value=5.8e-10 Score=130.06 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+.
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~------------- 481 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY------------- 481 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-------------
Confidence 4599999999999999983 78899999999999 666779999999999999999997310
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
...++.. ....+....++ -.+++.+++++||+.+... ++.++|..+
T Consensus 482 ----~~~~~~~--------------------------~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 528 (569)
T PRK09259 482 ----RGDDVNL--------------------------SGAGDPSPTVLVHHARYDKMMEAFGGVGYNV---TTPDELRHA 528 (569)
T ss_pred ----HHHHHHh--------------------------hcCCCccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 0000000 00000000111 1356788899999998755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
++++.+ .++|++|+|.+.+..+
T Consensus 529 l~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 529 LTEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHh--CCCCEEEEEEECCCCC
Confidence 999986 5899999999987654
No 115
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.16 E-value=1.5e-10 Score=135.22 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=95.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y-------------- 478 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMALP----EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL-------------- 478 (574)
T ss_pred CccchhhHHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 45899999999999999975 78999999999999 66778999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+... ++.. |. + +.....+ -.+|+.+++++||...... ++.++|..+
T Consensus 479 g~i~~~-q~~~----~~-------------~----------~~~~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~a 527 (574)
T PRK07979 479 GMVKQW-QDMI----YS-------------G----------RHSQSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESK 527 (574)
T ss_pred hHHHHH-HHHh----cC-------------C----------ccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 222111 0000 00 0 0000011 1257788899999988754 789999999
Q ss_pred HHHhhhc-CCCCcEEEEEEeccC
Q 004923 344 LEEVKNT-KTTGPVLIHVVTEKG 365 (723)
Q Consensus 344 l~~a~~~-~~~~P~~I~v~T~kg 365 (723)
++++.+. +.++|.+|+|.+.+-
T Consensus 528 l~~a~~~~~~~~p~lIeV~i~~~ 550 (574)
T PRK07979 528 LSEALEQVRNNRLVFVDVTVDGS 550 (574)
T ss_pred HHHHHhccCCCCcEEEEEEECCc
Confidence 9998752 137899999999753
No 116
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.16 E-value=1.2e-10 Score=136.15 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++||+++|||+++ |...+|.+|.++++|+++||.||+.+
T Consensus 416 ~~gsmG~glpaaiGa~lA~p----dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~y-------------- 475 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAADP----KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYL-------------- 475 (588)
T ss_pred ccccccchHhHHHhhhhhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45899999999999999875 88999999999999 55677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
|.+... ++......+. +....... ..-.+....|+.+++|+||..+..+ ++.++|..+|
T Consensus 476 g~i~~~-q~~~~~~~~~-------------~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 534 (588)
T TIGR01504 476 GLIRQA-QRAFDMDYCV-------------QLAFENIN----SSEVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAF 534 (588)
T ss_pred HHHHHH-HHHhcccccc-------------eeeccccc----cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 222111 0000000000 00000000 0000111357788999999998755 7899999999
Q ss_pred HHhhhc--CCCCcEEEEEEeccCC
Q 004923 345 EEVKNT--KTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~--~~~~P~~I~v~T~kg~ 366 (723)
+++.+. ..++|++|+|.+.+..
T Consensus 535 ~~a~~~~~~~~~p~lIeV~i~~~~ 558 (588)
T TIGR01504 535 EQAKALMAEHRVPVVVEVILERVT 558 (588)
T ss_pred HHHHhhcccCCCcEEEEEEecccc
Confidence 998631 1479999999986543
No 117
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.15 E-value=1.5e-10 Score=135.03 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~y-------------- 478 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTL-------------- 478 (572)
T ss_pred CcccccchhHHHHHHHHhCC----CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCch--------------
Confidence 56999999999999999975 78999999999999 55577999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+... +... |. + +....++ -.+|+..++++||.++... ++.++|.++
T Consensus 479 g~i~~~-q~~~----~~----------------------~-~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~a 527 (572)
T PRK06456 479 GLVRQV-QDLF----FG----------------------K-RIVGVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKS 527 (572)
T ss_pred HHHHHH-HHHh----hC----------------------C-CcccccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHH
Confidence 222100 0000 00 0 0000111 1257788899999988755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
|+++.+ .++|++|+|.+.+..
T Consensus 528 l~~a~~--~~~p~lIev~v~~~~ 548 (572)
T PRK06456 528 LKSAIK--EDIPAVIRVPVDKEE 548 (572)
T ss_pred HHHHHh--CCCCEEEEEEeCccc
Confidence 999986 589999999997643
No 118
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.15 E-value=1.6e-10 Score=134.91 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------- 478 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAMP----DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL-------------- 478 (572)
T ss_pred CcccccchhhHHHhhhhhCC----CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------
Confidence 45899999999999999875 78999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+... ++.. |. + +.....+ ..+|+.+++++||...... ++.++|..+
T Consensus 479 ~~i~~~-q~~~----~~-------------~----------~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~a 527 (572)
T PRK08979 479 GMVKQW-QDMI----YQ-------------G----------RHSHSYMDSVPDFAKIAEAYGHVGIRI---SDPDELESG 527 (572)
T ss_pred HHHHHH-HHHH----hC-------------C----------cccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 222100 0000 00 0 0000001 1257788899999988755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg 365 (723)
|+++.+. .++|++|+|.+.+.
T Consensus 528 l~~a~~~-~~~p~lIev~i~~~ 548 (572)
T PRK08979 528 LEKALAM-KDRLVFVDINVDET 548 (572)
T ss_pred HHHHHhc-CCCcEEEEEEeCCc
Confidence 9998752 37899999998753
No 119
>PRK06154 hypothetical protein; Provisional
Probab=99.15 E-value=1.1e-10 Score=135.92 Aligned_cols=130 Identities=20% Similarity=0.222 Sum_probs=95.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+..
T Consensus 429 ~~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~------------ 490 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLARP----DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGG------------ 490 (565)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccce------------
Confidence 45899999999999999875 89999999999999 6667899999999999999999984221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.... ..+. . .....+ ..+|+.++.++||.++... ++.++|..+|
T Consensus 491 --~~~~~-~~~~-~---------------------------~~~~~~-~~~df~~lA~a~G~~g~~V---~~~~el~~al 535 (565)
T PRK06154 491 --YDKVM-PVST-T---------------------------KYRATD-ISGDYAAIARALGGYGERV---EDPEMLVPAL 535 (565)
T ss_pred --eehhh-hhhc-C---------------------------cccccC-CCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 10000 0000 0 000011 1357788899999998755 6899999999
Q ss_pred HHhhhc-CCCCcEEEEEEeccCCC
Q 004923 345 EEVKNT-KTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 345 ~~a~~~-~~~~P~~I~v~T~kg~G 367 (723)
+++.+. ..++|++|++.+.+...
T Consensus 536 ~~a~~~~~~~~p~lIev~v~~~~~ 559 (565)
T PRK06154 536 LRALRKVKEGTPALLEVITSEETA 559 (565)
T ss_pred HHHHhhccCCCeEEEEEEeChHHh
Confidence 998741 14789999999876543
No 120
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.15 E-value=1.5e-10 Score=136.14 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=95.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ |....+.+|..+++|+++||.||+.+
T Consensus 432 ~~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~-------------- 491 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALP----DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQ-------------- 491 (616)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 56899999999999999875 88999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc--cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM--ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~--~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+. ..++..-...| ...++ -.+|+.+++++||.+++.. ++.++|..
T Consensus 492 g~i~-~~q~~~~~~~~---------------------------~~~~~~~~~~d~~~~A~a~G~~g~~V---~~~~el~~ 540 (616)
T PRK07418 492 GMVR-QWQESFYGERY---------------------------SASNMEPGMPDFVKLAEAFGVKGMVI---SERDQLKD 540 (616)
T ss_pred hHHH-HHHHHhcCCCc---------------------------eeecCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHH
Confidence 2221 00000000000 00111 1256778899999998855 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+|+++.+ .++|++|+|.+.+..
T Consensus 541 al~~a~~--~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 541 AIAEALA--HDGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 578999999997544
No 121
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.15 E-value=1e-10 Score=135.60 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=91.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+.+
T Consensus 402 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~------------ 463 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTACP----NRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTV------------ 463 (539)
T ss_pred hhhhhhhHHHHHHHHHhcCC----CCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEE------------
Confidence 46899999999999999864 89999999999999 7778899999999999999999974321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCe----EEEecCCCCHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY----YIGPVDGHNVDDL 340 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~----~~~~vDGhd~~~l 340 (723)
+. .+.. ....| .++-.+++.++.++||.. +... ++.++|
T Consensus 464 --i~-~~~~--~~~~~-----------------------------~~~~~~df~~la~a~G~~~~~~~~~v---~~~~el 506 (539)
T TIGR03393 464 --ER-AIHG--AEQRY-----------------------------NDIALWNWTHLPQALSLDPQSECWRV---SEAEQL 506 (539)
T ss_pred --EE-eecC--CCCCc-----------------------------CcCCCCCHHHHHHHcCCCCccceEEe---ccHHHH
Confidence 10 0000 00000 011124566778999974 5534 789999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecc
Q 004923 341 VAILEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 341 ~~al~~a~~~~~~~P~~I~v~T~k 364 (723)
.++++++.+ .++|++|+|.+.+
T Consensus 507 ~~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 507 ADVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHhc--cCCeEEEEEEcCc
Confidence 999999986 5899999999864
No 122
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.14 E-value=1.8e-10 Score=134.36 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |....|.+|..+++|+++||.||+.+
T Consensus 421 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y-------------- 480 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGAL-------------- 480 (574)
T ss_pred CcchhhchHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45899999999999999875 88999999999999 66678999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+... ++..-+.++ ....+ -.+|+.+++++||..+... .+.++|.++
T Consensus 481 ~~i~~~-q~~~~~~~~---------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 529 (574)
T PRK06466 481 GMVRQW-QDMQYEGRH---------------------------SHSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKPK 529 (574)
T ss_pred HHHHHH-HHHhcCCce---------------------------eecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 222110 000000000 00011 1257788899999998755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
|+++.+. .++|++|++.+.+..
T Consensus 530 l~~a~~~-~~~p~lIev~i~~~~ 551 (574)
T PRK06466 530 LEEAFAM-KDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHhc-CCCcEEEEEEeCCcc
Confidence 9988752 279999999997643
No 123
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.14 E-value=2e-10 Score=133.77 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=95.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|..+++|+++||.||+.+
T Consensus 412 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 471 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGKP----DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL-------------- 471 (561)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 45899999999999999864 88999999999999 55677999999999999999999741
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+. ..++..... .+. .++ -.+|+.+++++||.++... ++.++|.+
T Consensus 472 ~~i~-~~~~~~~~~----------------------------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~ 519 (561)
T PRK06048 472 GMVR-QWQELFYDK----------------------------RYSHTCIKGSVDFVKLAEAYGALGLRV---EKPSEVRP 519 (561)
T ss_pred HHHH-HHHHHHcCC----------------------------cccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 2221 000000000 000 011 1357788899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+|+++.+ .++|++|++.+.+..
T Consensus 520 al~~a~~--~~~p~liev~~~~~~ 541 (561)
T PRK06048 520 AIEEAVA--SDRPVVIDFIVECEE 541 (561)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 589999999997533
No 124
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.13 E-value=1.2e-09 Score=126.98 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|. +++||+++|||+++ |....|.+|..+++|+++||.||+.+.. +...
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~------~~~~-- 479 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR------GDDV-- 479 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh------hhhh--
Confidence 4589999999999999973 68899999999999 6666799999999999999999973210 0000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
... +. +....++ -.+++.++.++||+.+... ++.++|..+
T Consensus 480 ---------~~~------------------~~---------~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~el~~a 520 (554)
T TIGR03254 480 ---------NVV------------------GA---------DPAPTVLVHGARYDKMMKAFGGVGYNV---TTPDELKAA 520 (554)
T ss_pred ---------hhc------------------CC---------CCCccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 000 00 0000111 1356778899999988755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
++++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALA--SGKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHh--CCCCEEEEEEECCCc
Confidence 999876 579999999997654
No 125
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.13 E-value=2e-10 Score=134.33 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=94.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y-------------- 487 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQ-------------- 487 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 56999999999999999975 78999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+... ++..-..++. ......-.+++..+.++||.++... ++.++|.+++
T Consensus 488 ~~i~~~-q~~~~~~~~~-------------------------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 538 (585)
T CHL00099 488 GMVRQW-QQAFYGERYS-------------------------HSNMEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSL 538 (585)
T ss_pred hHHHHH-HHHhcCCCcc-------------------------cccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 212100 0000000000 0000001246677899999998844 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+ .++|.+|+|.|...
T Consensus 539 ~~a~~--~~~p~liev~v~~~ 557 (585)
T CHL00099 539 KEALD--YDGPVLIDCQVIED 557 (585)
T ss_pred HHHHh--CCCCEEEEEEECCC
Confidence 99986 57999999999753
No 126
>PRK12474 hypothetical protein; Provisional
Probab=99.13 E-value=2.7e-10 Score=131.39 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=91.8
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+ +.
T Consensus 389 gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y--------------~~ 448 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSY--------------AI 448 (518)
T ss_pred CccCccHHHHHHHHHHCC----CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcc--------------hH
Confidence 999999999999999975 89999999999999 66678999999999999999999842 22
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhccc--CCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~--~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+............+ .. ...+ .+.. ..|+.+++++||+++... .+.++|..++
T Consensus 449 i~~~~~~~~~~~~~---------------~~-------~~~~-~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~al 502 (518)
T PRK12474 449 LNGELQRVGAQGAG---------------RN-------ALSM-LDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQY 502 (518)
T ss_pred HHHHHHhhcCCCCC---------------cc-------cccc-ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 21000000000000 00 0000 0111 246788899999988755 6799999999
Q ss_pred HHhhhcCCCCcEEEEEEe
Q 004923 345 EEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T 362 (723)
+++.+ .++|++|++.+
T Consensus 503 ~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 503 AAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHc--CCCCEEEEEEC
Confidence 99986 58999999974
No 127
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.13 E-value=2.2e-10 Score=133.75 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=94.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +..++|++|..+++|+++||.||+.+
T Consensus 419 ~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~-------------- 478 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFL-------------- 478 (574)
T ss_pred CcccccchhHHHHHHHhhcC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 56899999999999999864 78999999999998 55688999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+.. .++.... +. .....+ -.+++..+.++||+.+... ++.++|..+
T Consensus 479 ~~i~~-~q~~~~~-----------------~~----------~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 479 GMVKQ-WQDLIYS-----------------GR----------HSQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred HHHHH-HHHHhcC-----------------Cc----------ccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 11110 0000000 00 000000 1246677899999998854 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
|+++.+. .++|++|+|.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9998763 378999999997544
No 128
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.13 E-value=2.3e-10 Score=133.33 Aligned_cols=129 Identities=17% Similarity=0.206 Sum_probs=94.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++. ...+|.+|..+++|+++||.||+.+
T Consensus 412 ~~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~~-------------- 471 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAVP----DKVVINFTGDGSILM--NIQELMTAVEYKIPVINIILNNNFL-------------- 471 (563)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEecCchhcc--cHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 45899999999999999875 788999999999995 4456999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+. ..++......|. ..++ ..+++.+++++||+.+... ++.++|.++
T Consensus 472 ~~i~-~~~~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 520 (563)
T PRK08527 472 GMVR-QWQTFFYEERYS---------------------------ETDLSTQPDFVKLAESFGGIGFRV---TTKEEFDKA 520 (563)
T ss_pred hhHH-HHHHhhcCCcee---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 1111 000000000000 0011 1246677899999998755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
|+++.+ .++|++|||.+.+..
T Consensus 521 l~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 521 LKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHh--CCCCEEEEEEECCcc
Confidence 999876 579999999998644
No 129
>PRK08617 acetolactate synthase; Reviewed
Probab=99.13 E-value=1.7e-10 Score=134.15 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=95.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 412 ~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 471 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVRP----GKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHY-------------- 471 (552)
T ss_pred ccccccccccHHHhhHhhcC----CCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCcc--------------
Confidence 56889999999999999864 78999999999999 66677999999999999888888732
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+... +. ..|. +....++-.+|+..++++||.++... ++.++|.++|
T Consensus 472 ~~~~~~-~~----~~~~------------------------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 519 (552)
T PRK08617 472 NMVEFQ-EE----MKYG------------------------RSSGVDFGPVDFVKYAESFGAKGLRV---TSPDELEPVL 519 (552)
T ss_pred chHHHH-HH----hhcC------------------------CcccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 111000 00 0000 00001112356778899999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
+++.+ .++|++|++.+.+...
T Consensus 520 ~~a~~--~~~p~liev~~~~~~~ 540 (552)
T PRK08617 520 REALA--TDGPVVIDIPVDYSDN 540 (552)
T ss_pred HHHHh--CCCcEEEEEEeccccc
Confidence 99876 5799999999976543
No 130
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.13 E-value=2.4e-10 Score=133.33 Aligned_cols=128 Identities=18% Similarity=0.292 Sum_probs=94.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|||++|||+++ +...+|++|..+++|+++||.||+.+
T Consensus 422 ~~g~mG~glpaAiGaala~p----~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~-------------- 481 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAKP----DETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEAL-------------- 481 (571)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchH--------------
Confidence 45899999999999999864 88999999999999 45556999999999999999999741
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+ |...... .. ..+. ..+ -.+++.+++++||+.+... ++.++|..
T Consensus 482 ~~i----------------~~~~~~~----------~~---~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~ 529 (571)
T PRK07710 482 GMV----------------RQWQEEF----------YN---QRYSHSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKE 529 (571)
T ss_pred HHH----------------HHHHHHH----------hC---CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 222 1100000 00 0000 011 1256777899999998855 67999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++++.+ .++|++|+|.|....
T Consensus 530 al~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 579999999997544
No 131
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.12 E-value=2.4e-10 Score=133.32 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++||+++|||+++ +...+|.+|..+++|+++||.||+.+
T Consensus 406 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~y-------------- 465 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNYP----DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTY-------------- 465 (575)
T ss_pred CcchhhchHHHHHHHHHhCC----CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45899999999999998865 88999999999999 55677999999999999998888742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+.+.. +.... .....++-.+|+..++++||..+... ++.++|.+++
T Consensus 466 g~i~~~~-~~~~~----------------------------~~~~~~~~~~df~~iA~a~G~~~~~v---~~~~el~~al 513 (575)
T TIGR02720 466 GFIKDEQ-EDTNQ----------------------------PLIGVDFNDADFAKIAEGVGAVGFRV---NKIEQLPAVF 513 (575)
T ss_pred HHHHHHH-HHhCC----------------------------CcccccCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHH
Confidence 2221000 00000 00001222367788899999998744 6889999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+...++|++|++.+.+.
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 998721157999999999764
No 132
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.12 E-value=2.9e-10 Score=132.89 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...++.+|.++++|+++||.||+.+
T Consensus 428 ~~g~mG~~lpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~y-------------- 487 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAAP----DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQW-------------- 487 (579)
T ss_pred ccccccchHHHHHhhhhhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcch--------------
Confidence 55899999999999999864 88999999999999 55577999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcccC-CCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMIS-GSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~~-~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+... +.. .|. +.+. .++-. +|+.+++++||.++... ++.++|..
T Consensus 488 g~i~~~-~~~----~~~------------------------~~~~~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~ 535 (579)
T TIGR03457 488 GAEKKN-QVD----FYN------------------------NRFVGTELESELSFAGIADAMGAKGVVV---DKPEDVGP 535 (579)
T ss_pred HHHHHH-HHH----hhC------------------------CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 222100 000 000 0000 11112 37788899999988754 78999999
Q ss_pred HHHHhhhc-CCCCcEEEEEEeccCCC
Q 004923 343 ILEEVKNT-KTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 343 al~~a~~~-~~~~P~~I~v~T~kg~G 367 (723)
+|+++.+. ..++|++|+|.+.+..+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99988642 24789999999987664
No 133
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.11 E-value=2.2e-10 Score=132.50 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=90.1
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
.|++|+++|+|+|+++|.+ +++|+|++|||+++.+ .+++++|..+++|+++||.||+.+.
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~-------------- 465 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYG-------------- 465 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHH--------------
Confidence 4889999999999999864 7899999999999965 5889999999999999999997321
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
.+ +.+++.... +. ....++-..++.+++++||+.+.. | ++.++|.++++
T Consensus 466 ~~-~~~~~~~~~-----------------~~----------~~~~~~~~~d~~~~a~~~G~~~~~-v--~~~~~l~~al~ 514 (530)
T PRK07092 466 AL-RWFAPVFGV-----------------RD----------VPGLDLPGLDFVALARGYGCEAVR-V--SDAAELADALA 514 (530)
T ss_pred HH-HHHHHhhCC-----------------CC----------CCCCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHHH
Confidence 11 000000000 00 000011124566779999999874 4 57899999999
Q ss_pred HhhhcCCCCcEEEEEEe
Q 004923 346 EVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T 362 (723)
++.+ .++|++|++.|
T Consensus 515 ~a~~--~~~p~liev~~ 529 (530)
T PRK07092 515 RALA--ADGPVLVEVEV 529 (530)
T ss_pred HHHh--CCCCEEEEEEc
Confidence 9886 58999999987
No 134
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.11 E-value=2.7e-10 Score=133.56 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=94.0
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccch-HHHHHHhhhc-----CCCEEEEEECCCCCCcCccCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYL-----DSDMIVILNDNKQVSLPTATLD 258 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~-~EAln~A~~~-----~~nli~Il~dN~~~s~~t~~~~ 258 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |. ...|.+|..+ ++|+++||.||+.+
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~-------- 478 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAHP----DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDL-------- 478 (597)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcc--------
Confidence 45899999999999999875 88999999999998 55 3669999988 89999999999742
Q ss_pred CCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHH
Q 004923 259 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 338 (723)
Q Consensus 259 g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~ 338 (723)
+.+. ..++......+ . ....++-..|+.+++++||+.+... .+.+
T Consensus 479 ------~~i~-~~q~~~~~~~~------------------~-------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~ 523 (597)
T PRK08273 479 ------NQVT-WEQRVMEGDPK------------------F-------EASQDLPDVPYARFAELLGLKGIRV---DDPE 523 (597)
T ss_pred ------hHHH-HHHHHhcCCCc------------------c-------cccccCCCCCHHHHHHHCCCEEEEE---CCHH
Confidence 1111 00000000000 0 0000111245778899999998855 6899
Q ss_pred HHHHHHHHhhhcCCCCcEEEEEEeccCC
Q 004923 339 DLVAILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 339 ~l~~al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+|..+|+++.+ .++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~--~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALA--ADRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEeCCCC
Confidence 99999999986 589999999997644
No 135
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.11 E-value=2.4e-10 Score=134.40 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=95.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|+|++|||+++ |...+|.+|..+++|+++||.||+.+
T Consensus 445 ~~G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~-------------- 504 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL-------------- 504 (612)
T ss_pred CcccccchhhhHHhhhccCC----CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch--------------
Confidence 56899999999999999875 78999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+.+. ..+...-+..+. + .++. ..+.-.+|+.+++++||+.+... ++.++|..+|
T Consensus 505 g~i~-~~q~~~~~~~~~-------------~---~~~~------~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 558 (612)
T PRK07789 505 GMVR-QWQTLFYEERYS-------------N---TDLH------THSHRIPDFVKLAEAYGCVGLRC---EREEDVDAVI 558 (612)
T ss_pred HHHH-HHHHHhhCCCcc-------------e---eecC------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2221 000000000000 0 0000 00001257788899999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++.+. .++|++|+|.+.+.
T Consensus 559 ~~a~~~-~~~p~lIev~i~~~ 578 (612)
T PRK07789 559 EKARAI-NDRPVVIDFVVGKD 578 (612)
T ss_pred HHHHhc-CCCcEEEEEEECCc
Confidence 998762 27999999999753
No 136
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.11 E-value=2.6e-10 Score=132.86 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=93.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.. ..++.+|..+++|+++||.||+.+.
T Consensus 417 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g------------- 477 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALG------------- 477 (564)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccc-------------
Confidence 55899999999999999975 7899999999999954 4559999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
.+.. .++.+...+ .+..++ -..++.+++++||++++.. .+.++|.++
T Consensus 478 -~~~~-~q~~~~~~~---------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 525 (564)
T PRK08155 478 -LVHQ-QQSLFYGQR---------------------------VFAATYPGKINFMQIAAGFGLETCDL---NNEADPQAA 525 (564)
T ss_pred -ccHH-HHHHhcCCC---------------------------eeeccCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 1100 000000000 000011 1246677899999998754 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
++++.+ .++|++|+|.+.+..
T Consensus 526 l~~a~~--~~~p~lIeV~~~~~~ 546 (564)
T PRK08155 526 LQEAIN--RPGPALIHVRIDAEE 546 (564)
T ss_pred HHHHHh--CCCCEEEEEEeCCCc
Confidence 999986 579999999997543
No 137
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.10 E-value=2.8e-10 Score=132.63 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=92.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |....+.+|..+++|+++||.||+.+
T Consensus 416 ~~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 475 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSL-------------- 475 (566)
T ss_pred ccccccchhhHhheeheecC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCc--------------
Confidence 45999999999999999875 88999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcc-cCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
+.+. ..++.. |. + +.....+ -.+++..++++||.++... ++.++|.++
T Consensus 476 ~~i~-~~q~~~----~~-------------~----------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 524 (566)
T PRK07282 476 GMVR-QWQESF----YE-------------G----------RTSESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQD 524 (566)
T ss_pred hHHH-HHHHHH----hC-------------C----------CcccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 1110 000000 00 0 0000111 1356788899999998755 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg 365 (723)
++.+ . .++|++|+|.+.+.
T Consensus 525 l~~~-~--~~~p~lIeV~v~~~ 543 (566)
T PRK07282 525 LEVI-T--EDVPMLIEVDISRK 543 (566)
T ss_pred HHHh-c--CCCCEEEEEEeCCc
Confidence 9754 3 47999999999753
No 138
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.10 E-value=3.1e-10 Score=132.96 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=95.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...++.+|.++++|+++||.||+.+
T Consensus 417 ~~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYL-------------- 476 (591)
T ss_pred ccccccchhhhHHhhhhhCC----CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45899999999999999864 78999999999999 55677999999999999999999841
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
|.+. .++.......+ . +.....+. ..-...-.+|+..++++||.++... ++.++|..++
T Consensus 477 g~i~-~~~~~~~~~~~-----~--------~~~~~~~~----~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 535 (591)
T PRK11269 477 GLIR-QAQRAFDMDYC-----V--------QLAFENIN----SPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAL 535 (591)
T ss_pred hHHH-HHHHHhccCcc-----c--------eeeccccc----cccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2221 11000000000 0 00000000 0000001257788899999998855 8999999999
Q ss_pred HHhhhc--CCCCcEEEEEEeccCC
Q 004923 345 EEVKNT--KTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~--~~~~P~~I~v~T~kg~ 366 (723)
+++.+. +.++|++|+|.+.+..
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~~~ 559 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILERVT 559 (591)
T ss_pred HHHHhhcccCCCcEEEEEEecccc
Confidence 998631 1479999999997543
No 139
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.09 E-value=3.6e-10 Score=131.59 Aligned_cols=129 Identities=21% Similarity=0.313 Sum_probs=93.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++. ...+|.+|.++++|+++||.||+.+.
T Consensus 410 ~~g~mG~~l~aaiGa~la~~----~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAKP----ESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhCC----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45899999999999998864 789999999999995 44569999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhccc-CCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~-~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
.+. ..++.+-..++. ...+. .+|+..++++||++++.. ++.++|.++
T Consensus 471 -~~~-~~q~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~a 518 (558)
T TIGR00118 471 -MVR-QWQELFYEERYS---------------------------HTHMGSLPDFVKLAEAYGIKGIRI---EKPEELDEK 518 (558)
T ss_pred -HHH-HHHHHhcCCcee---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 110 000000000000 00111 256778899999998754 678999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
++++.+ .++|++||+.+.+..
T Consensus 519 l~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 519 LKEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHh--CCCCEEEEEEeCCcc
Confidence 999876 589999999997643
No 140
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.07 E-value=4.6e-10 Score=130.87 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=91.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|. ++++|||++|||+++.+..-+++++|..+++|+++||.||+.+.+
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~------------ 491 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLA------------ 491 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccccc------------
Confidence 5689999999999999875 489999999999999876545799999999999999999974221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHH-hhcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~-~~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+....+.+... .+.. ..+.+ ...+ -..|+..++++||+.+... ++.++|..
T Consensus 492 --~~~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 544 (569)
T PRK08327 492 --VKEAVLEVYPE-GYAA---------------------RKGTFPGTDFDPRPDFAKIAEAFGGYGERV---EDPEELKG 544 (569)
T ss_pred --chhHHhhhCcc-cccc---------------------cccccccccCCCCCCHHHHHHhCCCCceEe---CCHHHHHH
Confidence 10000000000 0000 00000 0011 1246677899999987744 58999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEec
Q 004923 343 ILEEVKNT--KTTGPVLIHVVTE 363 (723)
Q Consensus 343 al~~a~~~--~~~~P~~I~v~T~ 363 (723)
+++++.+. +.++|++||+.+.
T Consensus 545 al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcc
Confidence 99887642 1368999999864
No 141
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.07 E-value=5.5e-10 Score=130.70 Aligned_cols=127 Identities=19% Similarity=0.311 Sum_probs=93.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.. +++|||++|||+++ +...++.+|.++++|+++||.||+.+
T Consensus 417 ~~gsmG~~lpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAKP----DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTL-------------- 476 (586)
T ss_pred CccccccchhHHHhhhhhcC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45899999999999999864 78999999999999 55567999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hcc-cCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+... ++..... .+. .++ ...++.+++++||+++... ++.++|..
T Consensus 477 g~~~~~-~~~~~~~----------------------------~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 524 (586)
T PRK06276 477 GMVYQW-QNLYYGK----------------------------RQSEVHLGETPDFVKLAESYGVKADRV---EKPDEIKE 524 (586)
T ss_pred HHHHHH-HHHHhCC----------------------------CcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 211100 0000000 000 011 1246778899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++++.+ .++|++|+|.+.+.
T Consensus 525 al~~a~~--~~~p~lIeV~i~~~ 545 (586)
T PRK06276 525 ALKEAIK--SGEPYLLDIIIDPA 545 (586)
T ss_pred HHHHHHh--CCCCEEEEEEeccc
Confidence 9999876 57999999999753
No 142
>PLN02573 pyruvate decarboxylase
Probab=99.06 E-value=4.4e-10 Score=131.09 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=91.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.+
T Consensus 426 ~~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~------------ 487 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTI------------ 487 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeE------------
Confidence 56899999999999999975 88999999999999 6767899999999999999999984321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccC-----CeEEEecCCCCHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG-----LYYIGPVDGHNVDD 339 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G-----~~~~~~vDGhd~~~ 339 (723)
+... + +..| ...-.+++.+++++|| +++..+ .+.++
T Consensus 488 --~~~~----~-~~~~-----------------------------~~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~e 528 (578)
T PLN02573 488 --EVEI----H-DGPY-----------------------------NVIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEE 528 (578)
T ss_pred --EEee----c-ccCc-----------------------------cccCCCCHHHHHHHhcCcCCceeEEEe---cCHHH
Confidence 1000 0 0000 0011245667788885 666644 67999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEecc
Q 004923 340 LVAILEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 340 l~~al~~a~~~~~~~P~~I~v~T~k 364 (723)
|.++++++.+...++|++|+|.+.+
T Consensus 529 L~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 529 LIEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence 9999999874224789999999864
No 143
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.02 E-value=8.2e-10 Score=128.86 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=91.0
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
|.|.+|+++|+|+|+++| . +++|||++|||+++.. ..++.+|..+++|+++||.||+.+.+-.
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~---------- 485 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFS---------- 485 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCcccc----------
Confidence 457799999999999988 3 7889999999999954 4569999999999999999997422100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+ ...+.. .| . +.+....-..++..++++||+.+... ++.++|..++
T Consensus 486 -~~----~~~~~~-~~---------------------~---~~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al 532 (568)
T PRK07449 486 -LL----PQPEEE-PV---------------------F---ERFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEAL 532 (568)
T ss_pred -CC----CCCCCc-ch---------------------h---hHhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHH
Confidence 00 000000 00 0 00000111356778899999987744 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEecc
Q 004923 345 EEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~k 364 (723)
+++.+ .++|++|+|.+.+
T Consensus 533 ~~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 533 ADALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHHhc--CCCCEEEEEeCCh
Confidence 99876 5799999999864
No 144
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.02 E-value=1.3e-09 Score=127.54 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=94.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.+ ..++.+|..++.|+++||.||+.+
T Consensus 433 ~~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y-------------- 492 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQW-------------- 492 (588)
T ss_pred cccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 56899999999999999865 7899999999999955 456999999999999999888731
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh-hccc-CCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~-~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.+.... .. .|. ..+. .++- .+++.++.++||.+++.. ++.++|.+
T Consensus 493 ~~~~~~~-~~----~~~------------------------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 540 (588)
T PRK07525 493 GAEKKNQ-VD----FYN------------------------NRFVGTELDNNVSYAGIAEAMGAEGVVV---DTQEELGP 540 (588)
T ss_pred HHHHHHH-HH----HhC------------------------CCcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 1111000 00 000 0000 0111 246778899999998754 68999999
Q ss_pred HHHHhhhcC-CCCcEEEEEEeccCCC
Q 004923 343 ILEEVKNTK-TTGPVLIHVVTEKGRG 367 (723)
Q Consensus 343 al~~a~~~~-~~~P~~I~v~T~kg~G 367 (723)
+++++.+.. .++|++|+|.+.+..|
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 999886531 3589999999986654
No 145
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.00 E-value=1.4e-09 Score=115.94 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=90.1
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
|.+|.++|+|+|+++|.. +++|||+.|||++ +.| ...|.+|.+.+.|+++||.||+.+.+-. .+..++.+.|
T Consensus 70 g~mG~alpaAiGaklA~p----d~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~-gQ~s~t~~~g 142 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTK-GQASPTTPEG 142 (301)
T ss_pred hhhccHHHHHHHHHHHCC----CCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhccc-CcccCCcCCC
Confidence 677899999999999875 8899999999997 444 4569999999999999999997433211 0100000011
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
... .+...| ...-..|+..+++++|+.++....-.+.++|.++++
T Consensus 143 ~~~---------------------~~~~~g--------------~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~ 187 (301)
T PRK05778 143 SKT---------------------KTAPYG--------------NIEPPIDPCALALAAGATFVARSFAGDVKQLVELIK 187 (301)
T ss_pred ccc---------------------ccccCC--------------CcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHH
Confidence 000 000000 000124566789999998764333478999999999
Q ss_pred HhhhcCCCCcEEEEEEec
Q 004923 346 EVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T~ 363 (723)
++.. .++|.+|+|.+.
T Consensus 188 ~A~~--~~GpalIeV~~~ 203 (301)
T PRK05778 188 KAIS--HKGFAFIDVLSP 203 (301)
T ss_pred HHHh--CCCCEEEEEcCC
Confidence 9986 589999998765
No 146
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.00 E-value=1.2e-09 Score=115.09 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=92.3
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
|.+|.++|+|+|+++|++ +++|||++|||++.. +-...+.+|.+++.|+++||.||+.+.+ |..+..+..+.|.
T Consensus 60 ~~mG~alp~AiGaklA~p----d~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~-t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKATNP----ELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGL-TKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhh-hcceecCCCCCCc
Confidence 447889999999988854 899999999999762 1146799999999999999999973222 1111111111110
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~ 346 (723)
-.. +...| ......|+..+++++|..++...+-.++++|.+++++
T Consensus 134 ~~~---------------------~~p~g--------------~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KTP---------------------TQPWG--------------VFEEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred ccc---------------------cCCCC--------------ccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 000 00000 0001235667899999998875555799999999999
Q ss_pred hhhcCCCCcEEEEEEecc
Q 004923 347 VKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 347 a~~~~~~~P~~I~v~T~k 364 (723)
+.+ .++|++|++.+.-
T Consensus 179 Al~--~~Gp~lIeV~~pC 194 (280)
T PRK11869 179 AIK--HKGLAIVDIFQPC 194 (280)
T ss_pred HHh--CCCCEEEEEECCC
Confidence 987 5899999998763
No 147
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.99 E-value=1.5e-09 Score=112.56 Aligned_cols=140 Identities=23% Similarity=0.320 Sum_probs=90.4
Q ss_pred CCcccchhhHHHHHHHHHhhh-cCCCCeEEEEEcCCccc-ccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDL-KGRKNNVVAVIGDGAMT-AGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~-~g~~~~vv~viGDGa~~-~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~ 262 (723)
+.|.+|+++++|+|.++|..- ..++++|||+.|||++. .|+ ..+.++..+++|+++||.||+.+.. +..+.....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~--~~l~ta~~~~l~i~ivVlNN~~yg~-~~~q~~~~~ 138 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGF--GALSHSLFRGEDITVIVLDNEVYSN-TGGQRSGAT 138 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccH--HHHHHHHHcCCCeEEEEECCccccC-CCCCCCCCC
Confidence 459999999999999888211 12478999999999874 342 3467777889999999999984331 110100000
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 263 ~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
..+.. + ........+-.+|+.++++++|+.++..+.=.+.++|.+
T Consensus 139 ~~g~~-----------------------~------------~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~ 183 (237)
T cd02018 139 PLGAD-----------------------S------------KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLK 183 (237)
T ss_pred cCCCc-----------------------c------------cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHH
Confidence 00000 0 000000111235677889999999886333367999999
Q ss_pred HHHHhhhcCCCCcEEEEEEec
Q 004923 343 ILEEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~ 363 (723)
+|+++.+ +.++|++|++.+.
T Consensus 184 al~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 184 VVKEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHHHh-cCCCCEEEEEeCC
Confidence 9999874 1478999999965
No 148
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.98 E-value=2e-09 Score=113.44 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=93.2
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDG-a~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
.|.+|.++|+|+|+++|++ +.+||+++||| ++..| ...|.+|.+.+.|+++||.||+.+.+ |..+..+..+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm-tggQ~s~~t~~ 130 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL-TTGQASPTTPR 130 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh-hcccccCCCCC
Confidence 3667899999999999965 88999999999 68855 46799999999999999999973222 11111111111
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
|... .+...|.. + ...|+..+++++|..++......+.+++.+++
T Consensus 131 g~~t---------------------~~t~~g~~-~-------------~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l 175 (279)
T PRK11866 131 GVKT---------------------KTTPDGNI-E-------------EPFNPIALALAAGATFVARGFSGDVKHLKEII 175 (279)
T ss_pred Ccee---------------------eccCCCCC-C-------------CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHH
Confidence 1100 00000000 0 00145567899999888776668999999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 004923 345 EEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~ 363 (723)
+++.+ .++|.+|++.+.
T Consensus 176 ~~Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 176 KEAIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99987 689999999865
No 149
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.98 E-value=4.6e-08 Score=109.63 Aligned_cols=241 Identities=15% Similarity=0.164 Sum_probs=158.5
Q ss_pred HHHHHhcCCCEEEEeccCCCCcCh------h----------hhhhhCCC----ceeeccccHHHHHHHHHHHHhc--CCe
Q 004923 409 LIAEAEVDKDVVAIHAAMGGGTGL------N----------LFLRRFPT----RCFDVGIAEQHAVTFAAGLACE--GLK 466 (723)
Q Consensus 409 L~~~~~~d~~iv~i~aD~~gs~~l------~----------~f~~~~p~----R~id~GIaE~~~v~~AaGlA~~--G~~ 466 (723)
+..++++.-.|.+-+.|+..+|=- . .+..-.|+ -+-|..++|.+.+|+-.|++++ ...
T Consensus 659 FgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaL 738 (1017)
T KOG0450|consen 659 FGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNAL 738 (1017)
T ss_pred HHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCce
Confidence 345667777888999999876511 0 11111233 4679999999999999999998 466
Q ss_pred eEEee-hhHHH---HHHHHHHHHHhh----cCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhh-----------------
Q 004923 467 PFCAI-YSSFM---QRAYDQVVHDVD----LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA----------------- 521 (723)
Q Consensus 467 p~~~t-~s~Fl---~ra~dqi~~~~a----~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~----------------- 521 (723)
.+++. |.+|. |..+||++.. + ..+.-+++..+| |+-| .||-|+...--.|+.
T Consensus 739 VlWEAQFGDFaNtAQ~IiDQFIss-GqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~ 815 (1017)
T KOG0450|consen 739 VLWEAQFGDFANTAQCIIDQFISS-GQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQ 815 (1017)
T ss_pred EEeehhhccccccchhhHHhHhcc-chhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHH
Confidence 67765 88885 8889997632 2 234556776666 4334 589998643222322
Q ss_pred ---cCCCcEEEccCCHHHHHHHHHHHHHh-CCCCEEEEecCCCCccc----cCCCCCCCCCcc-----cCceEEeeeCCc
Q 004923 522 ---CLPNMVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGIGV----ELPPGNKGIPLE-----VGKGRILIEGER 588 (723)
Q Consensus 522 ---~iP~l~V~~Psd~~E~~~~l~~A~~~-~~~P~~ir~~r~~~~~~----~~p~~~~~~~~~-----~gk~~vl~eG~d 588 (723)
.--||+|+.+++|...+++++.-+-+ -.+|.+++.||..+..- .+.+..++..|. -|+...-.|+-+
T Consensus 816 ~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vk 895 (1017)
T KOG0450|consen 816 RQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVK 895 (1017)
T ss_pred HHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhce
Confidence 12379999999999999999977653 45799999998754211 111111111111 122222224446
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC---CEEEEEcCCC-CCChH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGS-IGGFG 653 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~---~~vvvvEe~~-~gG~g 653 (723)
-+|+++|-......++.+.... --++.+..+-.|-|||.+.+++.++++ ..+..-||+. .|.|.
T Consensus 896 rlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 896 RLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred EEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 6788999887766655554321 136788899999999999998888665 5778889997 46654
No 150
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.96 E-value=2.3e-09 Score=124.13 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=91.3
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+++|. ++++|+++|||+++ |...+|.+|.++++|+++||.||+.+.+
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~------------ 461 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEM------------ 461 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccce------------
Confidence 4589999999999999985 35678899999999 7777899999999999999999974221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+. ..++ ...| .++-..++.+++++||.++... ++.++|..++
T Consensus 462 --~~-~~~~---~~~~-----------------------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 503 (535)
T TIGR03394 462 --LR-VFQP---ESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELAAAL 503 (535)
T ss_pred --ee-hhcc---CCCc-----------------------------ccCCCCCHHHHHHHcCCCceEe---CCHHHHHHHH
Confidence 10 0000 0000 0111356677899999988755 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+. .++|++|++.+.+..
T Consensus 504 ~~a~~~-~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 504 DKAFAT-RGRFQLIEAMLPRGV 524 (535)
T ss_pred HHHHhc-CCCeEEEEEECCccc
Confidence 988752 356899999986543
No 151
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.94 E-value=2.4e-09 Score=112.98 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
+.+|.++|+|+|+++|.. +++|||++|||+++. +.-..+.+|.++++|+++||.||+.+.+ |..+..+..+.+.
T Consensus 68 ~~~G~alPaAiGaklA~P----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-t~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLANP----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-TNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHCC----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-ceecccCCCCCCc
Confidence 366889999999999875 899999999999863 2223466789999999999999974221 1101000000000
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~ 346 (723)
. ..+...+. .....|+.++++++|+.++....=.+.++|.+++++
T Consensus 142 ~---------------------~~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 W---------------------TVTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred e---------------------eeeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 0 00000000 000124577799999987521122689999999999
Q ss_pred hhhcCCCCcEEEEEEeccC
Q 004923 347 VKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 347 a~~~~~~~P~~I~v~T~kg 365 (723)
+.+ .++|++|+|.+.--
T Consensus 187 Al~--~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 187 GFS--HKGFSFFDVFSNCH 203 (277)
T ss_pred HHh--CCCCEEEEEcCCCC
Confidence 987 58999999987643
No 152
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.90 E-value=5.6e-09 Score=110.82 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa-~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
|.+|.++|+|+|+++|++ +++|||++|||+ ++.| ...+.+|.+++.|+++||.||+.+.+-. .+..+..+.+
T Consensus 69 g~mG~alpaAiGaklA~P----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~-~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLANP----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTK-GQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHhCC----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhc-CccCCCCCCC
Confidence 778999999999999865 899999999995 7755 4569999999999999999997322211 0111110011
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
... .+...|. .. ...++.++++++|..++....-.+.++|.++++
T Consensus 142 ~~~---------------------~~~~~g~-~~-------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~ 186 (286)
T PRK11867 142 FVT---------------------KTTPYGS-IE-------------PPFNPVELALGAGATFVARGFDSDVKQLTELIK 186 (286)
T ss_pred ccc---------------------ccccCCC-CC-------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHH
Confidence 000 0000000 00 012345568889988775434467999999999
Q ss_pred HhhhcCCCCcEEEEEEecc
Q 004923 346 EVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T~k 364 (723)
++.+ .++|++|++.+.-
T Consensus 187 ~Al~--~~Gp~lIev~~~C 203 (286)
T PRK11867 187 AAIN--HKGFSFVEILQPC 203 (286)
T ss_pred HHHh--CCCCEEEEEeCCC
Confidence 9986 5899999998753
No 153
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.90 E-value=2.1e-08 Score=106.37 Aligned_cols=152 Identities=20% Similarity=0.331 Sum_probs=105.9
Q ss_pred ccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCC
Q 004923 183 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 261 (723)
Q Consensus 183 ~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~ 261 (723)
++..+..|.+++.|.|++.|.+.++++.+|||+.|||.+ ..| .+++..|...+.|+++||.||+-+ .-|.-|..++
T Consensus 65 ~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y-~nTGgQ~S~~ 141 (299)
T PRK11865 65 PWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAY-MNTGIQRSGS 141 (299)
T ss_pred ccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccc-cCCCCCCCCC
Confidence 345567778899999999998877778899999999988 445 389999999999999999999832 2343444444
Q ss_pred CCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchH-HHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHH
Q 004923 262 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMH-ELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 340 (723)
Q Consensus 262 ~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~-~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l 340 (723)
.+.|+..++ ...|.... +... .-|...++.++|..|+..++-.|+.++
T Consensus 142 Tp~Ga~t~t---------------------sp~Gk~~~G~~~~----------kkd~~~Ia~a~g~~YVA~~~~~~~~~l 190 (299)
T PRK11865 142 TPFGASTTT---------------------SPAGKYSRGEDRP----------KKNMPLIMAAHGIPYVATASIGYPEDF 190 (299)
T ss_pred CCCCccccc---------------------CCCCcccCCCCCC----------CCCHHHHHHHcCCCEEEEEeCCCHHHH
Confidence 455543111 00111000 0000 012234577889999888887899999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEec--cCCCcch
Q 004923 341 VAILEEVKNTKTTGPVLIHVVTE--KGRGYPY 370 (723)
Q Consensus 341 ~~al~~a~~~~~~~P~~I~v~T~--kg~G~~~ 370 (723)
.+++++|.+ .+||.+||+.+. .|+|+.+
T Consensus 191 ~~~i~~A~~--~~Gps~I~v~sPC~~~~~~~~ 220 (299)
T PRK11865 191 MEKVKKAKE--VEGPAYIQVLQPCPTGWGFPP 220 (299)
T ss_pred HHHHHHHHh--CCCCEEEEEECCCCCCCCCCH
Confidence 999999987 579999999875 3555544
No 154
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.86 E-value=6.3e-09 Score=110.03 Aligned_cols=134 Identities=20% Similarity=0.252 Sum_probs=84.6
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
|.+|.++|+|+|+++|+. +++|||++|||++. ++....+.+|.+++.|+++||.||+.+.+-. .+..+..+.|.
T Consensus 53 t~mG~alPaAiGaklA~P----d~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~-gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP----HLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTK-GQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhh-cccccCccCCc
Confidence 446889999999999865 89999999999963 3445679999999999999999997322210 01001111110
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~ 346 (723)
-. .. ...|.. ...+++++.++++++|+.....+ .+.++|.+++++
T Consensus 127 ~~------~~---------------~~~g~~------------~~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 KT------KS---------------LPYPNI------------QDPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKE 171 (287)
T ss_pred ce------ee---------------cccCcc------------CCCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHH
Confidence 00 00 000000 00011223344667776544322 689999999999
Q ss_pred hhhcCCCCcEEEEEEec
Q 004923 347 VKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 347 a~~~~~~~P~~I~v~T~ 363 (723)
+.+ .++|++|++.+.
T Consensus 172 Al~--~~GpslIeV~~p 186 (287)
T TIGR02177 172 AIN--HKGYALVDILQP 186 (287)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 986 689999999865
No 155
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.83 E-value=3.2e-07 Score=112.39 Aligned_cols=252 Identities=20% Similarity=0.174 Sum_probs=160.5
Q ss_pred ceeeccccHHHHHHHHHHHH---------hcCCeeEEeehhHHHHHHHHHHHHHhhcCCC----C-EEEEeeCCCCCCCC
Q 004923 442 RCFDVGIAEQHAVTFAAGLA---------CEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL----P-VRFAMDRAGLVGAD 507 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA---------~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~l----p-v~~v~~~~G~~G~d 507 (723)
-+++.|++|--++.++.|.+ +.|.+.+++.=.+.+.++-|.+++. ++... - |++++|..|....
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~SS- 152 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCVSS- 152 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCccC-
Confidence 68999999999999999999 5666667777788899999988643 44333 2 4444455554221
Q ss_pred CCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC------Cc--c----ccCCCCCCC
Q 004923 508 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN------GI--G----VELPPGNKG 572 (723)
Q Consensus 508 G~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~------~~--~----~~~p~~~~~ 572 (723)
-+-|+.+-..... +|-|+.|+|++|++++.+.+++. ..-|+.++..... +. . ...|. .
T Consensus 153 -q~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~ 225 (1159)
T PRK13030 153 -SMPHQSDFALIAW---HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPE---D 225 (1159)
T ss_pred -cCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---c
Confidence 2333333333444 45599999999999999999874 4569998764321 00 0 00111 0
Q ss_pred CCccc----Cce-----------------------------EEe--eeCCcEEEEEecchHHHHHHHHHHHHhCC-----
Q 004923 573 IPLEV----GKG-----------------------------RIL--IEGERVALLGYGTAVQSCLAASALLESNG----- 612 (723)
Q Consensus 573 ~~~~~----gk~-----------------------------~vl--~eG~dv~Iva~Gs~v~~al~Aa~~L~~~G----- 612 (723)
+..+. .++ ++. .++.++.||++|.....++||.+.|...+
T Consensus 226 f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~ 305 (1159)
T PRK13030 226 FTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRA 305 (1159)
T ss_pred cCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccc
Confidence 10001 000 111 12367999999999999999998875433
Q ss_pred CceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHH
Q 004923 613 LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLA 692 (723)
Q Consensus 613 i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~ 692 (723)
+.++|+.+-..+|||.+.+++.++.++.|+||||... =+-..+.+.+..... ..+..-+|..|. .|. .++.
T Consensus 306 lgirilKvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~---~G~--pllp 376 (1159)
T PRK13030 306 AGIRIYKVGLSWPLEPTRLREFADGLEEILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDE---DGA--PLLS 376 (1159)
T ss_pred cCccEEEeCCccCCCHHHHHHHHhcCCEEEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECC---CCC--cCCC
Confidence 2467888888899999999999999999999999863 233344444443321 112222333221 111 1222
Q ss_pred HcC-CCHHHHHHHHHHHHhc
Q 004923 693 QAG-LTPSHIAATVFNILGQ 711 (723)
Q Consensus 693 ~~g-l~~e~I~~~i~~ll~~ 711 (723)
..| |+++.|.+.+.+.++.
T Consensus 377 ~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 377 ELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred CcCCcCHHHHHHHHHHHHhc
Confidence 233 8999999999777654
No 156
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.80 E-value=1.4e-08 Score=118.96 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=90.5
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
.|.+|.++|+|+|+++|.. +++||+++|||++...- ..+|.+|.+++.|+++||.||+.+.+ +..+. ....+
T Consensus 402 ~~~mG~~~~~AiGa~~a~p----~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~-~~~q~--~~~~~ 473 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAGE----KQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAM-TGHQP--NPGTG 473 (595)
T ss_pred eeccCchHHHHhhhhhcCC----CCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceec-cCCCC--CCCCC
Confidence 4789999999999988864 78999999999998311 35689999999999999999974222 10000 00000
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
. . ..+ ...-..|+..+++++|+.++.+.+-.+++++.++++
T Consensus 474 -~-------------~-----------~~~--------------~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~ 514 (595)
T TIGR03336 474 -V-------------T-----------GMG--------------EATKEISIEELCRASGVEFVEVVDPLNVKETIEVFK 514 (595)
T ss_pred -C-------------C-----------CCC--------------CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHH
Confidence 0 0 000 001124556778999999987777788899999999
Q ss_pred HhhhcCCCCcEEEEEEe
Q 004923 346 EVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T 362 (723)
++.+ .++|++|++..
T Consensus 515 ~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 515 AALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHh--cCCCEEEEEcc
Confidence 9986 57999999864
No 157
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.78 E-value=5.2e-07 Score=105.80 Aligned_cols=206 Identities=18% Similarity=0.195 Sum_probs=135.7
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEE--e-ehhHHH---HHHHHHHHHHhh---cCCCCEEEEeeCCCCCCCCCCCCC
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFC--A-IYSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHC 512 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~--~-t~s~Fl---~ra~dqi~~~~a---~~~lpv~~v~~~~G~~G~dG~tH~ 512 (723)
..+|.+++|.+++++=-|.+..--+.++ + -|.+|. |..+||.+..-- .....+++...|+. - ..||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy-E-GQGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY-E-GQGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCC-C-CCCCcCc
Confidence 3689999999999999999998544333 3 378886 677888653211 13455666666642 2 3689999
Q ss_pred chhhHhhhhcC--CCcEEEccCCHHHHHHHHHHHHH-hCCCCEEEEecCCCCccccCCCCCCCCCcccCceE-EeeeC--
Q 004923 513 GSFDVTFMACL--PNMVVMAPSDEAELFHMVATAAA-IDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIEG-- 586 (723)
Q Consensus 513 ~~~d~a~~~~i--P~l~V~~Psd~~E~~~~l~~A~~-~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~-vl~eG-- 586 (723)
....-.++.-. -||+|..|+++...+.+++.-+. ...+|.++..|+..+....... .-..+.-++.. ++.+.
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S--~~~el~~~~F~~vl~d~~~ 783 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS--SLEELTEGTFQPVLEDIDE 783 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC--chhhhchhhhhhhhccccc
Confidence 87665665543 38999999999999999986544 4567999988886532110000 00111112221 22221
Q ss_pred ----CcEEEEEecchHHHHHHHHHHHHhCC-CceEEeecCccccccHHHHHHHhcCC----CEEEEEcCCC-CCChHH
Q 004923 587 ----ERVALLGYGTAVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGS-IGGFGS 654 (723)
Q Consensus 587 ----~dv~Iva~Gs~v~~al~Aa~~L~~~G-i~v~VId~~~ikP~d~~~i~~~~~~~----~~vvvvEe~~-~gG~g~ 654 (723)
-.-+++|.|-+.....+.. ++.| .++.++.+..+.|||.+.+.+.+.+. ..+..-||.. .|.|.-
T Consensus 784 ~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~ 858 (906)
T COG0567 784 LDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYY 858 (906)
T ss_pred cccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHH
Confidence 2456778887776555444 3444 47889999999999999998877654 4677888876 577763
No 158
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.74 E-value=1.5e-08 Score=111.72 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=85.1
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
-||.|+++|+|+|.++|.+ +++|+.++|||++| +.-+.+.+--+|+ .|+|||+||+|+ ++....+ |+.
T Consensus 410 WGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GY-TIEr~IH-g~~--- 478 (557)
T COG3961 410 WGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGY-TIERAIH-GPT--- 478 (557)
T ss_pred hhhcccccHhhhhhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCc-EEEehhc-CCC---
Confidence 3999999999999999987 89999999999999 7777799998888 677777777774 5432221 222
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEe-cCCCCHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP-VDGHNVDDLVAI 343 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~-vDGhd~~~l~~a 343 (723)
..|+++..|. +.++.++||..-... ..-..-+++..+
T Consensus 479 -------------~~YNdI~~Wd-----------------------------~~~l~~afg~~~~~~~~~~~~~~~l~~~ 516 (557)
T COG3961 479 -------------APYNDIQSWD-----------------------------YTALPEAFGAKNGEAKFRATTGEELALA 516 (557)
T ss_pred -------------cCcccccccc-----------------------------hhhhhhhcCCCCceEEEeecChHHHHHH
Confidence 2344444332 123466666431101 111344677778
Q ss_pred HHHhhhcCCCCcEEEEEEecc
Q 004923 344 LEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~k 364 (723)
++.+... .+++.+|||+..+
T Consensus 517 ~~~~~~~-~~~i~lIEv~lp~ 536 (557)
T COG3961 517 LDVAFAN-NDRIRLIEVMLPV 536 (557)
T ss_pred HHHHhcC-CCceEEEEEecCc
Confidence 8877753 5789999998654
No 159
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.73 E-value=4.1e-07 Score=111.20 Aligned_cols=249 Identities=20% Similarity=0.182 Sum_probs=160.8
Q ss_pred ceeeccccHHHHHHHH---------HHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCC----C-EEEEeeCCCCCCCC
Q 004923 442 RCFDVGIAEQHAVTFA---------AGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL----P-VRFAMDRAGLVGAD 507 (723)
Q Consensus 442 R~id~GIaE~~~v~~A---------aGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~l----p-v~~v~~~~G~~G~d 507 (723)
-++.-|++|--++.++ .|.+..|.+.+++.=.+.+.++-|.++|. ++... - |++++|..|....
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~SS- 160 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKSS- 160 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCccc-
Confidence 6899999999999999 66688899999999899999999988743 44332 2 4444455553221
Q ss_pred CCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCCC---------c---cccCCCCCCC
Q 004923 508 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNG---------I---GVELPPGNKG 572 (723)
Q Consensus 508 G~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~~---------~---~~~~p~~~~~ 572 (723)
.+-|+.+-..... +|-|+.|+|++|++++.+.++.. ..-||.++...... + ....|. +
T Consensus 161 -q~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~ 233 (1165)
T PRK09193 161 -TLPHQSEHAFKAA---GMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE---D 233 (1165)
T ss_pred -cchhhhHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---c
Confidence 2233333333344 45599999999999999999874 45599987643210 0 001111 0
Q ss_pred CCcccC----ce-----------------------------EEeee--CCcEEEEEecchHHHHHHHHHHHHhCCCc---
Q 004923 573 IPLEVG----KG-----------------------------RILIE--GERVALLGYGTAVQSCLAASALLESNGLR--- 614 (723)
Q Consensus 573 ~~~~~g----k~-----------------------------~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~--- 614 (723)
+..+.+ ++ ++... +.++-||++|.....+++|.+.| |++
T Consensus 234 f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~ 310 (1165)
T PRK09193 234 FEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEET 310 (1165)
T ss_pred ccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhh
Confidence 111111 11 11111 35799999999999988887765 444
Q ss_pred -----eEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHH
Q 004923 615 -----LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPAD 689 (723)
Q Consensus 615 -----v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~e 689 (723)
++|+.+-+.+|||.+.+++.++..+.|+||||-.. =+-..|.+.+-..+. ..+...+|-.| +.|. .
T Consensus 311 ~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~---~~g~--~ 381 (1165)
T PRK09193 311 AARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFD---PQGN--W 381 (1165)
T ss_pred hcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeC---CCCC--c
Confidence 88999999999999999999999999999999753 334445444433221 12112233222 1121 1
Q ss_pred HHHHcC-CCHHHHHHHHHHHHhc
Q 004923 690 QLAQAG-LTPSHIAATVFNILGQ 711 (723)
Q Consensus 690 l~~~~g-l~~e~I~~~i~~ll~~ 711 (723)
++-..| |+++.|.+.+.+.++.
T Consensus 382 llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 382 LLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred cCCCcCCcCHHHHHHHHHHHhhh
Confidence 233333 8999999998777654
No 160
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.66 E-value=6.8e-08 Score=124.59 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCcccch--hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhc--CCCEEEEEECCCCCCcCccCCCCC
Q 004923 185 GTGHSST--SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL--DSDMIVILNDNKQVSLPTATLDGP 260 (723)
Q Consensus 185 g~G~~G~--~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~--~~nli~Il~dN~~~s~~t~~~~g~ 260 (723)
+.|.+|. ++|.|+|+++|. +++|+|++|||+++ +...+|.+|..+ ++|+++||.||+...+
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi-------- 821 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAI-------- 821 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHh--------
Confidence 4588888 599999999885 67899999999999 666789999874 8999999988873111
Q ss_pred CCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHH
Q 004923 261 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 340 (723)
Q Consensus 261 ~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l 340 (723)
+ +.+...+.. .+.. .+.+......+++..+.++||+.+..+ .+.++|
T Consensus 822 ------~-~~l~~~~~~--------------------~~~~---~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL 868 (1655)
T PLN02980 822 ------F-SLLPIAKRT--------------------EPRV---LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSEL 868 (1655)
T ss_pred ------h-hcCccCCCC--------------------cchh---HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHH
Confidence 0 000000000 0000 001110012367788899999999855 789999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccCC
Q 004923 341 VAILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 341 ~~al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
..+++++.+ .++|++|+|.|.+-.
T Consensus 869 ~~aL~~a~~--~~~p~lIEV~t~~~~ 892 (1655)
T PLN02980 869 EDALFTSQV--EQMDCVVEVESSIDA 892 (1655)
T ss_pred HHHHHHhhc--cCCCEEEEEecChhh
Confidence 999998876 589999999997543
No 161
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.63 E-value=6e-07 Score=86.75 Aligned_cols=144 Identities=14% Similarity=0.190 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCC-CEEEEeccCCCCcChhhhhh---h---------------CCCceeeccccHHHHHHHHHHHHhc
Q 004923 403 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLR---R---------------FPTRCFDVGIAEQHAVTFAAGLACE 463 (723)
Q Consensus 403 ~~~~~aL~~~~~~d~-~iv~i~aD~~gs~~l~~f~~---~---------------~p~R~id~GIaE~~~v~~AaGlA~~ 463 (723)
.++++.|.++++.+| ++.++++|...|+.|+...+ + -+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888776 79999999998888743221 1 0245566779999999999999999
Q ss_pred CCeeEEeehhHHH---HHHHHHHHHHhh-------cCCCC-EEEEeeCCCC-CCCCCCCCCchhhHhhh-hcCCC-cEEE
Q 004923 464 GLKPFCAIYSSFM---QRAYDQVVHDVD-------LQKLP-VRFAMDRAGL-VGADGPTHCGSFDVTFM-ACLPN-MVVM 529 (723)
Q Consensus 464 G~~p~~~t~s~Fl---~ra~dqi~~~~a-------~~~lp-v~~v~~~~G~-~G~dG~tH~~~~d~a~~-~~iP~-l~V~ 529 (723)
|...++++|..|+ .-++.|-...+- ....| +.++.++-.- .+.+|.|||...=+..+ ...|+ ++||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999999996 344554322211 12334 3333333232 47899999965444333 33444 6799
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004923 530 APSDEAELFHMVATAAA 546 (723)
Q Consensus 530 ~Psd~~E~~~~l~~A~~ 546 (723)
.|.|++.+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999999975
No 162
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.62 E-value=2.2e-06 Score=104.81 Aligned_cols=254 Identities=19% Similarity=0.119 Sum_probs=156.3
Q ss_pred ceeeccccHHHHHHHHHH---------HHhcCCeeEEeehhHHHHHHHHHHHHHh-hcCCC--C-EEEEeeCCCCCCCCC
Q 004923 442 RCFDVGIAEQHAVTFAAG---------LACEGLKPFCAIYSSFMQRAYDQVVHDV-DLQKL--P-VRFAMDRAGLVGADG 508 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaG---------lA~~G~~p~~~t~s~Fl~ra~dqi~~~~-a~~~l--p-v~~v~~~~G~~G~dG 508 (723)
-++.-|++|--++++..| .+..|.+.+++.=.+.+.++-|.++|.. ++... - |++++|..|....
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS-- 163 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS-- 163 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc--
Confidence 678999999999555544 4456888888888888999999987543 13322 2 4444455554221
Q ss_pred CCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCCCc---cc---------cCCCCCCCC
Q 004923 509 PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNGI---GV---------ELPPGNKGI 573 (723)
Q Consensus 509 ~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~~~---~~---------~~p~~~~~~ 573 (723)
.+-|+.+-..... +|-|+.|+|++|++++...++.. ..-|+.++....... .+ ..|. ++
T Consensus 164 q~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~---~f 237 (1186)
T PRK13029 164 SVAHQSDHTFIAW---GIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD---DF 237 (1186)
T ss_pred cCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc---cc
Confidence 2233333333333 45599999999999999999874 455999876532210 00 1111 01
Q ss_pred CcccC----ce-----------------------------EEe--eeCCcEEEEEecchHHHHHHHHHHHHh-----CCC
Q 004923 574 PLEVG----KG-----------------------------RIL--IEGERVALLGYGTAVQSCLAASALLES-----NGL 613 (723)
Q Consensus 574 ~~~~g----k~-----------------------------~vl--~eG~dv~Iva~Gs~v~~al~Aa~~L~~-----~Gi 613 (723)
..+.+ ++ ++. .++.++-||+.|.....+++|.+.|.- +-+
T Consensus 238 ~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~ 317 (1186)
T PRK13029 238 VLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAAL 317 (1186)
T ss_pred cCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhcccc
Confidence 00110 00 111 123679999999999999988776521 122
Q ss_pred ceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCC---ccc-----cCC
Q 004923 614 RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPD---RYI-----DHG 685 (723)
Q Consensus 614 ~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d---~~~-----~~g 685 (723)
.++|+.+-+.+|||.+.+++.++..+.|+||||... =+-.+|.+.+...+. ..+...+|-.| .-+ +.|
T Consensus 318 gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~~~g 393 (1186)
T PRK13029 318 GIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSVPAG 393 (1186)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCCeeEeccccccccccccccccc
Confidence 488999999999999999999999999999999753 344455554433221 12112334322 000 111
Q ss_pred CHHHHHHHcC-CCHHHHHHHHHHHH
Q 004923 686 SPADQLAQAG-LTPSHIAATVFNIL 709 (723)
Q Consensus 686 ~~~el~~~~g-l~~e~I~~~i~~ll 709 (723)
. .++-..| |+++.|.+.+.+.+
T Consensus 394 ~--~llp~~gEL~p~~va~~l~~~l 416 (1186)
T PRK13029 394 R--WLLPAHAELSPALIAKAIARRL 416 (1186)
T ss_pred C--CCCCcccCcCHHHHHHHHHHHH
Confidence 1 1333333 89999999987776
No 163
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.60 E-value=9e-07 Score=94.90 Aligned_cols=189 Identities=13% Similarity=0.169 Sum_probs=125.3
Q ss_pred CCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhH
Q 004923 115 HLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSIS 194 (723)
Q Consensus 115 H~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls 194 (723)
.+|...---+..-.|-.+-++-.|++|.++|-..+-+...+ +.++++... -. +.+ |.|.+|.++|
T Consensus 467 tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAq-----fy~w~kP~~--~~-----tSG---GLGtMGfGLP 531 (675)
T KOG4166|consen 467 TPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQ-----FYNWKKPRQ--WL-----TSG---GLGTMGFGLP 531 (675)
T ss_pred CCccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHH-----HhcccCccc--ee-----ecC---CccccccCcc
Confidence 44444444444444544455557899998886555443322 112211110 01 111 6789999999
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhh
Q 004923 195 AGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRL 274 (723)
Q Consensus 195 ~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~ 274 (723)
+|+|..+|.. +..|+-+-||+++. |....|.++...++|+-+++.||..+ |..-+|
T Consensus 532 AAIGAsVA~P----~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq--------------GMVtQW---- 587 (675)
T KOG4166|consen 532 AAIGASVANP----DAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ--------------GMVTQW---- 587 (675)
T ss_pred hhhcccccCc----ccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh--------------hhHHHH----
Confidence 9999998875 99999999999999 77777999999999999999999732 112111
Q ss_pred hcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCC
Q 004923 275 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTG 354 (723)
Q Consensus 275 ~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~ 354 (723)
+++..+-+..-.+-.+|++-.+++++|+...++ ..-++|.+.+++... ++|
T Consensus 588 ------------------------q~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkG 638 (675)
T KOG4166|consen 588 ------------------------QDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKG 638 (675)
T ss_pred ------------------------HHHHHHhhhccccccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCC
Confidence 222221111112233578888999999998765 567889999998876 789
Q ss_pred cEEEEEEeccCCCcchh
Q 004923 355 PVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 355 P~~I~v~T~kg~G~~~~ 371 (723)
|+++++...+-..+.|+
T Consensus 639 PvLleV~v~~kehVlPm 655 (675)
T KOG4166|consen 639 PVLLEVIVPHKEHVLPM 655 (675)
T ss_pred CeEEEEEccCccceeee
Confidence 99999998765554443
No 164
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.53 E-value=2.3e-07 Score=95.51 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=84.2
Q ss_pred eeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCCCchhhHhhhh
Q 004923 443 CFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMA 521 (723)
Q Consensus 443 ~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH~~~~d~a~~~ 521 (723)
.+--.-+|+++++++.|+|++|.|.++.|.+..+..+.|.+ ..++..++|++++. .|+| .+..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g-~~~g~~~~~~q~D~~~~~ 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAG-PSPGLSTQPEQDDLMAAR 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB----SSSB--SB-SHHHHHTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCC-CCCCCcCcCChhHHHHHH
Confidence 56677899999999999999999999999999988888886 46789999988877 5655 344478999999987777
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004923 522 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (723)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~ 559 (723)
. -++.++.|+|++|+.++...|++. ...|++++.+..
T Consensus 116 d-~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 116 D-SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp T-SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred h-cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 4 588899999999999999999874 556999887654
No 165
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.49 E-value=6.4e-07 Score=97.22 Aligned_cols=137 Identities=21% Similarity=0.280 Sum_probs=101.5
Q ss_pred CcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCC
Q 004923 180 EYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDG 259 (723)
Q Consensus 180 ~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g 259 (723)
-|-.+|..-+|+-|+-++|.-+ ..+++-|++++|||+.. |.+-.|.++..++..+++++.||..+
T Consensus 437 YH~EYgfSCMGYEiaG~lG~K~----a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~Gy--------- 501 (617)
T COG3962 437 YHLEYGFSCMGYEIAGGLGAKA----AEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGY--------- 501 (617)
T ss_pred eeeeeccccccccccccccccc----CCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCc---------
Confidence 4556788888888998888764 45589999999999999 88888999999999999999999632
Q ss_pred CCCCcchhhHHHhhhh----cChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCC
Q 004923 260 PIPPVGALSSALSRLQ----SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH 335 (723)
Q Consensus 260 ~~~~vg~l~~~l~~~~----~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGh 335 (723)
|.+ ++|| ....++++|..... ..++.-|++.-+++||.....+ +
T Consensus 502 -----GCI----n~LQm~~Gg~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~ 549 (617)
T COG3962 502 -----GCI----NRLQMATGGASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---G 549 (617)
T ss_pred -----chh----hhhhhhcCcchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---C
Confidence 222 1111 11223333332210 2234456777799999987755 7
Q ss_pred CHHHHHHHHHHhhhcCCCCcEEEEEEeccC
Q 004923 336 NVDDLVAILEEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 336 d~~~l~~al~~a~~~~~~~P~~I~v~T~kg 365 (723)
++++|..+|+.+|+ ..++++|+++|.+-
T Consensus 550 ~i~eL~aAL~~Ak~--~~~ttvi~I~t~P~ 577 (617)
T COG3962 550 TIEELEAALADAKA--SDRTTVIVIDTDPK 577 (617)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEecCCc
Confidence 99999999999998 68999999999863
No 166
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.34 E-value=1.8e-05 Score=86.86 Aligned_cols=260 Identities=20% Similarity=0.218 Sum_probs=133.3
Q ss_pred ccccccccccchHHhhhccCCCcc--cccccccccccCCCCCCCCcCCCCCcc-----cccc------CC---HHHHHHH
Q 004923 34 ALFSHFSHKLDNHQIQLKKRPNGV--CASLSERGEYHSQRPPTPLLDTINYPI-----HMKN------LS---IRELKQL 97 (723)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~i~~~~-----~~k~------~~---~~~l~~l 97 (723)
|-+.|.+|-... -+.++...+. +.+.+++++= .-||..+++.+|..-. .|+. -+ .++|.+.
T Consensus 285 arlnwiLhfG~~--Pk~~kd~KfIqvd~n~Eel~~n-~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek 361 (571)
T KOG1185|consen 285 ARLNWILHFGLP--PKWSKDVKFIQVDINPEELGNN-FVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREK 361 (571)
T ss_pred ceeeEEEecCCC--CccCCCceEEEEeCCHHHHhcc-cCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHH
Confidence 445666665554 2233333332 2233444321 2367777766664432 1222 11 3456666
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccC-CC-CcEEEeCCCchHHHHHHHcCChhHhHHHHhcCCCCCCCC
Q 004923 98 ADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFN-AP-KDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTK 175 (723)
Q Consensus 98 a~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~-~p-~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~ 175 (723)
+++=+....++..+.+-- |- .+.+|+.+-. -| +|-|+.+-|--. +-.||. .++ +-.|.
T Consensus 362 ~~~ne~~~~~~~~~~~~p----LN---~~~~~~~vre~L~~~d~ilVsEGant----mdigr~----~l~-----~~~Pr 421 (571)
T KOG1185|consen 362 DKQNEAAVEEKAAKKSTP----LN---YYQVLQTVRELLPNDDTILVSEGANT----MDIGRT----LLP-----PRGPR 421 (571)
T ss_pred HHhhHHHHHHHhhccCCC----Cc---HHHHHHHHHHhcCCCCcEEEecCCcc----hhhhhh----hcc-----CCCcc
Confidence 666666655555433211 22 2333443322 25 788888777222 111210 000 12332
Q ss_pred CCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-CcCc
Q 004923 176 RSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPT 254 (723)
Q Consensus 176 ~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~-s~~t 254 (723)
+. ...+.| |.||-|++.|++.|++ .+++.|+|+-||+++--. ..| +.++.++++|+++|+-||+.+ .+.+
T Consensus 422 ~r-LDaGtf--gTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 422 RR-LDAGTF--GTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred cc-cCCccc--cccccchhHHHHHHhh----CCCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCc
Confidence 21 223333 4455555555555554 479999999999999643 333 889999999999888877532 2111
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCC
Q 004923 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (723)
Q Consensus 255 ~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDG 334 (723)
+ .+.+||+- .....-+.+..+ -+..+..+.++||-+....
T Consensus 493 ---~--------------------~~~~I~e~---~~~~~~p~~~l~-----------~~~rY~~v~ka~G~kG~~v--- 532 (571)
T KOG1185|consen 493 ---D--------------------GWKQISEQ---DPTLDLPPTALL-----------ANTRYDKVAKAFGGKGYFV--- 532 (571)
T ss_pred ---c--------------------cHHHHhhc---CcccCCCccccc-----------ccccHHHHHHHcCCCceee---
Confidence 1 12222210 000000000000 0011223467787665423
Q ss_pred CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCC
Q 004923 335 HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 335 hd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
..+++|..+++++... +++|++|.+...+..
T Consensus 533 ~t~~el~~~l~~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 533 STVEELLAALQQACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred CCHHHHHHHHHHHHhc-CCCCeEEEEEecccc
Confidence 4899999999998763 569999999877654
No 167
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.31 E-value=1.7e-06 Score=95.44 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=52.2
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCC
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 258 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~ 258 (723)
-||.|+++++++|.|+|.. +++|+.++|||++| +....+.++.+|++|.++++.||+.+.+....++
T Consensus 414 wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred EeeccccchhhhhhhhccC----CceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 4899999999999999876 69999999999999 5556699999999665555555543565444443
No 168
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.79 E-value=0.00012 Score=77.99 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=90.8
Q ss_pred chhhHHHHHHHHHhhhcCCCCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhh
Q 004923 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALS 268 (723)
Q Consensus 190 G~~ls~AlG~A~A~~~~g~~~~vv~viGDG-a~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~ 268 (723)
|-+++.|.|+.+|.+ +..||++-||| ++..|. ..+..|...+.++++|+-||. +..-|.-|.+++.+.|+..
T Consensus 73 gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNe-vYgnTggQ~S~tTp~G~~t 145 (294)
T COG1013 73 GRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNE-VYGNTGGQASPTTPKGAKT 145 (294)
T ss_pred CcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCe-ecccCCCccCCCCCCCcee
Confidence 345889999999987 66899999999 666664 578888899999999999998 3344555556666666542
Q ss_pred HHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhh
Q 004923 269 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 348 (723)
Q Consensus 269 ~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~ 348 (723)
+. ...|+... .| -|...+.-++|..|+..+-=-++.++.+.+++|.
T Consensus 146 ~t---------------------~p~Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~ 191 (294)
T COG1013 146 KT---------------------TPYGKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA 191 (294)
T ss_pred ee---------------------cCCCCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH
Confidence 11 00111100 11 1223456788888877664345888888888887
Q ss_pred hcCCCCcEEEEEEec
Q 004923 349 NTKTTGPVLIHVVTE 363 (723)
Q Consensus 349 ~~~~~~P~~I~v~T~ 363 (723)
+ ..||.+|++.+.
T Consensus 192 ~--~~Gps~I~v~sP 204 (294)
T COG1013 192 E--HKGPSFIDVLSP 204 (294)
T ss_pred h--ccCCeEEEEecC
Confidence 6 469999999875
No 169
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.72 E-value=0.00012 Score=83.46 Aligned_cols=124 Identities=26% Similarity=0.409 Sum_probs=82.9
Q ss_pred ccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcch
Q 004923 188 HSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (723)
Q Consensus 188 ~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~-G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~ 266 (723)
.+|.||++|-|++++. .+++|++||||.+-- |. .++-+|.+.+.|++++|-||....+ .|.++.-|.
T Consensus 429 ~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAM-----TGgQp~pg~ 496 (640)
T COG4231 429 MMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAM-----TGGQPHPGT 496 (640)
T ss_pred hccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhc-----cCCCCCCCc
Confidence 3455677776766554 389999999999854 54 5799999999999999999984222 233332211
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHH
Q 004923 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (723)
Q Consensus 267 l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~ 346 (723)
- ++. .+ ++...-.++ .+.+++|..++..+|=+|++++.+++++
T Consensus 497 ~------------~~~-----~g-~~~~~i~ie-------------------e~~r~~Gv~~v~~vdp~~~~~~~~~~ke 539 (640)
T COG4231 497 G------------VAA-----EG-TKSTAIVIE-------------------EVVRAMGVEDVETVDPYDVKELSEAIKE 539 (640)
T ss_pred c------------ccc-----CC-CccceeEhh-------------------HhhhhcCceeeeccCCcchHHHHHHHHH
Confidence 0 000 00 000000111 2257889988988899999999999999
Q ss_pred hhhcCCCCcEEEEEEe
Q 004923 347 VKNTKTTGPVLIHVVT 362 (723)
Q Consensus 347 a~~~~~~~P~~I~v~T 362 (723)
+++ ..+|.+|+++.
T Consensus 540 ale--~~gpsViiak~ 553 (640)
T COG4231 540 ALE--VPGPSVIIAKR 553 (640)
T ss_pred Hhc--CCCceEEEEcC
Confidence 998 57899998764
No 170
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=97.62 E-value=9.3e-05 Score=77.57 Aligned_cols=137 Identities=22% Similarity=0.290 Sum_probs=91.8
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
.|.+|+.+|+|+|.-.|. +++.|+++.||-.++ ...|.+...+.+++|.|.|+-||.+..
T Consensus 418 agplgwtipaalgv~~ad----p~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylg-------------- 477 (592)
T COG3960 418 AGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLG-------------- 477 (592)
T ss_pred cCCcccccchhhceeecC----CCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHH--------------
Confidence 699999999999987665 488999999999999 778999999999999999999997521
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHH-HHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA-AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~-~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+|+.-.++.-.. .-.++ +.++....+=.+.|..+..|++|+..+++ .+++++..+|
T Consensus 478 ----------------lirqaqr~f~mdy---~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~af 535 (592)
T COG3960 478 ----------------LIRQAQRAFDMDY---CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAF 535 (592)
T ss_pred ----------------HHHHHHhcCCccc---eeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhHHH
Confidence 1222222111000 00000 00000001112345567789999998877 5677888888
Q ss_pred HHhhhc--CCCCcEEEEEEecc
Q 004923 345 EEVKNT--KTTGPVLIHVVTEK 364 (723)
Q Consensus 345 ~~a~~~--~~~~P~~I~v~T~k 364 (723)
++++.. +..-|+++++.-++
T Consensus 536 ~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 536 EQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHhcCCCeeeehHHHH
Confidence 877642 35679999987554
No 171
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.61 E-value=0.0022 Score=62.22 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCC--CCCCCchhhH
Q 004923 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGSFDV 517 (723)
Q Consensus 440 p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~d--G~tH~~~~d~ 517 (723)
.-+++.+- .|++++.+|.|.+..|.+.++.+..+.+..+.+.+.+ +...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~-a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYL-AAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHH-HHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 45778876 9999999999999998885566688888888888754 455689999987443322222 2234434333
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEec
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYP 557 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~ 557 (723)
.+++ |-.-++.+.+++|+..++..|+.. .++|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3332 245577899999999999988873 3479998864
No 172
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.00027 Score=79.83 Aligned_cols=60 Identities=33% Similarity=0.542 Sum_probs=53.6
Q ss_pred hhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc
Q 004923 320 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK 383 (723)
Q Consensus 320 lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~ 383 (723)
.|++|||+.+ .|||||+++|.+++.+++.. .++|++|.++|.+|+|.+..+ +..|||.+.
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~pl 259 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAPL 259 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCcc
Confidence 4999999988 89999999999999999853 589999999999999998766 689999973
No 173
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.15 E-value=0.0066 Score=58.44 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=80.3
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCe-eEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLK-PFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~-p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a 518 (723)
-|++.+ ..|..++.+|.|++..+.| +++. +..+.+..+.+.+. .+...++|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 355555 6999999999999999655 3333 35777777777654 567779999999754443222223466555556
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHHhC----CCCEEEEec
Q 004923 519 FMACLPNMVVMAPSDEAELFHMVATAAAID----DRPSCFRYP 557 (723)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~----~~P~~ir~~ 557 (723)
+++.+..+ .+...+++++...+..|++.. .+|+++.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77777555 677789999999999988742 469998765
No 174
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.06 E-value=0.012 Score=66.57 Aligned_cols=195 Identities=22% Similarity=0.314 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCChhHhHHHHhc-CCC
Q 004923 92 RELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQT-DGL 170 (723)
Q Consensus 92 ~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~~~l~~~r~~-~gl 170 (723)
+++..+.+..|..+.+.+. +| ++.-..+...|-... .|.|-+++++. ... .+++.|-+. .+.
T Consensus 351 ~~~~~~~~~~~~~v~~~~~---~~---~~~e~~~a~~l~~~l-p~~~~LFvgNS---mpV-------Rdvd~~~~~~~~~ 413 (566)
T COG1165 351 DEWLALNEKARQAVRDQLA---AE---ALTEAHLAAALADLL-PPQDQLFVGNS---MPV-------RDVDALGQLPAGY 413 (566)
T ss_pred HHHHHHHHHHHHHHHHHhc---cc---CchhhHHHHHHHHhC-CCCCeEEEecC---chh-------hhHHHhccCccCc
Confidence 3444555666666555443 33 344444444443333 44677777332 121 234444332 344
Q ss_pred CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC-CC
Q 004923 171 SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN-KQ 249 (723)
Q Consensus 171 ~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN-~~ 249 (723)
.-|.+|. . +|+= ..+|.|+|++.|. .++++.++||=++-.-+. +|-.......|++||+-|| |.
T Consensus 414 ~v~sNRG-A------~GID-G~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGG 478 (566)
T COG1165 414 RVYSNRG-A------SGID-GTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGG 478 (566)
T ss_pred eeecCCC-c------cccc-hhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCc
Confidence 4455542 1 1221 2389999999875 466999999999864432 4555555567877666655 42
Q ss_pred -C--CcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCC
Q 004923 250 -V--SLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL 326 (723)
Q Consensus 250 -~--s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~ 326 (723)
+ -+|+... +. -.+.+..-+-.-|+..+.+.||+
T Consensus 479 gIF~~Lp~~~~------------------------------------------~~--~fe~~F~tPh~ldF~~la~~y~l 514 (566)
T COG1165 479 GIFSLLPQAQS------------------------------------------EP--VFERLFGTPHGLDFAHLAATYGL 514 (566)
T ss_pred eeeeeccCCCC------------------------------------------cc--hHHHhcCCCCCCCHHHHHHHhCc
Confidence 1 1122110 00 01111222223456777888999
Q ss_pred eEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCC
Q 004923 327 YYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 327 ~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
.|..+ ++.+++..+++.+-. ..+-++||++|.+-.+
T Consensus 515 ~y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~~~ 550 (566)
T COG1165 515 EYHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRSDG 550 (566)
T ss_pred ccccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChhHH
Confidence 98866 789999999988764 3578999999987654
No 175
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.86 E-value=0.0065 Score=66.96 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=82.4
Q ss_pred hCCC-ceeeccccHHHHHHHHHHHHhc-CCeeEEeehhHHHHHHHHHHHHH--hhcCCCCEEEEeeCCCCCC-CCCCCCC
Q 004923 438 RFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHD--VDLQKLPVRFAMDRAGLVG-ADGPTHC 512 (723)
Q Consensus 438 ~~p~-R~id~GIaE~~~v~~AaGlA~~-G~~p~~~t~s~Fl~ra~dqi~~~--~a~~~lpv~~v~~~~G~~G-~dG~tH~ 512 (723)
+.|+ |++-+ -+|..++++|+|+.++ |.+|.+.+-.+.+-.+.+.+... .-..++|+++++...|-.| .|-|.|.
T Consensus 23 ~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~ 101 (361)
T TIGR03297 23 NNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHV 101 (361)
T ss_pred cCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhh
Confidence 4433 44444 6799999999999999 99999999666666676665433 2346899999998888656 5678884
Q ss_pred --chhhHhhhhcCCCcEEE-ccCCHHHHHHHHHHHHH---hCCCCEEEEecCCCC
Q 004923 513 --GSFDVTFMACLPNMVVM-APSDEAELFHMVATAAA---IDDRPSCFRYPRGNG 561 (723)
Q Consensus 513 --~~~d~a~~~~iP~l~V~-~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~~~ 561 (723)
+.--..++..+ ++... .|.+..|....+..|++ ..++|+.+.++++..
T Consensus 102 ~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 102 KQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred HHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 33223444443 44333 34566666555555544 367899999988754
No 176
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.81 E-value=0.0045 Score=67.40 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 004923 209 KNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (723)
Q Consensus 209 ~~~vv~viGDGa-~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~ 287 (723)
+..||++-|||. ...|. .++..|...+.|+++||.||.-++ -|.-|.+++.+.|+..++
T Consensus 151 ~~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~-nTGgQ~S~tTp~Ga~t~t----------------- 210 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYS-NTGGQASKATPLGAVAKF----------------- 210 (365)
T ss_pred ccceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccc-cCCCcCCCCCCCcCcCcc-----------------
Confidence 358999999994 46564 578888888899999999998333 344445556666654211
Q ss_pred hhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecC-CCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 004923 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vD-Ghd~~~l~~al~~a~~~~~~~P~~I~v~T~ 363 (723)
..-|.... + -|...++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 211 ----sp~Gk~~~----k----------kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 211 ----AAAGKRTG----K----------KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ----CCCCCCCC----C----------cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 00111110 0 1112346678888877663 4589999999999987 589999999875
No 177
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.76 E-value=0.0046 Score=76.76 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~-G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
.-+||.+++.++|++.+.. +++||++||||.+-- |+. |+-+|.+.+.|++++|-||....+ .|.++.-
T Consensus 467 ~~~MG~~g~~~~G~a~~~~----~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAM-----TGgQp~~ 535 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFTE----TKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAM-----TGGQPVD 535 (1159)
T ss_pred eeccCccchhhceeccccC----CCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccc-----cCCCCCC
Confidence 3467778888888887732 578999999999854 543 899999999999999999985443 4555544
Q ss_pred chh
Q 004923 265 GAL 267 (723)
Q Consensus 265 g~l 267 (723)
|.+
T Consensus 536 g~i 538 (1159)
T PRK13030 536 GSI 538 (1159)
T ss_pred CCC
Confidence 433
No 178
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.56 E-value=0.008 Score=74.52 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=48.7
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCCc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSL 252 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~-G~~~EAln~A~~~~~nli~Il~dN~~~s~ 252 (723)
.-+||.+++.++|+|-.. .+++||+++|||.+-- |+ -|+.+|.+.+.|++++|-+|..+.+
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAM 541 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAM 541 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccc
Confidence 456777888888888753 3588999999999854 54 4788999999999999999985443
No 179
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.23 E-value=0.018 Score=71.45 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=51.7
Q ss_pred cccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 187 G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~-G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
-+||.+++.++|++-..+ +++||+++|||.+.- |+ -|+.+|.+.+.|++++|-+|..+.+ .|.++.-|
T Consensus 495 ~~MGgeg~~~~G~a~f~~----~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAM-----TGgQp~~G 563 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFSR----RRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAM-----TGGQPVDG 563 (1186)
T ss_pred eccCcchhhheeecccCC----CCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhc-----cCCCCCCC
Confidence 456677777888776532 578999999999854 54 4788999999999999999985443 35555444
Q ss_pred hh
Q 004923 266 AL 267 (723)
Q Consensus 266 ~l 267 (723)
.+
T Consensus 564 ~~ 565 (1186)
T PRK13029 564 VL 565 (1186)
T ss_pred cC
Confidence 33
No 180
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.22 E-value=0.053 Score=53.32 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=79.7
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCC-CCCC
Q 004923 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGP 509 (723)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G-~dG~ 509 (723)
+.+.+...-|++. .-.|++++.+|.|++..+.+|-+.+ ..+.+..+..-+. .+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~-~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLA-NAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHH-HHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHh-hcccceeeEEEEecccchhhhcccc
Confidence 3344433356666 4899999999999998865554443 5555545544443 45667999999885544322 2466
Q ss_pred CCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH----hCCCCEEEEecCC
Q 004923 510 THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (723)
Q Consensus 510 tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~----~~~~P~~ir~~r~ 559 (723)
.|+......+++.+-.+ .+.+.++.++...++.|++ ...+|++|-+|..
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 77666666777876544 5566666666666666655 3578999998874
No 181
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.51 E-value=0.19 Score=48.80 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=67.0
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhh-cCCCCEEEEeeCCCCCCCCCCCCCch--hhHhhhhcC
Q 004923 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHCGS--FDVTFMACL 523 (723)
Q Consensus 447 GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a-~~~lpv~~v~~~~G~~G~dG~tH~~~--~d~a~~~~i 523 (723)
..+|..++++|+|..+.|.+|.+.+-.+.+..+..-+. ++. ..+.||+++....|-.|.+-+.|... ..-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~-~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALA-SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHH-HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 57888999999999999988888774444445555543 445 67999999985555333332222111 111111221
Q ss_pred CCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004923 524 PNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (723)
Q Consensus 524 P~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~ 559 (723)
++......+++++ ..+..|++ ..++|++|.+++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2234555667777 76666664 2458999988764
No 182
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.82 E-value=0.084 Score=66.68 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=77.9
Q ss_pred CeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhh
Q 004923 210 NNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 288 (723)
Q Consensus 210 ~~vv~viGDGa-~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~ 288 (723)
..||++-|||. ...|. .++..+...+.|+++||.||.- ..-|.-|.+++.+.|+..++-
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~-Y~nTggQ~S~~tp~g~~t~~~----------------- 1011 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEV-YSNTGGQSSKATPTGAIAKFA----------------- 1011 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCccccC-----------------
Confidence 47999999994 46554 4788888888999999999983 333444445555666542110
Q ss_pred hhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecC-CCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 004923 289 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 289 ~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vD-Ghd~~~l~~al~~a~~~~~~~P~~I~v~T~ 363 (723)
.-|.... | -|-..++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 1012 ----~~g~~~~----k----------kd~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1012 ----AAGKRTS----K----------KDLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ----CCCCCCC----C----------cCHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 0011000 0 0112346788988887775 6789999999999987 589999999885
No 183
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=94.64 E-value=0.061 Score=50.35 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchh--hHhhhhcCCCc
Q 004923 449 AEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSF--DVTFMACLPNM 526 (723)
Q Consensus 449 aE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~--d~a~~~~iP~l 526 (723)
+|...+|+++|+.++|.+|..-+-.+.+-...+.+-..-...++|..+++.|.|..+++=+.+-+.. -..+++. -++
T Consensus 50 REEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~-~~l 128 (172)
T COG4032 50 REEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG-LEL 128 (172)
T ss_pred chhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh-cCC
Confidence 6888899999999999999988866666554443333334568999999999997666544433211 1112222 255
Q ss_pred EEEccCCHHHHHHHHHHHHH---hCCCCEEEEecC
Q 004923 527 VVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 558 (723)
Q Consensus 527 ~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r 558 (723)
-.+.|-.|+|...++..+.. ...+|+.+.++.
T Consensus 129 pt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 129 PTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 67889999997776665543 367898887754
No 184
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.47 E-value=0.4 Score=46.87 Aligned_cols=115 Identities=10% Similarity=-0.081 Sum_probs=75.5
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++ ..-.|++++.+|.|+|..-.+|-+. +..+.+..++--+ ..+...+.||+++.............+|......+
T Consensus 40 ~~v-~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFI-QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEE-EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 444 4589999999999999984444433 3667666665544 35567899999986322211111124676666677
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~ 559 (723)
++.+-.+ ...+.++.++..++..|++. ..+|++|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7776654 45666888888777777753 458999987763
No 185
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.14 E-value=0.32 Score=47.55 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=68.7
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ -.|++++.+|-|++..-.+|-+. +..+.+..+.--+ ..+...+.||+++.........+-.++|...+..+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 44444 78999999999999984454443 3777776665544 35677899999987432221212234676666667
Q ss_pred hhcCCCcEEEccCCHHH------HHHHHHHHHH----hCCCCEEEEec
Q 004923 520 MACLPNMVVMAPSDEAE------LFHMVATAAA----IDDRPSCFRYP 557 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E------~~~~l~~A~~----~~~~P~~ir~~ 557 (723)
++.+--+ .....++.+ +..++..|+. -..+|++|-+|
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 7665443 233334444 4445555544 34578888654
No 186
>PRK07586 hypothetical protein; Validated
Probab=93.98 E-value=6.7 Score=45.43 Aligned_cols=200 Identities=17% Similarity=0.079 Sum_probs=108.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|.|+|.. |.-.+| .++.+.+..++--+ ..+...+.||+++...... .+. ..+|.....
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 116 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKY--DAPLTSDIE 116 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCC--Ccccccchh
Confidence 56655 8999999999999987 543333 35778776665544 3566789999998632211 122 124444444
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCCCcc-ccCCCCCCC-CCcc-cCce------EEee
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGNGIG-VELPPGNKG-IPLE-VGKG------RILI 584 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~~~~-~~~p~~~~~-~~~~-~gk~------~vl~ 584 (723)
.+++.+--+ .....++.++..++..|+.. ..+|++|-+|...... .+.+..... .... .... ..|.
T Consensus 117 ~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~ 195 (514)
T PRK07586 117 ALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALR 195 (514)
T ss_pred hhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 566654322 45566777777777766652 4689999999853211 111100000 0000 0000 1122
Q ss_pred e-CCcEEEEEecchHHHHHHHHHHHHh-CCCceEEee-------cCccc-----cccHHHHHHHhcCCCEEEEEcC
Q 004923 585 E-GERVALLGYGTAVQSCLAASALLES-NGLRLTVAD-------ARFCK-----PLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 585 e-G~dv~Iva~Gs~v~~al~Aa~~L~~-~Gi~v~VId-------~~~ik-----P~d~~~i~~~~~~~~~vvvvEe 646 (723)
. .+-+.|++.|.....+.++..+|.+ -|+-+-.-. -+-+- |+-.....+.+++...|+++-.
T Consensus 196 ~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 196 SGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred hcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 2 3457777777665555555555544 366542101 11111 1112334456677788888764
No 187
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.96 E-value=0.65 Score=45.04 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred hhCCCceeeccccHHHHHH----HHHHHHhcCCeeEEeeh--hHHHHHHHHHHHHHhhcC-CCCEEEEe-eCCCCCCCCC
Q 004923 437 RRFPTRCFDVGIAEQHAVT----FAAGLACEGLKPFCAIY--SSFMQRAYDQVVHDVDLQ-KLPVRFAM-DRAGLVGADG 508 (723)
Q Consensus 437 ~~~p~R~id~GIaE~~~v~----~AaGlA~~G~~p~~~t~--s~Fl~ra~dqi~~~~a~~-~lpv~~v~-~~~G~~G~dG 508 (723)
...|.+|+. .+.+| .|.|++++--+|++++. ..|+.-.-+ +..+... ++|+++++ +..++ |.-+
T Consensus 32 ~~~~~~~~~-----~gsmG~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~e--l~t~~~~~~~~i~~vV~nN~~~-g~~~ 103 (157)
T cd02001 32 QDRDGHFYM-----LGSMGLAGSIGLGLALGLSRKVIVVDGDGSLLMNPGV--LLTAGEFTPLNLILVVLDNRAY-GSTG 103 (157)
T ss_pred hcCCCCEEe-----ecchhhHHHHHHHHHhcCCCcEEEEECchHHHhcccH--HHHHHHhcCCCEEEEEEeCccc-cccC
Confidence 356788876 34444 66777665347787774 445433322 2334444 58987777 44443 2111
Q ss_pred --CCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 509 --PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 509 --~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+++....|..-+..--|+..+...+++|+...++.++. .++|++|..
T Consensus 104 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred CcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22322234333333336666777899999999999986 678988754
No 188
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.63 E-value=0.47 Score=46.48 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=66.9
Q ss_pred hhhCCCceeeccc-c-HHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCC-
Q 004923 436 LRRFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADG- 508 (723)
Q Consensus 436 ~~~~p~R~id~GI-a-E~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG- 508 (723)
.-..|.+++..+. . =-..+++|.|++++. -++++++. ..|+.. ... +..++..++|+++++ ...++ +...
T Consensus 34 ~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpv~ivv~NN~~~-~~~~~ 110 (172)
T cd02004 34 RPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GME-LETAVRYNLPIVVVVGNNGGW-YQGLD 110 (172)
T ss_pred cccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHH-HHHHHHcCCCEEEEEEECccc-ccchh
Confidence 3355788887642 1 223555777777765 36666664 345432 222 346777899977776 43442 1110
Q ss_pred --------CCC----CchhhHh-hhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 509 --------PTH----CGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 509 --------~tH----~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
..+ ....|.. +.+. -|+....-.+.+|+..+++.++. .++|++|-.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 111 GQQLSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhhhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 000 0112322 2233 26677777899999999999976 578988743
No 189
>PRK07524 hypothetical protein; Provisional
Probab=93.53 E-value=2.4 Score=49.39 Aligned_cols=115 Identities=21% Similarity=0.186 Sum_probs=75.7
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCee-EE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCCCchhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKP-FC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFD 516 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p-~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~d-G~tH~~~~d 516 (723)
|++.+ -.|.+++.+|-|+|..-.+| +| .|..+.+..++.-+ ..+...+.||+++...... .+.+ +..|+....
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 55555 79999999999999874443 44 35777766665554 4567789999988632221 2322 344553444
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+-- ......++.++...+..|++. ..+|++|-+|+.
T Consensus 119 ~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 119 RAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 566775533 245667777887777777652 458999999875
No 190
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.15 E-value=1.5 Score=42.70 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=71.7
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCC----
Q 004923 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH---- 511 (723)
Q Consensus 440 p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH---- 511 (723)
++--+-..-.|++++.+|.|++..- +|-+. +..+.+..+..-+. .+...+.||+++...... .+.....|
T Consensus 34 ~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 111 (162)
T cd07038 34 PGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA-GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLG 111 (162)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH-HHHHcCCCEEEEecCCCccccccccceeeccc
Confidence 3333445589999999999999986 44443 35666666666553 557779999998632211 22212223
Q ss_pred -Cchh-hHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecC
Q 004923 512 -CGSF-DVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPR 558 (723)
Q Consensus 512 -~~~~-d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r 558 (723)
+... ...+++.+-.+ .....++.++..+++.|+.. ..+|++|-+||
T Consensus 112 ~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 112 DGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred ccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 2222 25666655444 34446777777777777653 35799997765
No 191
>PRK12474 hypothetical protein; Provisional
Probab=91.83 E-value=6.7 Score=45.57 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=75.7
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|-|+|.. |.-.+| .|+.+.+..++--+ ..+-..+.||+++...... .+.+ .||.....
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYD--APLTSDID 120 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCC--CccccCHH
Confidence 66665 7899999999999987 544443 35777776665544 3456679999988632221 1221 24544445
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
.+++.+--+ .....++.++..+++.|+.. ..+|++|.+|+..
T Consensus 121 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 121 GFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred Hhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 667755433 45678888888888888752 3479999999853
No 192
>PRK05858 hypothetical protein; Provisional
Probab=91.45 E-value=4 Score=47.70 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=77.1
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhH
Q 004923 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDV 517 (723)
Q Consensus 440 p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~ 517 (723)
.=|++.+ ..|++++.+|-|+|....+|-++ ++.+.+..++.-+ ..+...+.||+++.........+...+|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3466665 89999999999999985454433 4666666665544 456778999998863322211112335665555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+ .....++.++...+..|++. ..+|++|.+|+.
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 667765543 45556788887777777753 357999999875
No 193
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.29 E-value=4.6 Score=47.72 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=74.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 466666 8999999999999987 5333433 4777776666554 4567789999998733222 2322 3555544
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....++.++..++..|++. ..+|++|-+|..
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 4566665443 34455666666666666542 358999999885
No 194
>PRK07064 hypothetical protein; Provisional
Probab=91.13 E-value=4.6 Score=47.15 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=75.1
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCCCchhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFD 516 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~d-G~tH~~~~d 516 (723)
|++.+ ..|++++.+|.|+|.. |...+| .|+.+.+..++.-+ ..+-..+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 55544 8899999999999987 533343 34777766666554 3566789999988632111 2322 234554455
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|..
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 6677766544 34456677777777766653 468999999874
No 195
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.96 E-value=3.2 Score=48.83 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=76.7
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p-~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|-|+|..-.+| +|. |+.+.+..++.-+ ..+-..+.||+++...... .+. ..+|....
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 118 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCC--Ccccccch
Confidence 355554 89999999999999874443 333 4777776666554 4567789999998633222 222 23666555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....++.++..++..|+.. ..+|+++.+|..
T Consensus 119 ~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 119 VGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5677766554 45556777777777777653 358999999885
No 196
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=90.95 E-value=4.5 Score=47.40 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=75.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ -.|++++.+|.|+|.. |.-.++ .|+.+.+..++.-+ ..+-..+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 56655 8999999999999986 533333 34777776666554 35667899999986322211111123565555567
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
++.+--+ .....++.++..++..|+.. ..+|++|.+|..
T Consensus 119 ~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 119 TMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 7765444 33446788888888888763 358999999875
No 197
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.91 E-value=3.3 Score=48.66 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=76.1
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeE-Ee-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPF-CA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~-~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++. ...|++++.+|.|+|..-.+|- |. |+.+.+..++.-+ ..+...+.||+++...... .+. ..+|....
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 127 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGT--DAFQEVDT 127 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccC--CCccccch
Confidence 46676 5899999999999999854553 33 4777776666654 3567789999998633222 232 23555544
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+. ..-.++.++..++..|++. ..+|++|-+|..
T Consensus 128 ~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 128 YGISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 45666654443 3345788888888777763 358999999874
No 198
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=90.84 E-value=2 Score=42.61 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred hhCCCceeeccc-c-HHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC------
Q 004923 437 RRFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV------ 504 (723)
Q Consensus 437 ~~~p~R~id~GI-a-E~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~------ 504 (723)
-..|.+|+..+- . =-..++.|.|++++. -++++.+. ..|+...-+ +..+...++|+++++ ...++.
T Consensus 37 ~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e--L~ta~~~~lpi~ivV~nN~~~~~~~~~~ 114 (186)
T cd02015 37 FKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQYNLPVKIVILNNGSLGMVRQWQ 114 (186)
T ss_pred cCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH--HHHHHHhCCCeEEEEEECCccHHHHHHH
Confidence 345778886532 1 112556777777763 35566653 456544333 345677899988776 434321
Q ss_pred ----CC-CCCCC-CchhhHh-hhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 505 ----GA-DGPTH-CGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 505 ----G~-dG~tH-~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+. ...++ ....|.. +.+.+ |+..+.-.++.|+..+++.|++ .++|++|-.
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 115 ELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00111 1122333 33333 6667777889999999999976 688988754
No 199
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.77 E-value=1.6 Score=51.30 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=76.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|.....
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGYD--AFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCCC--CCceecHH
Confidence 55554 7899999999999986 6555554 4777776665544 3556679999998733222 2322 35555555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
.+++.+-.+ .....+++++..++..|+.. ..+|++|.+|...
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 666665443 34556888888888888763 4589999998753
No 200
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=90.66 E-value=4.2 Score=47.83 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=76.6
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|.|+|.. |...+|. |+.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 124 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI-ADAMSDSVPLLVFTGQVARAGIGKD--AFQEADI 124 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecccccccCCCC--CccccCh
Confidence 366666 8999999999999987 6444433 4777776666554 3556779999999743222 2332 3555555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
..+++.+-.+. ....++.++..++..|+.. ..+|++|.+|...
T Consensus 125 ~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 125 VGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred hchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 55666654443 3455777777777777764 3589999998753
No 201
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.64 E-value=6.4 Score=40.87 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=52.7
Q ss_pred CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCC-----------------------chhhHh-
Q 004923 465 LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----------------------GSFDVT- 518 (723)
Q Consensus 465 ~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~-----------------------~~~d~a- 518 (723)
-+|++++. +.|++-.+..+. .+...++|+++++-.-+..|.-|..++ ...|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57888874 344445555554 567889998888743332221111111 111222
Q ss_pred hhhcC--CCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 519 FMACL--PNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 519 ~~~~i--P~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+.+.+ +++..+...++.|+..+++.+++ .++|++|-.
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22222 22334578999999999999987 678988743
No 202
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.57 E-value=4.1 Score=47.93 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcCCee-EEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCch
Q 004923 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS 514 (723)
Q Consensus 439 ~p~R~id~GIaE~~~v~~AaGlA~~G~~p-~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~ 514 (723)
.+-+++.+ ..|++++.+|.|+|....+| +|. |+.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|..
T Consensus 52 ~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~ 127 (571)
T PRK07710 52 CGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEA 127 (571)
T ss_pred cCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Ccccc
Confidence 35678866 99999999999999874443 333 4777765565544 3556779999988632221 2322 24445
Q ss_pred hhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 515 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 515 ~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
....+++.+--+ .+...++.++..++..|+.. ..+|++|-+|..
T Consensus 128 d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 555667765444 34556677777777777663 358999999874
No 203
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=90.37 E-value=5.4 Score=39.30 Aligned_cols=119 Identities=18% Similarity=0.079 Sum_probs=69.3
Q ss_pred hhhhhCCCceeeccc-cHHH-HHHHHHHHHhcC-CeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCC--
Q 004923 434 LFLRRFPTRCFDVGI-AEQH-AVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVG-- 505 (723)
Q Consensus 434 ~f~~~~p~R~id~GI-aE~~-~v~~AaGlA~~G-~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G-- 505 (723)
.+.-+.|.+++..+. .=.+ +++.|.|++++. -++++++ -..|+.-..+ +..+...++|+++++ ...++ |
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e--l~t~~~~~lp~~~iv~NN~~~-~~~ 111 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD--LITAVKYNLPVIVVVFNNSDL-GFI 111 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH--HHHHHHhCCCcEEEEEECCch-hHH
Confidence 344455777776543 2211 445666766654 3566665 3556654433 345677899987777 33332 1
Q ss_pred -------CCCCCC--CchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 506 -------ADGPTH--CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 506 -------~dG~tH--~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
.+.... ....|+.-+..--|+..+...++.|+...++.+++ .++|++|-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 112 KWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011111 11224332333237888888999999999999976 578988754
No 204
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.36 E-value=4.8 Score=42.96 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeehhH--HHH
Q 004923 401 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSS--FMQ 477 (723)
Q Consensus 401 ~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~s~--Fl~ 477 (723)
...++.++|.++..+.++.++ ..|.|.+..+..+. .-..+++.. ..++++|.|+.++. -++++++..+ ++.
T Consensus 18 il~al~~al~~l~~~~~~~iv-vsdiGc~~~~~~~~---~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ 91 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVV-VSGIGCSSNLPEFL---NTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYG 91 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EECCchhhhhhhhc---cCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHH
Confidence 345566666555333345444 35666444322221 111222222 44667888887763 4566666433 334
Q ss_pred HHHHHHHHHhhcCCCCEEEEe-eCCC--CCC-CCCCCC--------C---------chhhHhhhhcCCCcEEEccCCHHH
Q 004923 478 RAYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH--------C---------GSFDVTFMACLPNMVVMAPSDEAE 536 (723)
Q Consensus 478 ra~dqi~~~~a~~~lpv~~v~-~~~G--~~G-~dG~tH--------~---------~~~d~a~~~~iP~l~V~~Psd~~E 536 (723)
-.+..+. .++..++|+++++ +... .+| ..-++- . ....++.....+.+....+.++.|
T Consensus 92 ig~~eL~-tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 92 IGLGHLP-HAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred ccHHHHH-HHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 4455554 4677899988877 3332 222 111110 0 111222222233444566799999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004923 537 LFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~ 556 (723)
+..+++.|++ .++|++|-.
T Consensus 171 l~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 171 LKEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 688988754
No 205
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=90.12 E-value=5.8 Score=39.18 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=68.0
Q ss_pred hhCCCceeeccc--cHHHHHHHHHHHHhc-CCeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC---
Q 004923 437 RRFPTRCFDVGI--AEQHAVTFAAGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG--- 505 (723)
Q Consensus 437 ~~~p~R~id~GI--aE~~~v~~AaGlA~~-G~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G--- 505 (723)
-..|.|++..+- +=-..++.|.|++++ .-++++++. ..|+...-+ +..+...++|+++++ ...|+ ..
T Consensus 35 ~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e--L~ta~~~~l~vi~vV~NN~~~g~~~~~~ 112 (177)
T cd02010 35 TYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAVRLKIPLVVLIWNDNGYGLIKWKQ 112 (177)
T ss_pred cCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH--HHHHHHHCCCeEEEEEECCcchHHHHHH
Confidence 345788886532 112244467777765 346777764 445544322 334667799988886 44443 10
Q ss_pred --CCCC-CCC--chhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 506 --ADGP-THC--GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 506 --~dG~-tH~--~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
..+. .+. ...|..-+..--|..-+...+++|+...+++|++ .++|.+|-..
T Consensus 113 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 0010 111 1123332222236777788999999999999986 6789887543
No 206
>PRK06163 hypothetical protein; Provisional
Probab=90.11 E-value=11 Score=38.10 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=62.3
Q ss_pred hCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhh-cCCCCEEEEe-eCCCC--CCCCCCC
Q 004923 438 RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVD-LQKLPVRFAM-DRAGL--VGADGPT 510 (723)
Q Consensus 438 ~~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a-~~~lpv~~v~-~~~G~--~G~dG~t 510 (723)
..|.+++..| +=-..+.+|.|++++. -++++++. ..|+.-.-| + ..++ +.++|+++++ ...++ .+.....
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L-~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~ 124 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-L-GTIAALAPKNLTIIVMDNGVYQITGGQPTL 124 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-H-HHHHHhcCCCeEEEEEcCCchhhcCCccCC
Confidence 3566776432 1112233667776653 45666664 445544333 2 2333 4467877776 44443 1211011
Q ss_pred CCchhhHhhhhcCCCcE-EEccCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 511 HCGSFDVTFMACLPNMV-VMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 511 H~~~~d~a~~~~iP~l~-V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
+....|..-+..--|+. .+...+.+|+..+++.+++ .++|++|-..
T Consensus 125 ~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 11123433333223665 4667899999999999986 5889887553
No 207
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.11 E-value=1.8 Score=51.15 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=76.1
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+. ..+|...+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~ 120 (588)
T PRK07525 45 RFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQ--GGFQEAEQM 120 (588)
T ss_pred CEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCC--CCCcccchh
Confidence 55554 7999999999999987 5444443 4777766665544 3556779999999733221 222 246766666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~~ 560 (723)
.+++.+-.+ .+...+++++...+..|++ ...+|++|-+|+..
T Consensus 121 ~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 121 PMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 677765443 4566777777777777665 24689999998753
No 208
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=90.07 E-value=5.7 Score=46.56 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=75.6
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ ..|++++.+|.|+|..-.+|-+. |+.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRERE--AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCC--cccccCH
Confidence 355554 78999999999999985444333 4777776666554 3566789999988632221 2322 3565555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....++.++..++..|++. ..+|++|.+|..
T Consensus 123 ~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 123 RRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 6677765444 33446788877777777753 357999999864
No 209
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=90.01 E-value=3.6 Score=40.46 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=65.0
Q ss_pred hCCCcee-eccccH-HHHHHHHHHHHhcCCeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCC--CCC
Q 004923 438 RFPTRCF-DVGIAE-QHAVTFAAGLACEGLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGAD--GPT 510 (723)
Q Consensus 438 ~~p~R~i-d~GIaE-~~~v~~AaGlA~~G~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~d--G~t 510 (723)
..|.+++ +.|..- -..++.+.|++++--+|++++. ..|+.-.-+ +..+...++|+++++ ...++ |.- ...
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e--L~ta~~~~l~v~ivVlNN~~~-g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG--LLLGKQEPLNLTIVVINNNGG-GIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH--HHhccccCCCeEEEEEECCCC-chheeccC
Confidence 4567777 444332 1245677777766456777764 445543322 334566789987776 44432 110 000
Q ss_pred ---------CC---chhhH-hhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEE
Q 004923 511 ---------HC---GSFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (723)
Q Consensus 511 ---------H~---~~~d~-a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 555 (723)
.. ...|. .+.+.+ |+..+...+++|+...++.+++ .++|.+|-
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIe 171 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIE 171 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 00 01122 223332 5667778899999999999986 67898874
No 210
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=89.84 E-value=5.4 Score=42.73 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccH---HHHHHHHHHHHhcC-CeeEEeeh--hHHH
Q 004923 403 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAE---QHAVTFAAGLACEG-LKPFCAIY--SSFM 476 (723)
Q Consensus 403 ~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE---~~~v~~AaGlA~~G-~~p~~~t~--s~Fl 476 (723)
.++.++|.++....++.+++ .|+|.+. +.| +++++.--- -.++.+|.|+.++. -++++++. ++|+
T Consensus 14 ~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~ 84 (287)
T TIGR02177 14 SALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLY 84 (287)
T ss_pred HHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHH
Confidence 45666676664333354444 4776443 123 455433211 23566888887774 46666664 4444
Q ss_pred HHHHHHHHHHhhcCCCCEEEEe-eCCC--CCC-CCCCCC--------------CchhhHh---hhhcCCCcEE-EccCCH
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH--------------CGSFDVT---FMACLPNMVV-MAPSDE 534 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~-~~~G--~~G-~dG~tH--------------~~~~d~a---~~~~iP~l~V-~~Psd~ 534 (723)
.-....+. .++..++|+++++ +..+ .++ ..-++- ....|+. +.... +... ....++
T Consensus 85 ~mg~~eL~-tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~-g~va~~~~~~~ 162 (287)
T TIGR02177 85 GIGGNHFV-AAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGY-TFVARGFSGDV 162 (287)
T ss_pred hccHHHHH-HHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCC-CeEEEEecCCH
Confidence 33333333 4677899988877 3332 222 111110 0001222 22222 2222 336899
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe
Q 004923 535 AELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 535 ~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+|+..+++.|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999987 688987754
No 211
>PRK08322 acetolactate synthase; Reviewed
Probab=89.78 E-value=5.1 Score=46.80 Aligned_cols=113 Identities=14% Similarity=0.002 Sum_probs=75.2
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEE-e-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFC-A-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~-~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|.|+|..-.+|-+ . |..+.+..++.-+ ..+-..+.||+++...... .+.+ .||.....
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~d~~ 115 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQG--SFQIVDVV 115 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCCC--ccccccHH
Confidence 55554 8999999999999998444433 3 4677766666554 4567789999988632221 2322 35555555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+ .....++.++..++..|+.. ..+|++|-+|..
T Consensus 116 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 116 AMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 667765432 45667788877777777763 357999999875
No 212
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.75 E-value=4.4 Score=43.62 Aligned_cols=103 Identities=8% Similarity=0.054 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhc------CCeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEeeC-CCC--CC---------------
Q 004923 452 HAVTFAAGLACE------GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDR-AGL--VG--------------- 505 (723)
Q Consensus 452 ~~v~~AaGlA~~------G~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~~-~G~--~G--------------- 505 (723)
+..++|.|++.+ +-..+++++ +++..-+++. ++.++..++||++++-. ... +|
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~-l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQA-LSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHH-HHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344556666655 335566554 3344555544 45778899999998732 211 21
Q ss_pred -CCCCC--CCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 506 -ADGPT--HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 506 -~dG~t--H~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
..|.. .-.+..+.....+|-+....|.++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11111 112233333344556677899999999999999987 688988754
No 213
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.59 E-value=6.5 Score=46.18 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=77.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
+++.+ -.|++++.+|.|+|.. |...+|. |+.+.+..++.-+ ..+-..+.||+++...... .+. ..+|.....
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 118 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGT--DAFQEIDAV 118 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CCCcccchh
Confidence 55554 8999999999999986 5444433 4777766666554 4566789999998633222 222 235665555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+ .....+++++..+++.|++. ..+|++|-+|..
T Consensus 119 ~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 119 GISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 667665433 45668899999999888874 337999998864
No 214
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=89.50 E-value=1.9 Score=50.22 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=77.4
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ ..|++++.+|.|+|.. |...+| .|+.+.+..++.-+ ..+...+.||+++.............||...+..+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 56666 6999999999999986 543343 45777776666554 35667899999986432221111234887777778
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
++.+--+ .....++.++...+..|++. ..+|++|.+|..
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 8876544 34456777777777766652 357999999875
No 215
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.43 E-value=2 Score=50.32 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=73.9
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++. .-.|++++.+|.|+|..-.+|-++ |..+.+..++.-+ ..+-..+.||+++...... .+. .++|....
T Consensus 40 i~~v~-~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQ-VRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGH--DYFQEVNL 115 (549)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCC--Ccccccch
Confidence 34444 489999999999999985555443 4677766665554 3566789999988632221 222 23565555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....+++++..++..|++. ..+|++|.+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 6667665443 34556667776666666552 368999999875
No 216
>PRK08611 pyruvate oxidase; Provisional
Probab=89.31 E-value=6.3 Score=46.44 Aligned_cols=114 Identities=13% Similarity=-0.003 Sum_probs=74.0
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEE-e-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFC-A-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~-~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++. ...|++++.+|.|+|..-.+|-+ . |+.+.+..++.-+ ..+...+.||+++...... .+. ..+|.+..
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~ 119 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNL 119 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccCH
Confidence 35555 58899999999999986334433 3 4777776666554 3566789999998733222 232 22555545
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....+++++..++..|+.. ..+|++|-+|..
T Consensus 120 ~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 5677765443 34556677777766666542 458999999875
No 217
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=89.23 E-value=4.7 Score=40.07 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCcChhhhh-hhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeeh--hHHHHHHH
Q 004923 404 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY--SSFMQRAY 480 (723)
Q Consensus 404 ~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~-~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~--s~Fl~ra~ 480 (723)
.+.++|.+.+. ..+++ .|.|... ...+. .+.|.+++..|--=. .++.|.|++++--+|++++. ..|+.-.
T Consensus 3 ~~~~~l~~~l~--d~iiv--~d~G~~~-~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~- 75 (181)
T TIGR03846 3 DAIRAIASYLE--DELVV--SNIGVPS-KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL- 75 (181)
T ss_pred HHHHHHHHhCC--CCEEE--ecCCHhH-HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh-
Confidence 44555655553 23333 3444222 12222 235778776432111 23477777766456677764 4455333
Q ss_pred HHHHHHhhcCC-CCEEEEe-eCCCCCCCCC--CCCC-chhhHh-hhhcCCCcEEEc-cCCHHHHHHHHHHHHHhCCCCEE
Q 004923 481 DQVVHDVDLQK-LPVRFAM-DRAGLVGADG--PTHC-GSFDVT-FMACLPNMVVMA-PSDEAELFHMVATAAAIDDRPSC 553 (723)
Q Consensus 481 dqi~~~~a~~~-lpv~~v~-~~~G~~G~dG--~tH~-~~~d~a-~~~~iP~l~V~~-Psd~~E~~~~l~~A~~~~~~P~~ 553 (723)
|-+..++..+ +|+++++ +..|+ |.-+ ++.. ...|.. +.+.+ |+.... ..+++|+..+++ +++ .++|++
T Consensus 76 -~el~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~l 150 (181)
T TIGR03846 76 -GVLPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPTF 150 (181)
T ss_pred -hHHHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCEE
Confidence 2234456667 5987777 44443 2211 1111 112332 33332 555555 788999999997 765 678988
Q ss_pred EEe
Q 004923 554 FRY 556 (723)
Q Consensus 554 ir~ 556 (723)
|-.
T Consensus 151 i~v 153 (181)
T TIGR03846 151 IHV 153 (181)
T ss_pred EEE
Confidence 754
No 218
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.03 E-value=7.7 Score=46.07 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=76.4
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=+++.+ -.|++++.+|.|+|.. |...+| .++.+.+..++.-+ ..+...+.||+++...... .+. ..+|....
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~d~ 145 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGT--DAFQEADI 145 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CcCcccch
Confidence 355655 8999999999999987 644443 34777766665544 4567789999998733222 232 23555545
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....++.++..++..|+.. ..+|++|-+|..
T Consensus 146 ~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 146 VGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 5566655433 34567888888888888763 357999999875
No 219
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.94 E-value=7.3 Score=46.13 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=76.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..++.-| ..+-..+.||+++...... .|. ..+|....
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 125 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDT 125 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccch
Confidence 466666 8999999999999976 6444444 4777776665544 3556779999988632221 232 24565544
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
..+++.+--+ .+...++.++..++..|+.. ..+|++|.+|+..
T Consensus 126 ~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 126 VGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 5566544332 34556788888888777763 3589999998753
No 220
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=88.65 E-value=15 Score=38.09 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCCceeeccccHHHHHHHHHHHHh----c-----C-CeeEEeehhH--HHHHHHHHHHHHhhcCCCCEEEEee-CCCC--
Q 004923 439 FPTRCFDVGIAEQHAVTFAAGLAC----E-----G-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMD-RAGL-- 503 (723)
Q Consensus 439 ~p~R~id~GIaE~~~v~~AaGlA~----~-----G-~~p~~~t~s~--Fl~ra~dqi~~~~a~~~lpv~~v~~-~~G~-- 503 (723)
+|.++++..+.-...+|.+..+|. + - -++++++..+ |++..+..+.+ +...++|+++++- ..++
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~t-a~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSH-SLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHH-HHHcCCCeEEEEECCccccC
Confidence 455666665544466664444443 2 1 3667777444 44333333333 3457899888873 3322
Q ss_pred CC-CCCC----------CCC----chhhHh-hhhc--CCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 504 VG-ADGP----------THC----GSFDVT-FMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 504 ~G-~dG~----------tH~----~~~d~a-~~~~--iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
++ .... +.+ ...|+. +.+. ++....+.+.++.|+..+++.|+++.++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 1100 000 011222 2233 3333334599999999999999853578988754
No 221
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.58 E-value=6.9 Score=46.27 Aligned_cols=114 Identities=9% Similarity=-0.022 Sum_probs=76.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcC-CeeEE--eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEG-LKPFC--AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSF 515 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G-~~p~~--~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~ 515 (723)
=|++.+ ..|++++.+|.|+|..- .+|-+ .|+.+.+..++.-+ ..+...+.||+++...... .+. ..+|...
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d 118 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHK--EDFQAVD 118 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CcccccC
Confidence 467776 79999999999999865 44433 35777665555543 3556779999988632221 222 2366655
Q ss_pred hHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
...+++.+--+ .....++.++..+++.|++. ..+|++|-+|..
T Consensus 119 ~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 119 IESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred hhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 55677754333 34557788888888887763 347999999875
No 222
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.21 E-value=3.4 Score=48.75 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=75.5
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ -.|++++.+|.|+|.. |.-.+| .++.+.+..++.-+ ..+...+.||+++....+........+|......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 55555 7899999999999986 544444 34777776665544 45667899999996332221111123676655667
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN 560 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~ 560 (723)
++.+--+ .....++.++...+..|++. ..+|++|-+|+..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 7765433 34556777777777666652 3489999999753
No 223
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=88.18 E-value=3.2 Score=48.30 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=73.5
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++ ..-.|++++.+|.|+|....+|-+. +..+.+..++.-+ ..+...+.||+++...... .+. ++.++....
T Consensus 49 i~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~-~~~~~~~d~ 125 (530)
T PRK07092 49 FRYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPF-EPFLAAVQA 125 (530)
T ss_pred CCEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCc-cchhcccCH
Confidence 3666 4589999999999999974455444 2455555555544 3566789999988643222 222 232332333
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+-.+.. ...++.++..++..|+.. ..+|++|-+|..
T Consensus 126 ~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 467777665533 346688877777777763 357999998864
No 224
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=88.15 E-value=3.8 Score=48.39 Aligned_cols=114 Identities=10% Similarity=-0.000 Sum_probs=75.0
Q ss_pred ceeeccccHHHHHHHHHHHHhcC-CeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEG-LKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G-~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
|++.+ -.|++++.+|-|+|... .+|-++ |+.+.+..++.-+ ..+...+.||+++...... .+. ..+|....
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~ 118 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHK--EDFQAVDI 118 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CcccccCH
Confidence 55543 67999999999999863 454443 4677666665544 3556779999998633221 222 23565555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
..+++.+--+ .....++.++..+++.|++. ..+|++|-+|+..
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 119 AAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 5667665433 34456788888888888762 4479999998853
No 225
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=88.04 E-value=2.1 Score=40.58 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEE-cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVI-GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~vi-GDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
..+|.|+|.+ +. ..++.+. |.|..+ ..+++-.|...+.|+++|..+.+
T Consensus 48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 4555565553 33 3334444 888764 67888888887899999997665
No 226
>PRK08617 acetolactate synthase; Reviewed
Probab=87.66 E-value=3 Score=48.82 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=76.5
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p-~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ ..|++++.+|.|+|....+| +|. |+.+.+..++.-+ ..+...+.||+++...... .+. ..||.+..
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 456655 89999999999999984443 333 4777766665554 3566789999998632221 232 24777766
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .+...++.++..++..|++. ..+|++|-+|..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 6777776543 44556777777777777663 357999998875
No 227
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.56 E-value=3.6 Score=48.41 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=76.7
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
-|++.+ -.|++++.+|.|+|.. |...+| .++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGKD--GFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccCC--CCcccch
Confidence 466665 7999999999999987 543443 34777776666554 3556779999988632221 2322 3555544
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
..+++.+--+ .....+++++..++..|+.. ..+|++|.+|...
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 4566665443 34557888888888888763 3589999998753
No 228
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.54 E-value=3.8 Score=48.26 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=72.8
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p-~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a 518 (723)
=|++.+ -.|.+++.+|-|+|....+| +|. ++.+.+..+..-+ ..+-..+.||+++.........+..++|.+....
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 355555 78999999999999874444 333 4777776666544 3556779999998633222222334466665556
Q ss_pred hhhcCCCcEEEccCCHHHHHHH----HHHHHHhCCCCEEEEecCCC
Q 004923 519 FMACLPNMVVMAPSDEAELFHM----VATAAAIDDRPSCFRYPRGN 560 (723)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~----l~~A~~~~~~P~~ir~~r~~ 560 (723)
+++.+--+ .....++.++..+ ++.|.. ..+|++|-+|...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcch
Confidence 66654332 2344445555444 444444 6689999999753
No 229
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=87.45 E-value=8.5 Score=45.42 Aligned_cols=114 Identities=14% Similarity=0.013 Sum_probs=73.3
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|-|+|..-.+|-+++ ..+.+..++.-+ ..+-..+.||+++...... .+. | .+|...+
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~ 117 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHP 117 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCC-C-CccccCh
Confidence 345555 689999999999999854554443 566665655544 3566789999998632221 122 2 3555555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~ 559 (723)
..+++.+--+ .+...+++++..++..|++ ...+|++|-+|..
T Consensus 118 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 118 DRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 5666654332 3566677777776666655 2468999999874
No 230
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.38 E-value=3.9 Score=48.14 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=75.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ -.|++++.+|.|+|.. |...++. |+.+.+..++.-+ ..+-..+.||+++..........-..+|......+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 56655 8999999999999987 5333333 4777766666554 35667899999886322211111123565555566
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
++.+--+ .....++.++..++..|++. ..+|++|-+|..
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 6654433 34566778877777777763 358999999875
No 231
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=87.31 E-value=3.8 Score=48.26 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=74.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a 518 (723)
=|++.+ ..|++++.+|.|+|..-.+|-+. |..+.+..++.-+ ..+...+.||+++.........+-..+|.+....
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 456665 69999999999999874444443 4666665555544 3566789999988633221111122466665566
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
+++.+--+ .....+++++...+..|++. ..+|++|-+|..
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77765543 33556667777766666652 357999998875
No 232
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=87.13 E-value=3.8 Score=47.93 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=75.7
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|.|+|.. |...+|. |+.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|.....
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~ 115 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGTD--AFQEIDVL 115 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CCcccchh
Confidence 55555 8999999999999997 5433433 4777766666554 3567789999998743322 2322 35655555
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+.. ...++.++..++..|++. ..+|++|-+|..
T Consensus 116 ~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 116 GLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 66776655433 334788888888887763 357999999874
No 233
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=86.99 E-value=11 Score=38.11 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=70.3
Q ss_pred CcEEEEEecchH-HHHHHHHHHHHhC--CCceEEeecCcc---cc-------ccHHHHHHHhcCCCEEEEEcCCCCCChH
Q 004923 587 ERVALLGYGTAV-QSCLAASALLESN--GLRLTVADARFC---KP-------LDHALIRSLAKSHEVLITVEEGSIGGFG 653 (723)
Q Consensus 587 ~dv~Iva~Gs~v-~~al~Aa~~L~~~--Gi~v~VId~~~i---kP-------~d~~~i~~~~~~~~~vvvvEe~~~gG~g 653 (723)
.||+|.+.|... .++++|+++|++. +++++||++.-| .| ++.+.+.++..+.+.||+.= -|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFaf----HGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAF----HGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEE----SSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEc----CCCH
Confidence 599999999985 6999999999988 999998877654 22 56678888887777777543 3445
Q ss_pred HHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 654 SHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 654 ~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
..|-..+-.+. ..-++..-|. .+-|..-++-++.-..++|-=+++..+.+.+.+
T Consensus 111 ~~i~~L~~~R~---n~~~~hV~GY-~EeGttTTPFDM~vlN~~dRfhLa~dai~~~~~ 164 (203)
T PF09363_consen 111 WLIHRLLFGRP---NHDRFHVHGY-REEGTTTTPFDMRVLNGMDRFHLAKDAIRRVPR 164 (203)
T ss_dssp HHHHHHTTTST---TGGGEEEEEE--S---SS-HHHHHHCTT-SHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCC---CCCCeEEEee-ccCCCcCchHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 55544433221 1123333343 223444568888888889877777776665543
No 234
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=86.96 E-value=11 Score=40.23 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhc-CCeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCC----CC-----------C--
Q 004923 452 HAVTFAAGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADG----PT-----------H-- 511 (723)
Q Consensus 452 ~~v~~AaGlA~~-G~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG----~t-----------H-- 511 (723)
.++.+|.|++++ --++++++. ++|+.-. .+-+..++..++|+++++-.-+..|.-+ ++ +
T Consensus 72 ~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~ 150 (277)
T PRK09628 72 RAVAYATGIKLANPDKHVIVVSGDGDGLAIG-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGN 150 (277)
T ss_pred cHHHHHHHHHHHCCCCeEEEEECchHHHHhh-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCC
Confidence 567788888886 235566653 4454322 2323346788999888874332222111 00 0
Q ss_pred -CchhhHhhhhcCCCcEE---EccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 512 -CGSFDVTFMACLPNMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 512 -~~~~d~a~~~~iP~l~V---~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
....|+.-++.--|..- ....++.|+..+++.|++ .++|++|-.
T Consensus 151 ~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 151 IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 01122222222124443 578999999999999987 688988854
No 235
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=86.89 E-value=4.2 Score=47.85 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=74.1
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|.|+|.. |.-.+|. |+.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 44444 7899999999999987 5443433 4777776666554 4566789999998632221 2332 24544445
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+ .+...+++++..++..|+.. ..+|++|-+|..
T Consensus 121 ~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 121 GVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 666665444 33446778877777777652 458999999864
No 236
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=86.69 E-value=4.4 Score=47.88 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=74.7
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 519 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~ 519 (723)
|++.+ ..|.+++.+|.|+|.. |.-.++. |+.+.+..++.-+ ..+-..+.||+++.............+|......+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 55655 7999999999999987 5333333 4777766666554 45677899999986322221111223565555566
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
++.+--+. ..-.+++++...+..|+.. ..+|++|.+|..
T Consensus 118 ~~~~tk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 118 FMPITKHN-FQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HhhhcceE-EecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 66654433 3445677777777777763 357999999875
No 237
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=86.65 E-value=4.6 Score=47.57 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=70.2
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|.|+|....+|-+++ ..+....+..-+ ..+...+.||+++...... .|. ..+|...+.
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~ 118 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccChh
Confidence 44443 689999999999999844554443 566655555444 4566789999988632211 232 236666666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~ 559 (723)
.+++.+--+ .....+++++...+..|+. ...+|++|-+|..
T Consensus 119 ~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 119 ELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred hhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 777755433 2335566665554544443 2458999999874
No 238
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.30 E-value=19 Score=38.82 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhc----CC-eeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CCCC-CC----------C
Q 004923 452 HAVTFAAGLACE----GL-KPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VGAD-GP----------T 510 (723)
Q Consensus 452 ~~v~~AaGlA~~----G~-~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G~d-G~----------t 510 (723)
+++++|.|++.+ +- ++++++. +.|..-++..+. .+...+.++++++ +...+ +|.. -+ +
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 466777777665 32 3455553 456666665554 4567788888876 33221 2210 01 0
Q ss_pred ------------CCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 511 ------------HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 511 ------------H~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
.-.+..++....+|-+....|.++.|+...++.|++ .++|.+|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 112233333345566777899999999999999986 689988753
No 239
>PRK08266 hypothetical protein; Provisional
Probab=86.28 E-value=4.6 Score=47.13 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=75.1
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEE--eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC-CCCCCchh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFC--AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSF 515 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~--~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~d-G~tH~~~~ 515 (723)
=|++.+ ..|++++.+|.|+|..-.+|-+ .|+.+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 456655 8999999999999987444433 34777766666554 4667789999988632221 2322 23444345
Q ss_pred hHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
...+++.+--+ .....+++++..++..|++. ..+|+++-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 55677766543 44555667777777666652 468999998874
No 240
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.23 E-value=4.9 Score=47.80 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=75.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|.|+|....+|-++ +..+.+..++.-+ .++...+.||+++...... .|. ..+|....
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d~ 136 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGT--DAFQETDI 136 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCC--CCcccccH
Confidence 467777 89999999999999874444433 3677766665544 4667789999988633222 232 23454444
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....+++++..++..|++. ..+|+++.+|..
T Consensus 137 ~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 137 FGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 4566654322 34567778888877777763 348999999874
No 241
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=86.20 E-value=9.1 Score=40.52 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=42.2
Q ss_pred CcccchhhHHHHHHHHHhhhc---C--CC--CeEEEEEcCCc--ccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 186 TGHSSTSISAGLGMAVGRDLK---G--RK--NNVVAVIGDGA--MTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~---g--~~--~~vv~viGDGa--~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
.+.-|+.++.|+-.|+..--. + .. .+++.++.||+ .++|..-+++.-|...+..++||+-||.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 344456677776665542110 1 11 38999999999 8889887777777777877777776664
No 242
>PLN02470 acetolactate synthase
Probab=85.93 E-value=4.6 Score=47.66 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=76.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|.|+|.. |...+| .|+.+.+..++.-| ..+-..+.||+++...... .+. -.+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 466666 8899999999999987 544443 34788776666554 3566779999998632221 122 22555555
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+-.+ .....+++++..++..|+.. ..+|++|-+|..
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 5566654333 23456888888888888764 358999999875
No 243
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=85.85 E-value=6.5 Score=46.15 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=73.5
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCee--EEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKP--FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p--~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|-|+|....+| ++.|+.+.+..++.-+ ..+...+.||+++...... .+. ..+|.....
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~--~~~q~~d~~ 124 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAV-IEAGLTGVPLIVLTADRPPELRDC--GANQAIDQL 124 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcC--CCCceecHh
Confidence 55544 78999999999999874443 3446888877776655 4567789999998633222 232 235666667
Q ss_pred hhhhcCCCcEEEccCCHHH-----HHHHHHH---HHHhCCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAE-----LFHMVAT---AAAIDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E-----~~~~l~~---A~~~~~~P~~ir~~r~ 559 (723)
.+++.+-...+-.|....+ +..+++. |.....+|++|-+|..
T Consensus 125 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 125 GLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 7777766455555655211 2334444 3333578999999864
No 244
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.84 E-value=9.1 Score=37.88 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcCCeeEEeehh--HHHHHHHHHHHHHhhcCC-CCEEEEe-eCCCCCCCCCCCCCc-
Q 004923 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS--SFMQRAYDQVVHDVDLQK-LPVRFAM-DRAGLVGADGPTHCG- 513 (723)
Q Consensus 439 ~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s--~Fl~ra~dqi~~~~a~~~-lpv~~v~-~~~G~~G~dG~tH~~- 513 (723)
.|.+++..|.-= ..++.|.|++++.-++++++.. .|+.-. .. +..++..+ .|+++++ ...++ +..+..+..
T Consensus 34 ~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~~-~e-l~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~ 109 (179)
T cd03372 34 RPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMNL-GA-LATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHA 109 (179)
T ss_pred cccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhCH-HH-HHHHHHcCCCCEEEEEEcCccc-cccCCCCCCC
Confidence 456666432211 2234677777664367777754 353222 22 33445555 4565554 55443 211211111
Q ss_pred --hhhHh-hhhcCCCcEEEccC-CHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 514 --SFDVT-FMACLPNMVVMAPS-DEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 514 --~~d~a-~~~~iP~l~V~~Ps-d~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
..|.. +.+.+ |+...... +++|+..++++++ ++|.+|-.
T Consensus 110 ~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~lIev 152 (179)
T cd03372 110 GKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSFIHV 152 (179)
T ss_pred CCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEEEEE
Confidence 11222 33332 55555666 9999999999996 68988754
No 245
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=85.80 E-value=2.4 Score=42.74 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=69.0
Q ss_pred hhhhCCCceeeccc-cHH-HHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEee-CCCC--CC-
Q 004923 435 FLRRFPTRCFDVGI-AEQ-HAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGL--VG- 505 (723)
Q Consensus 435 f~~~~p~R~id~GI-aE~-~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~-~~G~--~G- 505 (723)
+.-..|.++++.+- .=. ..++.|.|++++. -++++++. ..|+...-| +..+...++|+++++- ..|+ ..
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e--L~Ta~~~~lpviivV~NN~~yg~~~~ 119 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGAQHRIPYIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH--HHHHHHhCCCeEEEEEeCchHHHHHH
Confidence 34455788887642 211 1445777777663 46677764 456544433 3356778999888773 3332 10
Q ss_pred --C---CC----CCCCc---------hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 506 --A---DG----PTHCG---------SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 506 --~---dG----~tH~~---------~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
. ++ ..+.. ..|..-++.--|+.-+...++.|+..+++.|+. ..++|++|-.
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 0 00 00110 123332222236777888999999999999985 2578988754
No 246
>PLN02573 pyruvate decarboxylase
Probab=85.53 E-value=4.3 Score=47.87 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=69.1
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCch---
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 514 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~--- 514 (723)
+++. .-.|++++.+|-|+|.. | .++|. |+.+.+..+..-+ ..+-..+.||+++...... .+.++..|+..
T Consensus 56 ~~i~-~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIG-CCNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 3444 37899999999999986 7 66655 4777665555544 3455679999998633221 24444455431
Q ss_pred ---hhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004923 515 ---FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (723)
Q Consensus 515 ---~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~~ 560 (723)
.+..+++.+--+ .....+++++..++..|++ ...+|++|-+|+..
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 223455544322 2334455555544444443 24689999998853
No 247
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.45 E-value=4.4 Score=40.72 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=68.0
Q ss_pred hhhCCCceeeccc-cH-HHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC--
Q 004923 436 LRRFPTRCFDVGI-AE-QHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-- 505 (723)
Q Consensus 436 ~~~~p~R~id~GI-aE-~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G-- 505 (723)
.-..|.+++..+- .= -..+.+|.|++++. -++++++. ..|+.-.-| + ..+...++|+++++ ...|+ ..
T Consensus 39 ~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpvi~vV~NN~~yg~~~~~ 116 (196)
T cd02013 39 RFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-I-MTAVRHKLPVTAVVFRNRQWGAEKKN 116 (196)
T ss_pred CcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-H-HHHHHhCCCeEEEEEECchhHHHHHH
Confidence 3355788886421 11 22555777777653 46666663 456554333 3 34667789988877 44443 11
Q ss_pred ---CCC-----CCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH--hCCCCEEEEe
Q 004923 506 ---ADG-----PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRY 556 (723)
Q Consensus 506 ---~dG-----~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~--~~~~P~~ir~ 556 (723)
..+ ..+. ..|..-+..--|+.-+.-.++.|+..+++.|++ +.++|++|-.
T Consensus 117 q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 117 QVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 001 0111 123332222236777788899999999999976 1578988754
No 248
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.38 E-value=5.4 Score=46.96 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=75.3
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..+..-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 118 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGND--AFQECDM 118 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CCcccch
Confidence 356666 8999999999999987 6444443 4777766665544 3556779999988633222 2322 3555444
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .....+++++...+..|++. ..+|++|.+|..
T Consensus 119 ~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 119 IGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 5566654333 34555788888888877763 458999998875
No 249
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=85.32 E-value=17 Score=42.58 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=81.5
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCC
Q 004923 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (723)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG 508 (723)
+.|.+. .=|++.+ --||+++.+|.|+|.. |.-.+|. |..+.+..+..-+ .++-+.+.|++++.-.... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 344444 4567766 7899999999999997 5544544 4677665555543 4667789999988632211 233
Q ss_pred CCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 509 PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 509 ~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
-.+|......+++.+--+ .+...+++|+...++.|++. ..+|+++-+|+.-
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 246666555566544322 46778889999999988874 3479999998753
No 250
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=85.06 E-value=3.6 Score=41.66 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=65.4
Q ss_pred hhhCCCceeeccccHHHHHH----HHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--C-
Q 004923 436 LRRFPTRCFDVGIAEQHAVT----FAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--V- 504 (723)
Q Consensus 436 ~~~~p~R~id~GIaE~~~v~----~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~- 504 (723)
.-+.|.+++..+- .+.+| .|.|++++. -++++++. ..|+.-. |-+..+...++|+++++ +..|+ .
T Consensus 34 ~~~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 34 RARTPGGYHLEYG--YSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcCCCCcEEcCCC--cchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 3355788886522 34444 666666553 35666664 4565422 22334667799987766 44443 1
Q ss_pred ------CCC--CCCCC-------------chhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 505 ------GAD--GPTHC-------------GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 505 ------G~d--G~tH~-------------~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+.. +.... ...|..-+..--|+..+...+++|+..+++.|++ .++|++|-.
T Consensus 110 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 110 NLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 00000 0123332222236777777999999999999975 688988743
No 251
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=84.45 E-value=6.3 Score=46.18 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=74.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCC--CCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~--G~dG~tH~~~~d~ 517 (723)
|++.+ -.|++++.+|-|+|.. |.-.+|. |+.+.+..+..-+ ..+...+.||+++.-..... +.....+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 56655 8999999999999987 5434444 4677766665544 45667899999886322211 1111236665566
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHH----hCCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~----~~~~P~~ir~~r~ 559 (723)
.+++.+-.+ .+...++.++..++..|++ ...+|++|-+|..
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 777765443 4556677777777766665 2457899998874
No 252
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=84.30 E-value=14 Score=39.47 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeecc-c--cHHHHHHHHHHHHhcC-CeeEEeehhH--
Q 004923 401 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVG-I--AEQHAVTFAAGLACEG-LKPFCAIYSS-- 474 (723)
Q Consensus 401 ~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~G-I--aE~~~v~~AaGlA~~G-~~p~~~t~s~-- 474 (723)
...++.++|.++.....+.+++ .|+|-+..+ | ++++++ + .=..++++|.|++++. -++++++..+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4455666665554333454444 566644321 1 344332 1 1123555777777763 3556665333
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCC----------CCCch----hhH-hhhhcCCC--cEEEccCC
Q 004923 475 FMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGP----------THCGS----FDV-TFMACLPN--MVVMAPSD 533 (723)
Q Consensus 475 Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G-~dG~----------tH~~~----~d~-a~~~~iP~--l~V~~Psd 533 (723)
+++-....+. .++..++|+++++ +..++ ++ ...+ +..+. .|. ++...... +......+
T Consensus 99 ~f~mg~~eL~-tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHFI-HALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHHH-HHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 2333333343 4577899988877 33322 22 1111 00110 222 22233322 22235789
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q 004923 534 EAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 534 ~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+.|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999986 678988754
No 253
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=84.07 E-value=6.9 Score=45.95 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=73.4
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=+++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 466666 8999999999999987 5333333 4777776666554 4567789999998632221 2322 2444433
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+ .+.-.++.++..++..|++. ..+|++|.+|..
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 3455544322 23446777877777777763 358999999875
No 254
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=84.03 E-value=8 Score=40.53 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=61.8
Q ss_pred HHHHHHHHHhc------CCeeEEee-hhHHHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC--chhhHh-hh
Q 004923 453 AVTFAAGLACE------GLKPFCAI-YSSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDVT-FM 520 (723)
Q Consensus 453 ~v~~AaGlA~~------G~~p~~~t-~s~Fl~-ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~--~~~d~a-~~ 520 (723)
.+++|.|+|++ ..+.+|-+ -..|.. ..++.+ ..++..++| ++++++..++ +.+++++. ...|++ .+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 44566777665 34444444 333432 235543 467778987 6666666663 44454432 223332 34
Q ss_pred hcCCCcEEEccC--CHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 521 ACLPNMVVMAPS--DEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 521 ~~iP~l~V~~Ps--d~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
+.+ |+.++.-. |..++...++.+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 444 88887766 9999999999987644789887653
No 255
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=83.22 E-value=7.4 Score=45.77 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=76.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++.+ -.|++++.+|.|++.. |...+|. ++.+.+..+..-+ ..+...+.||+++...... .+..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 356555 7899999999999997 5444443 4677776666554 4667789999988632211 1111124666656
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+-.+ .+...++.++...+..|+.. ..+|++|-+|+.
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 6677765443 34556778887777777653 457899998875
No 256
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=83.16 E-value=7.8 Score=45.75 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=72.5
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++. ...|++++.+|.|+|.. |...+| .++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|.....
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 5566 47999999999999987 543333 34777766665544 4566789999998633221 2322 24444333
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+--+ .....+++++..++..|+.. ..+|++|.+|..
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 455543222 34556788888888877753 347999999875
No 257
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=82.70 E-value=5.3 Score=38.43 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCC------------CCCchhhH
Q 004923 453 AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP------------THCGSFDV 517 (723)
Q Consensus 453 ~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~------------tH~~~~d~ 517 (723)
.++.|.|+++.. -++++.+. ..|+. .++.+ ..+...++|+++++..-+..+..+. ...+..|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 445677777664 34455543 44544 34333 4566779998887743332111000 11112233
Q ss_pred h-hhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 518 T-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 518 a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
. +.+. -|+......++.|+..+++.+.+ .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 3333 37777777889999999999974 688988754
No 258
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=82.68 E-value=14 Score=37.15 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHHhc----C-CeeEEeehhHHH-H--HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCC
Q 004923 453 AVTFAAGLACE----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLP 524 (723)
Q Consensus 453 ~v~~AaGlA~~----G-~~p~~~t~s~Fl-~--ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP 524 (723)
.+++|+|+|++ | -++++++..+.- + ..++.+ +.++....|++++++..++ +.+++|. ...+ .++. .
T Consensus 80 gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a-~ 153 (195)
T cd02007 80 SISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE-L 153 (195)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-c
Confidence 44566666664 3 244555544431 2 334443 4566669999999987764 3445543 2222 3343 2
Q ss_pred CcEE---EccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 525 NMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 525 ~l~V---~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
|+.+ +...|..++..+++.+.+ .++|++|..
T Consensus 154 G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 154 GFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred CCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 4433 466788999999988855 678988865
No 259
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=81.54 E-value=8.2 Score=42.47 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCe--eEEeehhHHH--HHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCC-CchhhH----hhhh
Q 004923 452 HAVTFAAGLACEGLK--PFCAIYSSFM--QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH-CGSFDV----TFMA 521 (723)
Q Consensus 452 ~~v~~AaGlA~~G~~--p~~~t~s~Fl--~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH-~~~~d~----a~~~ 521 (723)
+++|+|.++-+.|-. ..+++|.+.. +-.|-.-+|.++..++||+|++-.-+. .+ =|.. |...+. +..-
T Consensus 144 ~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q~~~~~~~~ra~ay 221 (358)
T COG1071 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQTAAEIIAARAAAY 221 (358)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhcccchhHHhhhhcc
Confidence 566666666666733 3444465543 222333368899999999999965443 22 1222 333322 2233
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004923 522 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 556 (723)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~ 556 (723)
.||++.| .=.|...++..++.|+.+ .++|++|-.
T Consensus 222 gipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 222 GIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred CCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6899988 888888888888888764 557988853
No 260
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=81.40 E-value=15 Score=35.48 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHH-HhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMN-NAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln-~A~~~~~nli~Il~dN~ 248 (723)
++.|.|+|+ .| .+.+++.. ..+. ..++|.+. .++.++.|++++....+
T Consensus 52 vg~A~GlA~----~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLAL----HG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHH----CC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCc
Confidence 566667765 34 34444544 3332 46788887 77888899999998665
No 261
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=81.18 E-value=26 Score=40.99 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=69.8
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCC-CCc--h
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--S 514 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~t-H~~--~ 514 (723)
|++. .-.|++++-+|-|+|.. |...+|. |+.+....+..-+ ..+...+.||+++...... .+.+... ||. .
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 6666 58999999999999997 5444443 4777776665544 3556789999998632221 2332222 443 2
Q ss_pred h-hHhhhhcCCCcE--EEccCC-HHHHHHHHHHHHHhCCCCEEEEecCCC
Q 004923 515 F-DVTFMACLPNMV--VMAPSD-EAELFHMVATAAAIDDRPSCFRYPRGN 560 (723)
Q Consensus 515 ~-d~a~~~~iP~l~--V~~Psd-~~E~~~~l~~A~~~~~~P~~ir~~r~~ 560 (723)
. ...+++.+--+. |..|.+ +..+..+++.|+. ..+|++|-+|+..
T Consensus 118 ~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 2 235566543322 233433 3334555555554 5689999999853
No 262
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=81.14 E-value=7.5 Score=46.02 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=72.4
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=+++.+ -.|++++.+|-|+|.. |...+| .|+.+.+..++.-+ .++-..+.||+++...... .+.+ .+|....
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~ 118 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDL 118 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCH
Confidence 355555 8899999999999987 544444 34777776666554 4566789999988632221 2332 3554444
Q ss_pred HhhhhcCC-CcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCCC
Q 004923 517 VTFMACLP-NMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN 560 (723)
Q Consensus 517 ~a~~~~iP-~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~~ 560 (723)
..+++.+- -+ .....++.++...+..|++. ..+|++|.+|...
T Consensus 119 ~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 119 QSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred HHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 45666543 22 34455666666655555542 4589999998753
No 263
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=80.87 E-value=39 Score=33.69 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCC-CEEEEe-eCCCC--CCCCCCCC
Q 004923 439 FPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKL-PVRFAM-DRAGL--VGADGPTH 511 (723)
Q Consensus 439 ~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~l-pv~~v~-~~~G~--~G~dG~tH 511 (723)
.|.+|+..|--= ..++.|.|++++. -++++.+. ..|+.-. . -+..++..++ |+++++ +..++ .+.. .+.
T Consensus 40 ~~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i~GDG~f~m~~-~-eL~ta~~~~l~~i~ivV~NN~~yg~~~~~-~~~ 115 (188)
T cd03371 40 HAQDFLTVGSMG-HASQIALGIALARPDRKVVCIDGDGAALMHM-G-GLATIGGLAPANLIHIVLNNGAHDSVGGQ-PTV 115 (188)
T ss_pred ccCceeecCccc-cHHHHHHHHHHhCCCCcEEEEeCCcHHHhhc-c-HHHHHHHcCCCCcEEEEEeCchhhccCCc-CCC
Confidence 357888652211 1345677777653 45666664 4454322 2 2334555665 555544 55543 2211 111
Q ss_pred CchhhHh-hhhcCCCcEE-EccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 512 CGSFDVT-FMACLPNMVV-MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 512 ~~~~d~a-~~~~iP~l~V-~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
....|.. +.+.+ |+.- ....++.|+..+++.+++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112322 33333 5553 456799999999999976 578988754
No 264
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=80.70 E-value=11 Score=44.50 Aligned_cols=115 Identities=18% Similarity=0.097 Sum_probs=75.0
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCee-EE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCC----C--CCC
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKP-FC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD----G--PTH 511 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p-~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~d----G--~tH 511 (723)
|++.+ -.|++++.+|-|+|....+| +| .|+.+.+..++.-+ ..+...+.||+++...... .+.+ - -.+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 66666 67999999999999984443 33 34788877776654 3566789999988632221 1111 0 123
Q ss_pred Cc-hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 512 CG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 512 ~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
|. .....+++.+-.+ .....++.++...+..|+.. ..+|++|.+|..
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 3445666654332 45677788888888877763 367999998864
No 265
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=80.41 E-value=6.1 Score=44.76 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=70.5
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeE-EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
+++. ...|++++-+|-|+|.. |...+ +.|+.+....++.-+ ..+...+.||+++...... .+.+ .+|.....
T Consensus 40 ~~v~-~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~ 115 (432)
T TIGR00173 40 RVHV-HIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGCG--ANQTIDQP 115 (432)
T ss_pred EEEE-ecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCCC--CCcccchh
Confidence 4444 48999999999999998 53333 335777766665544 3566789999998632221 2322 25555566
Q ss_pred hhhhcCCCcEE--EccCC-------HHHHHHHHHHHHHhCCCCEEEEecCCC
Q 004923 518 TFMACLPNMVV--MAPSD-------EAELFHMVATAAAIDDRPSCFRYPRGN 560 (723)
Q Consensus 518 a~~~~iP~l~V--~~Psd-------~~E~~~~l~~A~~~~~~P~~ir~~r~~ 560 (723)
.+++.+--+.. -.|.+ +..+..+++.|.....+|++|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 67776554433 34443 233444555554335589999998643
No 266
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=79.51 E-value=10 Score=37.09 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=62.8
Q ss_pred hCCCceeeccccHH-HHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-----
Q 004923 438 RFPTRCFDVGIAEQ-HAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG----- 505 (723)
Q Consensus 438 ~~p~R~id~GIaE~-~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G----- 505 (723)
+.|.+++..+-.=. ..+..|.|++++- -++++++. ..|+.-. .. +..+...++|+++++ +..++ ..
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~e-l~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QA-LWTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HH-HHHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45778876533111 1344677777653 34555553 4455332 22 344566799988876 33332 10
Q ss_pred --CC--------CC-CCCchhhHh-hhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEE
Q 004923 506 --AD--------GP-THCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (723)
Q Consensus 506 --~d--------G~-tH~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir 555 (723)
.+ +. ......|+. +...+ |+..+.-.++.|+...++++++ .++|++|-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~ 175 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIE 175 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 00 00 001112332 23332 6666777889999999999976 67898874
No 267
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=78.04 E-value=13 Score=36.57 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCC-----------CCCchhhHh-
Q 004923 455 TFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGP-----------THCGSFDVT- 518 (723)
Q Consensus 455 ~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~-----------tH~~~~d~a- 518 (723)
+.|.|++++. -++++.+. ..|+.-++..+ ..+...++|+++++ +..++ |..+. +.....|+.
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHH
Confidence 3666666653 45666664 44554333333 34677899987776 44442 21111 011112222
Q ss_pred hhhc--CCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 519 FMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 519 ~~~~--iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
+.+. +....|-.|.+-+++...++.+++ .++|.+|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 223344455555555588898875 678987754
No 268
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=76.89 E-value=17 Score=34.68 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=64.2
Q ss_pred hCCCceeec--cccHHHHHHHHHHHHhcC-CeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC----
Q 004923 438 RFPTRCFDV--GIAEQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG---- 505 (723)
Q Consensus 438 ~~p~R~id~--GIaE~~~v~~AaGlA~~G-~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G---- 505 (723)
..|.+++.. .-+=..++++|.|++++. -++++.+ =..|+.-.- . +..+...++|+++++ +..++ .+
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~-e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQ-E-LATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGG-G-HHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccc-h-hHHHhhccceEEEEEEeCCcceEeccccc
Confidence 346777662 222334667778888873 4555555 355654432 2 335667789988877 44443 10
Q ss_pred CCCC-C--C-----CchhhH-hhhhcCCCcEEEc--cCCHHHHHHHHHHHHHhCCCCEEEE
Q 004923 506 ADGP-T--H-----CGSFDV-TFMACLPNMVVMA--PSDEAELFHMVATAAAIDDRPSCFR 555 (723)
Q Consensus 506 ~dG~-t--H-----~~~~d~-a~~~~iP~l~V~~--Psd~~E~~~~l~~A~~~~~~P~~ir 555 (723)
..+. + . ....|+ .+.+.+ |+..+. +.|++|+...++++++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 0 0 112233 333443 666655 4455999999999985 78898873
No 269
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=76.65 E-value=18 Score=35.57 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=24.8
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEE
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 359 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~ 359 (723)
++.+ |+.++.| -|..+....++.+.+ .++|+++.
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 4455 7887778 677777778887776 46899875
No 270
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=76.57 E-value=25 Score=35.18 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHHHHhc-CCeeEEeehh--HHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCCCCCCCCC--------------Cc--
Q 004923 454 VTFAAGLACE-GLKPFCAIYS--SFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTH--------------CG-- 513 (723)
Q Consensus 454 v~~AaGlA~~-G~~p~~~t~s--~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~G~dG~tH--------------~~-- 513 (723)
++.|.|++++ .-++++.+.. .|++-....+ ..+...++|+++++ +..++ |.-+..+ +.
T Consensus 57 lpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~~ 134 (193)
T cd03375 57 LAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGNI 134 (193)
T ss_pred HHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCCC
Confidence 3477777775 3466777643 3322222333 34567799988776 44443 2111000 00
Q ss_pred --hhhHh-hhhcCCCcEE---EccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 514 --SFDVT-FMACLPNMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 514 --~~d~a-~~~~iP~l~V---~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
..|.. +.+.+ |..- ....++.|+...+++|++ .++|++|-.
T Consensus 135 ~~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 135 EEPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22222 3322 468999999999999986 688988754
No 271
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=76.39 E-value=14 Score=39.95 Aligned_cols=102 Identities=11% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC--CCC-CCCCC----------C---
Q 004923 453 AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VGA-DGPTH----------C--- 512 (723)
Q Consensus 453 ~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G~-dG~tH----------~--- 512 (723)
++.+|.|++++. -++++++. ++|+.-....+. .++..++|+++++ +..++ ++. .-++. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~-tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFI-HAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHH-HHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 456778877763 45666664 444334444444 4678899988877 33332 221 00110 0
Q ss_pred -chhhHhhhhcCCCcEEE---ccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 513 -GSFDVTFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 513 -~~~d~a~~~~iP~l~V~---~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
...|+..++.--|...+ ...++.|+..+++.|++ .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333322355443 68999999999999986 688988753
No 272
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=75.44 E-value=9.3 Score=31.49 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
+|+|.+. +....|..|.+.|++.||..+.+|+..-.+ ..+.+.+... ..-.+|++.....||+..
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4666665 445679999999999999999999875332 2233444433 333667777666888763
No 273
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=74.97 E-value=9.9 Score=33.04 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=46.2
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc----CCCEEEEEcCCCCCChHHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~----~~~~vvvvEe~~~gG~g~~ 655 (723)
..+|+|++.|+ ....|..|.+.|++.|+..+.+|+.. |.+...++.+ .+-+.|++.....||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 45799999884 56789999999999999999999863 3332222221 2335677776557988644
No 274
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=74.24 E-value=13 Score=39.64 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeehh--HHH
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYS--SFM 476 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~s--~Fl 476 (723)
....++.+++.++.-..++.+++ .|.|.+..+..+.+ +. .+.+. =..++.+|.|+.++. -++++++.. +|+
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHh
Confidence 34456777776653333344443 45554332222211 11 11111 112566778887775 467777743 344
Q ss_pred HHHHHHHHHHhhcCCCCEEEEe-eCCCC--CC-CCCCC--------------CCchhhHhhhhcCCCcEEEc---cCCHH
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT--------------HCGSFDVTFMACLPNMVVMA---PSDEA 535 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~-~~~G~--~G-~dG~t--------------H~~~~d~a~~~~iP~l~V~~---Psd~~ 535 (723)
.-++..+. .++..++|+++++ +..++ ++ ..-++ -....|+.-+..--|...++ +.++.
T Consensus 92 ~iG~~eL~-tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~ 170 (280)
T PRK11869 92 AEGGNHLI-HAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIE 170 (280)
T ss_pred hCcHHHHH-HHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHH
Confidence 33344443 5677899988887 33322 21 11000 01112332222222444444 99999
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q 004923 536 ELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 536 E~~~~l~~A~~~~~~P~~ir~ 556 (723)
|+...++.|++ .++|++|-.
T Consensus 171 ~l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 171 ETKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 688988743
No 275
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=72.53 E-value=23 Score=42.35 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl-n~A~~~~~nli~Il~dN~~ 249 (723)
+++|.|||++ | -+++++.+. .+.. .+++.+ +.++..++|++++++.-+.
T Consensus 374 vg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 374 VTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred HHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 6678888762 2 345555544 4554 688887 5578889999999977764
No 276
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=72.30 E-value=28 Score=41.45 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl-n~A~~~~~nli~Il~dN~~ 249 (723)
.++.|.|||++ | -++++++ -+.+.. -++|-+ +.++..++|++++....+.
T Consensus 364 ~vg~AaGlA~~----G-~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 364 AVTFAAGMAIE----G-YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHHC----C-CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 36677887752 2 2444444 455654 677776 5577888999999988874
No 277
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=72.07 E-value=36 Score=45.41 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=73.8
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++ ....|++++-+|.|+|..-.+|-++ |..+.....+--+. .+...+.|++++...... .+.+ .+|.+.+.
T Consensus 341 ~~i-~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~-eA~~d~vPlLvItgd~p~~~~~~g--a~Q~iDq~ 416 (1655)
T PLN02980 341 TCI-ACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVV-EASQDFVPLLLLTADRPPELQDAG--ANQAINQV 416 (1655)
T ss_pred eEE-eccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH-HHhhcCCCEEEEeCCCCHHHhcCC--CCcccchh
Confidence 455 4589999999999999985555443 46777666665543 567789999998633221 2322 36777777
Q ss_pred hhhhcCCCcEEE--ccCCH-------HHHHHHHHHHHHhCCCCEEEEecC
Q 004923 518 TFMACLPNMVVM--APSDE-------AELFHMVATAAAIDDRPSCFRYPR 558 (723)
Q Consensus 518 a~~~~iP~l~V~--~Psd~-------~E~~~~l~~A~~~~~~P~~ir~~r 558 (723)
.+++.+--+..- .|.+. ..+..++..|..-..+||+|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 788876665443 44452 344555555544346899999884
No 278
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=71.99 E-value=14 Score=36.70 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=63.2
Q ss_pred hCCCceeeccc-c-HHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-C--C--C
Q 004923 438 RFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-V--G--A 506 (723)
Q Consensus 438 ~~p~R~id~GI-a-E~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~-~--G--~ 506 (723)
..|.+++..+- . =-..++.|.|++++- -++++.+. ..|+.-..| +. .+...++|+++++ ...|+ . . .
T Consensus 38 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l~-ta~~~~~p~~ivV~nN~~~~~~~~~~~ 115 (183)
T cd02005 38 PKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-LS-TMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-HH-HHHHhCCCCEEEEEECCCcEEEEEecc
Confidence 44667776421 1 112344666666652 35566553 456543333 33 4566678877776 33332 1 0 1
Q ss_pred CCCCCCc--hhhHh-hhhcC---CCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 507 DGPTHCG--SFDVT-FMACL---PNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 507 dG~tH~~--~~d~a-~~~~i---P~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
.+..+.. ..|.. +...+ |++..+...++.|+..+++++++..++|++|-.
T Consensus 116 ~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred CCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111111 12332 22332 236777889999999999999863578988754
No 279
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=71.42 E-value=36 Score=40.26 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=62.3
Q ss_pred eeccccHHHHHHHHHHHHhc----CC-eeEEeehhH--HHH-HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC-----
Q 004923 444 FDVGIAEQHAVTFAAGLACE----GL-KPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT----- 510 (723)
Q Consensus 444 id~GIaE~~~v~~AaGlA~~----G~-~p~~~t~s~--Fl~-ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~t----- 510 (723)
+..|+.= +.+++|.|+|++ |. ..+++++.+ +.. .++|. ++.++.+++|+++++..-+. +.++++
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EA-ln~A~~~k~~li~Ii~dN~~-si~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEG-LNNAAELKSNLIIIVNDNQM-SIAENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHH-HHHHHhhCCCEEEEEECCCC-cCCCCCchhhh
Confidence 4555533 467788888876 32 234444443 333 55665 46788889999999976654 212222
Q ss_pred CCc------hhhH-hhhhcCCCcEEE---ccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 511 HCG------SFDV-TFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 511 H~~------~~d~-a~~~~iP~l~V~---~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
|.. ..++ ..+..+ ||..+ ...|..++..+++.|- ..++|++|..
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~-~~~gP~~i~~ 240 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVK-DIDHPIVLHI 240 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHH-hCCCCEEEEE
Confidence 100 0011 234443 55544 5567777887887774 3578988754
No 280
>PRK06154 hypothetical protein; Provisional
Probab=70.96 E-value=32 Score=40.54 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=69.2
Q ss_pred hhhhCCCceeeccc--cHHHHHHHHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEeeC-CCCCCCC-
Q 004923 435 FLRRFPTRCFDVGI--AEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDR-AGLVGAD- 507 (723)
Q Consensus 435 f~~~~p~R~id~GI--aE~~~v~~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~~~-~G~~G~d- 507 (723)
+.-..|.+++..+- +=-..++.|.|++++- -++++++. ..|++-.-| +..+...++|+++++.. .++....
T Consensus 416 ~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~E--L~Ta~r~~lpi~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 416 YVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMD--FETAVRERIPILTILLNNFSMGGYDK 493 (565)
T ss_pred CCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH--HHHHHHhCCCeEEEEEECCccceeeh
Confidence 34455788887542 1112445666666653 46777664 446544433 44667789998887743 3321000
Q ss_pred -----CCCCCc---hhhHh-hhhcCCCcEEEccCCHHHHHHHHHHHHH--hCCCCEEEEe
Q 004923 508 -----GPTHCG---SFDVT-FMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRY 556 (723)
Q Consensus 508 -----G~tH~~---~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~--~~~~P~~ir~ 556 (723)
+..+.. ..|.. +...+ |..-+.-.+++|+..+++.|+. ..++|++|-.
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev 552 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLEV 552 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEE
Confidence 111110 12333 33333 6777788899999999999986 2577988754
No 281
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=69.16 E-value=17 Score=32.10 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=47.2
Q ss_pred CCcEEEEEec----chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHHHH
Q 004923 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHV 656 (723)
Q Consensus 586 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~~v 656 (723)
..+|+|++.| +....|..|.+.|++.|++...+|+..- |--.+.+.+.-. .+-+.|++.....||+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHH
Confidence 4579999888 4578899999999999999999998531 211222322221 23356778766689987543
No 282
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=69.12 E-value=27 Score=41.28 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcC------CeeEEeehhHHH-H--HHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCC-----CchhhH-
Q 004923 453 AVTFAAGLACEG------LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDV- 517 (723)
Q Consensus 453 ~v~~AaGlA~~G------~~p~~~t~s~Fl-~--ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH-----~~~~d~- 517 (723)
.+++|.|+|++- -++++++.++.- + ..++.+ +.++..+.|++++++..++ +-++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 456677777642 345666654432 2 444543 4567777999998887764 3344442 111221
Q ss_pred hhhhcCCCcEEEcc---CCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 518 TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 518 a~~~~iP~l~V~~P---sd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
..++.+ ||.++.+ .|..++..++..+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 234443 6766544 789999999988854 5789887643
No 283
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=68.67 E-value=26 Score=39.78 Aligned_cols=117 Identities=24% Similarity=0.247 Sum_probs=66.2
Q ss_pred hhhhhCCCceeeccccHHHHHHHHHHHHhc-----CCeeEEee--hhHHHHHHHHHHHHHhhcCCCCEEEEee-CCCCCC
Q 004923 434 LFLRRFPTRCFDVGIAEQHAVTFAAGLACE-----GLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVG 505 (723)
Q Consensus 434 ~f~~~~p~R~id~GIaE~~~v~~AaGlA~~-----G~~p~~~t--~s~Fl~ra~dqi~~~~a~~~lpv~~v~~-~~G~~G 505 (723)
-+..+.|-|-+|-|- .+-+|+..|+|++ =-+.++.+ -+.|-.-++| +..+...++||++++. ..|+.|
T Consensus 414 ~l~~~~Pr~rLDaGt--fgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg 489 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGT--FGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYG 489 (571)
T ss_pred hccCCCcccccCCcc--ccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccc
Confidence 456677888888775 2334444444443 23445544 3445333344 3355667999888875 667655
Q ss_pred CCCCCCCch------hhHhhhhcCC-----------CcEEEccCCHHHHHHHHHHHHHhCCCCEEE
Q 004923 506 ADGPTHCGS------FDVTFMACLP-----------NMVVMAPSDEAELFHMVATAAAIDDRPSCF 554 (723)
Q Consensus 506 ~dG~tH~~~------~d~a~~~~iP-----------~l~V~~Psd~~E~~~~l~~A~~~~~~P~~i 554 (723)
.|-.+.-++ .++.-..-.+ |.+=+.-.++.|+...++.+++..++|++|
T Consensus 490 ~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 490 LDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred cCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 432222111 1111111111 223344459999999999999877789887
No 284
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=68.48 E-value=17 Score=39.96 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcC-CeeEEeehhH--HHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCC--chhhHhhhh---cCC
Q 004923 453 AVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFMA---CLP 524 (723)
Q Consensus 453 ~v~~AaGlA~~G-~~p~~~t~s~--Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~--~~~d~a~~~---~iP 524 (723)
++|+|.|..+.+ -+++++++.+ |.+-.+-+-++.++..++||++++..-++ +...+++. ...|++-.. .+|
T Consensus 131 AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G~~ 209 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYGIP 209 (341)
T ss_pred HHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCCCC
Confidence 444444444444 4566666554 54332223356788999999999865553 21112221 122332221 244
Q ss_pred CcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 525 NMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 525 ~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
++.| .-.|..++...+..|++ ..++|++|-.
T Consensus 210 ~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 210 GVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4433 34455444444444443 2578988854
No 285
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=67.09 E-value=44 Score=31.97 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
..+|.|.+. .+.. .+++..|-|..+ ...+|-.|...+.|+++|+-+-.
T Consensus 54 ~~~A~g~~r----~~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 54 AEAAIGASA----AGAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHh----hCCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 444555544 3333 556666888876 56778888877799999996554
No 286
>PTZ00089 transketolase; Provisional
Probab=66.63 E-value=39 Score=40.68 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHH
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSAL 271 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l 271 (723)
.+++|.|||.. +.-+++++.+. .+.. -+++.+..++..++|+++|....+ ++.. .||++-
T Consensus 415 mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg-~~~g---~DG~TH--------- 474 (661)
T PTZ00089 415 MCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDS-IGLG---EDGPTH--------- 474 (661)
T ss_pred HHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCc-eecC---CCCCCc---------
Confidence 36788888872 11245555543 6655 789999999888999999997776 2321 145443
Q ss_pred hhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc-CCeEEEecCCCCHHHHHHHHHHhhhc
Q 004923 272 SRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKNT 350 (723)
Q Consensus 272 ~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~-G~~~~~~vDGhd~~~l~~al~~a~~~ 350 (723)
..+++++- ++++ |+.++.| -|..++..+++.+...
T Consensus 475 ------------------------q~iedia~-----------------lR~iPn~~V~~P---aD~~E~~~~l~~al~~ 510 (661)
T PTZ00089 475 ------------------------QPVETLAL-----------------LRATPNLLVIRP---ADGTETSGAYALALAN 510 (661)
T ss_pred ------------------------ccHHHHHH-----------------HhcCCCcEEEec---CCHHHHHHHHHHHHHc
Confidence 01233332 3333 5667778 5677888888877632
Q ss_pred CCCCcEEEEEE
Q 004923 351 KTTGPVLIHVV 361 (723)
Q Consensus 351 ~~~~P~~I~v~ 361 (723)
.++|+.|-..
T Consensus 511 -~~gP~~irl~ 520 (661)
T PTZ00089 511 -AKTPTILCLS 520 (661)
T ss_pred -CCCCEEEEec
Confidence 4689988764
No 287
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=66.10 E-value=30 Score=32.90 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEE-cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVI-GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~vi-GDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
+..+|.|.+.+. .+.-++.+. |=|.++ ..+++..|...+.|+++|.-+..
T Consensus 46 A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 46 AVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 355666666543 223344444 566554 66889999888999999996665
No 288
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=65.75 E-value=21 Score=38.20 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=49.1
Q ss_pred eeEEeehhH--HHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCC--chhhHhhhh---cCCCcEEEccCCHHHHH
Q 004923 466 KPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFMA---CLPNMVVMAPSDEAELF 538 (723)
Q Consensus 466 ~p~~~t~s~--Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~--~~~d~a~~~---~iP~l~V~~Psd~~E~~ 538 (723)
+++++++.+ |.+-.+-+-++.++..++|+++++..-++ +...++.. ...|++-.. .+|++. +.=.|+.++.
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~-Vdg~d~~~v~ 204 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIR-VDGNDVLAVY 204 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEE-ECCCCHHHHH
Confidence 455555443 54322223356788999999999865553 22222211 122332222 244432 3344788888
Q ss_pred HHHHHHHH---hCCCCEEEEe
Q 004923 539 HMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 539 ~~l~~A~~---~~~~P~~ir~ 556 (723)
..++.|++ ..++|++|-.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 88888774 2468988754
No 289
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=65.15 E-value=16 Score=39.32 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=58.8
Q ss_pred HHHHHHHHhc----CCeeEEe-ehhHHH--HHHHHHHHHHhhcCCCCEEEEeeCCC--C-C-CCCCCCCCchhhHhhhhc
Q 004923 454 VTFAAGLACE----GLKPFCA-IYSSFM--QRAYDQVVHDVDLQKLPVRFAMDRAG--L-V-GADGPTHCGSFDVTFMAC 522 (723)
Q Consensus 454 v~~AaGlA~~----G~~p~~~-t~s~Fl--~ra~dqi~~~~a~~~lpv~~v~~~~G--~-~-G~dG~tH~~~~d~a~~~~ 522 (723)
+.+|+|.|++ |.+.++. ++.+.. +-.+-.-+|.++..++||+|++..-+ + + .....+-..+.+.+-.-.
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~g 186 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYG 186 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccC
Confidence 5555666665 5444443 344432 22233336889999999999995433 3 1 111111122344444445
Q ss_pred CCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004923 523 LPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 556 (723)
Q Consensus 523 iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~ 556 (723)
+|++. +.=.|+.++...++.|++. ..+|++|-.
T Consensus 187 ip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 187 IPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 67664 4778999999999988873 467988754
No 290
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=64.08 E-value=54 Score=39.46 Aligned_cols=50 Identities=10% Similarity=0.271 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl-n~A~~~~~nli~Il~dN~~ 249 (723)
.++.|.|||+ .| -++|++++. .+.. -+++-+ +.++..++|++++++..+.
T Consensus 410 ~vg~AaGLA~----~G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 410 AVTFAAGLAC----EG-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred HHHHHHHHHH----CC-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 3667777776 33 355666544 4443 567754 6667888999999988774
No 291
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=63.81 E-value=58 Score=31.99 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=26.3
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEE
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 361 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~ 361 (723)
+..+ |+.++.| -|..++...++.+.+.+.++|++|...
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4555 7888878 677788888887765324789988654
No 292
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=63.74 E-value=49 Score=39.57 Aligned_cols=49 Identities=10% Similarity=0.261 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl-n~A~~~~~nli~Il~dN~~ 249 (723)
++.|.|||+. | -+++++++ +.+.. -+++-+ +.++..++|++++++..+.
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 6677777763 3 34455554 34433 566665 5667788999999988774
No 293
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=63.62 E-value=85 Score=36.64 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCceeeccccHHHHHH----HHHHHHhcC-CeeEEeeh--hHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCCC------C
Q 004923 440 PTRCFDVGIAEQHAVT----FAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV------G 505 (723)
Q Consensus 440 p~R~id~GIaE~~~v~----~AaGlA~~G-~~p~~~t~--s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~~------G 505 (723)
|.+++..+ -.+.+| .|.|++++. -++++++. +.|++-.-| +..+...++|+++++ ...++. +
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~E--L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~ 469 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQE--LGSMLRDKQHPIILVLNNEGYTVERAIHG 469 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHH--HHHHHHcCCCCEEEEEeCCceEEEEeecC
Confidence 45666544 345555 455555542 35666663 456544433 446678899987776 444431 1
Q ss_pred CCCCCCC--chhhHhhhhcCCCc----EEEccCCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 506 ADGPTHC--GSFDVTFMACLPNM----VVMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 506 ~dG~tH~--~~~d~a~~~~iP~l----~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
.. ..+. ...|..-+..--|. .-+.-.+..|+...++.+++ .++|++|-..
T Consensus 470 ~~-~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 525 (539)
T TIGR03393 470 AE-QRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAA-HERLSLIEVV 525 (539)
T ss_pred CC-CCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhc-cCCeEEEEEE
Confidence 11 1111 11222222221233 36777899999999999986 6789888553
No 294
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=62.62 E-value=74 Score=30.81 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhh-hcCCCEEEEEECCC
Q 004923 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNK 248 (723)
Q Consensus 190 G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~-~~~~nli~Il~dN~ 248 (723)
+.+.++|.|.+++ .++.++|..+=|- |...-++..|. ....|+++|+-.-+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3445666666633 3566788888883 34666777777 66799999995554
No 295
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=61.73 E-value=26 Score=28.64 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=41.2
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-C-CCEEEEEcCCCCCChHHH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-S-HEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~-~~~vvvvEe~~~gG~g~~ 655 (723)
|+|.+. +....|.+|.+.|++.||..+.+|+..- |--.+.+.+... . .-++|+++....||+...
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 444442 4568899999999999999999999753 111122222222 1 335677887667887643
No 296
>PLN02790 transketolase
Probab=61.67 E-value=52 Score=39.53 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEcc----CCHHHHHHHHHHHHHhCCC
Q 004923 478 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP----SDEAELFHMVATAAAIDDR 550 (723)
Q Consensus 478 ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~P----sd~~E~~~~l~~A~~~~~~ 550 (723)
.++|. ++.++.+++| ++++.+.-++ .-+|++.. ..+++ ..++.+ ||.++.+ .|..++..+++.|....++
T Consensus 153 ~~~EA-l~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEA-ASLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHH-HHHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 44554 4678889997 6767766553 33444432 23333 245665 9999988 4677888888887543578
Q ss_pred CEEEEec
Q 004923 551 PSCFRYP 557 (723)
Q Consensus 551 P~~ir~~ 557 (723)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9888653
No 297
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=60.66 E-value=43 Score=32.67 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEEC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~d 246 (723)
.-+|-|.|.+ .|+-..+++..|=|..+ ..-++..|..-+.||++|.-+
T Consensus 48 ~~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 48 AFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred HHHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 4456665543 33334444444666666 445677777778999999853
No 298
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=60.56 E-value=39 Score=38.81 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=85.6
Q ss_pred HHHHHHHHHhc-C-CCEEEEeccCCCCcChhh--hhhhCCC-ceeeccccHHHHHHHHHHHHhc-CCeeEEeehhHHHHH
Q 004923 405 FAEALIAEAEV-D-KDVVAIHAAMGGGTGLNL--FLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQR 478 (723)
Q Consensus 405 ~~~aL~~~~~~-d-~~iv~i~aD~~gs~~l~~--f~~~~p~-R~id~GIaE~~~v~~AaGlA~~-G~~p~~~t~s~Fl~r 478 (723)
+++.|.+.+.+ + ..++.+-.|. .|.- .-...|+ |++-+ -.|.++.=+|=|+|.. |.-.++.||+..-.-
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGDy----NL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELS 80 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGDY----NLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELS 80 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCcc----cHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhh
Confidence 34444444332 2 3566665553 3422 2223343 44433 4799999999999986 888888899887666
Q ss_pred HHHHHHHHhhc-CCCCEEEEeeCCCC--CCCCCCCCCchhh--Hh-hhhcCCCc----EEEccCC--HHHHHHHHHHHHH
Q 004923 479 AYDQVVHDVDL-QKLPVRFAMDRAGL--VGADGPTHCGSFD--VT-FMACLPNM----VVMAPSD--EAELFHMVATAAA 546 (723)
Q Consensus 479 a~dqi~~~~a~-~~lpv~~v~~~~G~--~G~dG~tH~~~~d--~a-~~~~iP~l----~V~~Psd--~~E~~~~l~~A~~ 546 (723)
|++-|-- ++ -++||+.++-..-- .+.+-.-||...| .. |++---.+ ..+.|.+ +.|+..++++++.
T Consensus 81 A~NGIAG--SYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~ 158 (557)
T COG3961 81 ALNGIAG--SYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK 158 (557)
T ss_pred hhcccch--hhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH
Confidence 6554421 22 47999998722111 1222334553222 11 22211121 1344554 8899999999976
Q ss_pred hCCCCEEEEecCC
Q 004923 547 IDDRPSCFRYPRG 559 (723)
Q Consensus 547 ~~~~P~~ir~~r~ 559 (723)
..+|+||.+|-.
T Consensus 159 -~~RPvYI~lP~d 170 (557)
T COG3961 159 -QRRPVYIGLPAD 170 (557)
T ss_pred -hcCCeEEEcchH
Confidence 789999998864
No 299
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=59.90 E-value=35 Score=28.60 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHH
Q 004923 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 586 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
..+|+|.+ -+....|.+|.+.|++.|+..+.+|+..- + +.+.+.+... .+=.+|+++....||+. .|..+|
T Consensus 7 ~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~-~-~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~l 78 (79)
T TIGR02190 7 PESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND-A-RGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAYL 78 (79)
T ss_pred CCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC-h-HHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHHh
Confidence 44666655 56778899999999999999999998631 1 2223333222 22355666654578874 444443
No 300
>PRK12754 transketolase; Reviewed
Probab=58.03 E-value=67 Score=38.63 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCCc-hhhHh-hhhcCCCcEEEc---cCCHHHHHHHHHHHHHhCCCCE
Q 004923 479 AYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDVT-FMACLPNMVVMA---PSDEAELFHMVATAAAIDDRPS 552 (723)
Q Consensus 479 a~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~~-~~d~a-~~~~iP~l~V~~---Psd~~E~~~~l~~A~~~~~~P~ 552 (723)
.+|. ++.++..+|| ++++.+.-++ +-+|+|... .+|+. -++.+ ||.++. =.|..++..++..|....++|+
T Consensus 163 ~~EA-~~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt 239 (663)
T PRK12754 163 SHEV-CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKPS 239 (663)
T ss_pred HHHH-HHHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCCE
Confidence 4554 4678889999 5677776663 456666532 23432 34444 787654 3356666666666644457899
Q ss_pred EEEec
Q 004923 553 CFRYP 557 (723)
Q Consensus 553 ~ir~~ 557 (723)
+|...
T Consensus 240 ~I~~~ 244 (663)
T PRK12754 240 LLMCK 244 (663)
T ss_pred EEEEE
Confidence 98764
No 301
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=57.54 E-value=54 Score=27.69 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=39.9
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
++.|++.+.. ...|++.++.|++.|+++.+ |.+. +.+....-.......+.+|++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 5677777654 56899999999999999977 4443 444444433334566788888765
No 302
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=56.20 E-value=78 Score=38.17 Aligned_cols=49 Identities=10% Similarity=0.233 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHH-hhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNN-AGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~-A~~~~~nli~Il~dN~ 248 (723)
.++.|.|||. .| -++|+++.. .+.. -+||-+.+ ++..++|+.++++.-+
T Consensus 435 aVt~AAGLA~----~G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aG 484 (701)
T PLN02225 435 AVTFSAGLSS----GG-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAG 484 (701)
T ss_pred HHHHHHHHHH----CC-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCc
Confidence 4667777775 23 366777774 5654 66776544 6778899999998765
No 303
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=55.48 E-value=44 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred cEEEEEecc---h-HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 588 RVALLGYGT---A-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 588 dv~Iva~Gs---~-v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
+|+|+..|. . ...|.+.++.|++.|+.+.+-+ . -..+....-.....+.+.++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHHHHHHhhcCCeEEEEECc
Confidence 578899998 4 4688999999999999998876 3 234444443334456677777764
No 304
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=54.45 E-value=59 Score=26.49 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQF 659 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~~v~~~ 659 (723)
+|+|.+ -+....|.+|.+.|++.|+..+.+|+..- + +.+.+.+... .+-++|+++....||+. +|.++
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~ 70 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKY 70 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHH
Confidence 355544 36677899999999999999999998632 2 2333333322 23356667765578754 44444
No 305
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=53.23 E-value=49 Score=36.38 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=47.1
Q ss_pred CeeEEeehhH--HHHH-HHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCC--chhhH---hhhhcCCCcEEEccCCHH
Q 004923 465 LKPFCAIYSS--FMQR-AYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHC--GSFDV---TFMACLPNMVVMAPSDEA 535 (723)
Q Consensus 465 ~~p~~~t~s~--Fl~r-a~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~--~~~d~---a~~~~iP~l~V~~Psd~~ 535 (723)
-+++++++.+ |.+- .++. ++.++..++|+++++..-+. .+. +++. ...|+ +-.-.+|++.| .=.|..
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~ 232 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVL 232 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEE-eCCCHH
Confidence 3566666544 3321 1222 56788899999999865552 221 2111 11232 22224666655 344666
Q ss_pred HHHHHHHHHHH---hCCCCEEEEe
Q 004923 536 ELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 536 E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
++...++.|+. ..++|++|-.
T Consensus 233 av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 233 AVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66655555544 2467988754
No 306
>PRK05899 transketolase; Reviewed
Probab=52.78 E-value=1.2e+02 Score=36.32 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred eeEEeeh--hHHHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEccC--CHHHH
Q 004923 466 KPFCAIY--SSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS--DEAEL 537 (723)
Q Consensus 466 ~p~~~t~--s~Fl~-ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~Ps--d~~E~ 537 (723)
+.++++. ..|.. ..++.+ +.++..++| ++++++..++ +.++++.. ...|+ ..++.+ |+.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 4455554 33432 224433 467788998 6666666663 33333321 12343 344554 88887766 89999
Q ss_pred HHHHHHHHHhCCCCEEEEec
Q 004923 538 FHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 538 ~~~l~~A~~~~~~P~~ir~~ 557 (723)
..++..|.. .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999865 4689887654
No 307
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=52.36 E-value=18 Score=32.95 Aligned_cols=41 Identities=34% Similarity=0.601 Sum_probs=22.6
Q ss_pred hhccCCeEEE-ecCCCCH-HHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 321 FEELGLYYIG-PVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 321 fea~G~~~~~-~vDGhd~-~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
.+++|+.|+. ||++.++ .+-+.+|.++.+. .++|+++||+|
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 6788887643 6766555 3445555555442 57899999985
No 308
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=52.04 E-value=40 Score=32.77 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=42.8
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
++|++-|..-....++++.|++.||.+=.|-+. ..|.+.+++++.+-..|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 456777766667788999999999877666654 4689999999877788888874
No 309
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=51.00 E-value=1e+02 Score=35.92 Aligned_cols=138 Identities=24% Similarity=0.278 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee--hhHHH
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFM 476 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t--~s~Fl 476 (723)
..|..+|.++|.... -+=+++++.- .|+-|.-...++++=-..+=|.|.++.-+|.|+|.+-.+|++-+ ..+-.
T Consensus 8 t~~a~v~~eeL~r~G---V~~vvicPGS-RSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ 83 (566)
T COG1165 8 TLWARVFLEELARLG---VRDVVICPGS-RSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAV 83 (566)
T ss_pred HHHHHHHHHHHHHcC---CcEEEECCCC-CCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchh
Confidence 356666666555443 3346666542 45666655667776668899999999999999999988887654 43333
Q ss_pred HHHHHHHHHHhhcCCCCEEEEe-eCCC-C--CCCCCCCCCchhhHhhhhcCCCcEE--EccCCHHHHHHHHHHHH
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAM-DRAG-L--VGADGPTHCGSFDVTFMACLPNMVV--MAPSDEAELFHMVATAA 545 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~-~~~G-~--~G~dG~tH~~~~d~a~~~~iP~l~V--~~Psd~~E~~~~l~~A~ 545 (723)
..-|..| ..+.+.+.|.++.. +|.- + .|. -|.+.+..++.+.|+..+ =.|.+..++.+.+++..
T Consensus 84 ANl~PAV-iEA~~srvpLIVLTADRP~EL~~~GA----nQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~ 153 (566)
T COG1165 84 ANLYPAV-IEANLSRVPLIVLTADRPPELRGCGA----NQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIA 153 (566)
T ss_pred hhccHHH-HhhhhcCCceEEEeCCCCHHHhcCCC----chhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHH
Confidence 3334444 36789999988776 4431 1 233 477778888898888655 37888888777666543
No 310
>PRK12753 transketolase; Reviewed
Probab=50.89 E-value=84 Score=37.86 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHH
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSAL 271 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l 271 (723)
.+++|.|||+- +.-.++++.+ ..+.. -+++++.+++..++|+++|.-..+ +++. .||++-
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg-~~~G---~DG~TH--------- 473 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDS-IGLG---EDGPTH--------- 473 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCC-cccC---CCCccc---------
Confidence 36778888861 1123344433 36655 889999999888999999988777 3331 245433
Q ss_pred hhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc-CCeEEEecCCCCHHHHHHHHHHhhhc
Q 004923 272 SRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKNT 350 (723)
Q Consensus 272 ~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~-G~~~~~~vDGhd~~~l~~al~~a~~~ 350 (723)
..+++++- ++++ |+.++.|. |..++..+++.+.+.
T Consensus 474 ------------------------q~iedla~-----------------lR~iPn~~v~~Pa---D~~E~~~~~~~al~~ 509 (663)
T PRK12753 474 ------------------------QPVEQLAS-----------------LRLTPNFSTWRPC---DQVEAAVAWKLAIER 509 (663)
T ss_pred ------------------------ccHHHHHH-----------------HhcCCCCEEEccC---CHHHHHHHHHHHHhc
Confidence 01233332 3443 66777785 556667777766642
Q ss_pred CCCCcEEEEEE
Q 004923 351 KTTGPVLIHVV 361 (723)
Q Consensus 351 ~~~~P~~I~v~ 361 (723)
.++|+.|.+.
T Consensus 510 -~~gP~~irl~ 519 (663)
T PRK12753 510 -HNGPTALILS 519 (663)
T ss_pred -CCCCEEEEec
Confidence 3689887764
No 311
>PRK10638 glutaredoxin 3; Provisional
Probab=50.10 E-value=57 Score=27.52 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
+|+|.+. +....|..|.+.|++.|+..+++|+..-.... +.+.+... .+-++|+++....||+..
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~-~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKR-EEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHH-HHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 3555543 33468999999999999999999986321111 22222222 223566666555788853
No 312
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=49.63 E-value=1.4e+02 Score=30.58 Aligned_cols=94 Identities=24% Similarity=0.343 Sum_probs=56.6
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCC---ceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHc
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGL---RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQD 663 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi---~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~ 663 (723)
.++.||--=|.++.|. .+| |+ +++++++. +-+.+.++.++.....+++.-+...+ -++|+.+|.++
T Consensus 95 ~~v~iIPgiSS~q~a~---ARl---g~~~~~~~~islH---gr~~~~l~~~~~~~~~~vil~~~~~~--P~~IA~~L~~~ 163 (210)
T COG2241 95 EEVEIIPGISSVQLAA---ARL---GWPLQDTEVISLH---GRPVELLRPLLENGRRLVILTPDDFG--PAEIAKLLTEN 163 (210)
T ss_pred cceEEecChhHHHHHH---HHh---CCChHHeEEEEec---CCCHHHHHHHHhCCceEEEeCCCCCC--HHHHHHHHHhC
Confidence 3566665334444322 222 43 35566655 66778888777666666666655422 46889999999
Q ss_pred CCCCCCcc-eEEeecCCccccCCCHHHHH
Q 004923 664 GLLDGTVK-WRPLVLPDRYIDHGSPADQL 691 (723)
Q Consensus 664 g~~~~~~~-~~~~~~~d~~~~~g~~~el~ 691 (723)
|+.+..+- ..+++.+|+-+..++.++..
T Consensus 164 G~~~~~~~VlE~L~~~~Eri~~~~~~~~~ 192 (210)
T COG2241 164 GIGDSRVTVLENLGYPDERITDGTAEDIA 192 (210)
T ss_pred CCCCceEEEEcccCCCchhhhcCchhhhc
Confidence 97533333 24777777766666655543
No 313
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=49.12 E-value=84 Score=27.82 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=45.1
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc----CCCEEEEEcCCCCCChHHH
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~----~~~~vvvvEe~~~gG~g~~ 655 (723)
.+|+|.+. +....|.+|.+.|.+.|+..+++|+-. .|--.+....+.+ .+=+.|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 45777776 667889999999999999999999873 2211222222321 3346677887668998743
No 314
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=49.01 E-value=99 Score=30.04 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 004923 194 SAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (723)
Q Consensus 194 s~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN 247 (723)
-+|.|.|.+. ++-..+++..|=|.++ ..-++..|..-+.||++|.-+.
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~ 99 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQV 99 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCC
Confidence 4555665432 3344455555777776 4456777777789999998543
No 315
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=48.91 E-value=1.3e+02 Score=33.43 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=24.8
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v 360 (723)
++.+ |+.++.| -|..++...++.+.+ .++|++|..
T Consensus 160 lr~iPnl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 160 YSSVPGLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred HhcCCCCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4444 7888888 566777777777765 468998864
No 316
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=47.88 E-value=1.2e+02 Score=31.89 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCC-CCCcc-eEEeecCCccccCCCHHHHHH
Q 004923 629 ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL-DGTVK-WRPLVLPDRYIDHGSPADQLA 692 (723)
Q Consensus 629 ~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~-~~~~~-~~~~~~~d~~~~~g~~~el~~ 692 (723)
+.+..+++....+|+++... . -..+++.|.+.|+. +.++- ..+++.+++-+..++.+++.+
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~ 217 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ--R-IHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAE 217 (257)
T ss_pred hhHHHHhcCCCeEEEECCch--h-HHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHH
Confidence 45667776666777777432 2 46677888777763 33333 468888887777676666543
No 317
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=47.85 E-value=1.2e+02 Score=36.34 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
+++|.|||+. +.-.++++.+ ..+.. .+++++.+++..++|+++|.-..+
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 5677777762 1123333322 35544 678899999888999999997665
No 318
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.69 E-value=72 Score=29.17 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=39.1
Q ss_pred cEEEEEec--ch-HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 588 RVALLGYG--TA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~G--s~-v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
++.|++.+ .. ...|++.++.|++.|+++.+ |.+ +.+....-.....+.+.++++.+.
T Consensus 28 ~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 28 KVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 68888888 54 46888889999999999987 333 444444333333456777777765
No 319
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=46.84 E-value=42 Score=30.67 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=37.0
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
++|.+. .....|.+|.+.|+++|+..+++|+.. .|++.+.+.++++..
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 444332 335678899999999999999999985 688999888877643
No 320
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=46.73 E-value=84 Score=34.91 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHhhcCCCCEEEEeeCCCCCCCCCCC--CCchhhHh-hhhcCCCcEEEccCCHHHHHHHHHHHHH--hCCCCEEEEec
Q 004923 484 VHDVDLQKLPVRFAMDRAGLVGADGPT--HCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRYP 557 (723)
Q Consensus 484 ~~~~a~~~lpv~~v~~~~G~~G~dG~t--H~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~A~~--~~~~P~~ir~~ 557 (723)
+|.++..++|+++++..-++ +..-++ ++...++. ....+|++. +.=.|..++..++..|+. +.++|++|-..
T Consensus 181 ln~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~-VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLK-VDGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred HHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEE-ECCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57889999999999976653 211121 11122221 122466654 466678888888887765 23789988653
No 321
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=45.18 E-value=54 Score=27.19 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHHHH
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHV 656 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~~v 656 (723)
+....|.+|.+.|++.|+..+.+|+..- |-..+.+.+... .+-++|+++....||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 4567899999999999999999998642 211222322222 23366778876689987543
No 322
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=44.93 E-value=2.5e+02 Score=32.14 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecc----CC--CCcChhhhhhhCCCce-eeccccHHHHHHHHHHHHhcC-C-eeEE
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAA----MG--GGTGLNLFLRRFPTRC-FDVGIAEQHAVTFAAGLACEG-L-KPFC 469 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD----~~--gs~~l~~f~~~~p~R~-id~GIaE~~~v~~AaGlA~~G-~-~p~~ 469 (723)
.+..+++.+.|...+.+..+++-+-+. .| ...|+..-.+..|++. .--|=.||+|+-.|.++|..- . |-+.
T Consensus 7 lT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A 86 (617)
T COG3962 7 LTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYA 86 (617)
T ss_pred hHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeE
Confidence 456666666666554433332111111 11 1224544444556554 456789999999999999873 3 3333
Q ss_pred ee--hhHHHHHHHHHHHHHhh---cCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEcc--------CCHH
Q 004923 470 AI--YSSFMQRAYDQVVHDVD---LQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAP--------SDEA 535 (723)
Q Consensus 470 ~t--~s~Fl~ra~dqi~~~~a---~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~P--------sd~~ 535 (723)
+| ..+....+ +..++ -.++||.++= ..-+ .-..-|.=|++||..-..---| --+.| .-|+
T Consensus 87 ~tsSiGPGA~Nm----vTaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~~it~N-DcfrPVSRYfDRItRPE 160 (617)
T COG3962 87 VTSSIGPGAANM----VTAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDGTITTN-DCFRPVSRYFDRITRPE 160 (617)
T ss_pred EecccCCcHHHH----HHHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccCceecc-cccccHHHHhhhcCCHH
Confidence 33 34443332 22333 3689999873 1111 2222366666666321110001 11333 3589
Q ss_pred HHHHHHHHHHHh-----CCCCEEEEecC
Q 004923 536 ELFHMVATAAAI-----DDRPSCFRYPR 558 (723)
Q Consensus 536 E~~~~l~~A~~~-----~~~P~~ir~~r 558 (723)
++...+..|++- +-+|+.+.++.
T Consensus 161 Ql~sal~rA~~VmTDPA~~GpvTl~l~Q 188 (617)
T COG3962 161 QLMSALPRAMRVMTDPADCGPVTLALCQ 188 (617)
T ss_pred HHHHHHHHHHHHhCChhhcCceEEEech
Confidence 999999999873 34688887765
No 323
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=44.77 E-value=53 Score=32.28 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=37.8
Q ss_pred eCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEc
Q 004923 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 645 (723)
Q Consensus 585 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvE 645 (723)
+|++++||+.|.++... +++.|.++|.++.+++-+ .+.+.+.++....||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEEcC
Confidence 46689999999886643 356677789888888844 245566777777766554
No 324
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=44.58 E-value=50 Score=31.10 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCcc-ccc-------------cHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFC-KPL-------------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~i-kP~-------------d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
....+..+++.|++.|++++++|++.. .|+ +.+.+.+.++..+.+|+.=--+.|++...+..++
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHH
Confidence 345666777788888999999999976 232 1133444455666666655445677776666555
No 325
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=42.74 E-value=55 Score=32.60 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=37.6
Q ss_pred cHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHc-CCCCCCcc-eEEeecCCccccCCCHHHH
Q 004923 627 DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQD-GLLDGTVK-WRPLVLPDRYIDHGSPADQ 690 (723)
Q Consensus 627 d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~-g~~~~~~~-~~~~~~~d~~~~~g~~~el 690 (723)
+...+.++++....+++.+... . -..+++.+.+. +..+.++- ..++|.+++.+..++.+|+
T Consensus 147 ~~~~l~~~~~~~~~~vil~~~~--~-~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~el 209 (210)
T PF00590_consen 147 REKLLENLLANGDTLVILTDPR--R-LAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEEL 209 (210)
T ss_dssp HHHHHHHHHTTTSEEEEEESGC--C-HHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHH
T ss_pred hHHHHHHHHhCCCEEEEEccCc--h-HHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHc
Confidence 3456666777778888888765 2 45666666655 11112222 3577888887777776654
No 326
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.65 E-value=1.1e+02 Score=25.30 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=35.6
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh-cCCCEEEEEcC
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEE 646 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe 646 (723)
+|.|+..+.. ...|++.+..|++.|+.+.+.... +.++ +.+.... .....++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 5778877764 468889999999999988774432 2333 3343332 33456666654
No 327
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=41.58 E-value=89 Score=35.98 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=82.4
Q ss_pred HHHHHHHHHhc-C-CCEEEEeccCCCCcChhh--hhhhCCCceeecc-ccHHHHHHHHHHHHhc-CCeeEEeehhHHHHH
Q 004923 405 FAEALIAEAEV-D-KDVVAIHAAMGGGTGLNL--FLRRFPTRCFDVG-IAEQHAVTFAAGLACE-GLKPFCAIYSSFMQR 478 (723)
Q Consensus 405 ~~~aL~~~~~~-d-~~iv~i~aD~~gs~~l~~--f~~~~p~R~id~G-IaE~~~v~~AaGlA~~-G~~p~~~t~s~Fl~r 478 (723)
+++.|.+.+.+ + ..++.+-.| +.|.. +-.+.|+ +-.+| -.|.+++=+|=|+|.. |.-.++.||+..-.-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGD----FNL~LLD~l~~~~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGD----FNLSLLDKLYAVPG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCc----ccHHHHHHhhhcCC-ceeecccchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 45555544433 2 345555444 44433 3334454 33344 4689999999999996 888888889887666
Q ss_pred HHHHHHHHhhc-CCCCEEEEeeCCCC--CCCCCCCCCchh--hHh-hhhcCCCcE--EEccCCHHHHH----HHHHHHHH
Q 004923 479 AYDQVVHDVDL-QKLPVRFAMDRAGL--VGADGPTHCGSF--DVT-FMACLPNMV--VMAPSDEAELF----HMVATAAA 546 (723)
Q Consensus 479 a~dqi~~~~a~-~~lpv~~v~~~~G~--~G~dG~tH~~~~--d~a-~~~~iP~l~--V~~Psd~~E~~----~~l~~A~~ 546 (723)
|++-|- -++ -++||+.++..... .+.+-.-||... |.. ++|..-++. +..=-|.+++. .+++.|+.
T Consensus 81 AlNGIA--GsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~ 158 (561)
T KOG1184|consen 81 ALNGIA--GAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK 158 (561)
T ss_pred hhcccc--hhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH
Confidence 765442 122 48999998732221 233334455322 222 233333321 22223444444 45555544
Q ss_pred hCCCCEEEEecCCC
Q 004923 547 IDDRPSCFRYPRGN 560 (723)
Q Consensus 547 ~~~~P~~ir~~r~~ 560 (723)
..+|+||-.|-..
T Consensus 159 -~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 159 -ESKPVYIGVPANL 171 (561)
T ss_pred -hcCCeEEEeeccc
Confidence 7899999988643
No 328
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=40.91 E-value=1.3e+02 Score=30.48 Aligned_cols=62 Identities=24% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCC-CCCcc-eEEeecCCccccCCCHHHHHH
Q 004923 628 HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL-DGTVK-WRPLVLPDRYIDHGSPADQLA 692 (723)
Q Consensus 628 ~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~-~~~~~-~~~~~~~d~~~~~g~~~el~~ 692 (723)
.+.+..+++....+++.+.. ..+ ..+++.+.+.|+. +.++- ..+++.+++-+..++.+++.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~--~~~-~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 208 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSA--HIL-DKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLAD 208 (229)
T ss_pred hHHHHHHhcCCCeEEEECcH--HHH-HHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHH
Confidence 44566677666677777754 223 5677777777653 22232 358888887777776666543
No 329
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=40.67 E-value=1.2e+02 Score=25.59 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred cEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 588 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
++.|+..+. ....|++.++.|++.|+.+.+-+ .. +.+....-.........++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 567777775 45688888999999999888744 22 444444333333445778888763
No 330
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.67 E-value=1.2e+02 Score=25.93 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=38.4
Q ss_pred cEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 588 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+....-..-..+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777665 456888889999999999977 5442 344444333334566777777654
No 331
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=40.64 E-value=1.4e+02 Score=32.86 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEcc---CCHHHHHHHHHHHHHhCCCC
Q 004923 478 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRP 551 (723)
Q Consensus 478 ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~P---sd~~E~~~~l~~A~~~~~~P 551 (723)
.++|.+ ..++..+|. ++++.|.-++ ..||+|-- ..+|+ .-++++ ||.|+.- -|.+++..++..|-...++|
T Consensus 159 ~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 159 SVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-
T ss_pred hhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCC
Confidence 345543 466777886 6666666663 45666642 22333 235554 8988776 68888888888886555899
Q ss_pred EEEEecC
Q 004923 552 SCFRYPR 558 (723)
Q Consensus 552 ~~ir~~r 558 (723)
++|....
T Consensus 236 ~~Ii~~T 242 (332)
T PF00456_consen 236 TVIIART 242 (332)
T ss_dssp EEEEEEE
T ss_pred ceeecce
Confidence 9987654
No 332
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=39.72 E-value=3.6e+02 Score=31.69 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 207 GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 207 g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
..|=.|+++-+|-+.+ -++.||+.+|...+-|+++-+|--.
T Consensus 224 vtDIvVLVVAadDGVm-pQT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVM-PQTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred cccEEEEEEEccCCcc-HhHHHHHHHHHhcCCCEEEEEeccC
Confidence 3466777777776665 3789999999998888888775443
No 333
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=39.51 E-value=2.9e+02 Score=30.96 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCC-CEEEEeeCCCCCCCCCCCCC---chhhHh-hhhcCCCcEEEcc
Q 004923 478 RAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GSFDVT-FMACLPNMVVMAP 531 (723)
Q Consensus 478 ra~dqi~~~~a~~~l-pv~~v~~~~G~~G~dG~tH~---~~~d~a-~~~~iP~l~V~~P 531 (723)
..+|.+ +.++..++ +++++++.-+. ..||+|-. ..+++. -++++ ||.|+.-
T Consensus 163 ~vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 163 ESLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 345544 45677776 67777777663 44666654 344543 45664 8888764
No 334
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=38.55 E-value=80 Score=25.79 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC-CCCChH
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFG 653 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~-~~gG~g 653 (723)
....|..|.+.|++.|+..+.+|+.. .|-..+.+.+.-...-.+|+++.. ..+|+.
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 34688999999999999999999974 222222332221123356677544 357765
No 335
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=38.50 E-value=2.3e+02 Score=31.88 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++|+|.++| +.++++...-+.++ ..+|.+..|+...+|+++++ -|+
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~-~~R 108 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVD-VNR 108 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEE-ecc
Confidence 37788888876 56688888888887 78999999999999966555 455
No 336
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.30 E-value=1.5e+02 Score=28.84 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEE--cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~vi--GDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
..+|.|.+.+. ++..+|+. |=|.++ ..-++..|...+.||++|.-+-.
T Consensus 52 ~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 52 AFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESS
T ss_pred HHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccc
Confidence 45566666543 34444444 345444 44566667667799999997665
No 337
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=37.96 E-value=2.1e+02 Score=31.08 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=74.0
Q ss_pred EEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCC-EEEEEcCC-CCCChHHHHHH
Q 004923 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE-VLITVEEG-SIGGFGSHVVQ 658 (723)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~-~vvvvEe~-~~gG~g~~v~~ 658 (723)
..+.+|..+.++.+|.--+ .|+|.++..|..|.++-..+=.-.+.|.|.+-+..++ .+|+|-.+ ++.|.-+.+.+
T Consensus 87 N~lePgd~vLv~~~G~wg~---ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQ---RAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred hhcCCCCeEEEEEechHHH---HHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 4566888899999998665 4677777889999999777667788888887664443 44444444 35666555333
Q ss_pred HHHHcC-----CCCCCcceEEeec----CCccc----cCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 659 FLAQDG-----LLDGTVKWRPLVL----PDRYI----DHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 659 ~l~~~g-----~~~~~~~~~~~~~----~d~~~----~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
...+-+ ++- ---+.++|. .|+++ -+|+++.+-.=.|+++=.-.+++++-+..
T Consensus 164 ~~g~lc~k~~~lll-VD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 164 ISGELCHKHEALLL-VDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred HHHHHhhcCCeEEE-EechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 322211 110 001223333 23333 35777666555677664444555554443
No 338
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=37.70 E-value=56 Score=29.41 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcC
Q 004923 598 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (723)
Q Consensus 598 v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~ 637 (723)
...|.+|.+.|++.||.++.+|+.. .|++.+.+.++++.
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSK 44 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHH
Confidence 4688999999999999999999974 57888888777654
No 339
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=37.03 E-value=2.3e+02 Score=30.67 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=49.6
Q ss_pred eeEEeehhH--HHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCC--C---chhhHhhhhcCCCcEEEccCCHHHHH
Q 004923 466 KPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--C---GSFDVTFMACLPNMVVMAPSDEAELF 538 (723)
Q Consensus 466 ~p~~~t~s~--Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH--~---~~~d~a~~~~iP~l~V~~Psd~~E~~ 538 (723)
+++++++.+ |.+-.+-+-++.++..++|+++++..-++ |...++. . ...+++-.-.+|++. +.=.|+.++.
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~-Vdg~d~~av~ 210 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGER-VDGMDVLAVR 210 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEE-ECCCCHHHHH
Confidence 455555544 44322222356788899999999865553 2211111 1 122222222455553 3455788888
Q ss_pred HHHHHHHH---hCCCCEEEEe
Q 004923 539 HMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 539 ~~l~~A~~---~~~~P~~ir~ 556 (723)
..++.|+. ..++|++|-.
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 87777765 3467988754
No 340
>PRK10853 putative reductase; Provisional
Probab=36.27 E-value=52 Score=30.35 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=35.8
Q ss_pred ecc-hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 594 YGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 594 ~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
||. ....|.+|.+.|++.|+.++++|... .|++.+.+.++++..
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 443 35688999999999999999999875 788999888887543
No 341
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=35.67 E-value=1.9e+02 Score=31.55 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=48.9
Q ss_pred eEEeehhHHH---HHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCC-chhhHh-hhh--cCCCcEEEccCCHHHHHH
Q 004923 467 PFCAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-GSFDVT-FMA--CLPNMVVMAPSDEAELFH 539 (723)
Q Consensus 467 p~~~t~s~Fl---~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~-~~~d~a-~~~--~iP~l~V~~Psd~~E~~~ 539 (723)
..++.|.+.. -..||. +|++++++|||+||+-.-++ |. |.+|. ..-+.. |.| .|||+.| .=.|.--+..
T Consensus 189 v~~alYGDGAaNQGQ~fEa-~NMA~LW~LP~IFvCENN~y-GM-GTs~~Rasa~teyykRG~yiPGl~V-dGmdvlaVr~ 264 (394)
T KOG0225|consen 189 VCFALYGDGAANQGQVFEA-FNMAALWKLPVIFVCENNHY-GM-GTSAERASASTEYYKRGDYIPGLKV-DGMDVLAVRE 264 (394)
T ss_pred eEEEEeccccccchhHHHH-hhHHHHhCCCEEEEEccCCC-cc-CcchhhhhcChHHHhccCCCCceEE-CCcchhhHHH
Confidence 3444587764 134554 58899999999999944332 21 22221 111111 223 4898854 3445555556
Q ss_pred HHHHHHHh---CCCCEEEEec
Q 004923 540 MVATAAAI---DDRPSCFRYP 557 (723)
Q Consensus 540 ~l~~A~~~---~~~P~~ir~~ 557 (723)
+.++|.+. .++|.++-+.
T Consensus 265 a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 265 ATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 66666542 4789887543
No 342
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.61 E-value=1.5e+02 Score=33.22 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=56.9
Q ss_pred EEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC---CEEEEEcCCCCCChH---H
Q 004923 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGSIGGFG---S 654 (723)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~---~~vvvvEe~~~gG~g---~ 654 (723)
.++.+|.+|.++..|.--+.-. +.++..|.++.+++..+=+|+|-+.|.+.+++. +.|.++..-.+.|.- .
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~---~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFA---EIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHH---HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 3556788999999998776544 445567999999999999999999999988743 333333322344443 4
Q ss_pred HHHHHHHHcCC
Q 004923 655 HVVQFLAQDGL 665 (723)
Q Consensus 655 ~v~~~l~~~g~ 665 (723)
+|+..+.+.|.
T Consensus 152 ~I~~~~k~~g~ 162 (383)
T COG0075 152 EIAKAAKEHGA 162 (383)
T ss_pred HHHHHHHHcCC
Confidence 55665555554
No 343
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=35.31 E-value=1.3e+02 Score=28.53 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=36.6
Q ss_pred EEEEEecchHH----HHHHHHHHHHhCCC--ceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 589 VALLGYGTAVQ----SCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 589 v~Iva~Gs~v~----~al~Aa~~L~~~Gi--~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
++|+++|+... .-..+++.|++... .++++|.-+.- .+.+ ..+.+.+.+|+|+..
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVM-FRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHH-HHhcCCCEEEEEEeC
Confidence 46889998762 55677888876543 48889988763 2333 233466788888874
No 344
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=34.76 E-value=74 Score=29.73 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=35.6
Q ss_pred Eecc-hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcC
Q 004923 593 GYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (723)
Q Consensus 593 a~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~ 637 (723)
=||. ....|.+|.+.|+++|+..+++|..- .|++.+.|.++++.
T Consensus 5 iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 5 FYEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 3554 35789999999999999999999875 68898888877654
No 345
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=34.67 E-value=63 Score=29.03 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCC
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~ 639 (723)
....|.+|.+.|++.|+..+++|+.. .|++.+.+.++++..+
T Consensus 8 ~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 8 NCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 45688999999999999999999875 6889999988886543
No 346
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=34.59 E-value=2.5e+02 Score=30.28 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=41.9
Q ss_pred cCCcccchh-hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhh-hcCCCEEEEEECCC
Q 004923 184 FGTGHSSTS-ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNK 248 (723)
Q Consensus 184 ~g~G~~G~~-ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~-~~~~nli~Il~dN~ 248 (723)
|..|.+=+. ++.|.|+|++-+ .-.+++=+.+..+-+||=+.+.- +.++|+-+|.-+-|
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~Gk-------~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G 111 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAGK-------KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAG 111 (312)
T ss_pred eecchHHHHHHHHHHHHHhcCC-------CceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCC
Confidence 344554443 678888887533 33455668899889999986664 66799999999888
No 347
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=33.67 E-value=1.5e+02 Score=28.16 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=36.3
Q ss_pred EEEEEecchHH----HHHHHHHHHHhC-C--CceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 589 VALLGYGTAVQ----SCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 589 v~Iva~Gs~v~----~al~Aa~~L~~~-G--i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
++|+++|+... .-..+++.|++. + -.++++|..+.- .+.+ ..+.+++.+|+|+.-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEcc
Confidence 46889998762 456777888765 3 358889887653 2333 334466788888873
No 348
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=33.60 E-value=2.4e+02 Score=31.49 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++|+|.|+| +.++++...=+.+. ..+|.+.+|+-.+.|+++++-+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~ 108 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG 108 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC
Confidence 36777787776 55678777777776 678999999988999988876654
No 349
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.02 E-value=72 Score=26.50 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecC
Q 004923 597 AVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
..+.|+.|-+.|++.|++++++-+|
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 4567888989999999999999655
No 350
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=32.50 E-value=2.5e+02 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=24.6
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v 360 (723)
++.. |+.++.| .|..++..+++.+.+ .++|++|..
T Consensus 137 ~r~iP~l~V~~P---~d~~e~~~~l~~a~~--~~~Pv~i~~ 172 (327)
T PRK09212 137 YSHIPGLKVVAP---YFAADCKGLLKTAIR--DPNPVIFLE 172 (327)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 3443 7777778 567777777877765 478998854
No 351
>PRK10329 glutaredoxin-like protein; Provisional
Probab=32.38 E-value=1.2e+02 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=38.4
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh--c-CCCEEEEEcCCCCCChHH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--K-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~--~-~~~~vvvvEe~~~gG~g~ 654 (723)
|+|.+. .....|..|.+.|++.||..+.+|+.. |.+...++. . ..=.+|++++....||..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCCH
Confidence 555543 445788899999999999999999974 233322221 1 122556666655567753
No 352
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=32.03 E-value=1e+02 Score=28.43 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=36.1
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
|+|..+-+ ...|.+|.+.|++.||..+++|... .|.+.+.+.++++..
T Consensus 3 itiy~~p~-C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~ 50 (117)
T COG1393 3 ITIYGNPN-CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKL 50 (117)
T ss_pred EEEEeCCC-ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHc
Confidence 44443333 3589999999999999999999864 577888888777654
No 353
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=31.65 E-value=1.9e+02 Score=22.42 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=37.6
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcC-CCEEEEEcCCCCCChH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-HEVLITVEEGSIGGFG 653 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~-~~~vvvvEe~~~gG~g 653 (723)
|+|.+... ...|..|...|++.++....+|+..-.. -.+.+.+.... +-.++++.....||+.
T Consensus 2 v~ly~~~~-Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~ 65 (72)
T cd02066 2 VVVFSKST-CPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYD 65 (72)
T ss_pred EEEEECCC-CHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHH
Confidence 34444333 4688899999999999999999875322 11223333222 2235666554568874
No 354
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=31.11 E-value=2.7e+02 Score=27.73 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCcEEEEEecchHHHHHHHHHHHHhCC--CceEEe-ecCccc-cccHHHHHHHhcC
Q 004923 586 GERVALLGYGTAVQSCLAASALLESNG--LRLTVA-DARFCK-PLDHALIRSLAKS 637 (723)
Q Consensus 586 G~dv~Iva~Gs~v~~al~Aa~~L~~~G--i~v~VI-d~~~ik-P~d~~~i~~~~~~ 637 (723)
...+++||.|+.+...+..++.+.+.+ -++.++ ..++-. .+-.+.+.++.++
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~ 150 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA 150 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHh
Confidence 457999999999988887777665444 355544 455432 1224555555544
No 355
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=30.87 E-value=2.3e+02 Score=32.24 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=45.6
Q ss_pred eeEEeehhHH--HHHH-HHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHh---hhhcCCCcEEEccCCHHHHH
Q 004923 466 KPFCAIYSSF--MQRA-YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVT---FMACLPNMVVMAPSDEAELF 538 (723)
Q Consensus 466 ~p~~~t~s~F--l~ra-~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a---~~~~iP~l~V~~Psd~~E~~ 538 (723)
+++++++.+. .+-. ++ -++.++..++||++++..-+. .|..-..+....|++ -.-.+|++.| .=.|..++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~E-aLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~ 301 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFE-CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVR 301 (433)
T ss_pred CEEEEEECCCccccChHHH-HHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHH
Confidence 4556665543 3221 33 257788999999999855442 121000011112222 2223555543 445666666
Q ss_pred HHHHHHHH---hCCCCEEEEe
Q 004923 539 HMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 539 ~~l~~A~~---~~~~P~~ir~ 556 (723)
..+..|++ ..++|++|-.
T Consensus 302 ~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 302 EVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 55555544 2568988754
No 356
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=30.47 E-value=69 Score=35.36 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEEC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~d 246 (723)
++++|+|.++| +.++++.+.|+.+. ..+|.+..|+-...|+++++-+
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 37788888876 56799999999998 8999999999999998887644
No 357
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=30.18 E-value=2.2e+02 Score=23.89 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=43.6
Q ss_pred EEEEEecchHHHHHHHHHHHHh-----CCCceEEeecCccccccHHHHHHHhc---CCCEEEEEcCCCCCChHHHHHHHH
Q 004923 589 VALLGYGTAVQSCLAASALLES-----NGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~-----~Gi~v~VId~~~ikP~d~~~i~~~~~---~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
|+|.+. +....|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+-+.|+++.-..||+.. +.+++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~-~~~~~ 79 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCTD-FEAYV 79 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHH-HHHHH
Confidence 444442 345678888888887 799999999874 2323444555443 233567777655788753 44444
Q ss_pred HH
Q 004923 661 AQ 662 (723)
Q Consensus 661 ~~ 662 (723)
.+
T Consensus 80 ~~ 81 (85)
T PRK11200 80 KE 81 (85)
T ss_pred HH
Confidence 43
No 358
>PRK10026 arsenate reductase; Provisional
Probab=29.66 E-value=85 Score=29.99 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
.....|.+|.+.|++.|+..+++|... .|++.+.+.++++..
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 345789999999999999999999875 788999888877653
No 359
>PRK10824 glutaredoxin-4; Provisional
Probab=29.41 E-value=1.6e+02 Score=27.04 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=44.6
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh-cCCCEEEEEcCCCCCChHHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~gG~g~~ 655 (723)
..+|+|++-|+ ....|..|.+.|.+.|++..++|+-. .|=-.+.+.+.. ..+=.-|.|..-..||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 35688888884 67789999999999999999998853 111112222221 12335566776667887643
No 360
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=29.32 E-value=1.6e+02 Score=27.55 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEee------
Q 004923 603 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLV------ 676 (723)
Q Consensus 603 ~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~------ 676 (723)
.|++.|++.||++ +-..-++++...+ +....||++++... +.+.... .....++..++
T Consensus 49 ~a~~~l~~~Gid~---s~h~s~~l~~~~~----~~aDlIi~m~~~~~--------~~~~~~~-~~~~~~v~~~~~~~~~~ 112 (141)
T cd00115 49 RAIAVLAEHGIDI---SGHRARQLTEDDF----DEFDLIITMDESNL--------AELLEPP-PGGRAKVELLGEYAGDR 112 (141)
T ss_pred HHHHHHHHcCCCc---ccCeeeeCCHHHH----HhCCEEEEECHHHH--------HHHHhcC-CCCcceEEeHhhhCcCC
Confidence 4566677788886 3345566665443 35689999987531 1121111 11223556666
Q ss_pred -cCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 677 -LPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 677 -~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
++|.|+.. .+.|.-.-+.|.+.+.+++
T Consensus 113 ~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 113 EVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 77776643 2223333455555555554
No 361
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=29.03 E-value=1.8e+02 Score=27.51 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=34.7
Q ss_pred EEEecchHH----HHHHHHHHHHhCCC--ceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 591 LLGYGTAVQ----SCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 591 Iva~Gs~v~----~al~Aa~~L~~~Gi--~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
|+++|+... ....+++.|+++.. .++++|.-+. ..+.+...++.++.+|+|+..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 677887662 55677888876643 3778887654 233333445567788888864
No 362
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=28.81 E-value=2.1e+02 Score=33.70 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++|+|.++| +.++++.+.=..+. ...|.+..|+-...|+++++-+-.
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~ 297 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG 297 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC
Confidence 36777777776 55677777777777 788999999998899777765554
No 363
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=28.38 E-value=3.5e+02 Score=30.41 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++++|.|+| +.++++...=..+. ..+|.+..|+..++|+++++ -|+
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv-~~R 109 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAI-GNR 109 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEE-CCC
Confidence 37778888876 55677777777776 78899999999999987776 554
No 364
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.16 E-value=96 Score=28.24 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
....|.+|.+.|++.|+.++.+|+.. .|+..+.+.++++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 45788999999999999999999875 788999888887654
No 365
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=27.49 E-value=2.4e+02 Score=29.36 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=48.1
Q ss_pred cCceEEee-eCCcEEEEEecchHHHHHHHHHHHHhCC--CceEEee-cCccc-cccHHHHHHHhcCCCEEEEEcCCCCC
Q 004923 577 VGKGRILI-EGERVALLGYGTAVQSCLAASALLESNG--LRLTVAD-ARFCK-PLDHALIRSLAKSHEVLITVEEGSIG 650 (723)
Q Consensus 577 ~gk~~vl~-eG~dv~Iva~Gs~v~~al~Aa~~L~~~G--i~v~VId-~~~ik-P~d~~~i~~~~~~~~~vvvvEe~~~g 650 (723)
.|++.... .++.+++|+-|+.+......++.+.+.| -++.++- .++-+ .+..+.+.+...+ ...++++++..|
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~G 174 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWKG 174 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCCc
Confidence 45544333 2445999999999999999999998878 5666554 33322 2445566666554 677888766543
No 366
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=27.39 E-value=4e+02 Score=25.66 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
+.-+|.|.+.+. +-..+++.-|=|..+ ..-++..|..-+.||++|.-+..
T Consensus 47 A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 47 AGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 345566665543 122233333666665 44577777777799999985543
No 367
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=27.06 E-value=51 Score=29.84 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=25.8
Q ss_pred eCCcEEEEEecchHH-HHHHHHHHHHhCCCceEEeecC
Q 004923 585 EGERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 585 eG~dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+..|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 467999999997643 3456677889999999998854
No 368
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=26.97 E-value=1.5e+02 Score=27.66 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCcc
Q 004923 602 LAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRY 681 (723)
Q Consensus 602 l~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~ 681 (723)
-.|++.|++.||++.-- .-+.++.+. +.....||+++++..- +... +........-.++|.+
T Consensus 41 ~~a~~~l~e~Gid~~~~---~~~~l~~~~----~~~~D~vitm~~~~~~-----~~~~------~p~~~~~~~w~i~DP~ 102 (129)
T TIGR02691 41 PNAVKAMKEVGIDISNQ---TSDLIDLDI----LNKADLVVTLCGDARD-----KCPA------TPPHVKREHWGLDDPA 102 (129)
T ss_pred HHHHHHHHHcCCCcCCc---ccccCChhh----cccCCEEEEeCchhcc-----CCCc------cCCCCeEEECCCCCCC
Confidence 45667788889876322 223333332 2456789999754210 0000 0011223344778888
Q ss_pred ccCCCHHHHHHHcCCCHHHHHHHHH
Q 004923 682 IDHGSPADQLAQAGLTPSHIAATVF 706 (723)
Q Consensus 682 ~~~g~~~el~~~~gl~~e~I~~~i~ 706 (723)
+..|+.++.++.|--.-+.|..++.
T Consensus 103 ~~~g~~~~~~~~~~~~~~~I~~~v~ 127 (129)
T TIGR02691 103 RAEGTEEEKWAVFRRVRDEIKERVK 127 (129)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887666555555555544
No 369
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=26.96 E-value=4e+02 Score=26.52 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=43.0
Q ss_pred eEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcc-eEEeecCCccccCCCHHHH
Q 004923 615 LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK-WRPLVLPDRYIDHGSPADQ 690 (723)
Q Consensus 615 v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~-~~~~~~~d~~~~~g~~~el 690 (723)
+.++.+.- ++.+.+.+++.++....++++.+.. .. -..+++.+.+.|..+.++- ..+++.+++.+..++.+++
T Consensus 120 ~~~is~~~-~~~~~~~l~~~~~~~~~~v~l~~~~-~~-~~~i~~~L~~~g~~~~~~~v~~~l~~~~E~i~~~~l~~~ 193 (210)
T PRK05787 120 VVFTTSHG-RGPNFEELEDLLKNGRKVIMLPDPR-FG-PKEIAAELLERGKLERRIVVGENLSYPDERIHKLTLSEI 193 (210)
T ss_pred cEEEeecC-CCcchHHHHHHHHcCCeEEEEcCCC-CC-HHHHHHHHHhCCCCCcEEEEEEeCCCCCeEEEeCCHHHH
Confidence 44555432 3334345667776667778777543 22 3577778877763222333 3588888877766666554
No 370
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=26.70 E-value=89 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=28.5
Q ss_pred eeCCcEEEEEecchH-HHHHHHHHHHHhCCCceEEeecC
Q 004923 584 IEGERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 584 ~eG~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
.+..|++|+++|... ..--+..+.|+++||.+++.|.+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 345689999999864 33345567788999999998854
No 371
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=26.65 E-value=1.1e+02 Score=27.79 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
....|.+|.+.|++.|+.++++|+.- .|++.+.+.++++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 45688999999999999999999864 688888888776543
No 372
>PTZ00062 glutaredoxin; Provisional
Probab=26.46 E-value=2.2e+02 Score=28.93 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-----CCCEEEEEcCCCCCChHHHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGSIGGFGSHV 656 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-----~~~~vvvvEe~~~gG~g~~v 656 (723)
...|+|++-|+ ....|..+.+.|++.||+.+.+|+.. |. .+++.++ .+-..|.+..-..||+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~-~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l- 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DP-DLREELKVYSNWPTYPQLYVNGELIGGHDII- 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CH-HHHHHHHHHhCCCCCCeEEECCEEEcChHHH-
Confidence 34678888774 46789999999999999999999873 32 2333332 2235566776557888633
Q ss_pred HHHHHHcCCC
Q 004923 657 VQFLAQDGLL 666 (723)
Q Consensus 657 ~~~l~~~g~~ 666 (723)
..+.++|-|
T Consensus 186 -~~l~~~G~L 194 (204)
T PTZ00062 186 -KELYESNSL 194 (204)
T ss_pred -HHHHHcCCh
Confidence 234455543
No 373
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=25.95 E-value=1.4e+02 Score=27.61 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHhCCCceEEeecCccc
Q 004923 595 GTAVQSCLAASALLESNGLRLTVADARFCK 624 (723)
Q Consensus 595 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ik 624 (723)
|+.-..|.+.++.|++.|++++++++....
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 444456666677788889999999988654
No 374
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.93 E-value=1.6e+02 Score=28.11 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=37.8
Q ss_pred eCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 585 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
+|++++|++-+..+..-+ +.+|.++|..+.+++-++. .+.+.++..+.||+.--
T Consensus 27 ~gk~v~VvGrs~~vG~pl--a~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPL--QCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEecC
Confidence 477888887777776554 5667788999999886652 35566677776665553
No 375
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=25.92 E-value=1.6e+02 Score=33.04 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=54.7
Q ss_pred EEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC-CC-CCCh--HHHHHHHHHHcCC
Q 004923 591 LLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE-GS-IGGF--GSHVVQFLAQDGL 665 (723)
Q Consensus 591 Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe-~~-~gG~--g~~v~~~l~~~g~ 665 (723)
||++-.+=..+++..+.|+.+|.+|+.+.+..=--.|.+.+++.++....+|.|=. |. +|-+ =.+|++.+.+.+.
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i 172 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGI 172 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCC
Confidence 56777777888999999988899999999887666788888888876666666654 33 3432 3466666666653
No 376
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=1.8e+02 Score=24.61 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=39.2
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccH-HHHHHHh-cCCCEEEEEcCCCCCC
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH-ALIRSLA-KSHEVLITVEEGSIGG 651 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~-~~i~~~~-~~~~~vvvvEe~~~gG 651 (723)
|+|.+.= ....|..|.+.|.+.|+..+.+++..-.+-.. +.+++.- ..+-.+|++.+...||
T Consensus 3 v~iyt~~-~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTKP-GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEECC-CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 4444432 36678999999999999999999886544122 2333331 2344677788755454
No 377
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=25.88 E-value=1.7e+02 Score=28.97 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcc--------cCceEEeeeCCcEEEEEecchHHHHHHHH
Q 004923 534 EAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE--------VGKGRILIEGERVALLGYGTAVQSCLAAS 605 (723)
Q Consensus 534 ~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~--------~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa 605 (723)
-+|...++..|+- .++-+||.--.. +..+....-....+++ .++...+.+-.+|.|++-.+.-..|.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~E-m~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGE-MEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GG-GGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecCh-HHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3677888888875 678888853322 1111000000001111 11112344455899999999998999999
Q ss_pred HHHHhCCCceEEeecCccccccHHHHHHH------hcCCCEEEEEcCCCCCChHHHHHH
Q 004923 606 ALLESNGLRLTVADARFCKPLDHALIRSL------AKSHEVLITVEEGSIGGFGSHVVQ 658 (723)
Q Consensus 606 ~~L~~~Gi~v~VId~~~ikP~d~~~i~~~------~~~~~~vvvvEe~~~gG~g~~v~~ 658 (723)
++|.++|+.+-+|+.. ++ +.+.+.+. ++-.+.+|--|++..-|+-+.++.
T Consensus 102 ~~L~~~gi~~v~Vs~~--~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ 157 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSPN--KP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAA 157 (172)
T ss_dssp HHHHHHT--EEEEE-S--S----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHH
T ss_pred HHHHHCCCCEEEEEec--CC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHH
Confidence 9999999999988822 22 12222221 123356777788776666655543
No 378
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=25.85 E-value=1.3e+02 Score=29.44 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=35.8
Q ss_pred CcEEEEEecchHH----HHHHHHHHHHhCCC---ceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 587 ERVALLGYGTAVQ----SCLAASALLESNGL---RLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 587 ~dv~Iva~Gs~v~----~al~Aa~~L~~~Gi---~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
..++|+++|+.+. .-...+++|++... ++.|+|.-+.-|.-. ..+...+.+|+||.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~l~----~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPNLL----GLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHHHH----HHhcCCCcEEEEEe
Confidence 4688999998653 33456777776543 688999998754332 23334455666665
No 379
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=25.70 E-value=2.9e+02 Score=26.75 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.6
Q ss_pred cEEEEEecchHH----HHHHHHHHHHhC-C--CceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 588 RVALLGYGTAVQ----SCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~Gs~v~----~al~Aa~~L~~~-G--i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
+++|+++|+.+. .-..+++.|++. . -.++++|.-+.-+ +.+ ..+...+.+|+|+..
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~~---~ll-~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---ELL-GDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccHH---HHH-HHHhCCCEEEEEEec
Confidence 478999999873 556788888653 3 3588999887532 232 333456778888864
No 380
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=25.68 E-value=3e+02 Score=28.44 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN 247 (723)
+.+++|.+++ +.++++...=..++ ...|.|..++..+.|+++++-+-
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R 95 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQR 95 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEEC
Confidence 6677777775 56677777777777 77899999999999987777544
No 381
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=25.57 E-value=3e+02 Score=27.77 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=38.1
Q ss_pred CcEEEEEecchHH----HHHHHHHHHHhC---CCceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 587 ERVALLGYGTAVQ----SCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 587 ~dv~Iva~Gs~v~----~al~Aa~~L~~~---Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
.+++|++.|+.+. .-..+++.|+++ .-.++++|.-+.-+ +.+ ..+...+.+|+||.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~---~ll-~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL---NLL-GYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH---HHH-HHHcCCCEEEEEEC
Confidence 4689999999773 556778888654 23488999887533 333 34446677777775
No 382
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=25.23 E-value=3.8e+02 Score=29.21 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEE
Q 004923 325 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 359 (723)
Q Consensus 325 G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~ 359 (723)
|+.++.| .|..++...++.+.+ .++|++|-
T Consensus 142 gl~V~~P---sd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 142 GLQIVAC---STPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 7777778 567777777877765 47899875
No 383
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=25.12 E-value=2.6e+02 Score=27.86 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHh-CCCceEEeecCccccccH--------------HHHHHHhcCCCEEEEEcCCCCCChHHHHHHH
Q 004923 595 GTAVQSCLAASALLES-NGLRLTVADARFCKPLDH--------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 659 (723)
Q Consensus 595 Gs~v~~al~Aa~~L~~-~Gi~v~VId~~~ikP~d~--------------~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~ 659 (723)
|+.-..|.++++.+++ .|+++++++++...|-+. ..+ +.+...+.+|+.=--+.|++...+..+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD~ii~gsPty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATP-DELADYDAIIFGTPTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCH-HHHHhCCEEEEEecccCCCchHHHHHH
Confidence 3345567777788887 899999999974333111 112 333455555544433468888888777
Q ss_pred HHHc
Q 004923 660 LAQD 663 (723)
Q Consensus 660 l~~~ 663 (723)
+..-
T Consensus 92 ld~~ 95 (200)
T PRK03767 92 LDQT 95 (200)
T ss_pred HHHh
Confidence 7654
No 384
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=24.95 E-value=3.9e+02 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=24.0
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEE
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 359 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~ 359 (723)
+..+ |+.++.| -|..+....++.+.+ .++|++|.
T Consensus 275 ~~~iPgl~V~~P---~d~~d~~~ll~~ai~--~~~Pv~il 309 (464)
T PRK11892 275 YSHIPGLKVVAP---YSAADAKGLLKAAIR--DPNPVIFL 309 (464)
T ss_pred HhhCCCCEEEEe---CCHHHHHHHHHHHhh--CCCcEEEE
Confidence 4455 7888888 566777777777765 46899864
No 385
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=24.69 E-value=3e+02 Score=25.25 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=44.4
Q ss_pred EEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcccC---ceEEeeeCCcEEEEEecchHHHHHH
Q 004923 527 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVG---KGRILIEGERVALLGYGTAVQSCLA 603 (723)
Q Consensus 527 ~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~g---k~~vl~eG~dv~Iva~Gs~v~~al~ 603 (723)
.|+.|.+.+|+..+++.|.+ .+.|+.++-............ ...-+... +-.-+.+....+.+..|.......+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 48999999999999999965 577888876554432221100 11111222 2122223356667787887776554
Q ss_pred HH
Q 004923 604 AS 605 (723)
Q Consensus 604 Aa 605 (723)
..
T Consensus 80 ~l 81 (139)
T PF01565_consen 80 AL 81 (139)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 386
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=24.68 E-value=6.2e+02 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=21.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 004923 325 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (723)
Q Consensus 325 G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v 360 (723)
|+.++.| .|..++...++.+... .++|++|.+
T Consensus 133 ~~~v~~P---~~~~e~~~~l~~a~~~-~~~p~~i~~ 164 (168)
T smart00861 133 GLKVVAP---SDPAEAKGLLRAAIRR-DDGPPVIRL 164 (168)
T ss_pred CcEEEec---CCHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 5666667 6777777777777642 357877654
No 387
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=24.57 E-value=2.9e+02 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=35.4
Q ss_pred cEEEEEecchHH----HHHHHHHHHHhCCC-ceEEeecCccccccHHHHHHHhc-CCCEEEEEcC
Q 004923 588 RVALLGYGTAVQ----SCLAASALLESNGL-RLTVADARFCKPLDHALIRSLAK-SHEVLITVEE 646 (723)
Q Consensus 588 dv~Iva~Gs~v~----~al~Aa~~L~~~Gi-~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe 646 (723)
+++|+++|+... .-..+++.|++... .++++|.-+ -|++. +..+.. +.+.+|+||.
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~--~~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEND--IVAIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHH--HHHHHhcCCCEEEEEEC
Confidence 367899998762 55677888876532 588899887 34332 222221 3467787775
No 388
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=24.34 E-value=2.6e+02 Score=26.15 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=36.0
Q ss_pred EEEecchHH----HHHHHHHHHHhCC--CceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC
Q 004923 591 LLGYGTAVQ----SCLAASALLESNG--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 648 (723)
Q Consensus 591 Iva~Gs~v~----~al~Aa~~L~~~G--i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~ 648 (723)
|+++|+... .-..+++.|++.. -.++++|.-+.- .+. ...++..+.+|+|+...
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~l-~~~l~~~d~viiVDA~~ 61 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LEL-LDLLEGADRVIIVDAVD 61 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HHH-HHHHhcCCeEEEEECcc
Confidence 678888762 5567788887663 468899988762 223 33444577888888743
No 389
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=24.02 E-value=1.2e+02 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEEEecch--HHHHHHHHHHHHhCCCceEEeecC
Q 004923 589 VALLGYGTA--VQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 589 v~Iva~Gs~--v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
|+|++.|+. ++.++..++.|+++|.+|.+...+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 578888885 678899999999999999977655
No 390
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=23.90 E-value=3.3e+02 Score=30.52 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=36.3
Q ss_pred EecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEE
Q 004923 593 GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLI 642 (723)
Q Consensus 593 a~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vv 642 (723)
.||+.-..|...++-|.+.|++|.++++..- |...|.+.+...+.++
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~v 302 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLV 302 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEE
Confidence 6788888888999999999999999999876 5666655554544444
No 391
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=23.69 E-value=2.4e+02 Score=26.99 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=37.3
Q ss_pred CcEEEEEecchHH----HHHHHHHHHHhCC----CceEEeecCccccccHHHHHH--HhcCCCEEEEEcCC
Q 004923 587 ERVALLGYGTAVQ----SCLAASALLESNG----LRLTVADARFCKPLDHALIRS--LAKSHEVLITVEEG 647 (723)
Q Consensus 587 ~dv~Iva~Gs~v~----~al~Aa~~L~~~G----i~v~VId~~~ikP~d~~~i~~--~~~~~~~vvvvEe~ 647 (723)
++++|+++|+... .-..+++.|++.+ -.++++|.-+.-| +.+.. .......+|+||..
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 4688999999763 5567888887432 2488898776433 11211 23466788888864
No 392
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.69 E-value=3.2e+02 Score=22.46 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=41.8
Q ss_pred EEEEEecchHHHHHHHHHHHHhC-CCceEEeecCccccccHHHH--HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcC
Q 004923 589 VALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALI--RSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDG 664 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VId~~~ikP~d~~~i--~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g 664 (723)
+.+++.|+....+..+...|.+- |+.+.++.... .... .....+...+|++-......--..+++.+.++|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g 74 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATE-----LEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELG 74 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcH-----HHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999888877 88876655322 1111 123345567777765432221222344454443
No 393
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.43 E-value=1.4e+02 Score=26.45 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
....|.+|.+.|++.||..+.+|+.. .|++.+.+.+++...
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~ 48 (105)
T cd02977 8 NCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKL 48 (105)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhc
Confidence 45789999999999999999999873 677888887776543
No 394
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=23.05 E-value=6.6e+02 Score=28.31 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++++|.+++ +.++++.+.-..++ ...|.+..|+....|+++++ -|+
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~-~~R 115 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNL-VNR 115 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEE-ecc
Confidence 37788888876 55677777777777 78899999999999965554 444
No 395
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.65 E-value=1.4e+02 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcC
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~ 637 (723)
.....|.+|.+.|++.||..+++|+.. .|++.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHH
Confidence 446789999999999999999999864 67788888777654
No 396
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=22.55 E-value=3.9e+02 Score=31.87 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=49.8
Q ss_pred hHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 226 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 226 ~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
..-|+.+|+..++|+++|.--.. +.+. .|||+-- +++.++.
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDS-IgvG---EDGPTHq---------------------------------PiEqLa~-- 481 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDS-IGVG---EDGPTHQ---------------------------------PVEQLAS-- 481 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCc-eecC---CCCCCCC---------------------------------cHHHHHH--
Confidence 44589999999999999998775 2321 2666441 1233332
Q ss_pred HHHhhcccCCCccchhhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 306 DEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
+++. ++.+++|.|++. ...+.+.+... .++|++|...-
T Consensus 482 ---------------LRaiPN~~V~RPaD~~E---t~~aw~~Al~~-~~gPt~LiltR 520 (663)
T COG0021 482 ---------------LRAIPNLSVIRPADANE---TAAAWKYALER-KDGPTALILTR 520 (663)
T ss_pred ---------------hhccCCceeEecCChHH---HHHHHHHHHhc-CCCCeEEEEec
Confidence 2332 667889987654 44456655543 47999987653
No 397
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.44 E-value=2.6e+02 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=21.3
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+|.|+.-|.. |..+.+.+++.|+++-+|+-.
T Consensus 4 kvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 4 KVLIANRGEI---AVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp EEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG
T ss_pred EEEEECCCHH---HHHHHHHHHHhCCcceeccCc
Confidence 5667777766 556666677789998887654
No 398
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.20 E-value=2e+02 Score=26.80 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=22.7
Q ss_pred hhccCCeE-EEecCCCCH-HHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 321 FEELGLYY-IGPVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 321 fea~G~~~-~~~vDGhd~-~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
++..|+.| ..||-|-.+ ++=+++++++... .++|++.+|+|
T Consensus 54 a~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e-aegPVlayCrs 96 (130)
T COG3453 54 AEAAGLTYTHIPVTGGGITEADVEAFQRALDE-AEGPVLAYCRS 96 (130)
T ss_pred HHhcCCceEEeecCCCCCCHHHHHHHHHHHHH-hCCCEEeeecC
Confidence 45556543 226765333 2223344444432 57999999985
No 399
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=22.18 E-value=2.9e+02 Score=29.34 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=47.5
Q ss_pred HHHHhhcCCCC---EEEEeeCC--CC-CC-CCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCE
Q 004923 483 VVHDVDLQKLP---VRFAMDRA--GL-VG-ADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPS 552 (723)
Q Consensus 483 i~~~~a~~~lp---v~~v~~~~--G~-~G-~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~ 552 (723)
-+|.+++.++| +++++-.- |+ +- .+..+-..+.|.+-.-.+|.+. +.=.|+.++..+++.|++. -++|+
T Consensus 161 alNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~-VdG~D~~aV~~a~~~A~~~~r~g~gp~ 239 (265)
T cd02016 161 TLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFH-VNGDDPEAVVRATRLALEYRQKFKKDV 239 (265)
T ss_pred HHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 46788899998 88888443 33 21 1222222345555555677764 4778999999999888763 45798
Q ss_pred EEEe
Q 004923 553 CFRY 556 (723)
Q Consensus 553 ~ir~ 556 (723)
+|-+
T Consensus 240 lIe~ 243 (265)
T cd02016 240 VIDL 243 (265)
T ss_pred EEEE
Confidence 8754
No 400
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.15 E-value=3.9e+02 Score=27.49 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCceEEeecCccccccH--------HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 599 QSCLAASALLESNGLRLTVADARFCKPLDH--------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 599 ~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~--------~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
..+..+++.+.++|..++++|++-+-.++. ..+++.++....+|++=--+.+++...+.+.+
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKNai 113 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHHHH
Confidence 355556667776799999999875422221 23455555566555444334455555554443
No 401
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=21.64 E-value=4.7e+02 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCC-CCCcc-eEEeecCCccccCCCHHHHHH
Q 004923 632 RSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL-DGTVK-WRPLVLPDRYIDHGSPADQLA 692 (723)
Q Consensus 632 ~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~-~~~~~-~~~~~~~d~~~~~g~~~el~~ 692 (723)
..+.+....+++.... .--..+++.|.+.|+. +.++- ..+++.+++.+..++.+++.+
T Consensus 171 ~~~~~~~~t~vl~~~~---~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~ 230 (263)
T PLN02625 171 EAAADPDTTLVVYMGL---GTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAE 230 (263)
T ss_pred HHHhCCCCeEEEECch---hhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHH
Confidence 3344444456666532 2244677777777763 22232 468888988888787777654
No 402
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=21.56 E-value=2.8e+02 Score=21.45 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCcc
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFC 623 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~i 623 (723)
..-..|..|.+.|++.|++.+++|+..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 3457899999999999999999999754
No 403
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=21.43 E-value=6.4e+02 Score=25.97 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=42.1
Q ss_pred cccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcC--C-----C
Q 004923 625 PLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG--L-----T 697 (723)
Q Consensus 625 P~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~g--l-----~ 697 (723)
+++.+.+.+.+.....++..-. ..|++..+.+.++. | .++. +. ..+...++.+... + +
T Consensus 266 ~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~-G-----~pvI--~~-----~~~~~~~~~~~~~~g~~~~~~~ 330 (377)
T cd03798 266 AVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMAC-G-----LPVV--AT-----DVGGIPEIITDGENGLLVPPGD 330 (377)
T ss_pred CCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhc-C-----CCEE--Ee-----cCCChHHHhcCCcceeEECCCC
Confidence 4566777777777765553322 25666666676653 2 2221 11 1233345554433 2 7
Q ss_pred HHHHHHHHHHHHhcch
Q 004923 698 PSHIAATVFNILGQTR 713 (723)
Q Consensus 698 ~e~I~~~i~~ll~~~~ 713 (723)
++++++++.+++....
T Consensus 331 ~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 331 PEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHHHHhcCcH
Confidence 8899999999886543
No 404
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=21.43 E-value=1.4e+02 Score=29.32 Aligned_cols=58 Identities=22% Similarity=0.448 Sum_probs=34.6
Q ss_pred eCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccH-------HHHHHHhcCCCEEEEEc
Q 004923 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH-------ALIRSLAKSHEVLITVE 645 (723)
Q Consensus 585 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~-------~~i~~~~~~~~~vvvvE 645 (723)
.|+.+++++||..-.- .|+.|+..|..|.|.+..-++-+.. ..+.++++....+|+.=
T Consensus 22 ~Gk~vvV~GYG~vG~g---~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKG---IARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTAT 86 (162)
T ss_dssp TTSEEEEE--SHHHHH---HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-S
T ss_pred CCCEEEEeCCCcccHH---HHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECC
Confidence 5788999999987653 4556777899999998875543221 23556677777666653
No 405
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.35 E-value=1.5e+02 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
.....|.+|.+.|+++||..+++|+.. .|++.+.+.++++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 345789999999999999999999874 677888888877653
No 406
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=21.13 E-value=2.2e+02 Score=26.41 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 602 LAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 602 l~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
-.|++.|++.||++. ... +++..+.+ .....||++++.
T Consensus 44 ~~a~~~l~~~Gid~~--~~~--~~l~~~~~----~~~DlIv~m~~~ 81 (140)
T smart00226 44 PRAVEVLKEHGIALS--HHA--SQLTSSDF----KNADLVLAMDHS 81 (140)
T ss_pred HHHHHHHHHcCcCcc--cee--ccCCHHHH----HhCCEEEEeCHH
Confidence 356667788899864 222 25555443 456899999875
No 407
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.97 E-value=1.7e+02 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=23.1
Q ss_pred CeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEE
Q 004923 210 NNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVIL 244 (723)
Q Consensus 210 ~~vv~viGDG-a~~~G~~~EAln~A~~~~~nli~Il 244 (723)
.++++|+|++ +..+|..+++...+...+-.+-+|-
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667777766 8888887776666665554444444
No 408
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=20.65 E-value=1.1e+02 Score=37.52 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred HHHhCCCceEEeecCccccccHHHHHHHhcC-CCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCc-ceEEeecCCcccc-
Q 004923 607 LLESNGLRLTVADARFCKPLDHALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTV-KWRPLVLPDRYID- 683 (723)
Q Consensus 607 ~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~-~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~-~~~~~~~~d~~~~- 683 (723)
.++++|.++-|||+|.-. + ++. ...-|-+--+.-+-|.-.+++.|.++++.|... .=...|. +.|-.
T Consensus 199 ~a~~~G~klIvIDPr~t~-----t----A~~aaD~~l~irPGTD~AL~lam~~~ii~e~l~D~~fi~~~t~gf-e~~~~~ 268 (770)
T TIGR00509 199 RLKAKGKRVISIDPVRTE-----T----AEFFGAEWIPPNPQTDVALMLGLAHTLVTEGLYDKDFLAKYTSGF-EKFLPY 268 (770)
T ss_pred HHHHcCCEEEEEcCCCCc-----c----hhhccCeEeCcCCCcHHHHHHHHHHHHHHcccccHHHHHHHcccH-HHHHHH
Confidence 345689999999998532 1 111 123333444444445555666666666543211 0000111 11110
Q ss_pred --------CCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 684 --------HGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 684 --------~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
.-+++..-+..|++++.|.+.+..+..
T Consensus 269 l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~ 303 (770)
T TIGR00509 269 LLGETDGTPKTAEWASKITGVPAETIKELARLFAS 303 (770)
T ss_pred hcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 126788888999999999999887654
No 409
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=20.59 E-value=3.6e+02 Score=25.43 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEecchHH----HHHHHHHHHHhCC---CceEEeecCccccccHHHHHHHhcCCCEEEEEcCC
Q 004923 591 LLGYGTAVQ----SCLAASALLESNG---LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (723)
Q Consensus 591 Iva~Gs~v~----~al~Aa~~L~~~G---i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~ 647 (723)
|+++|+... .-..+++.|++.. -.++++|.-+.- .+.+ ..+..++.+|+|+..
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~---~~l~-~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG---LELL-DAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhCCCEEEEEEcc
Confidence 678888752 4566777787652 358888887753 2233 333467788888864
No 410
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=20.50 E-value=3.8e+02 Score=26.90 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=49.4
Q ss_pred ecchHHHHHHHHHHHHhCCCceEEeecCcc--ccc----------------c-HHHHHHHhcCCCEEEEEcCCCCCChHH
Q 004923 594 YGTAVQSCLAASALLESNGLRLTVADARFC--KPL----------------D-HALIRSLAKSHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 594 ~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~i--kP~----------------d-~~~i~~~~~~~~~vvvvEe~~~gG~g~ 654 (723)
+|.+...+.++++.+++.|+.++++.++-. +|- | .+.|.+.+.....+|+.=--+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 578888888889999989999999998843 221 2 244555555666666655555788888
Q ss_pred HHHHHHHH
Q 004923 655 HVVQFLAQ 662 (723)
Q Consensus 655 ~v~~~l~~ 662 (723)
.+..++-.
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 88887755
No 411
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.33 E-value=1.6e+02 Score=26.53 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~ 638 (723)
....|.+|.+.|+++|+..+.+|+.. .|...+.+.++++..
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 8 KCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHc
Confidence 45689999999999999999999875 577777777766543
No 412
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.32 E-value=1.2e+02 Score=36.12 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=49.4
Q ss_pred HHHhCCCceEEeecCccccccHHHHHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCc-ceEEeecCCcc---
Q 004923 607 LLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTV-KWRPLVLPDRY--- 681 (723)
Q Consensus 607 ~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~-~~~~~~~~d~~--- 681 (723)
..+++|.++-|||++.-+ + ++.. ..-|-+--+.-.-+.-.+++.|.++++.|... .=...|. +.|
T Consensus 203 ~ar~~GaklIvIDPr~t~-----t----A~~add~~l~irPGTD~ALalam~~~ii~e~~~D~~Fv~~~t~Gf-e~~~~~ 272 (609)
T cd02769 203 ALKDRGIRFISISPLRDD-----T----AAELGAEWIAIRPGTDVALMLALAHTLVTEGLHDKAFLARYTVGF-DKFLPY 272 (609)
T ss_pred HHHhCCCEEEEEcCCCCc-----c----hhhhcCcEeccCCCcHHHHHHHHHHHHHHcCCccHHHHHHHccCH-HHHHHH
Confidence 345689999999988432 1 1111 12233333333444555555565555433110 0000010 111
Q ss_pred c------cCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 682 I------DHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 682 ~------~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
. ..-+++..-+..|++++.|.+.+..+..
T Consensus 273 l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~ 307 (609)
T cd02769 273 LLGESDGVPKTPEWAAAICGIPAETIRELARRFAS 307 (609)
T ss_pred hcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 1 0125677788899999999999887754
No 413
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.26 E-value=3.9e+02 Score=23.95 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=35.5
Q ss_pred EEEEEecchHHHHHHHHHHHHhCC-CceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 589 VALLGYGTAVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~G-i~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
|.|++.|.....|..++..|.+.| +.+.+++.. +.......+.+...+|++-.
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~I~iS~ 55 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAAS-----EFRYRRPLLDEDTLVIAISQ 55 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhcCCceEEEehh-----HhhhcCCCCCCCcEEEEEeC
Confidence 778999999999999999998775 888777621 11111122445566776654
No 414
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=20.12 E-value=3e+02 Score=26.04 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=32.5
Q ss_pred EEEEEecchHH----HHHHHHHHHHhCCC--ceEEeecCccccccHHHHHHHh-cCCCEEEEEcC
Q 004923 589 VALLGYGTAVQ----SCLAASALLESNGL--RLTVADARFCKPLDHALIRSLA-KSHEVLITVEE 646 (723)
Q Consensus 589 v~Iva~Gs~v~----~al~Aa~~L~~~Gi--~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe 646 (723)
++|+++|+... .-..+++.|++... .+.++|.-+. |++. +..+. .+.+.+|+|+.
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~--~~~~~~~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENF--TVAIRELRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHH--HHHHHhcCCCEEEEEEC
Confidence 36788888762 45667777766532 4778887775 4332 21111 13567777775
No 415
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=20.05 E-value=6.2e+02 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEE
Q 004923 325 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 359 (723)
Q Consensus 325 G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~ 359 (723)
|+.++.| -|..++..+++.+.+ .++|++|.
T Consensus 173 n~~V~~P---sd~~e~~~~l~~a~~--~~~P~~i~ 202 (355)
T PTZ00182 173 GLKVVAP---SDPEDAKGLLKAAIR--DPNPVVFF 202 (355)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 7778878 566677777777765 47899875
Done!