Query 004923
Match_columns 723
No_of_seqs 410 out of 2757
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3E-114 1E-118 1007.5 53.7 616 71-710 7-623 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 2E-113 5E-118 1001.1 51.5 616 70-710 4-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 2E-101 8E-106 894.1 50.3 552 84-706 3-615 (616)
4 3l84_A Transketolase; TKT, str 100.0 8E-101 3E-105 887.4 43.2 536 89-707 1-631 (632)
5 3rim_A Transketolase, TK; TPP, 100.0 4E-100 1E-104 887.4 45.0 545 91-710 19-699 (700)
6 3m49_A Transketolase; alpha-be 100.0 1E-99 3E-104 885.4 41.2 553 86-709 21-690 (690)
7 3kom_A Transketolase; rossmann 100.0 3.5E-98 1E-102 870.7 41.6 546 91-708 3-662 (663)
8 1itz_A Transketolase; calvin c 100.0 1.9E-97 6E-102 870.2 47.3 550 83-707 5-674 (675)
9 3uk1_A Transketolase; structur 100.0 6.4E-98 2E-102 871.5 41.4 541 94-709 45-710 (711)
10 2e6k_A Transketolase; structur 100.0 1.6E-95 6E-100 851.3 43.2 534 96-708 10-650 (651)
11 2r8o_A Transketolase 1, TK 1; 100.0 2.3E-95 8E-100 852.6 43.3 545 94-711 4-665 (669)
12 1gpu_A Transketolase; transfer 100.0 8.9E-95 3.1E-99 848.2 46.4 540 93-713 6-668 (680)
13 1r9j_A Transketolase; domains, 100.0 8E-94 2.7E-98 838.6 44.4 540 93-712 5-658 (673)
14 2qtc_A Pyruvate dehydrogenase 100.0 8.5E-92 2.9E-96 834.4 48.1 610 73-711 56-858 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 1.7E-71 6E-76 648.3 37.1 563 82-711 38-787 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 6.6E-61 2.2E-65 571.5 39.4 551 88-706 194-930 (933)
17 1ik6_A Pyruvate dehydrogenase; 100.0 2.1E-60 7.1E-65 519.6 24.4 338 361-710 10-368 (369)
18 2yic_A 2-oxoglutarate decarbox 100.0 5.1E-56 1.7E-60 526.9 34.9 538 88-688 114-853 (868)
19 2xt6_A 2-oxoglutarate decarbox 100.0 4.8E-55 1.6E-59 530.2 36.4 538 88-688 359-1098(1113)
20 1w85_B Pyruvate dehydrogenase 100.0 4.5E-55 1.6E-59 471.0 29.4 304 399-710 3-323 (324)
21 2ozl_B PDHE1-B, pyruvate dehyd 100.0 4E-55 1.4E-59 473.7 29.0 306 398-710 14-340 (341)
22 2bfd_B 2-oxoisovalerate dehydr 100.0 3.6E-55 1.2E-59 474.7 24.6 318 384-710 6-341 (342)
23 1umd_B E1-beta, 2-OXO acid deh 100.0 2.1E-54 7.3E-59 465.9 28.4 303 399-710 4-323 (324)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 1.1E-52 3.7E-57 455.1 26.6 299 399-709 5-336 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 5.8E-29 2E-33 271.7 24.7 236 86-379 30-283 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 5.2E-24 1.8E-28 232.0 23.9 224 86-371 38-275 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 4.5E-24 1.5E-28 231.9 22.7 229 82-371 24-270 (365)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 3.1E-23 1.1E-27 228.3 24.1 228 87-372 50-295 (400)
29 1yd7_A 2-keto acid:ferredoxin 99.9 1.6E-24 5.6E-29 238.7 10.1 284 400-709 24-394 (395)
30 1qs0_A 2-oxoisovalerate dehydr 99.9 2.5E-22 8.6E-27 221.0 24.3 229 87-372 69-315 (407)
31 2c42_A Pyruvate-ferredoxin oxi 99.8 1.1E-16 3.6E-21 197.4 28.4 253 441-711 54-384 (1231)
32 4feg_A Pyruvate oxidase; carba 99.6 1.9E-15 6.5E-20 175.5 11.8 197 118-387 369-568 (603)
33 3ju3_A Probable 2-oxoacid ferr 99.6 1E-14 3.4E-19 133.5 11.5 106 585-710 12-117 (118)
34 2uz1_A Benzaldehyde lyase; thi 99.4 5.6E-13 1.9E-17 153.5 14.8 179 119-366 369-548 (563)
35 1ozh_A ALS, acetolactate synth 99.4 2.1E-12 7.3E-17 148.7 16.5 175 120-367 371-546 (566)
36 1t9b_A Acetolactate synthase, 99.3 9.3E-13 3.2E-17 154.5 8.0 134 185-371 511-644 (677)
37 1ybh_A Acetolactate synthase, 99.3 1.4E-12 4.7E-17 151.1 8.5 141 185-370 424-564 (590)
38 2iht_A Carboxyethylarginine sy 99.3 3.6E-12 1.2E-16 147.0 10.3 126 185-364 434-561 (573)
39 1q6z_A BFD, BFDC, benzoylforma 99.3 4.8E-12 1.7E-16 144.5 10.6 127 185-365 400-526 (528)
40 2vk8_A Pyruvate decarboxylase 99.3 2.4E-12 8.1E-17 148.3 7.1 131 185-367 411-545 (563)
41 3eya_A Pyruvate dehydrogenase 99.3 3.5E-12 1.2E-16 146.4 8.5 130 185-368 404-533 (549)
42 2pgn_A Cyclohexane-1,2-dione h 99.3 2.9E-12 9.8E-17 148.3 7.7 180 119-371 374-554 (589)
43 1ovm_A Indole-3-pyruvate decar 99.3 3.6E-12 1.2E-16 146.3 8.4 125 185-366 406-534 (552)
44 1v5e_A Pyruvate oxidase; oxido 99.3 5.2E-12 1.8E-16 146.2 9.6 130 185-366 411-541 (590)
45 2pan_A Glyoxylate carboligase; 99.3 4.2E-12 1.4E-16 147.8 8.0 138 185-368 440-584 (616)
46 2vbi_A Pyruvate decarboxylase; 99.2 6.4E-12 2.2E-16 144.7 8.3 126 185-368 407-537 (566)
47 2vbf_A Branched-chain alpha-ke 99.2 1.2E-11 3.9E-16 142.7 8.8 126 185-367 423-554 (570)
48 2nxw_A Phenyl-3-pyruvate decar 99.2 1.5E-11 5.1E-16 141.7 8.1 124 185-366 420-544 (565)
49 2wvg_A PDC, pyruvate decarboxy 99.2 1.9E-11 6.5E-16 140.9 8.4 126 185-368 411-545 (568)
50 2c31_A Oxalyl-COA decarboxylas 99.2 3.3E-11 1.1E-15 138.8 10.0 126 185-367 424-550 (568)
51 2q28_A Oxalyl-COA decarboxylas 99.2 5.7E-11 2E-15 136.7 11.5 127 185-367 419-547 (564)
52 3hww_A 2-succinyl-5-enolpyruvy 99.2 2.7E-11 9.1E-16 139.3 8.6 126 186-366 416-541 (556)
53 2x7j_A 2-succinyl-5-enolpyruvy 99.1 2.8E-11 9.4E-16 140.5 6.4 130 185-366 453-582 (604)
54 3lq1_A 2-succinyl-5-enolpyruvy 99.0 1.6E-10 5.4E-15 133.4 7.1 128 190-370 439-566 (578)
55 2c42_A Pyruvate-ferredoxin oxi 98.2 2.5E-06 8.6E-11 105.6 9.0 116 209-364 953-1070(1231)
56 1v5e_A Pyruvate oxidase; oxido 92.0 0.3 1E-05 56.0 8.5 111 445-560 47-165 (590)
57 2wvg_A PDC, pyruvate decarboxy 91.0 2.2 7.6E-05 48.3 14.5 115 442-560 43-170 (568)
58 1ozh_A ALS, acetolactate synth 90.9 1 3.4E-05 51.2 11.4 113 442-559 50-170 (566)
59 2pan_A Glyoxylate carboligase; 90.7 1.8 6E-05 49.7 13.3 113 442-559 67-188 (616)
60 1ybh_A Acetolactate synthase, 90.5 0.96 3.3E-05 51.7 10.8 113 442-559 52-172 (590)
61 2iht_A Carboxyethylarginine sy 90.0 0.93 3.2E-05 51.6 10.1 115 441-559 49-171 (573)
62 2vbi_A Pyruvate decarboxylase; 90.0 2 6.8E-05 48.7 12.8 114 442-560 43-170 (566)
63 2nxw_A Phenyl-3-pyruvate decar 89.8 1.6 5.6E-05 49.5 11.9 151 399-559 21-186 (565)
64 2uz1_A Benzaldehyde lyase; thi 89.2 0.89 3.1E-05 51.6 9.1 121 433-559 35-164 (563)
65 3eya_A Pyruvate dehydrogenase 89.0 2.5 8.5E-05 47.7 12.7 113 442-559 43-162 (549)
66 2pgn_A Cyclohexane-1,2-dione h 89.0 1.5 5.1E-05 50.1 10.8 113 442-559 45-165 (589)
67 1t9b_A Acetolactate synthase, 88.5 2 6.7E-05 50.1 11.5 112 442-558 122-241 (677)
68 2vbf_A Branched-chain alpha-ke 87.5 3.2 0.00011 47.1 12.2 112 444-559 66-190 (570)
69 4feg_A Pyruvate oxidase; carba 87.4 2.9 0.0001 47.8 12.0 113 442-559 52-171 (603)
70 1q6z_A BFD, BFDC, benzoylforma 85.6 1.7 6E-05 48.7 8.7 115 442-560 40-162 (528)
71 2vk8_A Pyruvate decarboxylase 85.1 8.5 0.00029 43.4 14.2 114 442-560 44-171 (563)
72 3hww_A 2-succinyl-5-enolpyruvy 84.3 12 0.00041 42.2 14.9 147 405-559 10-171 (556)
73 2x7j_A 2-succinyl-5-enolpyruvy 83.5 4.5 0.00015 46.2 11.0 149 400-559 32-198 (604)
74 3lq1_A 2-succinyl-5-enolpyruvy 81.7 10 0.00035 43.0 13.0 114 442-559 51-178 (578)
75 1w85_A Pyruvate dehydrogenase 79.5 4 0.00014 43.7 8.1 101 453-556 147-263 (368)
76 2c31_A Oxalyl-COA decarboxylas 78.8 14 0.00047 41.7 12.8 115 441-559 48-171 (568)
77 2bfd_A 2-oxoisovalerate dehydr 78.6 4.2 0.00014 44.1 8.0 102 454-556 168-283 (400)
78 2q28_A Oxalyl-COA decarboxylas 77.4 16 0.00055 41.1 12.8 115 441-559 46-169 (564)
79 1ovm_A Indole-3-pyruvate decar 75.9 19 0.00064 40.4 12.8 118 440-559 42-170 (552)
80 1r9j_A Transketolase; domains, 73.4 11 0.00038 43.7 10.2 89 466-557 149-247 (673)
81 3m49_A Transketolase; alpha-be 73.4 11 0.00038 43.8 10.1 102 453-557 145-270 (690)
82 1gpu_A Transketolase; transfer 72.6 8.2 0.00028 44.8 8.9 89 466-557 149-247 (680)
83 2r8o_A Transketolase 1, TK 1; 70.8 9.8 0.00033 44.1 8.9 88 466-556 147-243 (669)
84 3ipz_A Monothiol glutaredoxin- 69.5 9.1 0.00031 33.1 6.4 69 586-655 17-90 (109)
85 1qs0_A 2-oxoisovalerate dehydr 69.5 8.4 0.00029 41.8 7.5 101 454-556 187-303 (407)
86 1umd_A E1-alpha, 2-OXO acid de 66.8 16 0.00055 38.9 9.0 108 445-556 142-265 (367)
87 2wem_A Glutaredoxin-related pr 65.6 14 0.00048 32.6 6.9 68 586-654 19-92 (118)
88 2wci_A Glutaredoxin-4; redox-a 65.5 11 0.00036 34.4 6.2 66 588-654 36-106 (135)
89 1qs0_B 2-oxoisovalerate dehydr 65.2 29 0.00098 36.4 10.5 38 321-363 138-176 (338)
90 2lqo_A Putative glutaredoxin R 63.9 11 0.00038 31.8 5.6 73 587-664 4-83 (92)
91 3kom_A Transketolase; rossmann 63.8 25 0.00086 40.6 10.4 89 466-557 149-246 (663)
92 3zyw_A Glutaredoxin-3; metal b 63.3 13 0.00044 32.4 6.2 77 586-665 15-96 (111)
93 2ozl_A PDHE1-A type I, pyruvat 62.9 10 0.00035 40.5 6.5 101 453-556 145-259 (365)
94 2e6k_A Transketolase; structur 62.6 20 0.00069 41.3 9.4 87 466-556 151-246 (651)
95 2o1s_A 1-deoxy-D-xylulose-5-ph 61.9 36 0.0012 38.8 11.3 102 192-360 373-476 (621)
96 3rim_A Transketolase, TK; TPP, 59.4 29 0.001 40.3 9.9 88 467-557 170-266 (700)
97 1wik_A Thioredoxin-like protei 59.2 12 0.00041 32.2 5.2 67 586-653 14-85 (109)
98 3uk1_A Transketolase; structur 58.6 19 0.00064 42.0 8.1 101 453-557 160-284 (711)
99 1itz_A Transketolase; calvin c 58.5 27 0.00091 40.5 9.4 89 466-557 160-258 (675)
100 3l84_A Transketolase; TKT, str 56.6 34 0.0012 39.2 9.8 100 453-557 119-239 (632)
101 1w85_B Pyruvate dehydrogenase 54.4 41 0.0014 34.9 9.3 32 325-361 141-172 (324)
102 3mos_A Transketolase, TK; thia 54.2 56 0.0019 37.3 11.1 49 193-248 368-416 (616)
103 1aba_A Glutaredoxin; electron 53.6 28 0.00096 28.2 6.4 58 597-654 13-81 (87)
104 2o1x_A 1-deoxy-D-xylulose-5-ph 52.6 41 0.0014 38.5 9.6 31 525-556 252-285 (629)
105 1jl3_A Arsenate reductase; alp 51.1 12 0.00041 34.0 3.9 107 588-712 31-138 (139)
106 2ozl_B PDHE1-B, pyruvate dehyd 50.1 53 0.0018 34.4 9.4 48 192-248 74-131 (341)
107 1ik6_A Pyruvate dehydrogenase; 48.8 44 0.0015 35.5 8.6 49 192-248 110-168 (369)
108 3gx8_A Monothiol glutaredoxin- 46.2 31 0.0011 30.3 5.8 65 586-654 15-90 (121)
109 1t1v_A SH3BGRL3, SH3 domain-bi 42.4 23 0.00079 29.2 4.1 65 588-654 3-76 (93)
110 1umd_B E1-beta, 2-OXO acid deh 41.9 1.2E+02 0.0041 31.2 10.5 46 192-245 63-118 (324)
111 2bfd_B 2-oxoisovalerate dehydr 41.3 72 0.0025 33.4 8.7 37 321-362 154-191 (342)
112 3rpe_A MDAB, modulator of drug 39.8 75 0.0026 31.1 8.0 59 600-660 48-106 (218)
113 3qmx_A Glutaredoxin A, glutare 39.5 53 0.0018 27.6 6.0 67 587-655 16-84 (99)
114 2vzf_A NADH-dependent FMN redu 39.3 49 0.0017 31.3 6.5 65 597-661 18-93 (197)
115 2wul_A Glutaredoxin related pr 39.2 81 0.0028 27.8 7.3 63 587-654 20-92 (118)
116 2q62_A ARSH; alpha/beta, flavo 39.1 57 0.002 32.5 7.1 64 599-662 52-123 (247)
117 3gx1_A LIN1832 protein; APC633 38.1 2.1E+02 0.0073 25.3 11.6 111 588-711 6-125 (130)
118 1u6t_A SH3 domain-binding glut 37.2 28 0.00097 31.0 4.0 55 600-655 18-81 (121)
119 2yan_A Glutaredoxin-3; oxidore 35.0 50 0.0017 27.7 5.2 66 588-654 18-88 (105)
120 3lyu_A Putative hydrogenase; t 33.9 45 0.0015 30.1 4.9 58 577-634 9-67 (142)
121 1sqs_A Conserved hypothetical 33.8 71 0.0024 31.3 6.8 65 598-662 18-104 (242)
122 2ct6_A SH3 domain-binding glut 33.4 38 0.0013 29.1 4.2 65 588-654 9-88 (111)
123 3u7r_A NADPH-dependent FMN red 30.1 1.1E+02 0.0038 29.1 7.3 61 600-660 20-90 (190)
124 2amj_A Modulator of drug activ 30.0 94 0.0032 29.7 6.8 60 600-661 35-94 (204)
125 2ab1_A Hypothetical protein; H 29.2 19 0.00065 32.2 1.4 39 583-621 58-98 (122)
126 3kkj_A Amine oxidase, flavin-c 28.9 38 0.0013 31.9 3.7 32 587-621 3-34 (336)
127 2fzv_A Putative arsenical resi 28.5 78 0.0027 32.3 6.1 63 599-661 76-147 (279)
128 2qtc_A Pyruvate dehydrogenase 27.7 2.2E+02 0.0075 33.9 10.6 24 533-556 365-388 (886)
129 3upl_A Oxidoreductase; rossman 27.7 1.9E+02 0.0066 31.5 9.4 120 586-717 107-232 (446)
130 1t0i_A YLR011WP; FMN binding p 27.5 1E+02 0.0035 28.6 6.5 66 597-662 16-109 (191)
131 2a5l_A Trp repressor binding p 27.4 74 0.0025 29.7 5.5 65 597-662 19-96 (200)
132 3rhb_A ATGRXC5, glutaredoxin-C 27.1 1.1E+02 0.0037 25.8 6.0 67 588-655 20-90 (113)
133 3l4e_A Uncharacterized peptida 27.1 1.6E+02 0.0053 28.4 7.8 55 586-643 27-85 (206)
134 3q2o_A Phosphoribosylaminoimid 26.7 1.1E+02 0.0036 32.3 7.1 75 584-665 12-99 (389)
135 1v95_A Nuclear receptor coacti 26.6 1.8E+02 0.0062 26.1 7.5 59 588-646 10-69 (130)
136 3hly_A Flavodoxin-like domain; 26.1 1.1E+02 0.0038 27.9 6.3 52 591-645 4-59 (161)
137 4dik_A Flavoprotein; TM0755, e 25.8 1.7E+02 0.0058 31.4 8.5 71 590-660 268-342 (410)
138 5nul_A Flavodoxin; electron tr 25.7 91 0.0031 27.3 5.5 50 595-651 10-59 (138)
139 2fz5_A Flavodoxin; alpha/beta 25.7 1.4E+02 0.0047 25.7 6.7 65 591-662 3-73 (137)
140 1yd7_A 2-keto acid:ferredoxin 25.6 81 0.0028 33.7 5.9 49 192-248 76-124 (395)
141 2jgd_A 2-oxoglutarate dehydrog 25.0 1.4E+02 0.0047 35.9 8.2 109 444-556 318-452 (933)
142 3ibs_A Conserved hypothetical 24.2 85 0.0029 29.7 5.3 56 191-246 92-148 (218)
143 1fov_A Glutaredoxin 3, GRX3; a 23.9 1.9E+02 0.0064 22.2 6.6 69 589-660 3-72 (82)
144 3h8q_A Thioredoxin reductase 3 23.8 2.2E+02 0.0075 24.1 7.5 65 587-654 17-86 (114)
145 3lp6_A Phosphoribosylaminoimid 22.1 2E+02 0.007 27.1 7.1 34 588-621 9-45 (174)
146 2khp_A Glutaredoxin; thioredox 22.0 1.9E+02 0.0065 22.9 6.4 65 588-654 7-72 (92)
147 3ic4_A Glutaredoxin (GRX-1); s 21.7 1.3E+02 0.0043 24.1 5.2 66 588-654 13-83 (92)
148 2fvt_A Conserved hypothetical 21.4 36 0.0012 30.9 1.8 36 586-621 67-103 (135)
149 3l78_A Regulatory protein SPX; 21.3 1.5E+02 0.005 25.8 5.8 40 596-636 8-47 (120)
150 3f2v_A General stress protein 21.2 1.3E+02 0.0045 28.6 5.9 63 600-662 18-83 (192)
151 3rdw_A Putative arsenate reduc 21.0 95 0.0033 27.2 4.5 43 596-639 13-55 (121)
152 3rg8_A Phosphoribosylaminoimid 20.9 4.6E+02 0.016 24.3 9.2 69 588-659 4-79 (159)
153 2e85_A Hydrogenase 3 maturatio 20.9 2.9E+02 0.01 25.3 8.1 57 588-647 5-67 (159)
154 3fni_A Putative diflavin flavo 20.9 1.3E+02 0.0043 27.5 5.5 53 590-644 7-63 (159)
155 3fwz_A Inner membrane protein 20.6 1.9E+02 0.0064 25.4 6.5 32 587-621 8-39 (140)
156 3hr4_A Nitric oxide synthase, 20.4 1E+02 0.0035 30.2 4.9 83 588-677 41-130 (219)
157 3ors_A N5-carboxyaminoimidazol 20.4 2.8E+02 0.0095 25.9 7.6 66 588-658 5-78 (163)
158 1rtt_A Conserved hypothetical 20.2 71 0.0024 30.0 3.7 57 605-662 30-97 (193)
159 3fvw_A Putative NAD(P)H-depend 20.1 2.3E+02 0.0078 26.5 7.4 61 600-661 21-91 (192)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.2e-114 Score=1007.54 Aligned_cols=616 Identities=42% Similarity=0.689 Sum_probs=532.4
Q ss_pred CCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHH
Q 004923 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (723)
Q Consensus 71 ~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~ 150 (723)
.+.||+|++|+.|.|+|+++.++|+++++++|+.+++++++++||+++++|+++++.+||++|+.|+|+||||+||++|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999987999999999999999
Q ss_pred HHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH
Q 004923 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (723)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl 230 (723)
|++++|+.+.+.++||++|++|||++.+++++.+++|++|+++|+|+|+|+|+++++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhh
Q 004923 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (723)
Q Consensus 231 n~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (723)
|+|+.+++|++||+|||++ ++ ..+++.++.++++++.++.|..+|.+.+.+.+.+|..+.+...+..++++
T Consensus 167 ~~A~~~~~pli~IvnnN~~-~i--------~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 237 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEM-SI--------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237 (629)
T ss_dssp HHHHHHCCSEEEEEEECSB-SS--------SBCCSSHHHHC---------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCC-CC--------CCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999984 43 22345566777888888899988888877666555544444444445555
Q ss_pred cccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCcccc
Q 004923 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK 390 (723)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g~ 390 (723)
.++.|.+..+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++++|+++.+||+.++|++.++.
T Consensus 238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~ 315 (629)
T 2o1x_A 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGE 315 (629)
T ss_dssp ------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCC
T ss_pred hhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCc
Confidence 555554448999999999989999999999999999987 579999999999999999999998899999999999885
Q ss_pred cccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEe
Q 004923 391 QFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 470 (723)
Q Consensus 391 ~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~ 470 (723)
..+. +..+|+++|+++|.+++++|++++++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||++
T Consensus 316 ~~~~--~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~ 393 (629)
T 2o1x_A 316 YVPS--SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVA 393 (629)
T ss_dssp BCCC--CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEE
Confidence 4222 25689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCC
Q 004923 471 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (723)
Q Consensus 471 t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~ 550 (723)
||++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++|||+|++|+|++|+++++++|++ .++
T Consensus 394 ~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~ 472 (629)
T 2o1x_A 394 IYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDG 472 (629)
T ss_dssp EEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSS
T ss_pred ecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999999997 489
Q ss_pred CEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH
Q 004923 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (723)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~ 630 (723)
|++||++|+..+..++ ...+.+++|+++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||+++
T Consensus 473 Pv~i~~~r~~~~~~~~---~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~ 545 (629)
T 2o1x_A 473 PFAIRYPRGNTAQVPA---GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEM 545 (629)
T ss_dssp CEEEECCSSBCCCCCT---TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHH
T ss_pred CEEEEecCCCCCCCcc---cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHH
Confidence 9999999987543221 1235678999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 631 IRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 631 i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
+.+++++++.+||||++. .||||++|++++.++++ +.+++++|++|.|+++|+.+++++++|+|+++|+++|++++
T Consensus 546 i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 622 (629)
T 2o1x_A 546 LREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELG 622 (629)
T ss_dssp HHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTT
T ss_pred HHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999997 69999999999998874 57899999999999999999999999999999999999876
Q ss_pred h
Q 004923 710 G 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 623 ~ 623 (629)
T 2o1x_A 623 V 623 (629)
T ss_dssp C
T ss_pred h
Confidence 4
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-113 Score=1001.09 Aligned_cols=616 Identities=49% Similarity=0.796 Sum_probs=506.3
Q ss_pred CCCCCCCcCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHH
Q 004923 70 QRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTY 149 (723)
Q Consensus 70 ~~~~~~~l~~i~~~~~~k~~~~~~l~~la~~iR~~i~~~v~~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y 149 (723)
+.|.+|+|++|++|.|+|+++.++|++++++||+.+++++++++||+++++|++|++++||++|+.|+|+||||+||++|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHH
Q 004923 150 PHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA 229 (723)
Q Consensus 150 ~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EA 229 (723)
+|++++|+.+++.++||++|++|||++.+++++.+++|++|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh
Q 004923 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (723)
Q Consensus 230 ln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (723)
||+|+++++|+++|+|||++ ++ ..+++.+...+++++.++.|..+|...+.+.+..+ .+.++..+..+++
T Consensus 164 L~~A~~~~~pli~vvnnN~~-~i--------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p-~~~~~~~r~~~~~ 233 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEM-SI--------SENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHI 233 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCc-cc--------CCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccc-hHHHHHHHHHHHh
Confidence 99999999999999999984 43 22344455667777888888877766554432110 0022344444555
Q ss_pred hcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcccccCccc
Q 004923 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATG 389 (723)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~~g 389 (723)
+++..+ ..+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++++|+++.+||+.++|++.++
T Consensus 234 ~~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~ 309 (621)
T 2o1s_A 234 KGMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSG 309 (621)
T ss_dssp -----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC------------------
T ss_pred hhccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcC
Confidence 554332 57899999999989999999999999999987 57999999999999999999999889999999999888
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEE
Q 004923 390 KQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFC 469 (723)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~ 469 (723)
.+.+.+....+|+++|+++|.+++++|++++++++|+++++++..|+++||+||+|+||+|++|+++|+|+|++|+|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~ 389 (621)
T 2o1s_A 310 CLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIV 389 (621)
T ss_dssp --------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEE
Confidence 63222233468999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCC
Q 004923 470 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 549 (723)
Q Consensus 470 ~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~ 549 (723)
+||++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++..+
T Consensus 390 ~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 469 (621)
T 2o1s_A 390 AIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYND 469 (621)
T ss_dssp EEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCS
T ss_pred EehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999998558
Q ss_pred CCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHH
Q 004923 550 RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA 629 (723)
Q Consensus 550 ~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~ 629 (723)
+|++||++|+..+..+.|+ . +.+++|+++++++|+|++||++|++++.|++| ++||+++|||++|++|||++
T Consensus 470 ~Pv~i~~~r~~~~~~~~~~--~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 470 GPSAVRYPRGNAVGVELTP--L-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SCEEEECCSSBCCCCCCCC--C-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCEEEEeCCCCCCCCCCCc--c-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 9999999998754433332 2 56789999999999999999999999999999 45999999999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004923 630 LIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 708 (723)
Q Consensus 630 ~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~l 708 (723)
++.+++++++.+|+||++. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|+|+++|+++|+++
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~ 618 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAW 618 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999997 69999999999998874 5789999999999999999999999999999999999987
Q ss_pred Hh
Q 004923 709 LG 710 (723)
Q Consensus 709 l~ 710 (723)
+.
T Consensus 619 l~ 620 (621)
T 2o1s_A 619 LA 620 (621)
T ss_dssp HC
T ss_pred hc
Confidence 63
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=2.3e-101 Score=894.08 Aligned_cols=552 Identities=25% Similarity=0.390 Sum_probs=479.1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh-c----cCCC----CcEEEeCCCchH---HH
Q 004923 84 IHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-V----FNAP----KDRILWDVGHQT---YP 150 (723)
Q Consensus 84 ~~~k~~~~~~l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~-~----~~~p----~D~~i~s~GH~~---y~ 150 (723)
..+.+.++++|+++|++||.++++++++ ++||+|++||++||+++||+ + +++| +||||||+||++ |+
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~ 82 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYA 82 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHH
Confidence 4566778899999999999999999985 66999999999999999984 3 3233 899999999999 89
Q ss_pred HHHHcCC--hhHhHHHHhcC-CCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC-CCeEEEEEcCCcccccch
Q 004923 151 HKILTGR--RDKMHTMRQTD-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVIGDGAMTAGQA 226 (723)
Q Consensus 151 ~~~l~G~--~~~l~~~r~~~-gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~-~~~vv~viGDGa~~~G~~ 226 (723)
+++++|+ +++|.+|||+| +++|||++.++.++ +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++
T Consensus 83 ~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~ 161 (616)
T 3mos_A 83 VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSV 161 (616)
T ss_dssp HHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHH
T ss_pred HHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcH
Confidence 9999996 68899999998 69999998765554 7999999999999999999987665 599999999999999999
Q ss_pred HHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 227 YEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 227 ~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
|||+|+|+.+++ |+++|+|||++ ++.+.+ ... . ...++.+
T Consensus 162 ~Eal~~A~~~~l~~livi~nnN~~-~i~~~~-----~~~--~-----------------------------~~~~~~~-- 202 (616)
T 3mos_A 162 WEAMAFASIYKLDNLVAILDINRL-GQSDPA-----PLQ--H-----------------------------QMDIYQK-- 202 (616)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSB-CSSSBC-----TTT--T-----------------------------CHHHHHH--
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC-CCcCCc-----ccc--c-----------------------------ChHHHHH--
Confidence 999999999995 58899999983 432211 100 0 0123333
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCccc--
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK-- 383 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~~-- 383 (723)
+|++|||+++ +|||||+++|.++++++ .++|++||++|.||+|++.+| ++.+|||.++
T Consensus 203 --------------~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e-~~~~~Hg~~~~~ 262 (616)
T 3mos_A 203 --------------RCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE-DKESWHGKPLPK 262 (616)
T ss_dssp --------------HHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT-TCSSCTTCCCCH
T ss_pred --------------HHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc-CchhhcCCCCCH
Confidence 3999999988 88999999999999754 379999999999999998766 5679999763
Q ss_pred ---------cc--CcccccccC------------------------cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCC
Q 004923 384 ---------FD--PATGKQFKS------------------------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGG 428 (723)
Q Consensus 384 ---------fd--~~~g~~~~~------------------------~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~g 428 (723)
++ .++++...+ .....+++++|+++|.+++++||+++++++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~ 342 (616)
T 3mos_A 263 NMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKN 342 (616)
T ss_dssp HHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHH
T ss_pred HHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCC
Confidence 11 022211100 0112357799999999999999999999999998
Q ss_pred CcChhhhhhhCCCceeeccccHHHHHHHHHHHHhcCC-eeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCC
Q 004923 429 GTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGA 506 (723)
Q Consensus 429 s~~l~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~G~-~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~ 506 (723)
++.+..|+++||+||||+||+|++|+++|+|+|++|+ +||+++|++|++|++|||++. +++++||+++++++|+ +|+
T Consensus 343 ~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G~ 421 (616)
T 3mos_A 343 STFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIGE 421 (616)
T ss_dssp HHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGCT
T ss_pred CcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccccC
Confidence 8889999999999999999999999999999999997 799999999999999999875 8999999999999998 899
Q ss_pred CCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeC
Q 004923 507 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG 586 (723)
Q Consensus 507 dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG 586 (723)
||+|||+.+|+++++++|||+|++|+|++|+..++++|++ .++|+++|++|+..+... . ....+++||++++++|
T Consensus 422 dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~--~--~~~~~~~Gka~vl~eg 496 (616)
T 3mos_A 422 DGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIY--N--NNEDFQVGQAKVVLKS 496 (616)
T ss_dssp TCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCS--C--TTCCCCTTCCEEEECC
T ss_pred CCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccC--C--CcccccCCeEEEEEeC
Confidence 9999999999999999999999999999999999999986 579999999997644321 1 2356789999999999
Q ss_pred Cc--EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCC-CEEEEEcCCC-CCChHHHHHHHHHH
Q 004923 587 ER--VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEGS-IGGFGSHVVQFLAQ 662 (723)
Q Consensus 587 ~d--v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~-~~vvvvEe~~-~gG~g~~v~~~l~~ 662 (723)
.| ++||++|++++.|++|+++|+++||+++|||++|++|||+++|.++++++ +.|||+||+. .||+|++|++++.+
T Consensus 497 ~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~ 576 (616)
T 3mos_A 497 KDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVG 576 (616)
T ss_dssp SSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTT
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHh
Confidence 76 99999999999999999999999999999999999999999999999988 8999999996 79999999999988
Q ss_pred cCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004923 663 DGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVF 706 (723)
Q Consensus 663 ~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~ 706 (723)
++ +.+++++|++ .|+++|+++++++++|||+++|+++|+
T Consensus 577 ~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 577 EP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp CT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred cC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 65 4689999999 599999999999999999999999885
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=8.4e-101 Score=887.42 Aligned_cols=536 Identities=22% Similarity=0.324 Sum_probs=460.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhhccC-C-------CCcEEEeCCCchH---HHHHHHcC
Q 004923 89 LSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-A-------PKDRILWDVGHQT---YPHKILTG 156 (723)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~~~~-~-------p~D~~i~s~GH~~---y~~~~l~G 156 (723)
|+.++|+++|++||+++++++++ ++||+|++||++|++++||++|+ + +|||||||+||++ |+|++|+|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 56789999999999999999985 89999999999999999988775 2 4899999999999 99999999
Q ss_pred Ch---hHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC-------CCeEEEEEcCCcccccc
Q 004923 157 RR---DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-------KNNVVAVIGDGAMTAGQ 225 (723)
Q Consensus 157 ~~---~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~-------~~~vv~viGDGa~~~G~ 225 (723)
++ ++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|||+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 94 889999999995 699999 8999999999999999999999999998764 89999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHH
Q 004923 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (723)
Q Consensus 226 ~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 304 (723)
+|||+++|+++++ |+++|+|||++ ++.+.. +..
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~-~i~~~~--------~~~------------------------------------- 193 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNI-SIEGDV--------GLA------------------------------------- 193 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTEEG--------GGT-------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCc-ccccch--------hhh-------------------------------------
Confidence 9999999999995 59999999984 432111 000
Q ss_pred HHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc--
Q 004923 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-- 382 (723)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~-- 382 (723)
...+...+|++|||+++ +|||||+++|.++++++++ .++|++||++|+||+|++++|+ +.+|||.+
T Consensus 194 --------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l~ 261 (632)
T 3l84_A 194 --------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG-SHKSHGAPLG 261 (632)
T ss_dssp --------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT-CGGGSSSCCC
T ss_pred --------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC-cccccCCCCC
Confidence 01122334999999999 8999999999999999987 6899999999999999998775 47899987
Q ss_pred -----------------cccCccc------------cccc--------C-----------------------cchhhHHH
Q 004923 383 -----------------KFDPATG------------KQFK--------S-----------------------SARTQSYT 402 (723)
Q Consensus 383 -----------------~fd~~~g------------~~~~--------~-----------------------~~~~~~~~ 402 (723)
+|++.++ ++.. . .......+
T Consensus 262 ~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r 341 (632)
T 3l84_A 262 EEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATR 341 (632)
T ss_dssp HHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHH
T ss_pred HHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHH
Confidence 4554221 1000 0 00123567
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCcChh-hhhhhC-CCceeeccccHHHHHHHHHHHHhc-CCeeEEeehhHHHHHH
Q 004923 403 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-LFLRRF-PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRA 479 (723)
Q Consensus 403 ~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~-~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~-G~~p~~~t~s~Fl~ra 479 (723)
++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||++ |++||++||++|++|+
T Consensus 342 ~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~ 421 (632)
T 3l84_A 342 DSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYL 421 (632)
T ss_dssp HHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHH
Confidence 7888999999999999999999998766543 223678 999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecC
Q 004923 480 YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558 (723)
Q Consensus 480 ~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r 558 (723)
++|| ++++++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++++|++ +++|++||++|
T Consensus 422 ~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r 499 (632)
T 3l84_A 422 KPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSR 499 (632)
T ss_dssp HHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred HHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcC
Confidence 9998 5789999999999977776 8999999999999999999999999999999999999999998 78999999999
Q ss_pred CCCccccCCCCCCCCCcccCce-EEeee--CCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH--HHH
Q 004923 559 GNGIGVELPPGNKGIPLEVGKG-RILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL--IRS 633 (723)
Q Consensus 559 ~~~~~~~~p~~~~~~~~~~gk~-~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~--i~~ 633 (723)
+.. ++.. ..+..+++++ +++++ |+||+||++|++++.|++|+++|+++||+++|||++|++|||++. +.+
T Consensus 500 ~~~----~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~ 574 (632)
T 3l84_A 500 QKL----KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQE 574 (632)
T ss_dssp SCB----CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHH
T ss_pred CCC----CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHH
Confidence 874 2321 1234567776 89999 899999999999999999999999999999999999999999974 444
Q ss_pred HhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004923 634 LAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 707 (723)
Q Consensus 634 ~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ 707 (723)
.+.+ +.||+||++...||++.+ . +++|+ |+|+++|+.+++++++|||+++|+++|++
T Consensus 575 sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 575 RLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred HhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 4444 679999999888886321 1 67898 99999999999999999999999998863
No 5
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.2e-100 Score=887.38 Aligned_cols=545 Identities=20% Similarity=0.273 Sum_probs=468.7
Q ss_pred HHHHHHHH-HHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh-ccC-C-------CCcEEEeCCCchH---HHHHHHcC
Q 004923 91 IRELKQLA-DELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-VFN-A-------PKDRILWDVGHQT---YPHKILTG 156 (723)
Q Consensus 91 ~~~l~~la-~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~-~~~-~-------p~D~~i~s~GH~~---y~~~~l~G 156 (723)
.++|+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ + +|||||||+||++ |++++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 46799999 8999999999985 68999999999999999996 775 3 3899999999999 99999999
Q ss_pred C---hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhc-------------CCCCeEEEEEcCC
Q 004923 157 R---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-------------GRKNNVVAVIGDG 219 (723)
Q Consensus 157 ~---~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~-------------g~~~~vv~viGDG 219 (723)
+ .++|++|||.|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 799999999998 6999999889999999999999999999999999985 5689999999999
Q ss_pred cccccchHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCch
Q 004923 220 AMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPM 298 (723)
Q Consensus 220 a~~~G~~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~ 298 (723)
++++|++|||+|+|+++++ |||+|+|||++ ++.+.+... . .
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~-si~~~~~~~-------~------------------------------~ 220 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQI-SIEDDTNIA-------L------------------------------C 220 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGT-------C------------------------------C
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCc-ccccchhhc-------c------------------------------c
Confidence 9999999999999999997 59999999994 542211100 0 1
Q ss_pred HHHHHHHHHHhhcccCCCccchhhccCCeEEEec-CCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccc
Q 004923 299 HELAAKVDEYARGMISGSGSTLFEELGLYYIGPV-DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADK 377 (723)
Q Consensus 299 ~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~v-DGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~ 377 (723)
+++.++ |++|||+++ .| ||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+
T Consensus 221 ~~~~~~----------------~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~-~~ 281 (700)
T 3rim_A 221 EDTAAR----------------YRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDT-GK 281 (700)
T ss_dssp CCHHHH----------------HHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-HH
T ss_pred hhHHHH----------------HHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCC-cc
Confidence 233434 999999999 56 999999999999999863 57999999999999999999865 67
Q ss_pred cCCccc-------------------ccCcc------------ccc------------------------------ccC--
Q 004923 378 YHGVAK-------------------FDPAT------------GKQ------------------------------FKS-- 394 (723)
Q Consensus 378 ~H~~~~-------------------fd~~~------------g~~------------------------------~~~-- 394 (723)
|||.++ |++.+ |++ ++.
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 999764 43211 110 000
Q ss_pred ---------cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcC-----hhhhhhhC------C----CceeeccccH
Q 004923 395 ---------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRF------P----TRCFDVGIAE 450 (723)
Q Consensus 395 ---------~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~~------p----~R~id~GIaE 450 (723)
..+..+++++++++|.+++++||+++++++|++++++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0123467899999999999999999999999987765 46799998 8 5999999999
Q ss_pred HHHHHHHHHHHhc-CCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEE
Q 004923 451 QHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVV 528 (723)
Q Consensus 451 ~~~v~~AaGlA~~-G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V 528 (723)
|+|+++|+|||++ |++||++||+.|+.++++|| ++++++++||++++++.|+ +|+||+|||+++|+++||++|||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998888886 5799999999999988776 8999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHHHhCC--CCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCC--------cEEEEEecchH
Q 004923 529 MAPSDEAELFHMVATAAAIDD--RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE--------RVALLGYGTAV 598 (723)
Q Consensus 529 ~~Psd~~E~~~~l~~A~~~~~--~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~--------dv~Iva~Gs~v 598 (723)
++|+|++|++.++++|++..+ +|++||++|+.++. ++.. ..+.+++|+ +++++|+ ||+||++|+++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v 596 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEV 596 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCCCCCEEEEEechHH
Confidence 999999999999999998666 79999999987543 2221 124567887 7999986 99999999999
Q ss_pred HHHHHHHHHHHhCCCceEEeecCccccccH---HHHHHHhcC-CCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEE
Q 004923 599 QSCLAASALLESNGLRLTVADARFCKPLDH---ALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRP 674 (723)
Q Consensus 599 ~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~---~~i~~~~~~-~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~ 674 (723)
+.|++|+++|+++||+++|||+||++|||. +++.+++++ ++.+|+||++...||. +++.+++ ++
T Consensus 597 ~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~~ 664 (700)
T 3rim_A 597 QLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------EI 664 (700)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------EE
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------cE
Confidence 999999999999999999999999999999 566667775 7889999999877774 4444332 57
Q ss_pred eecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 675 LVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 675 ~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
+|+ |+|+.||+++++++++|||+++|+++|+++++
T Consensus 665 igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 665 VSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp ECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred Ecc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 888 99999999999999999999999999998874
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=9.5e-100 Score=885.36 Aligned_cols=553 Identities=21% Similarity=0.308 Sum_probs=458.3
Q ss_pred cccCCHHHHHHHH-HHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh-ccC--------CCCcEEEeCCCchH---HHH
Q 004923 86 MKNLSIRELKQLA-DELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-VFN--------APKDRILWDVGHQT---YPH 151 (723)
Q Consensus 86 ~k~~~~~~l~~la-~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~-~~~--------~p~D~~i~s~GH~~---y~~ 151 (723)
++|+..++|+++| ++||.++++|+++ ++||+|++||++||+++||+ +|+ .+|||||||+||++ |++
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 4566667799999 8999999999985 89999999999999999995 654 14899999999999 999
Q ss_pred HHHcCC---hhHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEc
Q 004923 152 KILTGR---RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIG 217 (723)
Q Consensus 152 ~~l~G~---~~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viG 217 (723)
++|+|+ .++|++|||+|++ +|||++.+++++.+++|++|+++|+|+|||+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 7999999999995 59999989999999999999999999999999998763 899999999
Q ss_pred CCcccccchHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCC
Q 004923 218 DGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGG 296 (723)
Q Consensus 218 DGa~~~G~~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~ 296 (723)
||++++|++|||+++|+++++ |+|+|+|||++ ++.+..... .
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~-~i~~~~~~~-------~----------------------------- 223 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI-SLDGDLNRS-------F----------------------------- 223 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB-CSSSBGGGT-------C-----------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCe-ecccchhhc-------c-----------------------------
Confidence 999999999999999999995 69999999984 442211100 0
Q ss_pred chHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhccc
Q 004923 297 PMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAAD 376 (723)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~ 376 (723)
..++. .+|++|||+++.++||||+++|.++++++++. .++|++||++|+||+|++++| ++.
T Consensus 224 -~~d~~----------------~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~-~~~ 284 (690)
T 3m49_A 224 -SESVE----------------DRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKS-GKS 284 (690)
T ss_dssp -CCCHH----------------HHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT-TSG
T ss_pred -chhHH----------------HHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCccc-Ccc
Confidence 01223 34999999999767999999999999999862 479999999999999998755 457
Q ss_pred ccCCcc-------------------cccCccccc------ccC-------------------------------------
Q 004923 377 KYHGVA-------------------KFDPATGKQ------FKS------------------------------------- 394 (723)
Q Consensus 377 ~~H~~~-------------------~fd~~~g~~------~~~------------------------------------- 394 (723)
+|||.+ +|++.++.. ...
T Consensus 285 ~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~ 364 (690)
T 3m49_A 285 ASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPE 364 (690)
T ss_dssp GGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCT
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCch
Confidence 899986 465443310 000
Q ss_pred ----------cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhhh-CCCceeeccccHHHHHHHHH
Q 004923 395 ----------SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR-FPTRCFDVGIAEQHAVTFAA 458 (723)
Q Consensus 395 ----------~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~-~p~R~id~GIaE~~~v~~Aa 458 (723)
..+...++++++++|.++++++|+++++++|++++++. .+|+++ +|+||||+||+||+|+++|+
T Consensus 365 ~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~ 444 (690)
T 3m49_A 365 GWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMN 444 (690)
T ss_dssp TGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHH
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHH
Confidence 00112567889999999999999999999999877654 467765 58999999999999999999
Q ss_pred HHHhc-CCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHH
Q 004923 459 GLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 536 (723)
Q Consensus 459 GlA~~-G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E 536 (723)
|||++ |+|||++||+.|..++..|| ++++++++||+++++++|+ +|+||+|||+++|+++||++|||+|++|+|++|
T Consensus 445 GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E 523 (690)
T 3m49_A 445 GIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNE 523 (690)
T ss_dssp HHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred HHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 99999 89999998755554444454 5789999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCCcccCceEEeeeCC----cEEEEEecchHHHHHHHHHHHHhCC
Q 004923 537 LFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE----RVALLGYGTAVQSCLAASALLESNG 612 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~----dv~Iva~Gs~v~~al~Aa~~L~~~G 612 (723)
++.+|++|++..++|++||++|+..+..........+.++.|+ +++++|+ ||+||++|++++.|++|+++|+++|
T Consensus 524 ~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~G 602 (690)
T 3m49_A 524 SVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVDG 602 (690)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhcC
Confidence 9999999998668999999999875422100000013456676 7899985 9999999999999999999999999
Q ss_pred CceEEeecCccccccH---HHHHHHh-cCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHH
Q 004923 613 LRLTVADARFCKPLDH---ALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPA 688 (723)
Q Consensus 613 i~v~VId~~~ikP~d~---~~i~~~~-~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~ 688 (723)
|+++|||+||++|||. +++.+++ ++++.+|+||++...||. +++...+ ..+|+ |+|+.+|+.+
T Consensus 603 I~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~~~ 669 (690)
T 3m49_A 603 VDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAPGE 669 (690)
T ss_dssp CCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSCHH
T ss_pred CCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCCHH
Confidence 9999999999999985 4556666 467889999999877775 4444332 35777 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 004923 689 DQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 689 el~~~~gl~~e~I~~~i~~ll 709 (723)
++++++|||+++|+++|++++
T Consensus 670 ~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 670 KIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHHHhC
Confidence 999999999999999998764
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.5e-98 Score=870.75 Aligned_cols=546 Identities=20% Similarity=0.288 Sum_probs=457.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHcCC
Q 004923 91 IRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGR 157 (723)
Q Consensus 91 ~~~l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G~ 157 (723)
+..++++|++||+++++|+++ ++||+|++||++||+++||+ .||. +|||||||+||++ |++++|+|+
T Consensus 3 ~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 82 (663)
T 3kom_A 3 LSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGY 82 (663)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCC
Confidence 344678999999999999985 89999999999999999964 4543 5899999999999 999999999
Q ss_pred h---hHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcccc
Q 004923 158 R---DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTA 223 (723)
Q Consensus 158 ~---~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~~~ 223 (723)
+ ++|++|||.|++ +|||++..++++.+++|++|+++|+|+|||+|.++++. +++|||++|||++++
T Consensus 83 ~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~e 162 (663)
T 3kom_A 83 DLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLME 162 (663)
T ss_dssp SCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHS
T ss_pred CCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhh
Confidence 3 889999999985 79999888899999999999999999999999998764 799999999999999
Q ss_pred cchHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHH
Q 004923 224 GQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA 302 (723)
Q Consensus 224 G~~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~ 302 (723)
|++|||+++|+++++ |+|+|+|||++ ++.+ ++ +..
T Consensus 163 G~~~Eal~~A~~~~L~~livi~dnN~~-~i~~-----~~---~~~----------------------------------- 198 (663)
T 3kom_A 163 GVSHEACSLAGTLGLNKLVAFWDDNNI-SIDG-----DT---KGW----------------------------------- 198 (663)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEECC-----------CG---GGT-----------------------------------
T ss_pred chHHHHHHHHHHhCCCeEEEEEECCCc-cccc-----ch---hhh-----------------------------------
Confidence 999999999999996 59999999984 4421 11 100
Q ss_pred HHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc
Q 004923 303 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (723)
Q Consensus 303 ~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~ 382 (723)
...+...+|++|||+++++|||||+++|.++++++++. .++|++||++|+||+|++++|+. .+|||.+
T Consensus 199 ----------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~-~~~Hg~~ 266 (663)
T 3kom_A 199 ----------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGT-ASVHGSP 266 (663)
T ss_dssp ----------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTC-SSTTSSC
T ss_pred ----------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCC-ccccCCC
Confidence 01222344999999999899999999999999999863 47999999999999999988754 6899974
Q ss_pred ------------------cccCccc-----------cc----------------------------ccC-----------
Q 004923 383 ------------------KFDPATG-----------KQ----------------------------FKS----------- 394 (723)
Q Consensus 383 ------------------~fd~~~g-----------~~----------------------------~~~----------- 394 (723)
+|+..++ +. .+.
T Consensus 267 l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T 3kom_A 267 LSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIA 346 (663)
T ss_dssp CCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhh
Confidence 3553322 00 000
Q ss_pred ----cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhh-hhCCCceeeccccHHHHHHHHHHHHhc-
Q 004923 395 ----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIAEQHAVTFAAGLACE- 463 (723)
Q Consensus 395 ----~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~-~~~p~R~id~GIaE~~~v~~AaGlA~~- 463 (723)
+.+..+++++++++|.++++++|+++++++|++++++. ..|+ ++||+||||+||+||+|+++|+|+|++
T Consensus 347 ~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~g 426 (663)
T 3kom_A 347 SQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYG 426 (663)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHS
T ss_pred hhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcC
Confidence 01123567888999999999999999999999877654 3574 999999999999999999999999999
Q ss_pred CCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 464 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 464 G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
|+|||++||++|++++++|| ++++++++||++++++.|+ +|+||+|||+++|++++|++|||+|++|+|++|++.+++
T Consensus 427 G~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~ 505 (663)
T 3kom_A 427 GIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWK 505 (663)
T ss_dssp SCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred CCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 99999999999999999997 5689999999999977766 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCCCccccCCCCCC-CCCcccCceEEeee--CCcEEEEEecchHHHHHHHHHHHHhCCCceEEee
Q 004923 543 TAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVAD 619 (723)
Q Consensus 543 ~A~~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~e--G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId 619 (723)
+|++.+++|++||++|++.+.. +.... ...++.| .+++++ |+||+||++|++++.|++|+++|+++||+++|||
T Consensus 506 ~A~~~~~~Pv~ir~~r~~~p~~--~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~ 582 (663)
T 3kom_A 506 EAVKSKDTPSVMVLTRQNLMPV--VQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVAS 582 (663)
T ss_dssp HHHHCSSCCEEEECCSSEECCC--CCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHhCCCCEEEEccCccCCCc--CccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9998678999999999864321 11000 0123445 478888 7899999999999999999999999999999999
Q ss_pred cCccccccHHH---HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC
Q 004923 620 ARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 696 (723)
Q Consensus 620 ~~~ikP~d~~~---i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl 696 (723)
++|++|||.+. ++++++....+|++|++...||.+.+. | ..-+.+|+ |+|+.+|+.++++++|||
T Consensus 583 ~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~g------G-----~~~~~igi-d~Fg~sg~~~~l~~~~Gl 650 (663)
T 3kom_A 583 IPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYMP------K-----AGGEVKGI-YSFGESAPAEDLFKRFGF 650 (663)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGCC------T-----TCEEEECC-CSCCCSSCHHHHHHHHTC
T ss_pred cCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHhc------c-----cCCcEEEe-cCCcCCCCHHHHHHHHCc
Confidence 99999999986 455666667899999998888875431 1 22367888 999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 004923 697 TPSHIAATVFNI 708 (723)
Q Consensus 697 ~~e~I~~~i~~l 708 (723)
|+++|+++++++
T Consensus 651 t~e~I~~~~~~~ 662 (663)
T 3kom_A 651 TVENISNIVAKY 662 (663)
T ss_dssp SHHHHHHHHTTT
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.9e-97 Score=870.24 Aligned_cols=550 Identities=23% Similarity=0.317 Sum_probs=471.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccC------CCCcEEEeCCCchH---H
Q 004923 83 PIHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN------APKDRILWDVGHQT---Y 149 (723)
Q Consensus 83 ~~~~k~~~~~~l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~------~p~D~~i~s~GH~~---y 149 (723)
|.+.|+|+.++|+++|++||+++++|+++ ++||+|++||++||+++||+ .|+ .++||||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 55789999999999999999999999986 89999999999999999994 554 25899999999999 9
Q ss_pred HHHHHcCCh----hHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEE
Q 004923 150 PHKILTGRR----DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVA 214 (723)
Q Consensus 150 ~~~~l~G~~----~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~ 214 (723)
+|++|+|+. ++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999995 889999999996 8999998899999999999999999999999999876 6899999
Q ss_pred EEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccc
Q 004923 215 VIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQ 293 (723)
Q Consensus 215 viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~ 293 (723)
++|||++++|++|||+++|+.++ .|+++|+|||++ ++.+.+. ..
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~--------~~-------------------------- 209 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI-SIDGDTE--------IA-------------------------- 209 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGG--------GT--------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc-cCCCChh--------hh--------------------------
Confidence 99999999999999999999999 589999999984 4321110 00
Q ss_pred cCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhh
Q 004923 294 IGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 294 ~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGh-d~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e 372 (723)
+..+...+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++++|
T Consensus 210 -------------------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~ 269 (675)
T 1itz_A 210 -------------------FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA 269 (675)
T ss_dssp -------------------CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT
T ss_pred -------------------cChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc
Confidence 01122334999999998899999 999999999999863 479999999999999999886
Q ss_pred hcccccCCcc------------------cccCccccc--------------------cc---------------------
Q 004923 373 KAADKYHGVA------------------KFDPATGKQ--------------------FK--------------------- 393 (723)
Q Consensus 373 ~~~~~~H~~~------------------~fd~~~g~~--------------------~~--------------------- 393 (723)
+ +.+|||.+ +|+..++.. +.
T Consensus 270 ~-~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (675)
T 1itz_A 270 N-SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGEL 348 (675)
T ss_dssp T-SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCC
T ss_pred C-cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccC
Confidence 4 47899983 465432200 00
Q ss_pred ------------CcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhh-hCCCceeeccccHHHHHH
Q 004923 394 ------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVT 455 (723)
Q Consensus 394 ------------~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~-~~p~R~id~GIaE~~~v~ 455 (723)
...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|++
T Consensus 349 p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~ 428 (675)
T 1itz_A 349 PTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGA 428 (675)
T ss_dssp CTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHH
T ss_pred CchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHH
Confidence 011234678889999999999999999999999877654 34887 999999999999999999
Q ss_pred HHHHHHhcC--CeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccC
Q 004923 456 FAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPS 532 (723)
Q Consensus 456 ~AaGlA~~G--~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps 532 (723)
+|+|+|++| ++||++||++|+.++++|| ++++++++||++++++.|+ +|+||+|||+++|++++|++||++|++|+
T Consensus 429 ~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pa 507 (675)
T 1itz_A 429 ICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 507 (675)
T ss_dssp HHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC
T ss_pred HHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECC
Confidence 999999999 9999999999999999997 4689999999999977766 79999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCC-CcccCceEEeee---C--CcEEEEEecchHHHHHHHHH
Q 004923 533 DEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIE---G--ERVALLGYGTAVQSCLAASA 606 (723)
Q Consensus 533 d~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~~gk~~vl~e---G--~dv~Iva~Gs~v~~al~Aa~ 606 (723)
|++|+..++++|++..++|++||++|+..+.. +. ..+ .+++| ++++++ | +||+||++|++++.|++|++
T Consensus 508 d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~--~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~ 582 (675)
T 1itz_A 508 DGNETAGAYKVAVLNRKRPSILALSRQKLPHL--PG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAAD 582 (675)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEECSSCBCCC--TT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEecCCCCCCC--CC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHH
Confidence 99999999999998558999999999875432 22 122 46678 688988 8 89999999999999999999
Q ss_pred HHHhCCCceEEeecCccccccHHH---HHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccc
Q 004923 607 LLESNGLRLTVADARFCKPLDHAL---IRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYI 682 (723)
Q Consensus 607 ~L~~~Gi~v~VId~~~ikP~d~~~---i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~ 682 (723)
+|+++||+++|||++|++|||.+. +.++++++ +++|++|++..+||++. +. .+.+++|+ |.|+
T Consensus 583 ~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~----~~--------~~~~~ig~-d~fg 649 (675)
T 1itz_A 583 ELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKY----VG--------AQGKAIGI-DKFG 649 (675)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHH----HC--------SSCEEECC-CSCC
T ss_pred HHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHh----cC--------CCceEEEe-CCCC
Confidence 999999999999999999999884 77777775 78999999988899863 21 23468898 9999
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHH
Q 004923 683 DHGSPADQLAQAGLTPSHIAATVFN 707 (723)
Q Consensus 683 ~~g~~~el~~~~gl~~e~I~~~i~~ 707 (723)
.+|+.+++++++|+|+++|+++|++
T Consensus 650 ~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 650 ASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 9999999999999999999999864
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=6.4e-98 Score=871.45 Aligned_cols=541 Identities=23% Similarity=0.319 Sum_probs=442.0
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHcCCh--
Q 004923 94 LKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGRR-- 158 (723)
Q Consensus 94 l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G~~-- 158 (723)
.+++|++||+++++++++ ++||+|++||++||+++||. .||. +|||||||+||++ |++++|+|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 466999999999999985 89999999999999999964 4542 4899999999999 9999999994
Q ss_pred -hHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCC----------CCeEEEEEcCCcccccch
Q 004923 159 -DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQA 226 (723)
Q Consensus 159 -~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~----------~~~vv~viGDGa~~~G~~ 226 (723)
++|++|||.|++ +|||+....++..+++|++|+++|+|+|||+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 899999999984 79998877788889999999999999999999998764 789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 227 YEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 227 ~EAln~A~~~~~n-li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
|||+++|+++++| +|+|+|||++ ++.+.. +..
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~-~i~~~~--------~~~-------------------------------------- 237 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGI-SIDGDV--------VNW-------------------------------------- 237 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEG--------GGT--------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEEECCCc-ccccch--------hhh--------------------------------------
Confidence 9999999999965 9999999984 432111 000
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc---
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--- 382 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~--- 382 (723)
...+...+|++|||+++.+|||||+++|.++++++++ .++|++|+++|+||+|++++| ++.+|||.+
T Consensus 238 -------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~~ 307 (711)
T 3uk1_A 238 -------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA-GGHDVHGAPLGA 307 (711)
T ss_dssp -------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------CH
T ss_pred -------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC-CcccccCCCCCH
Confidence 0122234499999999977999999999999999987 589999999999999998766 457899975
Q ss_pred ---------------cccCcc-----------cccc------------------------------cC------------
Q 004923 383 ---------------KFDPAT-----------GKQF------------------------------KS------------ 394 (723)
Q Consensus 383 ---------------~fd~~~-----------g~~~------------------------------~~------------ 394 (723)
+|+..+ |+.. +.
T Consensus 308 e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 387 (711)
T 3uk1_A 308 DEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAG 387 (711)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhh
Confidence 455432 2100 00
Q ss_pred ---cchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhhh---CC---CceeeccccHHHHHHHHHHH
Q 004923 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR---FP---TRCFDVGIAEQHAVTFAAGL 460 (723)
Q Consensus 395 ---~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~---~p---~R~id~GIaE~~~v~~AaGl 460 (723)
..+..+++++++++|.++++++|+++++++|+++++++ ..|+++ || +||||+||+||+|+++|+|+
T Consensus 388 ~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGl 467 (711)
T 3uk1_A 388 ANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGL 467 (711)
T ss_dssp HHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHH
Confidence 00112456788889999999999999999999876554 478888 99 99999999999999999999
Q ss_pred Hhc-CCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHH
Q 004923 461 ACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELF 538 (723)
Q Consensus 461 A~~-G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~ 538 (723)
|++ |++||++||++|++|+++||. +++++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++
T Consensus 468 A~~~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~ 546 (711)
T 3uk1_A 468 VLHGGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETA 546 (711)
T ss_dssp HHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HHcCCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHH
Confidence 995 999999999999999999975 689999999999988776 79999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEecCCCCccccCCCCCC-CCCcccCceEEeee--C----CcEEEEEecchHHHHHHHHHHHHhC
Q 004923 539 HMVATAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--G----ERVALLGYGTAVQSCLAASALLESN 611 (723)
Q Consensus 539 ~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~e--G----~dv~Iva~Gs~v~~al~Aa~~L~~~ 611 (723)
.++++|++ .++|++||++|++++. ++.... .+.++.|+ +++++ | +||+||++|++++.|++|+++|+++
T Consensus 547 ~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~ 622 (711)
T 3uk1_A 547 VAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQ 622 (711)
T ss_dssp HHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHc
Confidence 99999998 7899999999986542 111000 03455666 57775 7 7999999999999999999999999
Q ss_pred CCceEEeecCccccccHHH---HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHH
Q 004923 612 GLRLTVADARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPA 688 (723)
Q Consensus 612 Gi~v~VId~~~ikP~d~~~---i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~ 688 (723)
||+++|||++|++|||.+. +.++++....+|++|++..+||++.+ . .+.+++|+ |+|+.+|+.+
T Consensus 623 GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g--------~~~~~iGi-d~Fg~sg~~~ 689 (711)
T 3uk1_A 623 GIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----G--------LEGGVVGI-DTFGESAPAG 689 (711)
T ss_dssp TEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----T--------TTSEEECC-CSCCCSSCHH
T ss_pred CCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----C--------CCceEEEe-CCCcCcCCHH
Confidence 9999999999999999885 34455555579999999888897544 2 12357888 9999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 004923 689 DQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 689 el~~~~gl~~e~I~~~i~~ll 709 (723)
+++++||||+++|++++++++
T Consensus 690 ~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 690 VLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999876
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-95 Score=851.35 Aligned_cols=534 Identities=22% Similarity=0.297 Sum_probs=460.2
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccC------CCCcEEEeCCCchH---HHHHHHcCC---hh
Q 004923 96 QLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN------APKDRILWDVGHQT---YPHKILTGR---RD 159 (723)
Q Consensus 96 ~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~------~p~D~~i~s~GH~~---y~~~~l~G~---~~ 159 (723)
++|++||+++++|+++ ++||+|++||++|++++||+ .|| .+|||||||+||++ |++++|+|+ ++
T Consensus 10 ~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 89 (651)
T 2e6k_A 10 LSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPLE 89 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCHH
Confidence 4899999999999986 99999999999999999994 454 25899999999999 999999999 78
Q ss_pred HhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccchHH
Q 004923 160 KMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYE 228 (723)
Q Consensus 160 ~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~~~E 228 (723)
+|.+|||++++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++||
T Consensus 90 ~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~E 169 (651)
T 2e6k_A 90 ELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGE 169 (651)
T ss_dssp HHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHH
T ss_pred HHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHH
Confidence 99999999996 8999998899999999999999999999999999876 689999999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHH
Q 004923 229 AMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307 (723)
Q Consensus 229 Aln~A~~~~~n-li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~ 307 (723)
|+++|+.+++| +++|+|||++ ++.+.+.. .+
T Consensus 170 al~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~---------------------------------------- 201 (651)
T 2e6k_A 170 AASLAGHWGLSKLIVFWDDNRI-SIDGPTDL-------AF---------------------------------------- 201 (651)
T ss_dssp HHHHHHHTTCTTEEEEEEECCE-ETTEEGGG-------TC----------------------------------------
T ss_pred HHHHHHHcCCCeEEEEEECCCc-cccccccc-------cc----------------------------------------
Confidence 99999999955 9999999984 43211100 00
Q ss_pred HhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc-----
Q 004923 308 YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 382 (723)
Q Consensus 308 ~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~----- 382 (723)
..+...+|++|||+++++|||||+++|.++++++++ .++|++||++|.||+|++ . .++.+||+.+
T Consensus 202 ------~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~-~~~~~~H~~~~~~~e 271 (651)
T 2e6k_A 202 ------TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-K-QDSAKAHGEPLGPEA 271 (651)
T ss_dssp ------CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-T-TTSGGGTSSCCHHHH
T ss_pred ------CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-c-cccccccccCCCHHH
Confidence 112233499999999889999999999999999987 589999999999999999 4 4567899986
Q ss_pred -------------cccCccccc--ccC-----------------------------------cc-----------hhhHH
Q 004923 383 -------------KFDPATGKQ--FKS-----------------------------------SA-----------RTQSY 401 (723)
Q Consensus 383 -------------~fd~~~g~~--~~~-----------------------------------~~-----------~~~~~ 401 (723)
+|+..++.. +.. +. +..++
T Consensus 272 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (651)
T 2e6k_A 272 VEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIAT 351 (651)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCH
T ss_pred HHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHH
Confidence 565433210 000 00 13467
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhh-hCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeehhH
Q 004923 402 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSS 474 (723)
Q Consensus 402 ~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~-~~p~R~id~GIaE~~~v~~AaGlA~~G-~~p~~~t~s~ 474 (723)
+++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|+|++| ++||++||++
T Consensus 352 r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~ 431 (651)
T 2e6k_A 352 RAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLV 431 (651)
T ss_dssp HHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHH
Confidence 8889999999999999999999999877765 45887 999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEE
Q 004923 475 FMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSC 553 (723)
Q Consensus 475 Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ 553 (723)
|+.++++|| ++++++++||++++++.|+ +|+||+|||+++|++++|++|||+|++|+|++|+..++++|++..++|++
T Consensus 432 F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~ 510 (651)
T 2e6k_A 432 FSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTA 510 (651)
T ss_dssp GGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEE
Confidence 988888885 6789999999999977776 79999999999999999999999999999999999999999986589999
Q ss_pred EEecCCCCccccCCCCCCCCCcccCceEEeeeC--CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH-
Q 004923 554 FRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL- 630 (723)
Q Consensus 554 ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~- 630 (723)
||++|+..+. ++.. ....++.| ++++++| +||+||++|++++.|++|+++|+++||+++|||++|++|||.+.
T Consensus 511 i~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~ 586 (651)
T 2e6k_A 511 LVLTRQAVPL--LSPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPE 586 (651)
T ss_dssp EECCSSCBCC--CCHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCH
T ss_pred EEEeCCCCCC--CCcc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccccH
Confidence 9999987532 2210 01135566 5889988 89999999999999999999999999999999999999999984
Q ss_pred --HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004923 631 --IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 708 (723)
Q Consensus 631 --i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~l 708 (723)
+.+++++++.+|++|++..+||++++ + +++|+ |.|+++|+.+++++++|+|+++|+++|+++
T Consensus 587 ~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~~~ 650 (651)
T 2e6k_A 587 AYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFLSL 650 (651)
T ss_dssp HHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 77788887789999999889988543 2 67898 999999999999999999999999999865
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=2.3e-95 Score=852.58 Aligned_cols=545 Identities=21% Similarity=0.298 Sum_probs=462.9
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccCC------CCcEEEeCCCchH---HHHHHHcCC---
Q 004923 94 LKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGR--- 157 (723)
Q Consensus 94 l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~~------p~D~~i~s~GH~~---y~~~~l~G~--- 157 (723)
|+++|++||+++++|+++ ++||+|++||++|++++||+ .||. ++||||||+||++ |++++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 778999999999999985 89999999999999999994 3442 4899999999999 999999999
Q ss_pred hhHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccch
Q 004923 158 RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQA 226 (723)
Q Consensus 158 ~~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~~ 226 (723)
.++|.+|||.|++ +|||+..+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8999999999996 8999988899999999999999999999999998765 4889999999999999999
Q ss_pred HHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 227 YEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 227 ~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
|||+++|+.+++ |+++|+|||++ ++.+.+.. .+ ..++.
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~------------------------------~~d~~--- 202 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGI-SIDGHVEG-------WF------------------------------TDDTA--- 202 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGG-------TC------------------------------CCCHH---
T ss_pred HHHHHHHHHcCCCcEEEEEECCCc-Eecccccc-------cc------------------------------CccHH---
Confidence 999999999995 59999999984 43211100 00 01223
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc---
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--- 382 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~--- 382 (723)
.+|++|||+++++|||||+++|.++++++++. .++|++||++|.||+|++++++ +.+||+.+
T Consensus 203 -------------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~~~~ 267 (669)
T 2r8o_A 203 -------------MRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG-THDSHGAPLGD 267 (669)
T ss_dssp -------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-SGGGTSSCCCH
T ss_pred -------------HHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCC-CCcccCCCCCH
Confidence 34999999998889999999999999999862 4799999999999999998654 46899873
Q ss_pred ---------------cccCcccc-----------------------------------------ccc-------------
Q 004923 383 ---------------KFDPATGK-----------------------------------------QFK------------- 393 (723)
Q Consensus 383 ---------------~fd~~~g~-----------------------------------------~~~------------- 393 (723)
+|+..++. .++
T Consensus 268 ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 347 (669)
T 2r8o_A 268 AEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAK 347 (669)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhh
Confidence 45443210 000
Q ss_pred --CcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CC
Q 004923 394 --SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GL 465 (723)
Q Consensus 394 --~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~-G~ 465 (723)
...+..+++++++++|.++++.+|+++++++|+++|+++ ..|+++||+||||+||+|++|+++|+|+|++ |+
T Consensus 348 ~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~ 427 (669)
T 2r8o_A 348 LQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGF 427 (669)
T ss_dssp HHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred hcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCC
Confidence 001123567888899999999999999999999877654 4799999999999999999999999999999 89
Q ss_pred eeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 466 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 466 ~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
+||++||++|+.++++||+ +++++++||++++++.|+ +|+||+|||+++|++++|++|||+|++|+|++|+..++++|
T Consensus 428 ~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a 506 (669)
T 2r8o_A 428 LPYTSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYG 506 (669)
T ss_dssp EEEEEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999999975 589999999999987776 79999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCccccCCCCCCC-CCcccCceEEeee--C-CcEEEEEecchHHHHHHHHHHHHhCCCceEEeec
Q 004923 545 AAIDDRPSCFRYPRGNGIGVELPPGNKG-IPLEVGKGRILIE--G-ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~~~~p~~~~~-~~~~~gk~~vl~e--G-~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~ 620 (723)
++..++|++||++|+..+. ++..... ..+++| ++++++ | +||+||++|++++.|++|+++|+++||+++|||+
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~ 583 (669)
T 2r8o_A 507 VERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSM 583 (669)
T ss_dssp HHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9865899999999986432 2221000 125677 488888 8 8999999999999999999999999999999999
Q ss_pred CccccccHH---HHHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCC
Q 004923 621 RFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 696 (723)
Q Consensus 621 ~~ikP~d~~---~i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl 696 (723)
+|++|||.+ ++.++++++ +++|++|++..+||++ ++.+++ +.+|+ |.|+.+|+++++++++||
T Consensus 584 ~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~Gl 650 (669)
T 2r8o_A 584 PSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEFGF 650 (669)
T ss_dssp SCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHTTC
T ss_pred ccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHhCC
Confidence 999999988 477788774 7899999998888985 443332 45788 799999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 004923 697 TPSHIAATVFNILGQ 711 (723)
Q Consensus 697 ~~e~I~~~i~~ll~~ 711 (723)
|+++|+++|++++..
T Consensus 651 ~~~~I~~~~~~~~~~ 665 (669)
T 2r8o_A 651 TVDNVVAKAKELLHH 665 (669)
T ss_dssp SHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998753
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=8.9e-95 Score=848.24 Aligned_cols=540 Identities=22% Similarity=0.296 Sum_probs=462.4
Q ss_pred HHHH-HHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh--ccCC------CCcEEEeCCCchH---HHHHHHcCC--
Q 004923 93 ELKQ-LADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY--VFNA------PKDRILWDVGHQT---YPHKILTGR-- 157 (723)
Q Consensus 93 ~l~~-la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~--~~~~------p~D~~i~s~GH~~---y~~~~l~G~-- 157 (723)
+|++ +|++||.++++++++ ++||+|++||++|++++||+ .||. ++||||||+||++ |+|++|+|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 999999999999986 89999999999999999997 6653 4899999999999 999999999
Q ss_pred -hhHhHHHHhcCCC-CCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccc
Q 004923 158 -RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQ 225 (723)
Q Consensus 158 -~~~l~~~r~~~gl-~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~ 225 (723)
.++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 7999999999995 999998 899999999999999999999999999775 488999999999999999
Q ss_pred hHHHHHHhhhcCCC-EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHH
Q 004923 226 AYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (723)
Q Consensus 226 ~~EAln~A~~~~~n-li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 304 (723)
+|||+|+|+.+++| +++|+|||++ ++.+.+... + ..++.
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~~-------~------------------------------~~d~~-- 204 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKI-TIDGATSIS-------F------------------------------DEDVA-- 204 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGT-------C------------------------------CCCHH--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCc-eEecccccc-------c------------------------------CccHH--
Confidence 99999999999954 9999999984 432211000 0 01223
Q ss_pred HHHHhhcccCCCccchhhccCCeEEEecCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc-
Q 004923 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA- 382 (723)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vDGh-d~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~- 382 (723)
.+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++ .+ ++.+||+.+
T Consensus 205 --------------~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~~ 267 (680)
T 1gpu_A 205 --------------KRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA-GSHSVHGAPL 267 (680)
T ss_dssp --------------HHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT-TSGGGSSSCC
T ss_pred --------------HHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC-CCCccCCCCC
Confidence 34999999998899999 999999999999862 479999999999999998 34 456899975
Q ss_pred ------------------cccCcccc-------------c--------c----------------------c--------
Q 004923 383 ------------------KFDPATGK-------------Q--------F----------------------K-------- 393 (723)
Q Consensus 383 ------------------~fd~~~g~-------------~--------~----------------------~-------- 393 (723)
+|+..++. . + +
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~ 347 (680)
T 1gpu_A 268 KADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLP 347 (680)
T ss_dssp CHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSC
T ss_pred CHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhch
Confidence 45543221 0 0 0
Q ss_pred ---CcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh-----hhhhh------hCCCceeeccccHHHHHHHHHH
Q 004923 394 ---SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR------RFPTRCFDVGIAEQHAVTFAAG 459 (723)
Q Consensus 394 ---~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~------~~p~R~id~GIaE~~~v~~AaG 459 (723)
...+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|
T Consensus 348 ~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~G 427 (680)
T 1gpu_A 348 TYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNG 427 (680)
T ss_dssp CCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHH
T ss_pred hhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHH
Confidence 011234678899999999999999999999999877654 46888 9999999999999999999999
Q ss_pred HHhcC-Ce-eEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHH
Q 004923 460 LACEG-LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 536 (723)
Q Consensus 460 lA~~G-~~-p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E 536 (723)
+|++| ++ ||++||++|+.++++|| ++++++++||++++++.|+ +|+||+|||+++|++++|++||++|++|+|++|
T Consensus 428 lA~~Gg~~~P~~~~f~~F~~~~~~ai-r~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e 506 (680)
T 1gpu_A 428 ISAFGANYKPYGGTFLNFVSYAAGAV-RLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNE 506 (680)
T ss_dssp HHHHCTTCEEEEEEEHHHHGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHH
T ss_pred HHhcCCCceEEEeehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHH
Confidence 99998 99 99999999999999997 4589999999999987776 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCCCCccccCCCCCCCCC-cccCceEEeeeC--CcEEEEEecchHHHHHHHHHHHHhCCC
Q 004923 537 LFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIP-LEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGL 613 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~~r~~~~~~~~p~~~~~~~-~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi 613 (723)
++.++++|++..++|++||++|+..+.. +. ..+. +++| ++++++| .||+||++|++++.|++|+++|+++||
T Consensus 507 ~~~~l~~A~~~~~~Pv~i~~~r~~~~~~--~~--~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi 581 (680)
T 1gpu_A 507 VSAAYKNSLESKHTPSIIALSRQNLPQL--EG--SSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNI 581 (680)
T ss_dssp HHHHHHHHHHCSSCCEEEECCSSCBCCC--TT--CCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCC--CC--cchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 9999999998558999999999875432 22 1223 5677 5889998 899999999999999999999999999
Q ss_pred ceEEeecCccccccHH---HHHHHhcCC-CEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHH
Q 004923 614 RLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPAD 689 (723)
Q Consensus 614 ~v~VId~~~ikP~d~~---~i~~~~~~~-~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~e 689 (723)
+++|||++|++|||.+ .+.++++++ +. |+||++..+||+++| + .. +++ |.|+.+|+.++
T Consensus 582 ~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v-------~-------~~-~gv-~~f~~~g~~~~ 644 (680)
T 1gpu_A 582 KARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA-------H-------QS-FGI-DRFGASGKAPE 644 (680)
T ss_dssp CEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC-------S-------EE-ECC-CSCCCCSCHHH
T ss_pred CEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc-------C-------cc-eee-CcCCCCCCHHH
Confidence 9999999999999998 466677775 55 999999888988543 1 11 676 79999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcch
Q 004923 690 QLAQAGLTPSHIAATVFNILGQTR 713 (723)
Q Consensus 690 l~~~~gl~~e~I~~~i~~ll~~~~ 713 (723)
+++++|+|+++|+++|+++++..+
T Consensus 645 l~~~~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 645 VFKFFGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHhhc
Confidence 999999999999999999986543
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=8e-94 Score=838.61 Aligned_cols=540 Identities=20% Similarity=0.268 Sum_probs=462.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhh---ccC--C----CCcEEEeCCCchH---HHHHHHcCC--
Q 004923 93 ELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN--A----PKDRILWDVGHQT---YPHKILTGR-- 157 (723)
Q Consensus 93 ~l~~la~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~---~~~--~----p~D~~i~s~GH~~---y~~~~l~G~-- 157 (723)
+|+++|++||+++++|+++ ++||+|++||++|++++||+ .++ + +|||||||+||++ |++++|+|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 3788999999999999985 99999999999999999986 343 2 3899999999999 999999999
Q ss_pred -hhHhHHHHhcCC-CCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcC----------CCCeEEEEEcCCcccccc
Q 004923 158 -RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQ 225 (723)
Q Consensus 158 -~~~l~~~r~~~g-l~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g----------~~~~vv~viGDGa~~~G~ 225 (723)
.++|.+|||.|+ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 589999999998 57999988889999999999999999999999999876 589999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHH
Q 004923 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (723)
Q Consensus 226 ~~EAln~A~~~~~-nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k 304 (723)
+|||+++|+++++ |+|+|+|||++ ++.+.+.. . + .+++.+
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~-~i~~~~~~-----~--~------------------------------~~d~~~- 205 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYI-SIDGSTSL-----S--F------------------------------TEQCHQ- 205 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSB-CSSSBGGG-----T--C------------------------------CCCHHH-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCC-ccccchhh-----c--c------------------------------CHhHHH-
Confidence 9999999999995 59999999984 43221110 0 0 023333
Q ss_pred HHHHhhcccCCCccchhhccCCeEEEecCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc-
Q 004923 305 VDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA- 382 (723)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vDG-hd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~- 382 (723)
+|++|||+++..||| ||+++|.++++++++. .++|++|+++|+||+|++ +| +..+||+.+
T Consensus 206 ---------------~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~~ 267 (673)
T 1r9j_A 206 ---------------KYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ-GTEKVHGAPL 267 (673)
T ss_dssp ---------------HHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT-TSGGGTSSCC
T ss_pred ---------------HHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC-CCcccccCCC
Confidence 399999999888999 9999999999999863 579999999999999998 44 457899974
Q ss_pred ------------------cccCccc------------cc--------cc------C------------c-----------
Q 004923 383 ------------------KFDPATG------------KQ--------FK------S------------S----------- 395 (723)
Q Consensus 383 ------------------~fd~~~g------------~~--------~~------~------------~----------- 395 (723)
+|+..++ +. +. + +
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~ 347 (673)
T 1r9j_A 268 GEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT 347 (673)
T ss_dssp CHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCC
T ss_pred CHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccc
Confidence 2322110 00 00 0 0
Q ss_pred -chhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChh--h-----hhh-hCCCceeeccccHHHHHHHHHHHHhc-CC
Q 004923 396 -ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN--L-----FLR-RFPTRCFDVGIAEQHAVTFAAGLACE-GL 465 (723)
Q Consensus 396 -~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~--~-----f~~-~~p~R~id~GIaE~~~v~~AaGlA~~-G~ 465 (723)
.+..+++++++++|.++++++|+++++++|+++++++. + |++ +||+|+||+||+|++|+++|+|+|++ |+
T Consensus 348 ~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 348 NSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 01245788999999999999999999999998776653 2 887 99999999999999999999999999 59
Q ss_pred eeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 466 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 466 ~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
+||++||++|+.++++||+ +++++++||++++++.|+ +|+||+|||+++|+++++++||++|++|+|++|+..++++|
T Consensus 428 ~P~~~~~~~F~~~~~~~ir-~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a 506 (673)
T 1r9j_A 428 IPFGGTFLNFIGYALGAVR-LAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVA 506 (673)
T ss_dssp EEEEEEEGGGGGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999975 589999999999987776 79999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCccccCCCCCCCC-CcccCceEEeeeC--CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 545 AAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~~gk~~vl~eG--~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
++..++|++||++|++.+. ++. ..+ .++.| ++++++| +||+||++|++++.|++|+++|+++ |+++|||++
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~ 580 (673)
T 1r9j_A 507 LSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMP 580 (673)
T ss_dssp HHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECS
T ss_pred HHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 9866899999999986432 222 122 36678 6899998 8999999999999999999999988 999999999
Q ss_pred ccccccHHH---HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCH
Q 004923 622 FCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTP 698 (723)
Q Consensus 622 ~ikP~d~~~---i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~ 698 (723)
|++|||.+. +.++++++.++|++|++..+||++++ +++ +|+ |.|+++|+.+++++++|+|+
T Consensus 581 sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~~ 644 (673)
T 1r9j_A 581 CQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGITV 644 (673)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCSH
T ss_pred CCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcCH
Confidence 999999985 88999988889999999888987543 133 888 99999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 004923 699 SHIAATVFNILGQT 712 (723)
Q Consensus 699 e~I~~~i~~ll~~~ 712 (723)
++|+++|++++++.
T Consensus 645 ~~I~~~i~~~l~~~ 658 (673)
T 1r9j_A 645 EEVVRTGRELAKRF 658 (673)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998553
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=8.5e-92 Score=834.41 Aligned_cols=610 Identities=20% Similarity=0.232 Sum_probs=478.5
Q ss_pred CCCCcCCCCCccccccCCHHHHH-HHHHHHHHHHHHHhhh-c------CCCCCCcccHHHHHHHHhhc-cCC-----CCc
Q 004923 73 PTPLLDTINYPIHMKNLSIRELK-QLADELRADVIFNVSK-T------GGHLGSSLGVIELTVALHYV-FNA-----PKD 138 (723)
Q Consensus 73 ~~~~l~~i~~~~~~k~~~~~~l~-~la~~iR~~i~~~v~~-~------~GH~gsslg~~el~~aL~~~-~~~-----p~D 138 (723)
.||+|++|+.|.+.+.-...+|+ ++|++||+++++||++ + |||+|+++|++||+++||++ |+. ++|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 68999999777777766666899 8999999999999986 6 79999999999999999865 665 689
Q ss_pred EEEeCCCchH---HHHHHHcCCh--hHhHHHHh---cCCCCCCCCCCCCCc-CccCCcccchhhHHHHHHHHHhhh----
Q 004923 139 RILWDVGHQT---YPHKILTGRR--DKMHTMRQ---TDGLSGFTKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL---- 205 (723)
Q Consensus 139 ~~i~s~GH~~---y~~~~l~G~~--~~l~~~r~---~~gl~g~~~~~e~~~-~~~g~G~~G~~ls~AlG~A~A~~~---- 205 (723)
||||+||++ |+|++|+||. ++|++||| .+|++|||++.++++ +.|++||+|+|+++|+|+|+|+++
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999995 89999999 567999999988887 999999999999999999999998
Q ss_pred ---cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhH
Q 004923 206 ---KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLR 281 (723)
Q Consensus 206 ---~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~ 281 (723)
++.+++||||+|||++++|++|||+|+|+.++ .|||||||||++ ++ ++++...+.+...|.+.
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~-si-----~~~v~~~~~~~~~l~~~------- 281 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ-RL-----DGPVTGNGKIINELEGI------- 281 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB-CS-----SSBSCTTSCHHHHHHHH-------
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCc-cc-----CCCccccccccHHHHHH-------
Confidence 78899999999999999999999999999999 589999999994 55 33333222344444432
Q ss_pred HHHHHhhhhccc-cCCchHHHHH---------HHH---H------------HhhcccCCC---ccchh---hccCCeEEE
Q 004923 282 ELREVAKGVTKQ-IGGPMHELAA---------KVD---E------------YARGMISGS---GSTLF---EELGLYYIG 330 (723)
Q Consensus 282 ~lr~~~~~~~~~-~g~~~~~~~~---------k~~---~------------~~~~~~~~~---~~~lf---ea~G~~~~~ 330 (723)
++...|...+. +|..++.+.. .++ + ++|+.+... -..+. ...|++|+
T Consensus 282 -~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l- 359 (886)
T 2qtc_A 282 -FEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL- 359 (886)
T ss_dssp -HHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-
T ss_pred -HHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-
Confidence 33444444443 2333322221 111 1 233221111 01112 22378888
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhcccccCCcc--------------------------cc
Q 004923 331 PVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--------------------------KF 384 (723)
Q Consensus 331 ~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H~~~--------------------------~f 384 (723)
++||||+++|.++++++++. .++|++||++|+||+|++++++++.++|+.. +|
T Consensus 360 ~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f 438 (886)
T 2qtc_A 360 NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPY 438 (886)
T ss_dssp CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCC
T ss_pred ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccc
Confidence 99999999999999999874 3699999999999999987777778999874 45
Q ss_pred cCccc-----------------cc------------ccC----------cchhhHHHHHHHHHHHHHHhcC---CCEEEE
Q 004923 385 DPATG-----------------KQ------------FKS----------SARTQSYTTYFAEALIAEAEVD---KDVVAI 422 (723)
Q Consensus 385 d~~~g-----------------~~------------~~~----------~~~~~~~~~~~~~aL~~~~~~d---~~iv~i 422 (723)
+..+. .. ++. ..+..+++++|+++|.++++++ ++|+++
T Consensus 439 ~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i 518 (886)
T 2qtc_A 439 ITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPI 518 (886)
T ss_dssp CCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEE
T ss_pred cCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 43331 00 010 0123478999999999999988 899999
Q ss_pred eccCC---CC------cCh-----hhhh-----------hhCCCceeeccccHHHH-H---HHHHHHHhcC--CeeEEee
Q 004923 423 HAAMG---GG------TGL-----NLFL-----------RRFPTRCFDVGIAEQHA-V---TFAAGLACEG--LKPFCAI 471 (723)
Q Consensus 423 ~aD~~---gs------~~l-----~~f~-----------~~~p~R~id~GIaE~~~-v---~~AaGlA~~G--~~p~~~t 471 (723)
++|+. |+ +++ ..|. +.||+|+||+||+|++| + ++|+|+|++| ++||+.+
T Consensus 519 ~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ 598 (886)
T 2qtc_A 519 IADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIY 598 (886)
T ss_dssp ESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEE
T ss_pred cCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEE
Confidence 99944 32 222 4454 68899999999999995 5 6999999999 8999999
Q ss_pred hhHH-HHHHHHHHHHHhhcCCCCEEEEeeCCCC-CCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCC
Q 004923 472 YSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 549 (723)
Q Consensus 472 ~s~F-l~ra~dqi~~~~a~~~lpv~~v~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~ 549 (723)
|++| +||++||+++++++++.++++..+..+. +|+||+|||+.+|+++++++||++|++|+|++|+..++++|++..+
T Consensus 599 ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~ 678 (886)
T 2qtc_A 599 YSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMY 678 (886)
T ss_dssp EGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcC
Confidence 9999 8999999999999999999998764433 6899999999999999999999999999999999999999998667
Q ss_pred CC----EEEEecCCC--CccccCCCCCCCCCcccCceEEeeeC----CcEEEEEecchHHHHHHHHHHHHhC-CCceEEe
Q 004923 550 RP----SCFRYPRGN--GIGVELPPGNKGIPLEVGKGRILIEG----ERVALLGYGTAVQSCLAASALLESN-GLRLTVA 618 (723)
Q Consensus 550 ~P----~~ir~~r~~--~~~~~~p~~~~~~~~~~gk~~vl~eG----~dv~Iva~Gs~v~~al~Aa~~L~~~-Gi~v~VI 618 (723)
+| ++|+++|++ .....+|.. ....+ +++++++++| +||+||++|+++++|++|+++|+++ ||+++||
T Consensus 679 gP~~e~v~i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vv 756 (886)
T 2qtc_A 679 GEKQENVYYYITTLNENYHMPAMPEG-AEEGI-RKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVY 756 (886)
T ss_dssp STTCCCCEEEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCCceEEEEEeCCccccCCCCCCcc-hhhhc-cCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEE
Confidence 89 999999965 210122321 01223 7889999987 7999999999999999999999998 9999999
Q ss_pred ecCccccccHHH-------------------HHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCC
Q 004923 619 DARFCKPLDHAL-------------------IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPD 679 (723)
Q Consensus 619 d~~~ikP~d~~~-------------------i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d 679 (723)
|++|++|||+++ +.+.+.. ..+|++|++.. |+++.+..++. ..+++.+|+ |
T Consensus 757 d~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~-------~~~~~~lG~-D 826 (886)
T 2qtc_A 757 SVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVP-------ADDYRVLGT-D 826 (886)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCC-------SSCEEEECC-C
T ss_pred ECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcC-------CCCeEEEEe-C
Confidence 999999999875 5566656 67899998765 55544433321 157788999 9
Q ss_pred ccccCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 680 RYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 680 ~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
.|+.+|+++++++++|+|+++|++++++++.+
T Consensus 827 ~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~ 858 (886)
T 2qtc_A 827 GFGRSDSRENLRHHFEVDASYVVVAALGELAK 858 (886)
T ss_dssp SCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998854
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=1.7e-71 Score=648.30 Aligned_cols=563 Identities=14% Similarity=0.166 Sum_probs=437.3
Q ss_pred CccccccCCHHHHHHHHHHHHHHHHHHh--------------h-hcCCCCCCcccHHHHHHHHhhcc-CCCCcE-EEeCC
Q 004923 82 YPIHMKNLSIRELKQLADELRADVIFNV--------------S-KTGGHLGSSLGVIELTVALHYVF-NAPKDR-ILWDV 144 (723)
Q Consensus 82 ~~~~~k~~~~~~l~~la~~iR~~i~~~v--------------~-~~~GH~gsslg~~el~~aL~~~~-~~p~D~-~i~s~ 144 (723)
++.+|+. ++.+-+.|+.|+---+++. + +.+||+|+++|++++++.+..+. ...+|| ||+|+
T Consensus 38 ~~~~l~~--~~~~~raanyl~~~~iyl~~n~ll~r~L~~d~vk~a~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~ 115 (845)
T 3ahc_A 38 SEEAIEG--MDKYWRVTNYMSIGQIYLRSNPLMKEPFTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGP 115 (845)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHHHHBSSCTTCCSSCCGGGBCSSCCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESS
T ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHhcCccccCcCCHHHhhhcCCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECc
Confidence 5556655 4456677787776665543 4 36899999999999955543332 235899 79999
Q ss_pred CchH---HHHHHHcCC-----------hhHhHH-HHhcC---CCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhc
Q 004923 145 GHQT---YPHKILTGR-----------RDKMHT-MRQTD---GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK 206 (723)
Q Consensus 145 GH~~---y~~~~l~G~-----------~~~l~~-~r~~~---gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~ 206 (723)
||.+ |+.++|.|. .++|++ |||+. |++|||.+ +.++....+|.||+|++.|+|||+ .
T Consensus 116 GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~----~ 190 (845)
T 3ahc_A 116 GHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVM----N 190 (845)
T ss_dssp GGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----T
T ss_pred CcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhh----c
Confidence 9999 999999997 366766 67764 58999976 688999999999999999999995 4
Q ss_pred CCCCeEEEEEcCCcccccc---hHHHHHHhhhcC-CCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHH
Q 004923 207 GRKNNVVAVIGDGAMTAGQ---AYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRE 282 (723)
Q Consensus 207 g~~~~vv~viGDGa~~~G~---~~EAln~A~~~~-~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~ 282 (723)
+++.+|+|++|||++++|+ .||+.++|..++ .||++|+++|+. ++ +|++. ...+
T Consensus 191 ~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~-~i-----~g~t~-l~~~--------------- 248 (845)
T 3ahc_A 191 NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY-KI-----ANPTI-LARI--------------- 248 (845)
T ss_dssp CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB-SS-----SSBCH-HHHS---------------
T ss_pred CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC-cC-----CCCcc-cccc---------------
Confidence 5689999999999999999 999999998876 999999999993 43 33321 0000
Q ss_pred HHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCC-C--CHHHHHHHHHH-------------
Q 004923 283 LREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-H--NVDDLVAILEE------------- 346 (723)
Q Consensus 283 lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDG-h--d~~~l~~al~~------------- 346 (723)
+.+++.++ |++|||+++..||| | |+++|.+++.+
T Consensus 249 --------------~~e~l~~r----------------f~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~ 298 (845)
T 3ahc_A 249 --------------SDEELHDF----------------FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIK 298 (845)
T ss_dssp --------------CHHHHHHH----------------HHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CcHHHHHH----------------HHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566666 99999998767899 9 99998877542
Q ss_pred --hhhcCCCCc--EEEEEEeccCC-------CcchhhhcccccCCccc-------------------------ccC----
Q 004923 347 --VKNTKTTGP--VLIHVVTEKGR-------GYPYAEKAADKYHGVAK-------------------------FDP---- 386 (723)
Q Consensus 347 --a~~~~~~~P--~~I~v~T~kg~-------G~~~~e~~~~~~H~~~~-------------------------fd~---- 386 (723)
++....++| ++|+++|.||+ |.+ +|+. .+||++++ |+.
T Consensus 299 ~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~-~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~ 376 (845)
T 3ahc_A 299 AAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGS-WRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSI 376 (845)
T ss_dssp HHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTS-GGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCB
T ss_pred HHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCC-ccccCCCCCCcccCHHHHHHHhhhccCCCchhccCCchHH
Confidence 232123689 99999999999 995 6654 68999863 211
Q ss_pred --------ccccc------------ccC-----cc-------------h--hhHHHHHHHHHHHHHHhcCCC-EEEEecc
Q 004923 387 --------ATGKQ------------FKS-----SA-------------R--TQSYTTYFAEALIAEAEVDKD-VVAIHAA 425 (723)
Q Consensus 387 --------~~g~~------------~~~-----~~-------------~--~~~~~~~~~~aL~~~~~~d~~-iv~i~aD 425 (723)
..|.. +.. .. . ...-+.+++++|.++++.+|+ ++++++|
T Consensus 377 ~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sAD 456 (845)
T 3ahc_A 377 KDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPD 456 (845)
T ss_dssp CHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESS
T ss_pred HHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 00000 000 00 0 112357788999999999999 9999999
Q ss_pred CCCCcChhhhhhh---------C--C--------CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHH---HHHHHH-
Q 004923 426 MGGGTGLNLFLRR---------F--P--------TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQ- 482 (723)
Q Consensus 426 ~~gs~~l~~f~~~---------~--p--------~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl---~ra~dq- 482 (723)
+.+|+.+..|.+. + | +|||+ ||+||+|+++++|+|++|.+||+.+|++|+ .|+++|
T Consensus 457 l~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~ 535 (845)
T 3ahc_A 457 ETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQH 535 (845)
T ss_dssp CTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHH
T ss_pred CCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHH
Confidence 9999999888777 6 7 89999 999999999999999999999999988887 899999
Q ss_pred ---HHHHhhcC----CC-CEEEEeeCCCC-CCCCCCCCCc--hhhHhhhh---cCCCcEEEccCCHHHHHHHHHHHHHhC
Q 004923 483 ---VVHDVDLQ----KL-PVRFAMDRAGL-VGADGPTHCG--SFDVTFMA---CLPNMVVMAPSDEAELFHMVATAAAID 548 (723)
Q Consensus 483 ---i~~~~a~~----~l-pv~~v~~~~G~-~G~dG~tH~~--~~d~a~~~---~iP~l~V~~Psd~~E~~~~l~~A~~~~ 548 (723)
|+..++++ .+ +|++++++.|+ +|+||||||+ .+|+..++ .+||++|++|+|++|+..+++.|++..
T Consensus 536 akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~ 615 (845)
T 3ahc_A 536 AKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKST 615 (845)
T ss_dssp HHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCB
T ss_pred HHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcC
Confidence 77663554 45 69999999998 8999999999 45555555 779999999999999999999999865
Q ss_pred CCCEEEEecCCCCccccCCCCCCCCCcccCceEEe---ee--C--CcEEEEEecchH-HHHHHHHHHHHhCCCceEEeec
Q 004923 549 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL---IE--G--ERVALLGYGTAV-QSCLAASALLESNGLRLTVADA 620 (723)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl---~e--G--~dv~Iva~Gs~v-~~al~Aa~~L~~~Gi~v~VId~ 620 (723)
+.|.+++++|++++.+. +.......+..|++.+. ++ | .||+|+++|+++ .+|++|+++|+++||+++|||+
T Consensus 616 ~~~~v~v~sRq~~p~~~-~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm 694 (845)
T 3ahc_A 616 NKINAIFAGKQPAPTWV-TLDEARAELEAGAAEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNV 694 (845)
T ss_dssp SCEEEEECCCSCEEECS-CHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEecCCCCCccC-CchhhhhhhcCCeEEEEeecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 66666666998865431 11000013456666555 35 5 799999999875 5599999999999999999999
Q ss_pred Ccc---ccccHHHHHHHhcCCCEEEEEcCCC---CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHc
Q 004923 621 RFC---KPLDHALIRSLAKSHEVLITVEEGS---IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQA 694 (723)
Q Consensus 621 ~~i---kP~d~~~i~~~~~~~~~vvvvEe~~---~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~ 694 (723)
+++ +|.+++.+-...+..+.|+++|++. .||+++.|++.+.++. .+.++.++|++| |+.+|++.++++++
T Consensus 695 ~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~ 770 (845)
T 3ahc_A 695 VDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVN 770 (845)
T ss_dssp CBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTT
T ss_pred CCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHh
Confidence 999 5655443322333456788889886 4999999999888762 246899999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 004923 695 GLTPSHIAATVFNILGQ 711 (723)
Q Consensus 695 gl~~e~I~~~i~~ll~~ 711 (723)
|||.++|++++++++..
T Consensus 771 gld~~~Iv~~a~~~l~~ 787 (845)
T 3ahc_A 771 DMDRYALQAAALKLIDA 787 (845)
T ss_dssp TCSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHcch
Confidence 99999999999998873
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=6.6e-61 Score=571.46 Aligned_cols=551 Identities=15% Similarity=0.141 Sum_probs=392.3
Q ss_pred cCCHHHHHHHH---HHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--cC
Q 004923 88 NLSIRELKQLA---DELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--TG 156 (723)
Q Consensus 88 ~~~~~~l~~la---~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~G 156 (723)
+++.+++.++- ..+|.+--++..+ .+|-.-+..|..-+.+++.+.++ .++|.++ ...|+.+.+.+. .|
T Consensus 194 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~-g~~hRg~~~~Lan~~G 272 (933)
T 2jgd_A 194 TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVL-GMAHRGRLNVLVNVLG 272 (933)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEE-ECCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEe-cCCCcCHHHHHHHHhC
Confidence 35555555443 2334333334433 23332335676666666554443 3577655 348999999888 77
Q ss_pred C--hhHhHHHHhcCCCCCCCCCCCCC------------c------CccCCcccchhhHHHHHHHHHhhhcC-----CCCe
Q 004923 157 R--RDKMHTMRQTDGLSGFTKRSESE------------Y------DCFGTGHSSTSISAGLGMAVGRDLKG-----RKNN 211 (723)
Q Consensus 157 ~--~~~l~~~r~~~gl~g~~~~~e~~------------~------~~~g~G~~G~~ls~AlG~A~A~~~~g-----~~~~ 211 (723)
. .+.|..|. |...|.....+.+ + ..+..+|+|+++|+|+|+|+|+++++ .+.+
T Consensus 273 ~~~~~i~~e~~--G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~ 350 (933)
T 2jgd_A 273 KKPQDLFDEFA--GKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVL 350 (933)
T ss_dssp CCHHHHHHHHH--TCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEE
T ss_pred CCHHHHHHHhc--CCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeE
Confidence 5 45566662 2212221111100 1 13577999999999999999999884 6789
Q ss_pred EEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCCcCc-cCCCCCCCCcchhhHHHhhhhcChhhHHHHHH
Q 004923 212 VVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPT-ATLDGPIPPVGALSSALSRLQSNRPLRELREV 286 (723)
Q Consensus 212 vv~viGDGa~-~~G~~~EAln~A~~~~~n---li~Il~dN~~~s~~t-~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~ 286 (723)
+||++|||++ ++|++|||||+|+.+++| +|+||+||+ +++.| ...+.. .
T Consensus 351 vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist~~~~~~~------~------------------- 404 (933)
T 2jgd_A 351 PITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTTSNPLDAR------S------------------- 404 (933)
T ss_dssp EEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------------------------
T ss_pred EEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccCCCHHhcc------c-------------------
Confidence 9999999998 999999999999999999 999999998 45433 221100 0
Q ss_pred hhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEecc
Q 004923 287 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEK 364 (723)
Q Consensus 287 ~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~~I~v~T~k 364 (723)
+.+...+++++||.++ .|||+|++++.++++++++. ..++|++|++.|++
T Consensus 405 ---------------------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 405 ---------------------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp -----------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred ---------------------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 0112334899999988 78999999999999877631 24789999999999
Q ss_pred CCCcchhhh---------------------------------------------------------------cccccCCc
Q 004923 365 GRGYPYAEK---------------------------------------------------------------AADKYHGV 381 (723)
Q Consensus 365 g~G~~~~e~---------------------------------------------------------------~~~~~H~~ 381 (723)
++|+...+. .+..||+.
T Consensus 457 ~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~ 536 (933)
T 2jgd_A 457 RHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPY 536 (933)
T ss_dssp CC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGG
T ss_pred ecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccc
Confidence 999754321 00123443
Q ss_pred ccc----cCccccccc----------C---c--------------------chhhHHHHHHHHHHHHHHhcCCCEEEEec
Q 004923 382 AKF----DPATGKQFK----------S---S--------------------ARTQSYTTYFAEALIAEAEVDKDVVAIHA 424 (723)
Q Consensus 382 ~~f----d~~~g~~~~----------~---~--------------------~~~~~~~~~~~~aL~~~~~~d~~iv~i~a 424 (723)
.++ ++.||.... . . .+..+|..+++.+|.+++++|++|+++++
T Consensus 537 ~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~ 616 (933)
T 2jgd_A 537 LNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGE 616 (933)
T ss_dssp SSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEET
T ss_pred cccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 332 233332100 0 0 00246788899999999999999999999
Q ss_pred cCCCC------------------cChhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCe--eEEe-ehhHHHH---HH
Q 004923 425 AMGGG------------------TGLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLK--PFCA-IYSSFMQ---RA 479 (723)
Q Consensus 425 D~~gs------------------~~l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~--p~~~-t~s~Fl~---ra 479 (723)
|++.+ +.+..|+++| |+|++|+||+|++++|+|+|+|+.|.+ |+++ +|++|++ |+
T Consensus 617 Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra 696 (933)
T 2jgd_A 617 DSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVV 696 (933)
T ss_dssp TTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHH
T ss_pred ccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHH
Confidence 99876 4567899999 999999999999999999999999998 9886 6999986 99
Q ss_pred HHHHHHHh-h--cCCCCEEEEeeCCCCCCCCCCCCCc--hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh-CCCCEE
Q 004923 480 YDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI-DDRPSC 553 (723)
Q Consensus 480 ~dqi~~~~-a--~~~lpv~~v~~~~G~~G~dG~tH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~-~~~P~~ 553 (723)
+||+++++ + .+++||++++++ |+.| .|++||+ .+++..++++|||+|++|+|+.|+++++++++.+ .++|++
T Consensus 697 ~DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvi 774 (933)
T 2jgd_A 697 IDQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLV 774 (933)
T ss_dssp HHHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEE
T ss_pred HHHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEE
Confidence 99999888 6 469999999998 5455 4999999 5555555667999999999999999999999644 389999
Q ss_pred EEecCCCCcc-ccCCC----CCCCCCcccCceEEeeeCCcE--EEEEecchHHHHHHHHHHHHhCCCceEEeecCccccc
Q 004923 554 FRYPRGNGIG-VELPP----GNKGIPLEVGKGRILIEGERV--ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPL 626 (723)
Q Consensus 554 ir~~r~~~~~-~~~p~----~~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~ 626 (723)
|++||..+.. ..+++ ....+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++++||
T Consensus 775 i~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pl 851 (933)
T 2jgd_A 775 VMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPF 851 (933)
T ss_dssp EEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESC
T ss_pred EEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCC
Confidence 9999875321 11110 0023456788888777 8899 7777777777777777888654 8999999999999
Q ss_pred cHHHHHHHhcCCC---EEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCcccc-CCCHHHHHHHcCCCHHHH
Q 004923 627 DHALIRSLAKSHE---VLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPADQLAQAGLTPSHI 701 (723)
Q Consensus 627 d~~~i~~~~~~~~---~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~-~g~~~el~~~~gl~~e~I 701 (723)
|.++|.+++++++ .||++||+. .||+|++|+..+.+.+.. ..+++++|.+|.|.+ .|...... ...+.|
T Consensus 852 d~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~~~~h~----~~~~~i 925 (933)
T 2jgd_A 852 PHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGHMSVHQ----KQQQDL 925 (933)
T ss_dssp CHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSCHHHHH----HHHHHH
T ss_pred CHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCCHHHHH----HHHHHH
Confidence 9999999999887 899999986 799999999999876531 368999999999998 45433322 345666
Q ss_pred HHHHH
Q 004923 702 AATVF 706 (723)
Q Consensus 702 ~~~i~ 706 (723)
++.+.
T Consensus 926 ~~~a~ 930 (933)
T 2jgd_A 926 VNDAL 930 (933)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=2.1e-60 Score=519.65 Aligned_cols=338 Identities=24% Similarity=0.302 Sum_probs=244.1
Q ss_pred EeccCCCcch-hhhcccccCCcccccCcccccccC-c--chhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc----Ch
Q 004923 361 VTEKGRGYPY-AEKAADKYHGVAKFDPATGKQFKS-S--ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GL 432 (723)
Q Consensus 361 ~T~kg~G~~~-~e~~~~~~H~~~~fd~~~g~~~~~-~--~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~----~l 432 (723)
.|.||+||.| +|++.++||...|| ++||+..+. . ....+|+++|+++|.+++++|++|+++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 99999999999999 999974332 1 13468999999999999999999999999997322 35
Q ss_pred hhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-ehhHHHHHHHHHHHHHhhcC--------CCCEEEEeeCCC
Q 004923 433 NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAG 502 (723)
Q Consensus 433 ~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t~s~Fl~ra~dqi~~~~a~~--------~lpv~~v~~~~G 502 (723)
..|+++| |+||+|+||+|++|+++|+|+|++|+|||++ +|++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 8899999 9999999999999999999999999999998 69999999999999999977 999999999988
Q ss_pred CCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCcc--ccCCCCCCCCCcccCce
Q 004923 503 LVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKG 580 (723)
Q Consensus 503 ~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~ 580 (723)
.+| +|+|||+.++ ++++++|||+|++|+|++|+++++++|++ .++|++||+|+..... ..+|. ..+.+++|++
T Consensus 169 ~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 666 8999998875 99999999999999999999999999987 7899999998864321 22332 2345788999
Q ss_pred EEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHH
Q 004923 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQF 659 (723)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~ 659 (723)
+++++|.|++|||+|++++.|++|+++|+ | +++|||++|++|||++.+.+++++++.+|++||+. .||||++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999996 8 99999999999999999999998888899999997 69999999999
Q ss_pred HHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 660 LAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 660 l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
+.++++.....++++++++|.|+++|+ +++++|+|+++|+++|+++++
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 998875333568899999999999987 899999999999999998874
No 18
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=5.1e-56 Score=526.86 Aligned_cols=538 Identities=17% Similarity=0.116 Sum_probs=375.1
Q ss_pred cCCHHHHHHHH---HHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--cC
Q 004923 88 NLSIRELKQLA---DELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--TG 156 (723)
Q Consensus 88 ~~~~~~l~~la---~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~G 156 (723)
+++.+++.++- ..+|.+--++..+ .+|-..+..|..-+.+++...++ .++|.+ +...|+...+.+. .|
T Consensus 114 ~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v-~gm~hRg~~~~Lan~~G 192 (868)
T 2yic_A 114 KPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVV-IAMPHRGRLNVLANIVG 192 (868)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEE-EECCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEE-EeccccchHHHHHHHhC
Confidence 46666655443 3344444434432 23334445666555555544432 466754 4357999888887 77
Q ss_pred C--hhHhHHHHhcCCCCCC-C--CCCCCCc-------------------CccCCcccchhhHHHHHHHHHhhhcC-----
Q 004923 157 R--RDKMHTMRQTDGLSGF-T--KRSESEY-------------------DCFGTGHSSTSISAGLGMAVGRDLKG----- 207 (723)
Q Consensus 157 ~--~~~l~~~r~~~gl~g~-~--~~~e~~~-------------------~~~g~G~~G~~ls~AlG~A~A~~~~g----- 207 (723)
. ++.|..|. |...|. . .++-+-| .....||+|+++|.|+|+|+|.++++
T Consensus 193 ~~~~~i~ae~~--G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~ 270 (868)
T 2yic_A 193 KPYSQIFSEFE--GNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 270 (868)
T ss_dssp CCHHHHTTTCC--------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTT
T ss_pred CCHHHHHHHhc--CCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcc
Confidence 4 34444441 111111 0 0100000 11236899999999999999999864
Q ss_pred -----CCCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcCh
Q 004923 208 -----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (723)
Q Consensus 208 -----~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~n---li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~ 278 (723)
.+..+||++|||++ ++|.+|||||+|+.|++| +|+||+||+ +.+.|...+. +
T Consensus 271 ~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~-~g~st~~~~~---------------~--- 331 (868)
T 2yic_A 271 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ-IGFTTAPTDS---------------R--- 331 (868)
T ss_dssp SSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECS-CBTTBCHHHH---------------C---
T ss_pred cccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCC-cccccCcccc---------------c---
Confidence 56799999999996 899999999999999987 999999997 3432211000 0
Q ss_pred hhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcE
Q 004923 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPV 356 (723)
Q Consensus 279 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~ 356 (723)
..++...++++|||.++ .|||||++++.+++++|.+. ..++|+
T Consensus 332 ----------------------------------s~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~Pv 376 (868)
T 2yic_A 332 ----------------------------------SSEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDV 376 (868)
T ss_dssp ----------------------------------SSSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred ----------------------------------cccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 00122345899999988 78999999999999877531 247999
Q ss_pred EEEEEeccCCCcchhhhcc-------cccCCcc-c-------------cc--------------------------C---
Q 004923 357 LIHVVTEKGRGYPYAEKAA-------DKYHGVA-K-------------FD--------------------------P--- 386 (723)
Q Consensus 357 ~I~v~T~kg~G~~~~e~~~-------~~~H~~~-~-------------fd--------------------------~--- 386 (723)
+|+++|++++|++..+... ..|+... + ++ +
T Consensus 377 lIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~ 456 (868)
T 2yic_A 377 VIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI 456 (868)
T ss_dssp EEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999997654310 1222210 0 00 0
Q ss_pred ----------------cccc----------c---ccCc----ch-hh--HHH----H------HHHHH--HHHHHhcCCC
Q 004923 387 ----------------ATGK----------Q---FKSS----AR-TQ--SYT----T------YFAEA--LIAEAEVDKD 418 (723)
Q Consensus 387 ----------------~~g~----------~---~~~~----~~-~~--~~~----~------~~~~a--L~~~~~~d~~ 418 (723)
.|+. . .+.. .+ .+ .-+ + +++++ +..+++++++
T Consensus 457 ~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~ 536 (868)
T 2yic_A 457 EPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKL 536 (868)
T ss_dssp ---------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 0000 0 0000 00 00 001 1 22332 2245889999
Q ss_pred EEEEeccCCCCc------------------Chhhh------hh-hCCCceeeccccHHHHHHHHHHHHhcCC--eeEEe-
Q 004923 419 VVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEGL--KPFCA- 470 (723)
Q Consensus 419 iv~i~aD~~gs~------------------~l~~f------~~-~~p~R~id~GIaE~~~v~~AaGlA~~G~--~p~~~- 470 (723)
|+++++|++.+| .+..| ++ .+|+|++|+||+|++++|+|+|+|+.|. +|+++
T Consensus 537 V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~ea 616 (868)
T 2yic_A 537 VRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEA 616 (868)
T ss_dssp EEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEE
Confidence 999999998763 25678 55 7899999999999999999999999995 45555
Q ss_pred ehhHHHHHH---HHHHHHHh---hcCCCCEEEEeeCCCCCCCCCCCCCc--hhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 471 IYSSFMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 471 t~s~Fl~ra---~dqi~~~~---a~~~lpv~~v~~~~G~~G~dG~tH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
+|++|++++ +||+++++ ..+++||+++++++| .| +||+||+ .+++..++++|||+|++|+|+.|++++++
T Consensus 617 qf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr 694 (868)
T 2yic_A 617 QFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLR 694 (868)
T ss_dssp SSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHH
T ss_pred ehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHH
Confidence 599999877 99998876 356999999999877 67 9999998 77777779999999999999999999999
Q ss_pred HHHHhC-CCCEEEEecCCCCcc-ccCCCC----CCCCCcccCceEE---eeeCCcE--EEEEecchHHHHHHHHHHHHhC
Q 004923 543 TAAAID-DRPSCFRYPRGNGIG-VELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLESN 611 (723)
Q Consensus 543 ~A~~~~-~~P~~ir~~r~~~~~-~~~p~~----~~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~ 611 (723)
+++..+ ++|++|++||..+.. ...++. ...+..++|++.+ +++|+|| +|||+|.+ ..++++++ +++
T Consensus 695 ~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~ 771 (868)
T 2yic_A 695 RHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 771 (868)
T ss_dssp HHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhC
Confidence 987742 499999999874321 111110 0012226888887 7899999 99999998 67776665 567
Q ss_pred C-CceEEeecCccccccHHHHHHHhcCCCE---EEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCcccc-CC
Q 004923 612 G-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HG 685 (723)
Q Consensus 612 G-i~v~VId~~~ikP~d~~~i~~~~~~~~~---vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~-~g 685 (723)
| ++++|||+++|+|||.++|.+++++++. +|++||+. .||+|++|+..+.+. +...+.+++++|.+|.+.+ +|
T Consensus 772 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d~~~p~~g 850 (868)
T 2yic_A 772 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSG 850 (868)
T ss_dssp TCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECCCSSSSCS
T ss_pred CCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCCcCCCCCC
Confidence 8 9999999999999999999999998876 78888775 799999999999873 2111357899999999998 45
Q ss_pred CHH
Q 004923 686 SPA 688 (723)
Q Consensus 686 ~~~ 688 (723)
+..
T Consensus 851 ~~~ 853 (868)
T 2yic_A 851 SSK 853 (868)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 19
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.8e-55 Score=530.24 Aligned_cols=538 Identities=16% Similarity=0.110 Sum_probs=375.4
Q ss_pred cCCHHHHHHHH---HHHHHHHHHHhhh-cCCCCCCcccHHHHHHHHhhccC-----CCCcEEEeCCCchHHHHHHH--cC
Q 004923 88 NLSIRELKQLA---DELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--TG 156 (723)
Q Consensus 88 ~~~~~~l~~la---~~iR~~i~~~v~~-~~GH~gsslg~~el~~aL~~~~~-----~p~D~~i~s~GH~~y~~~~l--~G 156 (723)
+++.+++.++- ..+|.+--++..+ .+|-..+..|..-+.+++...++ .++|.+ +...|+...+.+. .|
T Consensus 359 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v-~gm~hRg~~~~La~~~G 437 (1113)
T 2xt6_A 359 KPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVV-IAMPHRGRLNVLANIVG 437 (1113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEE-EECCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEE-EeccccchHHHHHHHhC
Confidence 46666655443 3344443333332 23334444666666666554443 466754 4357999888887 67
Q ss_pred C--hhHhHHHHhcCCCCCCC---CCCCCCc-------------------CccCCcccchhhHHHHHHHHHhhhcC-----
Q 004923 157 R--RDKMHTMRQTDGLSGFT---KRSESEY-------------------DCFGTGHSSTSISAGLGMAVGRDLKG----- 207 (723)
Q Consensus 157 ~--~~~l~~~r~~~gl~g~~---~~~e~~~-------------------~~~g~G~~G~~ls~AlG~A~A~~~~g----- 207 (723)
. ++.|..|. |...|.. .++-+-| ....+||+|+++|.|+|+|+|.++++
T Consensus 438 ~~~~~i~ae~~--G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~ 515 (1113)
T 2xt6_A 438 KPYSQIFSEFE--GNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 515 (1113)
T ss_dssp CCHHHHSTTC---------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTT
T ss_pred CCHHHHHHHhc--CCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCc
Confidence 4 34444441 1111110 0100000 11246899999999999999999876
Q ss_pred -----CCCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcCh
Q 004923 208 -----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (723)
Q Consensus 208 -----~~~~vv~viGDGa~-~~G~~~EAln~A~~~~~n---li~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~ 278 (723)
.+..+||++|||++ ++|.+|||||+|+.|++| +|+||+||++ ++.|...+. ++
T Consensus 516 ~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~-gist~~~~~---------------~s-- 577 (1113)
T 2xt6_A 516 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDS---------------RS-- 577 (1113)
T ss_dssp SSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHH---------------CS--
T ss_pred cccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCc-ccccCcccc---------------cc--
Confidence 56889999999995 899999999999999987 9999999973 432211000 00
Q ss_pred hhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhh--cCCCCcE
Q 004923 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPV 356 (723)
Q Consensus 279 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~--~~~~~P~ 356 (723)
..+...++++|||+++ .|||||++++..++++|.+ ...++|+
T Consensus 578 -----------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pv 621 (1113)
T 2xt6_A 578 -----------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDV 621 (1113)
T ss_dssp -----------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred -----------------------------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0112245899999988 7899999999999887753 1247999
Q ss_pred EEEEEeccCCCcchhhhcc-------cccC--Cccc------------c--------------------------cC-c-
Q 004923 357 LIHVVTEKGRGYPYAEKAA-------DKYH--GVAK------------F--------------------------DP-A- 387 (723)
Q Consensus 357 ~I~v~T~kg~G~~~~e~~~-------~~~H--~~~~------------f--------------------------d~-~- 387 (723)
+|+++|++++|++..+... ..|+ .-+. + .+ .
T Consensus 622 lIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~ 701 (1113)
T 2xt6_A 622 VIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI 701 (1113)
T ss_dssp EEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999997654210 0111 1010 0 00 0
Q ss_pred -----------------ccc-------------cccCc----ch-hhHH--HH------HHHHHH------HHHHhcCCC
Q 004923 388 -----------------TGK-------------QFKSS----AR-TQSY--TT------YFAEAL------IAEAEVDKD 418 (723)
Q Consensus 388 -----------------~g~-------------~~~~~----~~-~~~~--~~------~~~~aL------~~~~~~d~~ 418 (723)
|+. ..+.. .+ .+.+ +. ++..++ ..+++++++
T Consensus 702 ~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~ 781 (1113)
T 2xt6_A 702 EPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKL 781 (1113)
T ss_dssp ---------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 000 00000 00 0001 10 111223 334899999
Q ss_pred EEEEeccCCCCc------------------Chhhh------hh-hCCCceeeccccHHHHHHHHHHHHhcCC--eeEEe-
Q 004923 419 VVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEGL--KPFCA- 470 (723)
Q Consensus 419 iv~i~aD~~gs~------------------~l~~f------~~-~~p~R~id~GIaE~~~v~~AaGlA~~G~--~p~~~- 470 (723)
|+++++|++.++ .+..| ++ .+|+|++|+||+|++++|+|+|+|+.|. +|+++
T Consensus 782 V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Ea 861 (1113)
T 2xt6_A 782 VRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEA 861 (1113)
T ss_dssp EEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 999999998764 36788 65 7899999999999999999999999995 55555
Q ss_pred ehhHHHHHH---HHHHHHHh---hcCCCCEEEEeeCCCCCCCCCCCCCc--hhhHhhhhcCCCcEEEccCCHHHHHHHHH
Q 004923 471 IYSSFMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (723)
Q Consensus 471 t~s~Fl~ra---~dqi~~~~---a~~~lpv~~v~~~~G~~G~dG~tH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 542 (723)
+|++|++++ +||+++++ ..+++||+++++++| .| +||+||+ .+++..++++|||+|++|+|+.|++++++
T Consensus 862 qf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr 939 (1113)
T 2xt6_A 862 QFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLR 939 (1113)
T ss_dssp SSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHH
T ss_pred EEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHH
Confidence 599999777 99999887 367999999999877 67 9999999 56655559999999999999999999999
Q ss_pred HHHHhC-CCCEEEEecCCCCcc-ccCCCC----CCCCCcccCceEE---eeeCCcE--EEEEecchHHHHHHHHHHHHhC
Q 004923 543 TAAAID-DRPSCFRYPRGNGIG-VELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLESN 611 (723)
Q Consensus 543 ~A~~~~-~~P~~ir~~r~~~~~-~~~p~~----~~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~al~Aa~~L~~~ 611 (723)
+++..+ ++|++|++||..+.. ..+++. ...+..++|++.+ +++|+|| +|||+|.+ +.+++|++ +++
T Consensus 940 ~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~ 1016 (1113)
T 2xt6_A 940 RHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 1016 (1113)
T ss_dssp HHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhC
Confidence 988753 489999999874311 111110 0012236888887 7899999 99999998 77777766 567
Q ss_pred C-CceEEeecCccccccHHHHHHHhcCCCE---EEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCcccc-CC
Q 004923 612 G-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HG 685 (723)
Q Consensus 612 G-i~v~VId~~~ikP~d~~~i~~~~~~~~~---vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~-~g 685 (723)
| ++++|||+++|+|||.++|.+++++++. +|++||+. .||+|++|+..+.+. +...+.+++++|.+|.+.+ +|
T Consensus 1017 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~~g 1095 (1113)
T 2xt6_A 1017 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSG 1095 (1113)
T ss_dssp TCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSSCS
T ss_pred CCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCCCC
Confidence 8 9999999999999999999999999876 88888876 799999999999873 2111357899999999998 45
Q ss_pred CHH
Q 004923 686 SPA 688 (723)
Q Consensus 686 ~~~ 688 (723)
...
T Consensus 1096 ~~~ 1098 (1113)
T 2xt6_A 1096 SSK 1098 (1113)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 20
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=4.5e-55 Score=470.99 Aligned_cols=304 Identities=21% Similarity=0.272 Sum_probs=273.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc----ChhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-eh
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 472 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t~ 472 (723)
.+|+++|+++|.+++++||+++++++|++.+. .+..|+++| |+||+|+||+|++|+++|+|+|++|+|||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 47899999999999999999999999997533 347899999 9999999999999999999999999999998 69
Q ss_pred hHHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 473 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~--------~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
++|++|++|||++++++ +++|++++.++ |..|.+|++|++ +|.++++++|||+|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 557788889988 677999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCcc--ccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCc
Q 004923 545 AAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 622 (723)
++ +++|++|++|+..... ..+|. +.+.+++||++++++|+|++||++|++++.|++|++.|+++|++++|||+++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 87 7899999999865321 22332 2356789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHH
Q 004923 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 701 (723)
Q Consensus 623 ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I 701 (723)
++|||++.+.+++++++.+|++|++. .|||+++|++++.++++.....++++++++|.|+++|+ +++++|+|+++|
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I 314 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDV 314 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHH
Confidence 99999999999998888899999996 79999999999988765333568899999999999987 899999999999
Q ss_pred HHHHHHHHh
Q 004923 702 AATVFNILG 710 (723)
Q Consensus 702 ~~~i~~ll~ 710 (723)
+++|+++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1w85_B 315 IETAKKVMN 323 (324)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998874
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=4e-55 Score=473.66 Aligned_cols=306 Identities=20% Similarity=0.276 Sum_probs=274.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEeccCCC--C-c-ChhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 004923 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGG--G-T-GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 471 (723)
Q Consensus 398 ~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~g--s-~-~l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t 471 (723)
+.+|+++|+++|.+++++|++|+++++|++. + + .++.|+++| |+||+|+||+|++|+++|+|+|++|++||++ +
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~ 93 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 93 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999999983 3 2 368899999 9999999999999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHHHhh--------cCCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHH
Q 004923 472 YSSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (723)
Q Consensus 472 ~s~Fl~ra~dqi~~~~a--------~~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 543 (723)
|++|++|++|||+++++ ++++||++++++ |.+|.||+||++..| ++++++|||+|++|+|++|+++++++
T Consensus 94 f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 94 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999998 399999999997 678899999977778 89999999999999999999999999
Q ss_pred HHHhCCCCEEEEecCCCCc-cccC----CCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEe
Q 004923 544 AAAIDDRPSCFRYPRGNGI-GVEL----PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 618 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~~~~-~~~~----p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VI 618 (723)
|++ .++|++||++|+... ...+ ++ ..+.+++|+++++++|.|++||++|+++..|++|++.|+++|++++||
T Consensus 172 a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 172 AIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 987 589999999976311 1112 22 235678999999999999999999999999999999999999999999
Q ss_pred ecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHH-cCCCCCCcceEEeecCCccccCCCHHHHHHHcCC
Q 004923 619 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQ-DGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 696 (723)
Q Consensus 619 d~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~-~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl 696 (723)
|+++++|||.+.+++++++++.+|++|++. .||||++|++++.+ +++...+.+++++|++|.|+++|+ ++++++|+
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~ 326 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIP 326 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSC
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCc
Confidence 999999999999999998888899999998 69999999999998 775333578999999999999986 68899999
Q ss_pred CHHHHHHHHHHHHh
Q 004923 697 TPSHIAATVFNILG 710 (723)
Q Consensus 697 ~~e~I~~~i~~ll~ 710 (723)
|+++|+++|+++++
T Consensus 327 ~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 327 QVKDIIFAIKKTLN 340 (341)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998874
No 22
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=3.6e-55 Score=474.71 Aligned_cols=318 Identities=17% Similarity=0.226 Sum_probs=272.7
Q ss_pred ccCcccccccCcchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCC-Cc--ChhhhhhhC-CCceeeccccHHHHHHHHHH
Q 004923 384 FDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGG-GT--GLNLFLRRF-PTRCFDVGIAEQHAVTFAAG 459 (723)
Q Consensus 384 fd~~~g~~~~~~~~~~~~~~~~~~aL~~~~~~d~~iv~i~aD~~g-s~--~l~~f~~~~-p~R~id~GIaE~~~v~~AaG 459 (723)
||+.++.+.....+..+|+++++++|.+++++|++++++++|++. ++ .+..|+++| |+||+|+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 455555433222345689999999999999999999999999973 22 457899999 99999999999999999999
Q ss_pred HHhcCCeeEEe-ehhHHHHHHHHHHHHHhhcCCC---------CEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEE
Q 004923 460 LACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQKL---------PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM 529 (723)
Q Consensus 460 lA~~G~~p~~~-t~s~Fl~ra~dqi~~~~a~~~l---------pv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~ 529 (723)
+|++|+|||++ +|++|++|++|||++++++++. ||+++++++| +.+|+|||+.+|+++++++|||+|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 7999999999999999996554 9999999877 3689999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEecCCCCcc--ccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHH
Q 004923 530 APSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASAL 607 (723)
Q Consensus 530 ~Psd~~E~~~~l~~A~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~ 607 (723)
+|+|++|+++++++|++ .++|++||+|+..... ..+|. +.+.+++|+++++++|.|++||++|++++.|++|+++
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999999987 5899999888532111 12232 2355788999999999999999999999999999999
Q ss_pred HHhC-CCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCC
Q 004923 608 LESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 685 (723)
Q Consensus 608 L~~~-Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g 685 (723)
|+++ ||+++|||+++++|||.+.+.+++++++.+|++||+. .||||++|++++.++++.....+++++|++|.|++++
T Consensus 241 L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred HHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 9998 9999999999999999999999998888899999996 7999999999998876533346789999999999876
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 686 SPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 686 ~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
+++++|+|+++|+++|+++++
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHHT
T ss_pred ----HHHHHCcCHHHHHHHHHHHhc
Confidence 899999999999999998874
No 23
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=2.1e-54 Score=465.87 Aligned_cols=303 Identities=23% Similarity=0.255 Sum_probs=272.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc----ChhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-eh
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 472 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t~ 472 (723)
.+|+++++++|.+++++|++++++++|++.+. .+..|+++| |+|++|+||+|++|+++|+|+|++|+|||++ +|
T Consensus 4 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~ 83 (324)
T 1umd_B 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQF 83 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEecc
Confidence 57999999999999999999999999997533 347899999 9999999999999999999999999999998 69
Q ss_pred hHHHHHHHHHHHHHhhc--------CCCCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 473 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~--------~~lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
++|++|++|||++++++ +++|++++.++ |..|.+|++||+ +|.++++++|||+|++|+|++|+++++++|
T Consensus 84 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 161 (324)
T 1umd_B 84 ADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 161 (324)
T ss_dssp GGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999985 556778888888 788999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCCCcc--ccCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCc
Q 004923 545 AAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (723)
Q Consensus 545 ~~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ 622 (723)
++ .++|++|++|+..... ..+|. ..+.+++||++++++|.|++||++|++++.|++|+++|+++||+++|||+++
T Consensus 162 ~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 162 IR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp HH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred Hh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 97 7899999988764321 22332 2345789999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHH
Q 004923 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 701 (723)
Q Consensus 623 ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I 701 (723)
++|||.+.+.+++++++.+|++|++. .||||++|++++.++++...+.+++++|++|.|+++| +++++|+|+++|
T Consensus 239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~I 314 (324)
T 1umd_B 239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTRI 314 (324)
T ss_dssp EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHHH
Confidence 99999999999998888999999997 7999999999998876533356889999999999998 899999999999
Q ss_pred HHHHHHHHh
Q 004923 702 AATVFNILG 710 (723)
Q Consensus 702 ~~~i~~ll~ 710 (723)
+++|+++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1umd_B 315 LNAAKRALD 323 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998874
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=1.1e-52 Score=455.14 Aligned_cols=299 Identities=22% Similarity=0.270 Sum_probs=266.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCc----ChhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-eh
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 472 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~-t~ 472 (723)
.+|+++|+++|.+++++|++++++++|++++. .+..|+++| |+||+|+||+|++|+++|+|+|++|+|||++ +|
T Consensus 5 ~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~ 84 (338)
T 1qs0_B 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQF 84 (338)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred chHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEecc
Confidence 47999999999999999999999999997533 368899999 9999999999999999999999999999997 79
Q ss_pred hHHHHHHHHHHHHHhhcCC--------CCEEEEeeCCCCCCCCCCCCCchhhHhhhhcCCCcEEEccCCHHHHHHHHHHH
Q 004923 473 SSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (723)
Q Consensus 473 s~Fl~ra~dqi~~~~a~~~--------lpv~~v~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A 544 (723)
++|++|++|||++++++++ +||+++++++| +.||+|||+.+|+++++++|||+|++|+|++|+++++++|
T Consensus 85 ~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A 162 (338)
T 1qs0_B 85 ADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS 162 (338)
T ss_dssp GGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999998655 99999998877 6899999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEec----CCCCc---cc-----------cCCCCCCCCCcccCceEEeeeCCcEEEEEecchHHHHHHHHH
Q 004923 545 AAIDDRPSCFRYP----RGNGI---GV-----------ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASA 606 (723)
Q Consensus 545 ~~~~~~P~~ir~~----r~~~~---~~-----------~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~ 606 (723)
++ .++|++|++| |+..+ .. .+|. ..+.+++|+++++++|.|++||++|++++.|++|++
T Consensus 163 ~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~ 239 (338)
T 1qs0_B 163 IE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE 239 (338)
T ss_dssp HH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHH
T ss_pred Hh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHH
Confidence 87 4899999887 43222 00 1222 234567899999999999999999999999999999
Q ss_pred HHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCC
Q 004923 607 LLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 685 (723)
Q Consensus 607 ~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g 685 (723)
+ +|++++|||+++++|||.+.+.+++++++.+|++||+. .|||+++|++++.++++.....+++++|++|.|.+++
T Consensus 240 ~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~ 316 (338)
T 1qs0_B 240 E---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA 316 (338)
T ss_dssp H---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST
T ss_pred H---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH
Confidence 7 69999999999999999999999999888999999997 7999999999998887543456889999999998876
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 686 SPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 686 ~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
+++++|+|+++|+++|++++
T Consensus 317 ----l~~~~g~~~~~I~~~i~~~l 336 (338)
T 1qs0_B 317 ----QEWAYFPGPSRVGAALKKVM 336 (338)
T ss_dssp ----THHHHSCCHHHHHHHHHHSS
T ss_pred ----HHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999998865
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=5.8e-29 Score=271.65 Aligned_cols=236 Identities=16% Similarity=0.113 Sum_probs=186.1
Q ss_pred cccCCHHHHHH---HHHHHHHHHHHHhh-hcCCCCCCc---ccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC-
Q 004923 86 MKNLSIRELKQ---LADELRADVIFNVS-KTGGHLGSS---LGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR- 157 (723)
Q Consensus 86 ~k~~~~~~l~~---la~~iR~~i~~~v~-~~~GH~gss---lg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~- 157 (723)
.++++.+++.+ .+.++|.+..+++. ..+||+|++ .|...++++++..++..+|+||+ +|+.|++++++|+
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 35677776665 68999999999997 578998766 45566777777788766799998 8889999999998
Q ss_pred -hhHhHHHHhc------C-CCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHH
Q 004923 158 -RDKMHTMRQT------D-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA 229 (723)
Q Consensus 158 -~~~l~~~r~~------~-gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EA 229 (723)
.+.|.+|++. | +.++|+...+ .+....+|++|+++|.|+|+|+|.++.+++++|||++|||++++|++|||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 4889999884 3 2567875432 23344789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh
Q 004923 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (723)
Q Consensus 230 ln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (723)
||+|+.+++|+++||+||+ +++.|.. . .
T Consensus 187 l~~A~~~~lpvi~vv~NN~-~gi~~~~--------~----------------------------------~--------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNF-YAISVDY--------R----------------------------------H--------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECS-EETTEEH--------H----------------------------------H---------
T ss_pred HHHHHHhCcCEEEEEecCC-eeeccCh--------h----------------------------------h---------
Confidence 9999999999999999999 4432110 0 0
Q ss_pred hcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhh--cCCCCcEEEEEEeccCCCcchhhhcccccC
Q 004923 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYAEKAADKYH 379 (723)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~--~~~~~P~~I~v~T~kg~G~~~~e~~~~~~H 379 (723)
....++...++++|||.++ .|||+|+.++.++++.+.+ ...++|++|+++|.+++|++.+. ++..++
T Consensus 215 -~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D-~~~~Yr 283 (367)
T 1umd_A 215 -QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD-DDSRYR 283 (367)
T ss_dssp -HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC-CGGGTS
T ss_pred -ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC-CccccC
Confidence 0012345667999999998 7899999999888776543 13579999999999999998763 233444
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.92 E-value=5.2e-24 Score=232.00 Aligned_cols=224 Identities=21% Similarity=0.256 Sum_probs=168.9
Q ss_pred cccCCHHHHHHHHHHH---HHHHHHHhh--h--cCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCCh
Q 004923 86 MKNLSIRELKQLADEL---RADVIFNVS--K--TGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRR 158 (723)
Q Consensus 86 ~k~~~~~~l~~la~~i---R~~i~~~v~--~--~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~~ 158 (723)
+.+++.+++.++-+.+ |..--.+.. + .-|+.+++.|...+.+++...++ |+|.++. .|+.+++.+..|..
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~G~~ 114 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWHGLP 114 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhcCCC
Confidence 4567777777765433 544322221 1 22788899999999999988884 7898766 49999999999973
Q ss_pred --hHhHHHHhc--CCCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhh
Q 004923 159 --DKMHTMRQT--DGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG 234 (723)
Q Consensus 159 --~~l~~~r~~--~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~ 234 (723)
..|..|.-. |+ +.|+ ..+...+.|++|+++|+|+|+|+|.++++.+++|||++|||++++|++||+||+|+
T Consensus 115 ~~~~~~el~G~~~G~-~~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~ 189 (368)
T 1w85_A 115 LYQAFLFSRGHFHGN-QIPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAG 189 (368)
T ss_dssp HHHHHHHHHTCGGGG-CCCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-CCCc----ccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHH
Confidence 445555321 22 2222 12334478999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccC
Q 004923 235 YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS 314 (723)
Q Consensus 235 ~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~ 314 (723)
.+++|+++||+||++ ++.+.... ..-.
T Consensus 190 ~~~lpvi~vv~NN~~-gi~~~~~~----------------------------------------------------~~~~ 216 (368)
T 1w85_A 190 AFKAPAIFVVQNNRF-AISTPVEK----------------------------------------------------QTVA 216 (368)
T ss_dssp HTTCCEEEEEEECSE-ETTEEGGG----------------------------------------------------TCSC
T ss_pred HHCcCEEEEEEcCCc-cceecccc----------------------------------------------------ccCC
Confidence 999999999999983 43221100 0001
Q ss_pred CCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcc-hh
Q 004923 315 GSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYP-YA 371 (723)
Q Consensus 315 ~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~~I~v~T~kg~G~~-~~ 371 (723)
++...++++|||.++ .|||||++++..+++++.+. ..++|++|++.|++..|++ ..
T Consensus 217 ~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~ 275 (368)
T 1w85_A 217 KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275 (368)
T ss_dssp SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSC
T ss_pred CCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCC
Confidence 344566999999998 78999999999999887641 3579999999999999997 53
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.92 E-value=4.5e-24 Score=231.92 Aligned_cols=229 Identities=20% Similarity=0.221 Sum_probs=168.2
Q ss_pred CccccccCCHHHHHHHHHH---HHHHHHHHhh-----hcCCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHH
Q 004923 82 YPIHMKNLSIRELKQLADE---LRADVIFNVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI 153 (723)
Q Consensus 82 ~~~~~k~~~~~~l~~la~~---iR~~i~~~v~-----~~~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~ 153 (723)
.|.+..+++.++|.++-+. +|..-..+.. +..|+.+.+.|...+.+++...++ |.|+++. +|+.+++.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 4566667887877766533 3444333332 235888889999999999988884 7898887 799999999
Q ss_pred HcCC--hhHhHHHHhcCCCCCCCCCC-CCC----cCcc-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccc
Q 004923 154 LTGR--RDKMHTMRQTDGLSGFTKRS-ESE----YDCF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQ 225 (723)
Q Consensus 154 l~G~--~~~l~~~r~~~gl~g~~~~~-e~~----~~~~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~ 225 (723)
..|. .+.|..|. |...|.+++. .+. .+.+ +.|++|+++|+|+|+|+|.++++.++.|||++|||++++|+
T Consensus 101 ~~G~~~~~i~~e~~--g~~~g~~~g~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~ 178 (365)
T 2ozl_A 101 TRGLSVREILAELT--GRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQ 178 (365)
T ss_dssp HTTCCHHHHHHHHT--TCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHH
T ss_pred hcCCCHHHHHHHHc--CCCCCCCCCCCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccH
Confidence 9997 35555552 2222222111 011 1223 45999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHH
Q 004923 226 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (723)
Q Consensus 226 ~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~ 305 (723)
+||+||+|+.|++|+++||+||++ ++.|.. . +
T Consensus 179 ~~Ealn~A~~~~lpvi~vv~NN~~-g~~t~~--------~-------~-------------------------------- 210 (365)
T 2ozl_A 179 IFEAYNMAALWKLPCIFICENNRY-GMGTSV--------E-------R-------------------------------- 210 (365)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSE-ETTEEH--------H-------H--------------------------------
T ss_pred HHHHHHHHHHHCcCEEEEEECCCc-ccCCCc--------c-------c--------------------------------
Confidence 999999999999999999999973 331110 0 0
Q ss_pred HHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhh--cCCCCcEEEEEEeccCCCcchh
Q 004923 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~--~~~~~P~~I~v~T~kg~G~~~~ 371 (723)
....+++.+ +++||.++ .|||||++++..++++|.+ ...++|++|++.|++..|++..
T Consensus 211 -----~~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 211 -----AAASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp -----HCSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred -----ccCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 000122222 57899987 7899999999999887753 1368999999999999998754
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.91 E-value=3.1e-23 Score=228.27 Aligned_cols=228 Identities=16% Similarity=0.119 Sum_probs=165.4
Q ss_pred ccCCHHHHHHHH---HHHHHHHHHHhhh-cC---CCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--
Q 004923 87 KNLSIRELKQLA---DELRADVIFNVSK-TG---GHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (723)
Q Consensus 87 k~~~~~~l~~la---~~iR~~i~~~v~~-~~---GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~-- 157 (723)
.+++.+++.++- ..+|..--.+... .. ++..++.|..-+.+++-..+ .++|.++. .|+.+++.+..|.
T Consensus 50 ~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 50 PHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMYRDYPL 126 (400)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHHcCCCH
Confidence 456666655542 3334433333331 22 34568888888877776666 57898775 7999999999997
Q ss_pred hhHhHHHHhc------C-CCCCCCCCCCCCcCccCCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHH
Q 004923 158 RDKMHTMRQT------D-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (723)
Q Consensus 158 ~~~l~~~r~~------~-gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAl 230 (723)
.+.|.+|+.. | +.++|+...+.. ...++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+|
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~-~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal 205 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKERH-FVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 205 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTTT-BCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCcccccC-ccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHH
Confidence 4667888764 2 355666543222 3346899999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhh
Q 004923 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (723)
Q Consensus 231 n~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (723)
|+|+.+++|+|+||+||+ +++.+.....
T Consensus 206 ~~A~~~~lpvi~vv~NN~-~~i~~~~~~~--------------------------------------------------- 233 (400)
T 2bfd_A 206 NFAATLECPIIFFCRNNG-YAISTPTSEQ--------------------------------------------------- 233 (400)
T ss_dssp HHHHHTTCCEEEEEEECS-EETTEEGGGT---------------------------------------------------
T ss_pred HHHHHHCcCEEEEEECCc-eeeeeccccc---------------------------------------------------
Confidence 999999999999999997 3432211100
Q ss_pred cccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 004923 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~e 372 (723)
+..++...++++|||.++ .|||||+++|.++++++.+. ..++|++|+++|++-.|+++.+
T Consensus 234 -~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D 295 (400)
T 2bfd_A 234 -YRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSD 295 (400)
T ss_dssp -CSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC--
T ss_pred -CCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCC
Confidence 001234456999999988 89999999999999877641 1479999999998877776543
No 29
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.90 E-value=1.6e-24 Score=238.71 Aligned_cols=284 Identities=16% Similarity=0.133 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcChhhhhh---hCCCceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHH
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLR---RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM 476 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~---~~p~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl 476 (723)
+-.+++...+.. ...+++..-+-...+.-+..|.+ ++..+++.+. +|++++++|.|+|++|.||+++|.++++
T Consensus 24 ~GneAva~~~~~---ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G~ 99 (395)
T 1yd7_A 24 QGDEAIARAAIL---AGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPGF 99 (395)
T ss_dssp EHHHHHHHHHHH---HTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTHH
T ss_pred EHHHHHHHHHHH---cCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchHH
Confidence 445666666554 34556665444332222244443 4567889988 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeeC-CCC-CC-CCCCCCCchhhHhhhhcCC--CcEEEccCCHHHHHHHHHHHHH---hC
Q 004923 477 QRAYDQVVHDVDLQKLPVRFAMDR-AGL-VG-ADGPTHCGSFDVTFMACLP--NMVVMAPSDEAELFHMVATAAA---ID 548 (723)
Q Consensus 477 ~ra~dqi~~~~a~~~lpv~~v~~~-~G~-~G-~dG~tH~~~~d~a~~~~iP--~l~V~~Psd~~E~~~~l~~A~~---~~ 548 (723)
.+++||+.+ ++..++|++++... +|. .| ...+.|+...+. .+..+| ++.+++|++++|+.+++..|++ +.
T Consensus 100 ~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 100 SLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999865 57889999998744 332 22 112223344443 334545 8999999999999999999995 35
Q ss_pred CCCEEEEecCCC---CccccCCCC-----------------CCCCCc--cc--------Cc-------------------
Q 004923 549 DRPSCFRYPRGN---GIGVELPPG-----------------NKGIPL--EV--------GK------------------- 579 (723)
Q Consensus 549 ~~P~~ir~~r~~---~~~~~~p~~-----------------~~~~~~--~~--------gk------------------- 579 (723)
+.|++++++... ...+++|+. +..+.. +. +.
T Consensus 178 ~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~ 257 (395)
T 1yd7_A 178 RTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRT 257 (395)
T ss_dssp TSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-----------------------------------------------
T ss_pred CCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCccc
Confidence 689999987421 000111100 000111 00 00
Q ss_pred ---------------------------eEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHH
Q 004923 580 ---------------------------GRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIR 632 (723)
Q Consensus 580 ---------------------------~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~ 632 (723)
-++..+|+|++||++|+++..|++|++.|+++|++++||++++++|||.+.|.
T Consensus 258 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~ 337 (395)
T 1yd7_A 258 VDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIE 337 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHH
Confidence 01223678999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHH
Q 004923 633 SLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 709 (723)
Q Consensus 633 ~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll 709 (723)
+++++++.|+|+|++. ||++++|...+... .++..++-.+ | .-+++++|.+.+++++
T Consensus 338 ~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 338 RIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 9999999999999997 99999998876541 1222222211 1 1168888988887754
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.90 E-value=2.5e-22 Score=221.01 Aligned_cols=229 Identities=19% Similarity=0.133 Sum_probs=162.7
Q ss_pred ccCCHHHHHHHH---HHHHHHHHHHhh--hc--CCCCCCcccHHHHHHHHhhccCCCCcEEEeCCCchHHHHHHHcCC--
Q 004923 87 KNLSIRELKQLA---DELRADVIFNVS--KT--GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (723)
Q Consensus 87 k~~~~~~l~~la---~~iR~~i~~~v~--~~--~GH~gsslg~~el~~aL~~~~~~p~D~~i~s~GH~~y~~~~l~G~-- 157 (723)
.+++.+++.++- ..+|.+--++.. ++ -++..++.|..-+.+++-..+ .++|+++. .|+.+++.+..|.
T Consensus 69 ~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~~ 145 (407)
T 1qs0_A 69 EDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVSL 145 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCCH
Confidence 356666655543 234443333332 11 245558899988888876666 57898884 8999888888886
Q ss_pred hhHhHHHHhc--CCCCCCCCC---CCCCcCcc-CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHH
Q 004923 158 RDKMHTMRQT--DGLSGFTKR---SESEYDCF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMN 231 (723)
Q Consensus 158 ~~~l~~~r~~--~gl~g~~~~---~e~~~~~~-g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln 231 (723)
.+.|..|.-. +...|+-.. .......+ +.|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+||
T Consensus 146 ~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 225 (407)
T 1qs0_A 146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALT 225 (407)
T ss_dssp HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHH
Confidence 3555555321 111121110 00112223 58999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhc
Q 004923 232 NAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 311 (723)
Q Consensus 232 ~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~ 311 (723)
+|+.|++|+++||+||++ ++.+... ..
T Consensus 226 ~A~~~~lpvi~Vv~NN~~-gi~~~~~--------~~-------------------------------------------- 252 (407)
T 1qs0_A 226 FAHVYRAPVILNVVNNQW-AISTFQA--------IA-------------------------------------------- 252 (407)
T ss_dssp HHHHHTCCEEEEEEECSE-ETTEEGG--------GG--------------------------------------------
T ss_pred HHHHHCcCEEEEEECCCc-ceeeccc--------cc--------------------------------------------
Confidence 999999999999999973 3322100 00
Q ss_pred c-cCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 004923 312 M-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (723)
Q Consensus 312 ~-~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~--~~~~P~~I~v~T~kg~G~~~~e 372 (723)
. ..++...++++|||.++ .|||+|++++..+++++.+. ..++|++|+++|+|++|++.++
T Consensus 253 ~~~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp TTTTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred cCCCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 0 01233455899999988 78999999999998877532 3579999999999999999876
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.75 E-value=1.1e-16 Score=197.39 Aligned_cols=253 Identities=15% Similarity=0.099 Sum_probs=179.0
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCCCchhhHh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFDVT 518 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~-~G~dG~tH~~~~d~a 518 (723)
.+.++...+|.++++++.|++++|.|++++|.+..+..+.+.+. .++..++|+|++. +++|. .| -.++.+..|..
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~g--lsi~~~hsd~~ 130 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHA--LSIFGDHQDIY 130 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSS--BCCSCCSHHHH
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCC--CcCCCchhhHH
Confidence 37999999999999999999999999999999888888888875 4455789988887 55553 12 13344444543
Q ss_pred hhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCCCC----ccccCCCC--------------------CC
Q 004923 519 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNG----IGVELPPG--------------------NK 571 (723)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~~~----~~~~~p~~--------------------~~ 571 (723)
....+|+.|++|++++|++++...|++ +.+.|++++++.... .++++|+. ..
T Consensus 131 -~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p 209 (1231)
T 2c42_A 131 -AARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNP 209 (1231)
T ss_dssp -TTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCT
T ss_pred -HHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCC
Confidence 455699999999999999999999865 367899999876321 12222210 00
Q ss_pred CCCcccCc------------------------------------------e-EEeeeCCcEEEEEecchHHHHHHHHHHH
Q 004923 572 GIPLEVGK------------------------------------------G-RILIEGERVALLGYGTAVQSCLAASALL 608 (723)
Q Consensus 572 ~~~~~~gk------------------------------------------~-~vl~eG~dv~Iva~Gs~v~~al~Aa~~L 608 (723)
..+++.|. . ++-.+++|++||+||++...+++|++.|
T Consensus 210 ~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L 289 (1231)
T 2c42_A 210 EHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHL 289 (1231)
T ss_dssp TSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHH
T ss_pred CCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 01111111 1 2234678999999999999999999999
Q ss_pred HhCCCceEEeecCccccccHHHHHHHh-cCCCEEEEEcCCCCCC-----hHHHHHHHHHHcCCCCCCcceEEeecCCccc
Q 004923 609 ESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGG-----FGSHVVQFLAQDGLLDGTVKWRPLVLPDRYI 682 (723)
Q Consensus 609 ~~~Gi~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~gG-----~g~~v~~~l~~~g~~~~~~~~~~~~~~d~~~ 682 (723)
+++|++|+||++++++|||.+.|.+++ ++.+.|+|+|++..+| +...|...+.... ...++...+ +|+
T Consensus 290 ~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~g 363 (1231)
T 2c42_A 290 AAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYG 363 (1231)
T ss_dssp HTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECC
T ss_pred HhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EEC
Confidence 999999999999999999999999988 6779999999985333 3345544443321 011111111 222
Q ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHhc
Q 004923 683 DHGSPADQLAQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 683 ~~g~~~el~~~~gl~~e~I~~~i~~ll~~ 711 (723)
..|. -++++.|.+.+.++...
T Consensus 364 l~g~--------~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 364 LGSK--------EFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp GGGC--------CCCHHHHHHHHHHHHTT
T ss_pred CCCC--------CCCHHHHHHHHHHhhcC
Confidence 1121 27899999988877543
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.60 E-value=1.9e-15 Score=175.48 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=132.3
Q ss_pred CcccHHHHHHHHhhccCCCCcEEEeCCC-chHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHH
Q 004923 118 SSLGVIELTVALHYVFNAPKDRILWDVG-HQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAG 196 (723)
Q Consensus 118 sslg~~el~~aL~~~~~~p~D~~i~s~G-H~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~A 196 (723)
..+....++-.|...+ .++|.|++|+| |+.+++.++..++. . ......+.|++|+++|+|
T Consensus 369 ~~l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~--------~----------~~~~~~~~g~~G~~l~~A 429 (603)
T 4feg_A 369 GPLQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS--------N----------RHITSNLFATMGVGIPGA 429 (603)
T ss_dssp SBCCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT--------C----------EEECCCSSCCTTCHHHHH
T ss_pred CCcCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC--------C----------ceecCcccccccchhHHH
Confidence 3466666666665544 56889999999 66677766543211 0 011122568999999999
Q ss_pred HHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhc
Q 004923 197 LGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQS 276 (723)
Q Consensus 197 lG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~ 276 (723)
+|++++.+ +++|||++|||+++++ +++|++|+.+++|+++||.||+.+.+ +. ...+...
T Consensus 430 ~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~--------------~~-~~~~~~~ 488 (603)
T 4feg_A 430 IAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF--------------IK-DEQEDTN 488 (603)
T ss_dssp HHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH--------------HH-HHHHHHC
T ss_pred hhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH--------------HH-HHHHHhc
Confidence 99999875 7899999999999865 78899999999999988888873221 10 0000000
Q ss_pred ChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhh--hcCCCC
Q 004923 277 NRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK--NTKTTG 354 (723)
Q Consensus 277 ~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~--~~~~~~ 354 (723)
.+ +. +...+-.+++..++++||+.++.+ ++.++|.+++++++ + .++
T Consensus 489 ~~-------------~~--------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~~g 536 (603)
T 4feg_A 489 QN-------------DF--------------IGVEFNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--QHE 536 (603)
T ss_dssp SS-------------CC--------------CSSBCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--TTS
T ss_pred CC-------------Cc--------------ccCcCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--CCC
Confidence 00 00 000111245566799999999854 47889999999988 5 689
Q ss_pred cEEEEEEeccCCCcchhhhcccccCCcccccCc
Q 004923 355 PVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPA 387 (723)
Q Consensus 355 P~~I~v~T~kg~G~~~~e~~~~~~H~~~~fd~~ 387 (723)
|++||+.|.+++.+++ +...+..|+..+++++
T Consensus 537 P~lIev~~~~~~~~~~-~~~~~~~~~~~~~~~~ 568 (603)
T 4feg_A 537 PVLIDAVITGDRPLPA-EKLRLDSAMSSAADIE 568 (603)
T ss_dssp CEEEEEECCCCCCCCT-TSCCCCTTTSCHHHHH
T ss_pred cEEEEEEeCCCCCCCc-ccchhhhhhhhHHHHH
Confidence 9999999987777664 4445667776655543
No 33
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.57 E-value=1e-14 Score=133.47 Aligned_cols=106 Identities=15% Similarity=0.295 Sum_probs=87.2
Q ss_pred eCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcC
Q 004923 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDG 664 (723)
Q Consensus 585 eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g 664 (723)
+|+|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+.+++++++.++|+|++..||+++.|...+ +
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~---~ 88 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYT---G 88 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHH---C
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHc---C
Confidence 6789999999999999999999999999999999999999999999999999999999999998899999887643 1
Q ss_pred CCCCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHh
Q 004923 665 LLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 710 (723)
Q Consensus 665 ~~~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~ 710 (723)
. .++..+ -.+ .|.+ +++++|.+.++++++
T Consensus 89 ~----~~~~~i---~~~--~G~~--------~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 89 I----DIKNKI---LKY--NGRH--------MTEDEILKSAKEILN 117 (118)
T ss_dssp C----CCCCCC---CCB--TTBC--------CCHHHHHHHHHHHHH
T ss_pred C----CceeEE---eee--CCee--------CCHHHHHHHHHHHhh
Confidence 1 000111 111 1222 899999999998874
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.44 E-value=5.6e-13 Score=153.51 Aligned_cols=179 Identities=14% Similarity=0.132 Sum_probs=122.0
Q ss_pred cccHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHH
Q 004923 119 SLGVIELTVALHYVFNAPKDRILWDVGHQT-YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGL 197 (723)
Q Consensus 119 slg~~el~~aL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~Al 197 (723)
.+....++..|...+ .+++.++.|.|+.. +++.++..+. | .+.....|.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~~---------------~---~~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHV-DAGVTVVADGALTYLWLSEVMSRVK---------------P---GGFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTC-STTEEEEECSSHHHHHHHHHHTTSC---------------C---SEEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCcEEEEcCchHHHHHHHhccccC---------------C---CeEECCCCCccccChHHHHH
Confidence 466666666666555 35788889999754 5665544321 1 11223346799999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcC
Q 004923 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 277 (723)
Q Consensus 198 G~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~ 277 (723)
|+|+|.+ +++++|||++|||+++.+ +++|++|.++++|+++||.||+.+.+ . +.+++....
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~--------------~-~~~~~~~~~ 490 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGA--------------T-LHFQQLAVG 490 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHH--------------H-HHHHHHHTC
T ss_pred HHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchH--------------H-HHHHHHhcC
Confidence 9999985 458899999999999965 67899999999998877777763221 1 000000000
Q ss_pred hhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEE
Q 004923 278 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 357 (723)
Q Consensus 278 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~ 357 (723)
. .+..+ ..+-..++..++++||+.++.+ ++.++|.++++++.+ .++|++
T Consensus 491 ~------------~~~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~l 539 (563)
T 2uz1_A 491 P------------NRVTG--------------TRLENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPAC 539 (563)
T ss_dssp T------------TCCCS--------------CBCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEE
T ss_pred C------------CcccC--------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEE
Confidence 0 00000 1111245667799999999854 689999999999987 589999
Q ss_pred EEEEeccCC
Q 004923 358 IHVVTEKGR 366 (723)
Q Consensus 358 I~v~T~kg~ 366 (723)
||+.|.+..
T Consensus 540 iev~~~~~~ 548 (563)
T 2uz1_A 540 INVAVALDP 548 (563)
T ss_dssp EEEECCSCC
T ss_pred EEEEecccc
Confidence 999999543
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.40 E-value=2.1e-12 Score=148.72 Aligned_cols=175 Identities=13% Similarity=0.174 Sum_probs=119.3
Q ss_pred ccHHHHHHHHhhccCCCCcEEEeCCC-chHHHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHHH
Q 004923 120 LGVIELTVALHYVFNAPKDRILWDVG-HQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLG 198 (723)
Q Consensus 120 lg~~el~~aL~~~~~~p~D~~i~s~G-H~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~AlG 198 (723)
+....++..|...+ .+++.++.|.| |+.+...++..+ .|. ......|.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~---------------~~~---~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIV-NSDVTLTVDMGSFHIWIARYLYTF---------------RAR---QVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHC-CTTEEEEECSSHHHHHHHHTGGGC---------------CCS---EEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCcHHHHHHHHhcccC---------------CCC---eEEeCCCcccccchHHHHHH
Confidence 66677777776665 35677888999 333443322210 011 11222367999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcCh
Q 004923 199 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (723)
Q Consensus 199 ~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~ 278 (723)
+|+|.+ +++|||++|||+++. .+++|++|..+++|+++||.||+.+.+ . +.+++.....
T Consensus 432 aala~~----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~--------------~-~~~~~~~~~~ 490 (566)
T 1ozh_A 432 AWLVNP----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNM--------------V-AIQEEKKYQR 490 (566)
T ss_dssp HHHHST----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHH--------------H-HHHHHHHHSS
T ss_pred HHHhCC----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhH--------------H-HHHHHHhcCC
Confidence 999975 789999999999995 467899999999998888888863221 1 1111100000
Q ss_pred hhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEE
Q 004923 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 358 (723)
Q Consensus 279 ~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I 358 (723)
. +...+...++..++++||+.++. | ++.++|.++++++.+ .++|++|
T Consensus 491 ~----------------------------~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~li 537 (566)
T 1ozh_A 491 L----------------------------SGVEFGPMDFKAYAESFGAKGFA-V--ESAEALEPTLRAAMD--VDGPAVV 537 (566)
T ss_dssp C----------------------------CSCBCCCCCHHHHHHTTTSEEEE-C--CSGGGHHHHHHHHHH--SSSCEEE
T ss_pred C----------------------------ccCcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00112235667789999999984 5 468899999999886 5899999
Q ss_pred EEEeccCCC
Q 004923 359 HVVTEKGRG 367 (723)
Q Consensus 359 ~v~T~kg~G 367 (723)
|+.|.+...
T Consensus 538 ev~~~~~~~ 546 (566)
T 1ozh_A 538 AIPVDYRDN 546 (566)
T ss_dssp EEEBCCTTH
T ss_pred EEEeCCCcC
Confidence 999998765
No 36
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.33 E-value=9.3e-13 Score=154.54 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=98.0
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|..+++|+++||.||+.+.+
T Consensus 511 ~~G~mG~~lpaAiGaalA~p----~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~------------ 572 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAKP----ESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGM------------ 572 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHH------------
T ss_pred CcchhhchHHHHHHHHHhCC----CCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchh------------
Confidence 56899999999999999974 889999999999985 567899999999998877777763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
. +.+++......| . ...+-.+++..++++||+.++.+ ++.++|.+++
T Consensus 573 --~-~~~~~~~~~~~~-------------~--------------~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 619 (677)
T 1t9b_A 573 --V-TQWQSLFYEHRY-------------S--------------HTHQLNPDFIKLAEAMGLKGLRV---KKQEELDAKL 619 (677)
T ss_dssp --H-HHHHHHHSTTCC-------------C--------------SCCCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHH
T ss_pred --h-hhhhhhhcCCCc-------------c--------------cCcCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHH
Confidence 1 111100000000 0 00112346677899999999854 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcchh
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G~~~~ 371 (723)
+++.+ .++|++|||.|.++....++
T Consensus 620 ~~a~~--~~gp~lIev~~~~~~~~~p~ 644 (677)
T 1t9b_A 620 KEFVS--TKGPVLLEVEVDKKVPVLPM 644 (677)
T ss_dssp HHHHH--CSSCEEEEEEBCSSCCCSSB
T ss_pred HHHHH--CCCcEEEEEEecCCcccCCc
Confidence 99987 57999999999998875443
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.32 E-value=1.4e-12 Score=151.05 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=97.1
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+.+++|+++||.||+.+++
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~------------ 485 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGM------------ 485 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHH------------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchH------------
Confidence 56999999999999999975 7899999999999954 67999999999998777766653221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
. +.+++......+ ....++.+. .......++..++++||+.++. | ++.++|.+++
T Consensus 486 --~-~~~~~~~~~~~~---------~~~~~~~p~----------~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 540 (590)
T 1ybh_A 486 --V-MQWEDRFYKANR---------AHTFLGDPA----------QEDEIFPNMLLFAAACGIPAAR-V--TKKADLREAI 540 (590)
T ss_dssp --H-HHHHHHHSTTCC---------CSCBCSCGG----------GTTSCSSCHHHHHHHTTCCEEE-E--CBHHHHHHHH
T ss_pred --H-HHHHHHhcCCcc---------ccccccccc----------cccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHH
Confidence 1 111110000000 000000000 0000023566779999999984 4 5799999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcch
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRGYPY 370 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G~~~ 370 (723)
+++.+ .++|++||+.|.++....+
T Consensus 541 ~~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 541 QTMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHHh--CCCCEEEEEEecCCcccCC
Confidence 99987 5799999999999987644
No 38
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.30 E-value=3.6e-12 Score=147.01 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
|.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+.+++|+++||.||+.+++
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~------------ 495 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGL------------ 495 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchh------------
Confidence 67999999999999999975 7899999999999964 68999999999998777777763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHh--hcccCCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA--RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~--~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
. +.+++..... .+. ..+-.+++..++++|||.++. | ++.++|.+
T Consensus 496 --~-~~~~~~~~~~----------------------------~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~ 541 (573)
T 2iht_A 496 --I-ELYQNIGHHR----------------------------SHDPAVKFGGVDFVALAEANGVDATR-A--TNREELLA 541 (573)
T ss_dssp --H-HHHHHHHHSS----------------------------CCGGGTBCCCCCHHHHHHHTTCEEEE-C--CSHHHHHH
T ss_pred --h-HHHHHHhcCC----------------------------CcCccccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHH
Confidence 1 1111100000 000 112235667789999999985 4 58899999
Q ss_pred HHHHhhhcCCCCcEEEEEEecc
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~k 364 (723)
+++++++ .++|++||+.|.+
T Consensus 542 al~~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 542 ALRKGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHT--SSSCEEEEEEBCC
T ss_pred HHHHHHh--CCCCEEEEEECCC
Confidence 9999986 5899999999998
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.29 E-value=4.8e-12 Score=144.53 Aligned_cols=127 Identities=23% Similarity=0.317 Sum_probs=92.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
| |++|+++|+|+|+|+|.+ +++|||++|||+++.+ +|+|++|..+++|+++||.||+.+++
T Consensus 400 g-g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~------------ 460 (528)
T 1q6z_A 400 A-GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA------------ 460 (528)
T ss_dssp T-CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred C-ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchH------------
Confidence 5 999999999999999975 7889999999999966 79999999999998888877763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
. +.+++....+.| . ..++-..++..++++||+.++ .|| +.++|.+++
T Consensus 461 --~-~~~~~~~~~~~~-------------~--------------~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al 507 (528)
T 1q6z_A 461 --L-RWFAGVLEAENV-------------P--------------GLDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSL 507 (528)
T ss_dssp --H-HHHHHHHTCCSC-------------C--------------SCBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHH
T ss_pred --h-HHHHHHhcCCCc-------------c--------------cCCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHH
Confidence 1 111110000000 0 011112456677999999998 555 678999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKG 365 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg 365 (723)
+++++ .++|++||+.|.+.
T Consensus 508 ~~a~~--~~gp~liev~~~~~ 526 (528)
T 1q6z_A 508 QEALS--AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHHHT--CSSCEEEEEEBCC-
T ss_pred HHHHH--CCCcEEEEEEecCC
Confidence 99986 58999999999863
No 40
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.28 E-value=2.4e-12 Score=148.25 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=96.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+|+|.+.++++++|||++|||++++ .+++|++|..+++|+++||.||+.+.+.... .+...
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~-- 485 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLI-HGPKA-- 485 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC--
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhh-hCCCC--
Confidence 679999999999999999998888899999999999985 5788999999999988877777532210000 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCe---EEEecCCCCHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY---YIGPVDGHNVDDLV 341 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~---~~~~vDGhd~~~l~ 341 (723)
. ..++-.+++..++++||+. ++ .| ++.++|.
T Consensus 486 ------------------------------------------~-~~~~~~~d~~~~a~a~G~~~~~~~-~v--~~~~el~ 519 (563)
T 2vk8_A 486 ------------------------------------------Q-YNEIQGWDHLSLLPTFGAKDYETH-RV--ATTGEWD 519 (563)
T ss_dssp ------------------------------------------G-GGCCCCCCGGGHHHHTTCSSEEEE-EE--CBHHHHH
T ss_pred ------------------------------------------C-cccCCCCCHHHHHHHhCCCCCcEE-Ee--cCHHHHH
Confidence 0 0111235677889999998 76 44 4689999
Q ss_pred HHHH-HhhhcCCCCcEEEEEEeccCCC
Q 004923 342 AILE-EVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 342 ~al~-~a~~~~~~~P~~I~v~T~kg~G 367 (723)
++++ ++.+. .++|++||++|.+..-
T Consensus 520 ~al~~~a~~~-~~~p~liev~~~~~~~ 545 (563)
T 2vk8_A 520 KLTQDKSFND-NSKIRMIEVMLPVFDA 545 (563)
T ss_dssp HHHTCTTTTS-CSSEEEEEEECCTTCC
T ss_pred HHHHHHHHhC-CCCcEEEEEEeCcccc
Confidence 9998 77652 3479999999987543
No 41
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.28 E-value=3.5e-12 Score=146.43 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+-+..+
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~------- 470 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSM--LMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEM------- 470 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHH-------
Confidence 66899999999999999975 789999999999984 57889999999999877777775322100000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.. .........+-.+++..++++||+.++.+ ++.++|.+++
T Consensus 471 -----------~~-------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 511 (549)
T 3eya_A 471 -----------KA-------------------------GGYLTDGTELHDTNFARIAEACGITGIRV---EKASEVDEAL 511 (549)
T ss_dssp --------------------------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHH
T ss_pred -----------Hh-------------------------cCCCCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHH
Confidence 00 00001112222356677899999999855 6889999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCc
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGRGY 368 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~G~ 368 (723)
+++++ .++|++|||.|.+....
T Consensus 512 ~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 512 QRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp HHHHH--SSSCEEEEEEBCCCCSC
T ss_pred HHHHh--CCCCEEEEEEecccccc
Confidence 99987 58999999999986654
No 42
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.28 E-value=2.9e-12 Score=148.35 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=118.6
Q ss_pred cccHHHHHHHHhhccCCCCcEEEeCCCchH-HHHHHHcCChhHhHHHHhcCCCCCCCCCCCCCcCccCCcccchhhHHHH
Q 004923 119 SLGVIELTVALHYVFNAPKDRILWDVGHQT-YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGL 197 (723)
Q Consensus 119 slg~~el~~aL~~~~~~p~D~~i~s~GH~~-y~~~~l~G~~~~l~~~r~~~gl~g~~~~~e~~~~~~g~G~~G~~ls~Al 197 (723)
.+....++..|...+ .+++.++.+.|-.. +...++. ++.+. ......|.|++|+++|+|+
T Consensus 374 ~l~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~-----------------~~~~~-~~~~~~g~g~mG~~l~~Ai 434 (589)
T 2pgn_A 374 PASMFRAMAEVRKVQ-RPEDIIVTDIGNHTLPMFGGAI-----------------LQRPR-RLVTSMAEGILGCGFPMAL 434 (589)
T ss_dssp SCCHHHHHHHHHHTC-CTTCEEEECSSTTHHHHHHHCC-----------------CSSTT-CEESCTTTCCTTCHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCCEEEEcCchHHHHHHHhcc-----------------cCCCC-cEECCCCcchhhhHHHHHH
Confidence 355566665665444 34677778888543 2222111 01110 1122236799999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcC
Q 004923 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 277 (723)
Q Consensus 198 G~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~ 277 (723)
|+|+|.+ +++|||++|||+++.+ +++|++|..+++|+++||.||+.+.+ . +.++.....
T Consensus 435 Gaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~--------------~-~~~~~~~~~ 493 (589)
T 2pgn_A 435 GAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGA--------------N-WTLMNHQFG 493 (589)
T ss_dssp HHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH--------------H-HHHHHHHHS
T ss_pred HHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCccc--------------c-hHHHHhhcC
Confidence 9999975 7899999999999955 69999999999998888877763221 1 111100000
Q ss_pred hhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEE
Q 004923 278 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 357 (723)
Q Consensus 278 ~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~ 357 (723)
. .+...+..+++..++++||+.++. |+ +.++|.++++++.+ .++|++
T Consensus 494 ~----------------------------~~~~~~~~~d~~~~a~a~G~~~~~-v~--~~~el~~al~~a~~--~~gp~l 540 (589)
T 2pgn_A 494 Q----------------------------NNWTEFMNPDWVGIAKAFGAYGES-VR--ETGDIAGALQRAID--SGKPAL 540 (589)
T ss_dssp S----------------------------CCSCBCCCCCHHHHHHHHTCEEEE-CT--TTCCHHHHHHHHHH--HCSCEE
T ss_pred C----------------------------CccccCCCCCHHHHHHHCCCeEEE-EC--CHHHHHHHHHHHHh--CCCCEE
Confidence 0 000112235667789999999984 54 57888889998876 479999
Q ss_pred EEEEeccCCCcchh
Q 004923 358 IHVVTEKGRGYPYA 371 (723)
Q Consensus 358 I~v~T~kg~G~~~~ 371 (723)
||+.|.++.++.+.
T Consensus 541 iev~~~~~~~~~~~ 554 (589)
T 2pgn_A 541 IEIPVSKTQGLASD 554 (589)
T ss_dssp EEEECCSSSSTTTC
T ss_pred EEEEecCCCCcCcc
Confidence 99999999887653
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.27 E-value=3.6e-12 Score=146.32 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=93.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|..+++|+++||.||+.+.+..... |..
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~-~~~--- 475 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH-GAE--- 475 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHS-CTT---
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEeec-cCC---
Confidence 67999999999999999975 78999999999998 567889999999988777777775322100000 000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCC----eEEEecCCCCHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL----YYIGPVDGHNVDDL 340 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~----~~~~~vDGhd~~~l 340 (723)
..| .++-..++..++++||+ .++. + ++.++|
T Consensus 476 -------------~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~-v--~~~~~l 510 (552)
T 1ovm_A 476 -------------QRY-----------------------------NDIALWNWTHIPQALSLDPQSECWR-V--SEAEQL 510 (552)
T ss_dssp -------------CGG-----------------------------GCCCCCCGGGSTTTSCSSCCEEEEE-E--CBHHHH
T ss_pred -------------CCc-----------------------------ccCCCCCHHHHHHHhCCCcCCCEEE-e--CCHHHH
Confidence 000 11223567788999999 7774 4 579999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccCC
Q 004923 341 VAILEEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 341 ~~al~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
.++++++++ .++|++||+.|.+..
T Consensus 511 ~~al~~a~~--~~gp~liev~~~~~~ 534 (552)
T 1ovm_A 511 ADVLEKVAH--HERLSLIEVMLPKAD 534 (552)
T ss_dssp HHHHHHHTT--CSSEEEEEEECCTTC
T ss_pred HHHHHHHHh--CCCCEEEEEEcCccc
Confidence 999998876 579999999999754
No 44
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.27 E-value=5.2e-12 Score=146.16 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=93.9
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|.++++|+++||.||+.+.+....+...
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---- 480 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---- 480 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS----
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh----
Confidence 67999999999999999975 7899999999999965 6899999999999888887775333211111000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.|. ..+ .++-.+++..++++|||.++. | ++.++|.+++
T Consensus 481 --------------~~~-----------~~~--------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 518 (590)
T 1v5e_A 481 --------------NKN-----------LFG--------------VDFTDVDYAKIAEAQGAKGFT-V--SRIEDMDRVM 518 (590)
T ss_dssp --------------CCS-----------CCC--------------CCCCCCCHHHHHHHTTSEEEE-E--CBHHHHHHHH
T ss_pred --------------cCC-----------Ccc--------------ccCCCCCHHHHHHHcCCEEEE-E--CCHHHHHHHH
Confidence 000 000 001124455679999999984 4 4789999999
Q ss_pred HHhhhc-CCCCcEEEEEEeccCC
Q 004923 345 EEVKNT-KTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~-~~~~P~~I~v~T~kg~ 366 (723)
+++.+. ..++|++||+.|.++.
T Consensus 519 ~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 519 AEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHhcCCCCCEEEEEEecccc
Confidence 988752 0178999999999877
No 45
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.26 E-value=4.2e-12 Score=147.76 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=93.7
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+.+++|+++||.||+.+++
T Consensus 440 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~------------ 501 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGL------------ 501 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHH------------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchH------------
Confidence 56999999999999999975 7899999999999954 78999999999998777777763221
Q ss_pred chhhHHHhhhhcCh-----hhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHH
Q 004923 265 GALSSALSRLQSNR-----PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDD 339 (723)
Q Consensus 265 g~l~~~l~~~~~~~-----~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~ 339 (723)
.+.+++....+ .|.. ..... ......++..++++||+.++. | ++.++
T Consensus 502 ---~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------~~~~~~d~~~~a~a~G~~~~~-v--~~~~e 553 (616)
T 2pan_A 502 ---IRQSQRAFDMDYCVQLAFEN-------------INSSE---------VNGYGVDHVKVAEGLGCKAIR-V--FKPED 553 (616)
T ss_dssp ---HHHHGGGGTCCCSCBCCCCC-------------TTCGG---------GTTCCCCHHHHHHHTTCEEEE-E--CSGGG
T ss_pred ---HHHHHHHhcCCccccccccc-------------ccccc---------CCCCCCCHHHHHHHcCCeEEE-E--CCHHH
Confidence 11111110000 0000 00000 000013556679999999985 4 57888
Q ss_pred HHHHHHHhhhc--CCCCcEEEEEEeccCCCc
Q 004923 340 LVAILEEVKNT--KTTGPVLIHVVTEKGRGY 368 (723)
Q Consensus 340 l~~al~~a~~~--~~~~P~~I~v~T~kg~G~ 368 (723)
|.++++++.+. ..++|++||+.|.++.-.
T Consensus 554 l~~al~~a~~~~~~~~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 554 IAPAFEQAKALMAQYRVPVVVEVILERVTNI 584 (616)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEEEBCSCCCC
T ss_pred HHHHHHHHHhhcccCCCcEEEEEEecccccC
Confidence 88888887640 036899999999998843
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.24 E-value=6.4e-12 Score=144.74 Aligned_cols=126 Identities=19% Similarity=0.290 Sum_probs=94.5
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|+++++|+++||.||+.+++....+
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~------- 473 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIH------- 473 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-------
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeec-------
Confidence 57899999999999999875 789999999999995 56789999999988777776665322211000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCC-----eEEEecCCCCHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNVDD 339 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~-----~~~~~vDGhd~~~ 339 (723)
...| .+.-..++..++++||+ .++. | ++.++
T Consensus 474 ------------~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~-v--~~~~e 509 (566)
T 2vbi_A 474 ------------DGPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLK-A--TTPKE 509 (566)
T ss_dssp ------------CCGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEE-E--CSHHH
T ss_pred ------------cCCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEE-e--CCHHH
Confidence 0001 01113466778999999 8885 4 57999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEeccCCCc
Q 004923 340 LVAILEEVKNTKTTGPVLIHVVTEKGRGY 368 (723)
Q Consensus 340 l~~al~~a~~~~~~~P~~I~v~T~kg~G~ 368 (723)
|.++++++.+. .++|++||+.|.+....
T Consensus 510 l~~al~~a~~~-~~gp~liev~~~~~~~~ 537 (566)
T 2vbi_A 510 LTEAIARAKAN-TRGPTLIECQIDRTDCT 537 (566)
T ss_dssp HHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEEeCcccCc
Confidence 99999999862 27999999999987654
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.22 E-value=1.2e-11 Score=142.73 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=92.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+
T Consensus 423 ~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~------------ 484 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTV------------ 484 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHH------------
T ss_pred cchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHH------------
Confidence 67999999999999999975 789999999999985 577899999999998877777753221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCe-----EEEecCCCCHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-----YIGPVDGHNVDD 339 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~-----~~~~vDGhd~~~ 339 (723)
. +.+... ... + .++-..++..++++||+. ++. | ++.++
T Consensus 485 --~-~~~~~~--~~~----------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~~-v--~~~~e 527 (570)
T 2vbf_A 485 --E-REIHGP--TQS----------------------------Y-NDIPMWNYSKLPETFGATEDRVVSKI-V--RTENE 527 (570)
T ss_dssp --H-HHHSCT--TCG----------------------------G-GCCCCCCGGGHHHHTTCCTTTEEEEE-E--CBHHH
T ss_pred --H-HHHhcc--CCC----------------------------c-cCCCCCCHHHHHHHcCCCcCCcceEE-e--cCHHH
Confidence 0 000000 000 0 112235677889999997 664 4 57999
Q ss_pred HHHHHHHh-hhcCCCCcEEEEEEeccCCC
Q 004923 340 LVAILEEV-KNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 340 l~~al~~a-~~~~~~~P~~I~v~T~kg~G 367 (723)
|.++++++ .+ .++|++||+.|.+..-
T Consensus 528 l~~al~~a~~~--~~~p~liev~~~~~~~ 554 (570)
T 2vbf_A 528 FVSVMKEAQAD--VNRMYWIELVLEKEDA 554 (570)
T ss_dssp HHHHHHHHHHC--TTSEEEEEEECCTTCC
T ss_pred HHHHHHHHHhc--CCCcEEEEEEcCcccc
Confidence 99999984 54 5789999999997653
No 48
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.20 E-value=1.5e-11 Score=141.67 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+.+++
T Consensus 420 ~~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~------------ 481 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEM------------ 481 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHH------------
T ss_pred ccccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcE------------
Confidence 46899999999999999975 78999999999999 8889999999999887777766653221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
+. ..+....| .++-..++..++++||+.++. | ++.++|.+++
T Consensus 482 --~~----~~~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 523 (565)
T 2nxw_A 482 --LR----TFQPESAF-----------------------------NDLDDWRFADMAAGMGGDGVR-V--RTRAELKAAL 523 (565)
T ss_dssp --HH----HHCTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEE-E--CBHHHHHHHH
T ss_pred --Ee----eecccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEE-e--CCHHHHHHHH
Confidence 10 00000000 111124556779999999985 4 5789999999
Q ss_pred HHhhhcCCCCcE-EEEEEeccCC
Q 004923 345 EEVKNTKTTGPV-LIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~-~I~v~T~kg~ 366 (723)
+++.+ .++|+ +||+.|.+..
T Consensus 524 ~~a~~--~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 524 DKAFA--TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHH--CCSSCEEEEEECCTTC
T ss_pred HHHHh--cCCCeEEEEEEccccc
Confidence 99886 46888 9999998754
No 49
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.19 E-value=1.9e-11 Score=140.85 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+....+
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~------- 477 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIH------- 477 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-------
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeec-------
Confidence 56899999999999999975 789999999999984 57889999999988877776665322211000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCC---------eEEEecCCC
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL---------YYIGPVDGH 335 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~---------~~~~~vDGh 335 (723)
...|. ++-..++..++++||+ .++ .+ +
T Consensus 478 ------------~~~~~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~-~v--~ 513 (568)
T 2wvg_A 478 ------------DGPYN-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGL-KA--K 513 (568)
T ss_dssp ------------CCGGG-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEE-EE--S
T ss_pred ------------cCCCc-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceE-Ee--C
Confidence 00010 1112345566899999 777 44 5
Q ss_pred CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCc
Q 004923 336 NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGY 368 (723)
Q Consensus 336 d~~~l~~al~~a~~~~~~~P~~I~v~T~kg~G~ 368 (723)
+.++|.++++++.+. .++|++||+.|.+....
T Consensus 514 ~~~el~~al~~a~~~-~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 514 TGGELAEAIKVALAN-TDGPTLIECFIGREDCT 545 (568)
T ss_dssp BHHHHHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEEEcCccccC
Confidence 789999999998862 27999999999987654
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.18 E-value=3.3e-11 Score=138.81 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=93.4
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-CcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~-s~~t~~~~g~~~~ 263 (723)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+.+ ++. ..+.
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~-~~~~----- 490 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN-EADP----- 490 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC-CCCS-----
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH-HHHh-----
Confidence 468899999999999998 378999999999998 56788999999999988888888632 221 0000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~a 343 (723)
... .+ .. ..+-.+++..++++||+.++.+ ++.++|.++
T Consensus 491 ~~~------------~~------------------~~---------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 528 (568)
T 2c31_A 491 QPG------------VI------------------SC---------TRLTRGRYDMMMEAFGGKGYVA---NTPAELKAA 528 (568)
T ss_dssp BTT------------BC------------------CT---------TBCCCCCHHHHHHTTTCEEEEE---SSHHHHHHH
T ss_pred hcC------------Cc------------------cc---------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHH
Confidence 000 00 00 0011245566799999999854 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 004923 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 344 l~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
++++.+ .++|++||+.|.+...
T Consensus 529 l~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 529 LEEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHh--CCCCEEEEEEeccccC
Confidence 999876 4789999999998654
No 51
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.17 E-value=5.7e-11 Score=136.71 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=93.6
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-CcCccCCCCCCCC
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 263 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~-s~~t~~~~g~~~~ 263 (723)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+.+ ++......+.
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~--- 488 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGA--- 488 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSS---
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhcc---
Confidence 568999999999999998 378999999999998 45688999999999988888888632 2210000000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhccc-CCCccchhhccCCeEEEecCCCCHHHHHH
Q 004923 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (723)
Q Consensus 264 vg~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~-~~~~~~lfea~G~~~~~~vDGhd~~~l~~ 342 (723)
+.. .. ..+. .+++..++++||+.++.. ++.++|.+
T Consensus 489 -~~~-------------------------------~~---------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 524 (564)
T 2q28_A 489 -GAP-------------------------------SP---------TDLLHHARYDKLMDAFRGVGYNV---TTTDELRH 524 (564)
T ss_dssp -CCC-------------------------------CT---------TBCCTTCCGGGGGGGGTCEEEEE---CSHHHHHH
T ss_pred -CCc-------------------------------cc---------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHH
Confidence 000 00 0001 246778899999999854 67999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCC
Q 004923 343 ILEEVKNTKTTGPVLIHVVTEKGRG 367 (723)
Q Consensus 343 al~~a~~~~~~~P~~I~v~T~kg~G 367 (723)
+++++.+ .++|++||+.|.+...
T Consensus 525 al~~a~~--~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 525 ALTTGIQ--SRKPTIINVVIDPAAG 547 (564)
T ss_dssp HHHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHHh--CCCCEEEEEEeccccC
Confidence 9999876 4789999999997654
No 52
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.17 E-value=2.7e-11 Score=139.28 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=89.7
Q ss_pred CcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcc
Q 004923 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (723)
Q Consensus 186 ~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg 265 (723)
.|++|. +|+|+|+|+| . +++|||++|||+++ +..++|++|.++++|+++||.||+...+- +
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~-----------~ 476 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIF-----------S 476 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcc-----------c
Confidence 466666 9999999998 3 78899999999998 55677999999999999999888742210 0
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHH
Q 004923 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (723)
Q Consensus 266 ~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~ 345 (723)
.+ ... ....+.+....-.+|+..++++||+.++.+ ++.++|.++++
T Consensus 477 ~~----~~~---------------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 522 (556)
T 3hww_A 477 LL----PTP---------------------------QSERERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFA 522 (556)
T ss_dssp -------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHH
T ss_pred CC----CCc---------------------------chhHHHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHH
Confidence 00 000 000000111122467788899999998844 57899999999
Q ss_pred HhhhcCCCCcEEEEEEeccCC
Q 004923 346 EVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 346 ~a~~~~~~~P~~I~v~T~kg~ 366 (723)
++++ .++|++|||.|.+..
T Consensus 523 ~a~~--~~gp~liev~~~~~~ 541 (556)
T 3hww_A 523 DAWR--TPTTTVIEMVVNDTD 541 (556)
T ss_dssp HHTT--SSSEEEEEEECCSSH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 9986 579999999998654
No 53
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.13 E-value=2.8e-11 Score=140.52 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCc
Q 004923 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (723)
Q Consensus 185 g~G~~G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~v 264 (723)
|.|.+|+++|+|+|+|+|. +++|||++|||+++.+ +++|++|.++++|+++||.||+...+-.
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~---------- 515 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFS---------- 515 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGG----------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccc----------
Confidence 4577899999999999993 6889999999999965 5679999999999888887775322200
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHH
Q 004923 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (723)
Q Consensus 265 g~l~~~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al 344 (723)
.+ ...|... ..+.+......+++..++++||+.++. | ++.++|.+++
T Consensus 516 -~~----~~~q~~~-------------------------~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 562 (604)
T 2x7j_A 516 -FL----PQASEKT-------------------------HFEDLFGTPTGLDFKHAAALYGGTYSC-P--ASWDEFKTAY 562 (604)
T ss_dssp -GS----GGGSCHH-------------------------HHHHHTTCCCCCCTHHHHHHTTCEEEC-C--SSHHHHHHHC
T ss_pred -cC----CCCccch-------------------------hhHhhccCCCCCCHHHHHHHcCCeEEe-c--CCHHHHHHHH
Confidence 00 0000000 001111112246778889999999884 4 4789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 004923 345 EEVKNTKTTGPVLIHVVTEKGR 366 (723)
Q Consensus 345 ~~a~~~~~~~P~~I~v~T~kg~ 366 (723)
+++.+ .++|++||+.|.+..
T Consensus 563 ~~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 563 APQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCCS--SCCEEEEEEECCHHH
T ss_pred HHHHh--CCCCEEEEEECCccc
Confidence 88775 589999999998654
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.03 E-value=1.6e-10 Score=133.43 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=81.6
Q ss_pred chhhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhH
Q 004923 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSS 269 (723)
Q Consensus 190 G~~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~ 269 (723)
|+++|+|+|+|+ .+++|||++|||+++ +.+++|++|..+++|+++||.||+...+ + +
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~--------------~-~ 495 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGI--------------F-S 495 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCcc--------------c-c
Confidence 347999999964 278899999999998 5677899999999999999999974221 0 0
Q ss_pred HHhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCCCCHHHHHHHHHHhhh
Q 004923 270 ALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN 349 (723)
Q Consensus 270 ~l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDGhd~~~l~~al~~a~~ 349 (723)
.+...+....|. ........+|+..++++||+.++.+ ++.++|.++|+++.+
T Consensus 496 ~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFE-------------------------SLFGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT
T ss_pred ccccccccchhh-------------------------hhccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh
Confidence 000000000000 0000012367788899999998854 689999999999987
Q ss_pred cCCCCcEEEEEEeccCCCcch
Q 004923 350 TKTTGPVLIHVVTEKGRGYPY 370 (723)
Q Consensus 350 ~~~~~P~~I~v~T~kg~G~~~ 370 (723)
.++|++||+.|.+...+.+
T Consensus 548 --~~gp~liev~~~~~~~~~~ 566 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKAN 566 (578)
T ss_dssp --SSSEEEEEEC---------
T ss_pred --CCCCEEEEEECCccccHHH
Confidence 5899999999988765544
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.17 E-value=2.5e-06 Score=105.56 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 004923 209 KNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (723)
Q Consensus 209 ~~~vv~viGDG-a~~~G~~~EAln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~l~~~~~~~~~~~lr~~~ 287 (723)
++.|||+.||| +++.| ...|.+|...+.|+++||.||+.++. |..+.....+.+..
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~-tg~Q~s~~t~~~~~-------------------- 1009 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSN-TGGQSSKATPTGAV-------------------- 1009 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTT-TTCBCCTTSCTTCC--------------------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHh-HHhhhccCCCCCce--------------------
Confidence 47899999999 88855 45799999999999999999984332 11111111111100
Q ss_pred hhhccccCCchHHHHHHHHHHhhcccCCCccchhhccCCeEEEecCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEecc
Q 004923 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEK 364 (723)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vDG-hd~~~l~~al~~a~~~~~~~P~~I~v~T~k 364 (723)
++ +. ...+....+|+..++++||+.|+..+.= .+.+++.++++++.+ .+||++|++.+..
T Consensus 1010 ---t~--------~~----~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1010 ---AK--------FA----AAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYATC 1070 (1231)
T ss_dssp ---BB--------TB----TTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECCC
T ss_pred ---ee--------ec----ccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeecC
Confidence 00 00 0001111256677899999999866644 599999999999987 5899999999864
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.00 E-value=0.3 Score=56.00 Aligned_cols=111 Identities=11% Similarity=-0.050 Sum_probs=76.7
Q ss_pred eccccHHHHHHHHHHHHhcCCeeEEe--ehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhHhhh
Q 004923 445 DVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFM 520 (723)
Q Consensus 445 d~GIaE~~~v~~AaGlA~~G~~p~~~--t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~a~~ 520 (723)
-....|++++.+|.|+|....||-+. |+.+.+..++.-+. .+...+.|++++...... .|.+ .+|......++
T Consensus 47 i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~-~A~~~~vPll~Itg~~p~~~~g~~--~~Q~~d~~~~~ 123 (590)
T 1v5e_A 47 LQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLY-DAAMDNIPVVAILGSRPQRELNMD--AFQELNQNPMY 123 (590)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTTT--CTTCCCCHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHH-HHHhcCCCEEEEcCCCCcccCCCC--cccccCHHHHH
Confidence 34589999999999999985554433 47777666655553 566779999888733221 2332 35655556788
Q ss_pred hcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCCC
Q 004923 521 ACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (723)
Q Consensus 521 ~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~~ 560 (723)
+.+..+ .+.+.+++++..++..|++. ..+|++| +|...
T Consensus 124 ~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 124 DHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 887666 66777888888777777763 3489999 98853
No 57
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=91.02 E-value=2.2 Score=48.33 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=72.3
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeE-EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCc----
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 513 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~---- 513 (723)
|++.+ ..|++++.+|.|+|.. | ..+ +.|+.+....++.-+. .+...+.|++++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIG-GAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 55554 9999999999999976 8 433 3457777666666554 567889999888733222 3333233442
Q ss_pred --hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCCC
Q 004923 514 --SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (723)
Q Consensus 514 --~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~~ 560 (723)
.....+++.+--+. +...+++++...+..|++ ...+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAA-EAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCCHHHHHHTTSCSCE-EEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chHHHHHHHHhhEeEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 12356777776663 444555555555544443 13499999988753
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.89 E-value=1 Score=51.25 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=73.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|.|+|.. |...+| .|+.+.+..++.-+ ..+...+.|++++...... .|. ..||.....
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC--------CCCHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--CcccccCHH
Confidence 55554 8999999999999997 533333 45777665555544 3566779998888632221 232 246766666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+.-+ .+...+++++...+..|+.. ..+|++|-+|..
T Consensus 126 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 126 AMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 788887665 44556677777767666652 358999988875
No 59
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=90.69 E-value=1.8 Score=49.74 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=77.2
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE--eehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCCC-CCCCCCCCCchhh
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC--AIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFD 516 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~--~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G~-~G~dG~tH~~~~d 516 (723)
|++ ....|++++.+|.|+|.. |.+|-+ .|+.+....++.-| ..+.+.+.|++++. ++..- .+.+ .+|....
T Consensus 67 ~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~ 142 (616)
T 2pan_A 67 RHI-LARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHKE--DFQAVDI 142 (616)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCH
T ss_pred cEE-eeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCcc--cccccCH
Confidence 444 459999999999999997 566543 45777765556654 46677899988886 33321 3332 2455445
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+--+. +...++.++..+++.|++. ..+|++|-+|..
T Consensus 143 ~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 143 EAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 56777776664 4456678888888888763 358999988764
No 60
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.47 E-value=0.96 Score=51.67 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=77.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEee-CCC-CCCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAG-LVGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~-~~G-~~G~dG~tH~~~~d~ 517 (723)
|++. ...|++++.+|.|+|.. |...+| .|+.+....++.-+ ..+...+.|++++.. +.- ..|.+ .+|.....
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~~--~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGTD--AFQETPIV 127 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTTT--CTTCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCCC--cccccCHH
Confidence 4444 58999999999999997 543333 35777765555544 456778999988863 321 13332 35656566
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
.+++.+-.+ .+...+++++..++..|++. ..+|++|-+|..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 788887766 45667788888888888864 357999988764
No 61
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=90.02 E-value=0.93 Score=51.59 Aligned_cols=115 Identities=18% Similarity=0.073 Sum_probs=78.7
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeE--EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKPF--CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p~--~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d 516 (723)
=|++. ...|++++-+|-|+|....+|. +.|+.+....++.-+ ..+...+.|++++...... .|.. ..||....
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCCc-CccccCCH
Confidence 45554 4899999999999999744443 345777776666655 4567789999888733221 2321 35777777
Q ss_pred HhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..+++.+.-+ .+...+++++...+..|+.. ..+|++|-+|..
T Consensus 126 ~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7888887765 34556677777777777652 348999988864
No 62
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=89.98 E-value=2 Score=48.73 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=70.8
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCc----
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 513 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~---- 513 (723)
|++. ...|++++.+|.|+|.. | ..+| .|+.+....++.-+. .+...+.|++++...... .+.+...||.
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNALG-GAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHH-HHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 4554 58999999999999986 8 4444 357776666666554 567789999888733222 3332223432
Q ss_pred --hhhHhhhhcCCCcEEEccCCHHH----HHHHHHHHHHhCCCCEEEEecCCC
Q 004923 514 --SFDVTFMACLPNMVVMAPSDEAE----LFHMVATAAAIDDRPSCFRYPRGN 560 (723)
Q Consensus 514 --~~d~a~~~~iP~l~V~~Psd~~E----~~~~l~~A~~~~~~P~~ir~~r~~ 560 (723)
.....+++.+--+. +.+.++++ +..++..|... .+|++|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 12356777776543 33333333 44455555443 499999998754
No 63
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=89.80 E-value=1.6 Score=49.47 Aligned_cols=151 Identities=16% Similarity=0.056 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh---hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeE-Eeehh
Q 004923 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYS 473 (723)
Q Consensus 399 ~~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l---~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s 473 (723)
.+..+++.+.|.+.. -+.++.. .|+..+ +.+.+ .+.+.+-....|++++.+|.|+|.. |...+ +.|+.
T Consensus 21 ~~~a~~lv~~L~~~G---V~~vfg~---PG~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsG 93 (565)
T 2nxw_A 21 MKLAEALLRALKDRG---AQAMFGI---PGDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYG 93 (565)
T ss_dssp CBHHHHHHHHHHHTT---CCCEEEC---CCGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHcC---CCEEEEC---CCcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 355566655555432 2333332 233322 34443 3444556679999999999999997 53333 33577
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCC-CCc--hh-hHhhhhcCCCcEEEccCCHHH----HHHHHHH
Q 004923 474 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--SF-DVTFMACLPNMVVMAPSDEAE----LFHMVAT 543 (723)
Q Consensus 474 ~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~t-H~~--~~-d~a~~~~iP~l~V~~Psd~~E----~~~~l~~ 543 (723)
+....++.-+ ..+...+.|++++...... .|.+... |+. +. ...+++.+--+... ..++++ +..++..
T Consensus 94 pG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~-v~~~~~~~~~i~~A~~~ 171 (565)
T 2nxw_A 94 AGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQAR-LDDPAKAPAEIARVLGA 171 (565)
T ss_dssp HHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEE-CCCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEE-eCCHHHHHHHHHHHHHH
Confidence 7765555544 3567789999988733221 3433333 332 22 35677777665433 333433 4445555
Q ss_pred HHHhCCCCEEEEecCC
Q 004923 544 AAAIDDRPSCFRYPRG 559 (723)
Q Consensus 544 A~~~~~~P~~ir~~r~ 559 (723)
|... .+|++|-+|+.
T Consensus 172 A~~~-~GPV~l~iP~D 186 (565)
T 2nxw_A 172 ARAQ-SRPVYLEIPRN 186 (565)
T ss_dssp HHHH-TCCEEEEEEGG
T ss_pred HHhC-CCCEEEECChh
Confidence 5443 69999999864
No 64
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=89.21 E-value=0.89 Score=51.59 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=80.4
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCC
Q 004923 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (723)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG 508 (723)
+.+.+. +=|++.+ ..|++++.+|.|+|.. |...+| .|+.+.+..++.-+. .+...+.|++++...... .|.
T Consensus 35 ~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~-~A~~~~~Pll~itg~~~~~~~~~-- 109 (563)
T 2uz1_A 35 QACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIA-NAWLDRTPVLFLTGSGALRDDET-- 109 (563)
T ss_dssp HHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTS--
T ss_pred HHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHH-HHHhcCCCEEEEeCCCCcccCCc--
Confidence 344443 4566664 8999999999999997 543333 357777666655543 566789999888733222 333
Q ss_pred CCCCc-hhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 509 PTHCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 509 ~tH~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
..||. .....+++.+.-+ .+...+++++...+..|+.. ..+|++|-+|..
T Consensus 110 ~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 110 NTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 23666 6666788877665 45556777777777776652 458999988875
No 65
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.04 E-value=2.5 Score=47.73 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=73.2
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeE-EeehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G-~~G~dG~tH~~~~d~ 517 (723)
|++. ...|++++-+|-|+|.. |...+ +.|+.+....++.-| ..+...+.|++++. ++.- ..|.+ .+|.....
T Consensus 43 ~~i~-~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~~--~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMS-TRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQ 118 (549)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTSC--CTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCCC--CCCccCHH
Confidence 5554 48999999999999997 54333 345777766555544 46678899999886 3221 13332 35555566
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~~r~ 559 (723)
.+++.+-.+. ....+++++...+..|+. ...+|++|-+|..
T Consensus 119 ~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHYC-ELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSEE-EECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred HHHhhhhheE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 7788776653 344456555555555554 2568999988764
No 66
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=88.97 E-value=1.5 Score=50.08 Aligned_cols=113 Identities=8% Similarity=-0.029 Sum_probs=75.1
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCee--EEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACEGLKP--FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~G~~p--~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++.+|-|+|....+| ++.|+.+....++.-| ..+...+.|++++...... .|. |..||.....
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 55554 89999999999999974343 3445777655554444 4667889999888732221 232 2157777666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r~ 559 (723)
. ++.+.-+ .+...+++++...+..|+.. ..+|++|-+|..
T Consensus 122 ~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7 7776655 34556677777777777652 347999998875
No 67
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=88.46 E-value=2 Score=50.07 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=76.3
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeE-EeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++. ...|++++.+|.|+|.. |...+ +.|+.+....++.-| ..+...++||+++...... .|.+ .+|.....
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~~--a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGTD--AFQEADVV 197 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTSC--CTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCCC--CccccCHH
Confidence 4554 58999999999999997 54333 345777765555554 3566779999888732221 2332 35666666
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHHh----CCCCEEEEecC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPR 558 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~----~~~P~~ir~~r 558 (723)
.+++.+--+. +...+++++...+..|+.. ..+|++|-+|.
T Consensus 198 ~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 7888776664 4455778888888888763 46899998884
No 68
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=87.50 E-value=3.2 Score=47.09 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=69.6
Q ss_pred eeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCch-----
Q 004923 444 FDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS----- 514 (723)
Q Consensus 444 id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~----- 514 (723)
+-....|++++.+|.|+|.. | ..+| .|+.+....++.-+. .+...+.|++++...... .+.+...||..
T Consensus 66 ~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi~-~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
T 2vbf_A 66 WIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLA-GSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDF 143 (570)
T ss_dssp EEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCC
T ss_pred EECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCCHHHhhccccceeeccccch
Confidence 34469999999999999965 8 4433 357777766666553 667789999988632221 22233344421
Q ss_pred -hhHhhhhcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEecCC
Q 004923 515 -FDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (723)
Q Consensus 515 -~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~~r~ 559 (723)
+...+++.+.-+....+ + +++...+..|++. ..+|++|-+|..
T Consensus 144 ~~~~~~~~~~tk~~~~v~-~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 144 KHFMKMHEPVTAARTLLT-A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp CHHHHHTGGGCSEEEECC-T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred HHHHHHhhhhEEEEEEEC-c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 13456777766544443 3 5555555544431 348999988764
No 69
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=87.44 E-value=2.9 Score=47.79 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=71.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G-~~G~dG~tH~~~~d~ 517 (723)
|++. ...|++++-+|.|+|.. |...+| .|+.+....++.-| ..+...+.||+++. ++.- ..|.+ .+|.....
T Consensus 52 ~~i~-~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~ 127 (603)
T 4feg_A 52 HYIQ-VRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD--TFQEMNEN 127 (603)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCG
T ss_pred eEEE-ecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC--ccccccHH
Confidence 5554 48999999999999987 543333 45777766655554 46678899999886 3221 12332 34555455
Q ss_pred hhhhcCCCcEEE--ccCC-HHHHHHHHHHHHHhCCCCEEEEecCC
Q 004923 518 TFMACLPNMVVM--APSD-EAELFHMVATAAAIDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V~--~Psd-~~E~~~~l~~A~~~~~~P~~ir~~r~ 559 (723)
.+++.+--+... .|.+ +..+..+++.|.. ..+|++|-+|..
T Consensus 128 ~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 128 PIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp GGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred HHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 677776655333 3333 2333445555544 478999999875
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=85.62 E-value=1.7 Score=48.72 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=73.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~~d~ 517 (723)
|++ ....|++++.+|.|+|.. |...+| .|..+.+..++.-+. .+...+.|++++...... .|.+...|. ....
T Consensus 40 ~~i-~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~-~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYI-LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALS-NAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHH-HHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEE-EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHH-HHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 444 458999999999999998 654444 346677666666653 567789999988632221 344333331 3445
Q ss_pred hhhhcCCCcEEEccCCHHHHHHHHHHHHH----hCCCCEEEEecCCC
Q 004923 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 560 (723)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~l~~A~~----~~~~P~~ir~~r~~ 560 (723)
.+++.+..+ ...+.+++++...+..|+. ...+|++|-+|...
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 677777665 3455566666656665554 34579999988753
No 71
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=85.15 E-value=8.5 Score=43.38 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=70.6
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCch---
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 514 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~--- 514 (723)
|++. ...|++++.+|.|+|.. | .++| .|+.+....++.-+ ..+...+.|++++...... .+.+-..||..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 4444 59999999999999986 7 4444 45777765565554 3566789999988632221 12222222211
Q ss_pred ---hhHhhhhcCCCcEEEccCC----HHHHHHHHHHHHHhCCCCEEEEecCCC
Q 004923 515 ---FDVTFMACLPNMVVMAPSD----EAELFHMVATAAAIDDRPSCFRYPRGN 560 (723)
Q Consensus 515 ---~d~a~~~~iP~l~V~~Psd----~~E~~~~l~~A~~~~~~P~~ir~~r~~ 560 (723)
+...+++.+--+.. ...+ +..+..+++.|... .+|++|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTA-MITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEE-ECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 23467777765543 3334 44555666666544 499999998753
No 72
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=84.27 E-value=12 Score=42.15 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCCCCcCh---hhhhhhCCC-ceeeccccHHHHHHHHHHHHhc-CCeeE-EeehhHHHH
Q 004923 405 FAEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQ 477 (723)
Q Consensus 405 ~~~aL~~~~~~d-~~iv~i~aD~~gs~~l---~~f~~~~p~-R~id~GIaE~~~v~~AaGlA~~-G~~p~-~~t~s~Fl~ 477 (723)
.++.|.+.+++. -+.++.. .|+..+ +.+.+ .++ |++- -..|++++-+|-|+|.. |...+ +.|+.+...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICIA---PGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEEC---CCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEc---CCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 345555555443 2333332 244433 33433 343 5554 56899999999999996 64333 345777765
Q ss_pred HHHHHHHHHhhcCCCCEEEEee-CC-CCCCCCCCCCCchhhHhhhhcCCCcEEEc--cCC---HHHHHHHHHHHHHh-CC
Q 004923 478 RAYDQVVHDVDLQKLPVRFAMD-RA-GLVGADGPTHCGSFDVTFMACLPNMVVMA--PSD---EAELFHMVATAAAI-DD 549 (723)
Q Consensus 478 ra~dqi~~~~a~~~lpv~~v~~-~~-G~~G~dG~tH~~~~d~a~~~~iP~l~V~~--Psd---~~E~~~~l~~A~~~-~~ 549 (723)
.++.-| ..+...+.|++++.. .. ...|.+ .||......+++.+--+.... |.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 555544 466778999998863 22 113432 377666667777776665443 432 45788899999863 35
Q ss_pred CCEEEEecCC
Q 004923 550 RPSCFRYPRG 559 (723)
Q Consensus 550 ~P~~ir~~r~ 559 (723)
+|++|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999999874
No 73
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=83.55 E-value=4.5 Score=46.21 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCcCh---hhhhhhCC-CceeeccccHHHHHHHHHHHHhcCCee-E-Eeehh
Q 004923 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKP-F-CAIYS 473 (723)
Q Consensus 400 ~~~~~~~~aL~~~~~~d~~iv~i~aD~~gs~~l---~~f~~~~p-~R~id~GIaE~~~v~~AaGlA~~G~~p-~-~~t~s 473 (723)
++.+++.+.|.+. .-+.++.. .|+..+ +.+.+ .+ =|++.+ ..|++++-+|-|+|..-.|| + +.|+.
T Consensus 32 ~~a~~lv~~L~~~---GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsG 103 (604)
T 2x7j_A 32 HYIGSFIDEFALS---GITDAVVC---PGSRSTPLAVLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSG 103 (604)
T ss_dssp HHHHHHHHHHHHH---TCCEEEEC---CCSTTHHHHHHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred HHHHHHHHHHHHc---CCCEEEEC---cCcccHHHHHHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECCh
Confidence 4555555555443 23334432 234433 33433 33 355555 99999999999999974444 3 34577
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCCCchhhHhhhhcCCCcEEE--ccCC--------HHHHHHHH
Q 004923 474 SFMQRAYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGSFDVTFMACLPNMVVM--APSD--------EAELFHMV 541 (723)
Q Consensus 474 ~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G-~~G~dG~tH~~~~d~a~~~~iP~l~V~--~Psd--------~~E~~~~l 541 (723)
+....++.-| ..+...+.|++++. ++.- ..|.+ .+|......+++.+--+... .|.+ +..+..++
T Consensus 104 pG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~ 180 (604)
T 2x7j_A 104 TAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAA 180 (604)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHH
Confidence 7765555544 45667799998887 3221 13332 35655555677776665443 3444 23344444
Q ss_pred HHHHHhCCCCEEEEecCC
Q 004923 542 ATAAAIDDRPSCFRYPRG 559 (723)
Q Consensus 542 ~~A~~~~~~P~~ir~~r~ 559 (723)
+.|..-..+|++|-+|..
T Consensus 181 ~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 181 GEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp HHHHSSSCCEEEEEEECC
T ss_pred HHhhCCCCCcEEEEcccC
Confidence 444322568999999875
No 74
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=81.74 E-value=10 Score=43.00 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEe-eCCC-CCCCCCCCCCchhhH
Q 004923 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGSFDV 517 (723)
Q Consensus 442 R~id~GIaE~~~v~~AaGlA~~-G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~-~~~G-~~G~dG~tH~~~~d~ 517 (723)
|++.+ ..|++++-+|-|+|.. |...+| .|+.+....++.-| ..+...+.|++++. ++.- ..|.+ .+|.+...
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gi-a~A~~d~vPll~itG~~p~~~~g~~--~~Qe~d~~ 126 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAV-AEANLSQIPLIVLTADRPHELRNVG--APQAMDQL 126 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHH-HHHHHTTCCEEEEEEECCGGGTTSS--CTTCCCCT
T ss_pred eEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHH-HHHHhcCCCeEEEeCCCCHHhhcCC--CCCCcCHh
Confidence 55554 7999999999999987 543333 45777766555544 46678899998886 3321 12332 35655555
Q ss_pred hhhhcCCCcEE--EccCCHHH----HHHHHHHHHH----hCCCCEEEEecCC
Q 004923 518 TFMACLPNMVV--MAPSDEAE----LFHMVATAAA----IDDRPSCFRYPRG 559 (723)
Q Consensus 518 a~~~~iP~l~V--~~Psd~~E----~~~~l~~A~~----~~~~P~~ir~~r~ 559 (723)
.+++.+--+.. -.|.+..+ +..++..|+. ...+|++|-+|..
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 67776665543 34666333 2234444444 3578999999874
No 75
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=79.46 E-value=4 Score=43.75 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHHHHhc----C-CeeEEeeh--hHHHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCC-----CchhhHhh
Q 004923 453 AVTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDVTF 519 (723)
Q Consensus 453 ~v~~AaGlA~~----G-~~p~~~t~--s~Fl~r-a~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH-----~~~~d~a~ 519 (723)
.+.+|.|+|++ | -+++++++ +.|.+- .++ -++.++..++|+++++..-++ |..++++ ....+.+-
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~E-al~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYE-GINFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHH-HHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHH-HHHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHH
Confidence 44566666665 2 24444443 344432 233 356788999999999865553 2222221 11222222
Q ss_pred hhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 520 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
.-.+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 225 a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 225 AAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 234565543 44589999999999986 2578998864
No 76
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=78.78 E-value=14 Score=41.71 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=75.6
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCe-eEEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCC-CCCCCCchh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGSF 515 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~-G~~-p~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~-dG~tH~~~~ 515 (723)
=|++.+ ..|++++-+|-|+|.. |.- .++.|+.+....++.-+ ..+...+.|++++...... .|. .| .+|...
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 124 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMD 124 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccC
Confidence 455554 9999999999999998 543 33345888776666654 4667789999988732221 221 12 355555
Q ss_pred hHhhhhcCCCcEEEccCCHHHHHHHHHHHHH----hCCCCEEEEecCC
Q 004923 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (723)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~----~~~~P~~ir~~r~ 559 (723)
...+++.+-.+. +...+++++...+..|+. ...+|++|-+|..
T Consensus 125 q~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKAS-FRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhhee-eecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 567788776653 444556666666666655 2568999988875
No 77
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=78.56 E-value=4.2 Score=44.14 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHHHHHHhc------CCeeEEee-hhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCC--CchhhHhhhhcCC
Q 004923 454 VTFAAGLACE------GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--CGSFDVTFMACLP 524 (723)
Q Consensus 454 v~~AaGlA~~------G~~p~~~t-~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH--~~~~d~a~~~~iP 524 (723)
+.+|.|+|++ +.+++|.+ =+.|.+-.+-+-++.++..++|+++++..-++ +..+++. ....|++-...--
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHHc
Confidence 4566676664 23344433 23454332223357788899999999866553 2222322 1223332222222
Q ss_pred CcEEE--ccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 525 NMVVM--APSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 525 ~l~V~--~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
|+.++ .=.|+.++..+++.|++ ..++|++|-.
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 55443 34588999999988876 2578988764
No 78
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=77.42 E-value=16 Score=41.12 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=74.9
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee--EEeehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCC-CCCCCCchh
Q 004923 441 TRCFDVGIAEQHAVTFAAGLACEGLKP--FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGSF 515 (723)
Q Consensus 441 ~R~id~GIaE~~~v~~AaGlA~~G~~p--~~~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~-dG~tH~~~~ 515 (723)
=|++.+ ..|++++-+|-|+|..-.+| ++.|+.+....++.-| ..+...+.|++++...... .|. .| .+|...
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 455554 99999999999999984343 3345788776666654 4667789999988632221 121 12 356555
Q ss_pred hHhhhhcCCCcEEEccCCHHHHHHHHHHHHH----hCCCCEEEEecCC
Q 004923 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (723)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~----~~~~P~~ir~~r~ 559 (723)
...+++.+--+.. ...+++++...+..|+. ...+|++|-+|..
T Consensus 123 q~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAAF-RVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEEE-ECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhheee-ecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 5677887766543 33455556666666554 2468999988875
No 79
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=75.95 E-value=19 Score=40.38 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=69.8
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeEE-eehhHHHHHHHHHHHHHhhcCCCCEEEEeeCCCC--CCCCCCCCCch--
Q 004923 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS-- 514 (723)
Q Consensus 440 p~R~id~GIaE~~~v~~AaGlA~~G~~p~~-~t~s~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~--~G~dG~tH~~~-- 514 (723)
++=-+-....|++++.+|.|+|.....++| .|+.+....++.-+ ..+...+.|++++...... .+.+...|+..
T Consensus 42 ~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~ 120 (552)
T 1ovm_A 42 PDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGD 120 (552)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSS
T ss_pred CCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhcccccccccCC
Confidence 433344569999999999999987325444 35777765555554 4667889999988732221 11111222111
Q ss_pred ----hhHhhhhcCCCcEEEccCC--HHHHHHHHHHHHHhCCCCEEEEecCC
Q 004923 515 ----FDVTFMACLPNMVVMAPSD--EAELFHMVATAAAIDDRPSCFRYPRG 559 (723)
Q Consensus 515 ----~d~a~~~~iP~l~V~~Psd--~~E~~~~l~~A~~~~~~P~~ir~~r~ 559 (723)
+...+++.+--+....+.+ +..+..+++.|... .+|++|-+|..
T Consensus 121 ~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 121 GEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp SCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred CcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 1245677766655544431 34445555555443 49999988864
No 80
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=73.39 E-value=11 Score=43.67 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=55.7
Q ss_pred eeEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCCc-hhhHh-hhhcCCCcEEE-cc---CCHH
Q 004923 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDVT-FMACLPNMVVM-AP---SDEA 535 (723)
Q Consensus 466 ~p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~~-~~d~a-~~~~iP~l~V~-~P---sd~~ 535 (723)
+.++++..+. ++ ..++. ++.++..++| ++++++..++ +-+|++... .+|+. .++. -||.++ .- .|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEA-LSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHH-HHHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3455555443 23 33554 4577888998 7777766653 334444321 23433 4455 489888 44 6899
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004923 536 ELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 536 E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
++..++..|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999987656889988653
No 81
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=73.38 E-value=11 Score=43.80 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcC---------------CeeEEeehhH--HHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-
Q 004923 453 AVTFAAGLACEG---------------LKPFCAIYSS--FMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC- 512 (723)
Q Consensus 453 ~v~~AaGlA~~G---------------~~p~~~t~s~--Fl~-ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~- 512 (723)
.+++|.|+|++- -+.++++..+ +.. .+++. ++.++..++| ++++.+..++ +-+|+++.
T Consensus 145 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN~~-~i~~~~~~~ 222 (690)
T 3m49_A 145 GIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEA-SSLAAHLQLGRLVVLYDSNDI-SLDGDLNRS 222 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSB-CSSSBGGGT
T ss_pred cHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHH-HHHHHHhCCCeEEEEEECCCe-ecccchhhc
Confidence 356666776652 2345555444 331 34454 4677888987 6666665553 34454432
Q ss_pred chhhH-hhhhcCCCcEEEcc---CCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 513 GSFDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 513 ~~~d~-a~~~~iP~l~V~~P---sd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
..+|+ ..++.+ ||.++.+ .|..++..+++.|.+..++|++|...
T Consensus 223 ~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 223 FSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp CCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred cchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12233 234444 8999888 68999999999886536899888653
No 82
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=72.65 E-value=8.2 Score=44.82 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=53.8
Q ss_pred eeEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCC-CchhhHh-hhhcCCCcEEE-ccC---CHH
Q 004923 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDVT-FMACLPNMVVM-APS---DEA 535 (723)
Q Consensus 466 ~p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH-~~~~d~a-~~~~iP~l~V~-~Ps---d~~ 535 (723)
+.++++..+. ++ ..++. ++.++..++| ++++++..++ +-++++. +..+|+. .++.+ ||.++ .-- |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEA-SSLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHH-HHHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHhc-CCeEEEEecCCCCHH
Confidence 3455555443 23 34454 4677888998 7777766553 2233333 1123332 34443 88887 333 789
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004923 536 ELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 536 E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
++..+++.|.+..++|++|...
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEE
Confidence 9999999987645789887653
No 83
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=70.80 E-value=9.8 Score=44.09 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=53.6
Q ss_pred eeEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCC-CchhhHh-hhhcCCCcEEEcc---CCHHH
Q 004923 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDVT-FMACLPNMVVMAP---SDEAE 536 (723)
Q Consensus 466 ~p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH-~~~~d~a-~~~~iP~l~V~~P---sd~~E 536 (723)
+.++++..+. ++ ..++. ++.++..++| ++++++..++ +-++++. +..+|+. .++.+ ||.++.+ .|..+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEV-CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHH-HHHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHHC-CCeEEeEECCCCHHH
Confidence 3455554443 23 34554 4677888998 7777766553 2333433 2223432 44443 8877623 37999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004923 537 LFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~ 556 (723)
+..+++.|.+..++|++|..
T Consensus 224 l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 99999999764678988765
No 84
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=69.48 E-value=9.1 Score=33.09 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh-cCCCEEEEEcCCCCCChHHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~gG~g~~ 655 (723)
..+|+|++.++ ....|..|.+.|++.|+..+.+|+..- |--.+.+.+.. ..+-..|++.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 34688888884 778999999999999999999998632 11122333332 23345677876567988643
No 85
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=69.45 E-value=8.4 Score=41.81 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=55.2
Q ss_pred HHHHHHHHhc----C-CeeEEeehh--HHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCCC---chhhHh---hh
Q 004923 454 VTFAAGLACE----G-LKPFCAIYS--SFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GSFDVT---FM 520 (723)
Q Consensus 454 v~~AaGlA~~----G-~~p~~~t~s--~Fl~ra~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH~---~~~d~a---~~ 520 (723)
+.+|.|+|++ | -+.+++++. .|.+-.+-+-++.++..++|+++++..-++ |..+++.. ...|++ -.
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHHH
Confidence 3556666654 2 234444433 343322222356778899999998865553 22222221 122322 11
Q ss_pred hcCCCcEEEccCCHHHHHHHHHHHHHh---CCCCEEEEe
Q 004923 521 ACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 556 (723)
Q Consensus 521 ~~iP~l~V~~Psd~~E~~~~l~~A~~~---~~~P~~ir~ 556 (723)
-.+|++. +.=.|+.++..+++.|++. .++|++|-.
T Consensus 266 ~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 266 CGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred cCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2344443 2344788999999988763 578988754
No 86
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=66.76 E-value=16 Score=38.95 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=58.6
Q ss_pred eccccHHHHHHHHHHHHhc----C-CeeEEeeh--hHHHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCCC-----
Q 004923 445 DVGIAEQHAVTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH----- 511 (723)
Q Consensus 445 d~GIaE~~~v~~AaGlA~~----G-~~p~~~t~--s~Fl~r-a~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~tH----- 511 (723)
.+|.-+ +.+++|.|+|++ + -+++++++ +.|.+- .++. ++.++..++|+++++..-+ .|..+++.
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~-~gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG-INFAAVQGAPAVFIAENNF-YAISVDYRHQTHS 218 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHTTCSEEEEEEECS-EETTEEHHHHCSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH-HHHHHHhCcCEEEEEecCC-eeeccChhhccCC
Confidence 334433 234555555553 3 24444443 334333 3332 4577889999999886655 33333321
Q ss_pred CchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 512 CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 512 ~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
....+++-.-.+|.+. +.-.|..++..+++.|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1122222222355554 456788888888877765 2578988764
No 87
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=65.56 E-value=14 Score=32.62 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCc-eEEeecCccccccHHHHHHHh-cCCCEEEEEcCCCCCChHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLR-LTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~-v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~gG~g~ 654 (723)
..+|+|++.++ ....|..|.+.|++.|+. .+.+|+.. .|--.+.+.+.. ..+-..|+|.....||+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~ 92 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCCCCcCeEEECCEEEeChHH
Confidence 34799999984 678899999999999995 99999863 111112233322 2334677788766899864
No 88
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=65.49 E-value=11 Score=34.36 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=45.1
Q ss_pred cEEEEEec----chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
+|+|.++| .....|..|.+.|++.|+..+.+|+..- |--.+.+.+... .+-.+|++.....||+..
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d-~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCC-HHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 58888887 6678899999999999999999998642 211223333322 233567777656798853
No 89
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=65.20 E-value=29 Score=36.37 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=28.1
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T~ 363 (723)
++.. ||.++.| .|..+....++.+.+ .++|++|-..+.
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~ 176 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKR 176 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchH
Confidence 4555 8888877 678888888887776 378999876543
No 90
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=63.94 E-value=11 Score=31.79 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=48.2
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-----CCCEEEEEcCCC-CCChH-HHHHHH
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGS-IGGFG-SHVVQF 659 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-----~~~~vvvvEe~~-~gG~g-~~v~~~ 659 (723)
+.|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...++.+ .+-.+|++.++. ..|+. .++.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35677664 445679999999999999999999864 4444433322 233677787665 45654 566666
Q ss_pred HHHcC
Q 004923 660 LAQDG 664 (723)
Q Consensus 660 l~~~g 664 (723)
|.+.+
T Consensus 79 L~el~ 83 (92)
T 2lqo_A 79 LVKIA 83 (92)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76643
No 91
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=63.76 E-value=25 Score=40.60 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=51.8
Q ss_pred eeEEeehhHH--HH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEccC---CHHH
Q 004923 466 KPFCAIYSSF--MQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS---DEAE 536 (723)
Q Consensus 466 ~p~~~t~s~F--l~-ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~Ps---d~~E 536 (723)
+.++++..+. .. ..++. ++.++..++| ++++++..++ +-+|++.. ...|+ ..++.+ ||.++.+. |..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEA-CSLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHH-HHHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4455555443 31 33444 4677888998 6666665553 33333332 11232 344554 88887443 7899
Q ss_pred HHHHHHHHHHhCCCCEEEEec
Q 004923 537 LFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~~ 557 (723)
+..+++.|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999986535899888653
No 92
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=63.35 E-value=13 Score=32.37 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=49.5
Q ss_pred CCcEEEEEec----chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh-cCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 586 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~-~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
...|+|++-| +....|..|.+.|++.|+..+.+|+.. .|--.+.+.+.. ..+-..|++.....||+... . .+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l-~-~l 91 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDII-K-EL 91 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH-H-HH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHHH-H-HH
Confidence 3468888876 456789999999999999999999864 121112233332 23346777876668988643 2 34
Q ss_pred HHcCC
Q 004923 661 AQDGL 665 (723)
Q Consensus 661 ~~~g~ 665 (723)
.++|-
T Consensus 92 ~~~G~ 96 (111)
T 3zyw_A 92 EASEE 96 (111)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 44443
No 93
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=62.86 E-value=10 Score=40.52 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=56.3
Q ss_pred HHHHHHHHHhc----C-CeeEEeehhH--HHHH-HHHHHHHHhhcCCCCEEEEeeCCCCCCCCCCC--CCchhhHhh-hh
Q 004923 453 AVTFAAGLACE----G-LKPFCAIYSS--FMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGSFDVTF-MA 521 (723)
Q Consensus 453 ~v~~AaGlA~~----G-~~p~~~t~s~--Fl~r-a~dqi~~~~a~~~lpv~~v~~~~G~~G~dG~t--H~~~~d~a~-~~ 521 (723)
.+.+|.|+|++ | -+++++++.+ +.+- .++. ++.++..++|+++++..-++ |...++ .....|+.- .-
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~ 222 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGD 222 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhC
Confidence 34566666664 2 3444444433 3332 2333 57888999999999865443 111110 111112111 11
Q ss_pred cCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 522 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
.+|++.| .=.|+.++..+++.|++ ..++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3565543 44589999999998875 3578998754
No 94
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=62.65 E-value=20 Score=41.27 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=53.0
Q ss_pred eeEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEccC---CHHH
Q 004923 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS---DEAE 536 (723)
Q Consensus 466 ~p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~Ps---d~~E 536 (723)
+.++++..+. ++ ..++. ++.++..++| ++++++..++ +-++++.. ...|+ ..+..+ ||.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEA-ASLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHH-HHHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHhC-CCeEEEEeCCCCHHH
Confidence 4455554443 23 34554 4677888998 7777766553 22233221 12333 244554 88887343 7999
Q ss_pred HHHHHHHHHHhCCCCEEEEe
Q 004923 537 LFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 537 ~~~~l~~A~~~~~~P~~ir~ 556 (723)
+..+++.|.+ .++|++|..
T Consensus 228 l~~al~~a~~-~~~P~lI~~ 246 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAV 246 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEE
Confidence 9999999976 789988765
No 95
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=61.93 E-value=36 Score=38.84 Aligned_cols=102 Identities=16% Similarity=0.322 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHH-HHHhhhcCCCEEEEEECCCCCCcCccCCCCCCCCcchhhHH
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA-MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSA 270 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EA-ln~A~~~~~nli~Il~dN~~~s~~t~~~~g~~~~vg~l~~~ 270 (723)
.+++|.|+|++ | -+.+++..++.. + .++|- ++.++..++|+++++..-+.+. .+|++-.
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g-----~~G~tH~------- 432 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLPVLFAIDRAGIVG-----ADGQTHQ------- 432 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGG-G--GGHHHHHHTTTTTTCCCEEEEESCBCCC-----TTCGGGC-------
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHH-H--HHHHHHHHHHHhcCCCEEEEEECCccCC-----CCCCccC-------
Confidence 36677777764 3 467778888875 3 57765 5668888999999996655311 1222110
Q ss_pred HhhhhcChhhHHHHHHhhhhccccCCchHHHHHHHHHHhhcccCCCccchhhcc-CCeEEEecCCCCHHHHHHHHHHhhh
Q 004923 271 LSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKN 349 (723)
Q Consensus 271 l~~~~~~~~~~~lr~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~-G~~~~~~vDGhd~~~l~~al~~a~~ 349 (723)
..++++ +++.. ||.++.| .|..++...++.+.+
T Consensus 433 --------------------------~~~d~~-----------------~~~~iP~l~v~~P---~d~~e~~~~l~~a~~ 466 (621)
T 2o1s_A 433 --------------------------GAFDLS-----------------YLRCIPEMVIMTP---SDENECRQMLYTGYH 466 (621)
T ss_dssp --------------------------BCSHHH-----------------HTTTSTTCEEECC---SSHHHHHHHHHHHHH
T ss_pred --------------------------chHHHH-----------------HHhcCCCCEEEec---CCHHHHHHHHHHHHH
Confidence 001222 25555 8888878 677888888887766
Q ss_pred cCCCCcEEEEE
Q 004923 350 TKTTGPVLIHV 360 (723)
Q Consensus 350 ~~~~~P~~I~v 360 (723)
. .++|++|-.
T Consensus 467 ~-~~~Pv~i~~ 476 (621)
T 2o1s_A 467 Y-NDGPSAVRY 476 (621)
T ss_dssp C-CSSCEEEEC
T ss_pred c-CCCCEEEEe
Confidence 3 378988765
No 96
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=59.36 E-value=29 Score=40.31 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=53.9
Q ss_pred eEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEcc---CCHHHH
Q 004923 467 PFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAEL 537 (723)
Q Consensus 467 p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~P---sd~~E~ 537 (723)
.++++..+. ++ ..++. ++.++..++| ++++++.-++ +-+|++.. ..+|+ ..++.+ ||.++.. .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~EA-l~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEA-SSLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHHH-HHHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 444554443 22 33444 4678899997 8888776553 22333321 12332 234443 7887765 588999
Q ss_pred HHHHHHHHHhCCCCEEEEec
Q 004923 538 FHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 538 ~~~l~~A~~~~~~P~~ir~~ 557 (723)
..+++.|....++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999986546899998654
No 97
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=59.23 E-value=12 Score=32.17 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=45.1
Q ss_pred CCcEEEEEec----chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChH
Q 004923 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFG 653 (723)
Q Consensus 586 G~dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g 653 (723)
..+|+|.+.| +....|..|.+.|++.|+..+.+|+..- |--.+.+.+... .+-.+|+++....||+.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~ifi~g~~igG~d 85 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKTFSNWPTYPQLYVRGDLVGGLD 85 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSC-HHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCEEEcCHH
Confidence 3468899888 5667899999999999999999998741 211123333322 22346667655578875
No 98
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=58.60 E-value=19 Score=42.02 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcC---------------CeeEEeehhH--HHH-HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-
Q 004923 453 AVTFAAGLACEG---------------LKPFCAIYSS--FMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC- 512 (723)
Q Consensus 453 ~v~~AaGlA~~G---------------~~p~~~t~s~--Fl~-ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~- 512 (723)
.+++|.|+|++- -+.++++..+ |.. ..++. ++.++..++| ++++++..++ +-+|+++.
T Consensus 160 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Ea-l~~A~~~~L~~livI~dnN~~-~i~~~~~~~ 237 (711)
T 3uk1_A 160 GLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEA-CSLAGTLKLNKLIALYDDNGI-SIDGDVVNW 237 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGT
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHH-HHHHHHhCCCcEEEEEECCCc-ccccchhhh
Confidence 356666766642 2455555544 332 34444 4678889998 7777766553 23333332
Q ss_pred chhhH-hhhhcCCCcEEEcc---CCHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 513 GSFDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 513 ~~~d~-a~~~~iP~l~V~~P---sd~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
...|+ ..++.+ ||.++.| .|..++..+++.|.+ .++|++|...
T Consensus 238 ~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 238 FHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp CCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHTT-CSSCEEEEEE
T ss_pred cCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 12233 344554 8887765 489999999999855 6889888653
No 99
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=58.46 E-value=27 Score=40.47 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=53.3
Q ss_pred eeEEeehhHH-HH--HHHHHHHHHhhcCCC-CEEEEeeCCCCCCCCCCCCC-chhhH-hhhhcCCCcEEEccC----CHH
Q 004923 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS----DEA 535 (723)
Q Consensus 466 ~p~~~t~s~F-l~--ra~dqi~~~~a~~~l-pv~~v~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~Ps----d~~ 535 (723)
+.++++..+. ++ ..++. ++.++..++ |++++++..++ +-+|++.. ...|+ ..++.+ ||.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Ea-l~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEA-CSLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHH-HHHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3455554443 23 34554 467788898 57777766553 22233221 12333 345554 88887343 788
Q ss_pred HHHHHHHHHHHhCCCCEEEEec
Q 004923 536 ELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 536 E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
++..+++.|.+..++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999986646889887653
No 100
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=56.63 E-value=34 Score=39.22 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcC------------CeeEEeehhHH-HH--HHHHHHHHHhhcCCCC-EEEEeeCCCCCCCCCCCCC-chh
Q 004923 453 AVTFAAGLACEG------------LKPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSF 515 (723)
Q Consensus 453 ~v~~AaGlA~~G------------~~p~~~t~s~F-l~--ra~dqi~~~~a~~~lp-v~~v~~~~G~~G~dG~tH~-~~~ 515 (723)
.++.|.|+|++- -+.++++..+. ++ .+++. ++.++..++| ++++++..++ +-+|++.. ..+
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Ea-l~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEA-CSLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHH-HHHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 356666766642 24455554443 22 34454 4677888997 6677666553 22333321 112
Q ss_pred hH-hhhhcCCCcEEEccC---CHHHHHHHHHHHHHhCCCCEEEEec
Q 004923 516 DV-TFMACLPNMVVMAPS---DEAELFHMVATAAAIDDRPSCFRYP 557 (723)
Q Consensus 516 d~-a~~~~iP~l~V~~Ps---d~~E~~~~l~~A~~~~~~P~~ir~~ 557 (723)
|+ ..++.+ ||.++ +. |..++..+++.|.+ .++|++|...
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v~ 239 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIAK 239 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 32 345554 88887 44 78999999999865 7899888643
No 101
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=54.36 E-value=41 Score=34.92 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEE
Q 004923 325 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 361 (723)
Q Consensus 325 G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~ 361 (723)
||.++.| .|..+....++.+.+ .++|++|-..
T Consensus 141 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p 172 (324)
T 1w85_B 141 GLKVVIP---STPYDAKGLLISAIR--DNDPVIFLEH 172 (324)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEE
T ss_pred CCEEEee---CCHHHHHHHHHHHHH--cCCCEEEEec
Confidence 7777777 677777777777765 4789988644
No 102
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=54.24 E-value=56 Score=37.30 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 193 ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
+++|.|+|++ |....+++.++++.. .++|.+.+++..++|+++++..-+
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g 416 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCG 416 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBS
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCC
Confidence 5666777764 433566778999974 689999998888899998876555
No 103
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=53.63 E-value=28 Score=28.20 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCcccc-ccHH---HHHHHhc-C-----CCEEEEEcCC-CCCChHH
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKP-LDHA---LIRSLAK-S-----HEVLITVEEG-SIGGFGS 654 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP-~d~~---~i~~~~~-~-----~~~vvvvEe~-~~gG~g~ 654 (723)
....|..|.+.|++.|+..+.+|+..... -+.+ .+.+... . +-..|+++++ ..||+..
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~ 81 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHH
Confidence 45689999999999999999999974321 1333 3333332 2 3356777444 4788764
No 104
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=52.59 E-value=41 Score=38.52 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=23.2
Q ss_pred CcEEE---ccCCHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 525 NMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 525 ~l~V~---~Psd~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
|+..+ ...|..++..+++.|.+ .++|++|..
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI~v 285 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVD-LDGPTILHI 285 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 45544 44589999999999965 578988754
No 105
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=51.09 E-value=12 Score=33.98 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=61.9
Q ss_pred cEEEEEecchHH-HHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHcCCC
Q 004923 588 RVALLGYGTAVQ-SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 666 (723)
Q Consensus 588 dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~~g~~ 666 (723)
++.+-+.|+..+ .--.|++.|++.||++.- ..-++++.+.+ .....||+++++. ..++.. .
T Consensus 31 ~~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~---~~sr~l~~~~~----~~~D~Ii~m~~~~---------~~~~p~--~ 92 (139)
T 1jl3_A 31 EWKVYSAGIEAHGLNPNAVKAMKEVGIDISN---QTSDIIDSDIL----NNADLVVTLCGDA---------ADKCPM--T 92 (139)
T ss_dssp TEEEEEEESSCCCCCHHHHHHHHHTTCCCTT---CCCCBCCHHHH----TTCSEEEECSHHH---------HHHCCC--C
T ss_pred CEEEEcCcCCCCCCCHHHHHHHHHcCCCccc---CccCcCCHHHh----hcCCEEEEeCchH---------HhhCCC--C
Confidence 355555555432 112356667788887532 23455665543 4568999997642 111111 1
Q ss_pred CCCcceEEeecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 004923 667 DGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 712 (723)
Q Consensus 667 ~~~~~~~~~~~~d~~~~~g~~~el~~~~gl~~e~I~~~i~~ll~~~ 712 (723)
...+......++|.|...|..+|.++.|.-.-+.|.+++..++.+.
T Consensus 93 ~~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~ 138 (139)
T 1jl3_A 93 PPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETG 138 (139)
T ss_dssp CTTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223334557888886557777777777666777888887777643
No 106
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=50.14 E-value=53 Score=34.43 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEE-EcCCcccccchHHHHHHhhh---------cCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNNAGY---------LDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~v-iGDGa~~~G~~~EAln~A~~---------~~~nli~Il~dN~ 248 (723)
.+++|.|+|++ | -+.++++ .+|.. + .+++.+.+.+. .++|+++++.. +
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G 131 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G 131 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c
Confidence 36677777764 3 3445544 88887 3 68888876542 67999999984 6
No 107
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=48.85 E-value=44 Score=35.53 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEE-EcCCcccccchHHHHHH-hhhc--------CCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNN-AGYL--------DSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~v-iGDGa~~~G~~~EAln~-A~~~--------~~nli~Il~dN~ 248 (723)
.+++|.|+|++ | -+.++++ ++|.. + .+++.+.+ ++.+ ++|+++++..-+
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl-~--~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFI-W--LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHH-H--HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 36677777764 3 2445555 88976 3 68888855 5543 899999997554
No 108
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=46.24 E-value=31 Score=30.33 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCcEEEEEecc----hHHHHHHHHHHHHhCCCc---eEEeecCccccccHHH---HHHHh-cCCCEEEEEcCCCCCChHH
Q 004923 586 GERVALLGYGT----AVQSCLAASALLESNGLR---LTVADARFCKPLDHAL---IRSLA-KSHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 586 G~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi~---v~VId~~~ikP~d~~~---i~~~~-~~~~~vvvvEe~~~gG~g~ 654 (723)
..+|+|++.++ ....|..|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+-..|+|.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 34688999884 678899999999999998 88888753 3332 22222 2334677787666899864
No 109
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=42.42 E-value=23 Score=29.23 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=41.4
Q ss_pred cEEEEEecchHHHH------HHHHHHHHhCCCceEEeecCccccccHHHHHHHhc---CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYGTAVQSC------LAASALLESNGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~Gs~v~~a------l~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~---~~~~vvvvEe~~~gG~g~ 654 (723)
+|+|.++- ....| ..|.+.|++.||..+.+|+..- |-..+.+.+... .+-+.|+++....||+..
T Consensus 3 ~v~ly~~~-~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~ 76 (93)
T 1t1v_A 3 GLRVYSTS-VTGSREIKSQQSEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL 76 (93)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred CEEEEEcC-CCCCchhhHHHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHH
Confidence 45665543 23344 7888899999999999999742 222233444433 133677788766888764
No 110
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=41.89 E-value=1.2e+02 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEE-EcCCcccccchHHHHHH-hhh--------cCCCEEEEEE
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNN-AGY--------LDSDMIVILN 245 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~v-iGDGa~~~G~~~EAln~-A~~--------~~~nli~Il~ 245 (723)
.+++|.|+|++ | -+.++++ .++.. + .++|.+.+ ++. .+.|+++++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 36677777765 3 2444444 88885 3 68898854 443 5799999987
No 111
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=41.32 E-value=72 Score=33.37 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.5
Q ss_pred hhcc-CCeEEEecCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 004923 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (723)
Q Consensus 321 fea~-G~~~~~~vDGhd~~~l~~al~~a~~~~~~~P~~I~v~T 362 (723)
++.. ||.++.| .|..+....++.+.+ .++|++|-...
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~ 191 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPK 191 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEG
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecc
Confidence 3444 7887777 677787778887766 37899986553
No 112
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=39.80 E-value=75 Score=31.12 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
.+.++++.|++.|.+++++|+.. .+|.+...+.++....||+.=--+-+++...+..++
T Consensus 48 L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~i 106 (218)
T 3rpe_A 48 LTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHH
Confidence 44556777888899999999974 678777777777777777665444566655555444
No 113
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=39.48 E-value=53 Score=27.59 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=42.6
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh-c-CCCEEEEEcCCCCCChHHH
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-K-SHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~-~-~~~~vvvvEe~~~gG~g~~ 655 (723)
.+|+|.+. +....|..|.+.|++.|+..+.+|+..-.+. .+.+.+.. . .+-..|+++.-..||+...
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 36776664 4457899999999999999999998752211 12233332 2 2235666765557887643
No 114
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=39.31 E-value=49 Score=31.33 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=39.3
Q ss_pred hHHHHHHHHHH-HHhCCCceEEeecCcccc----------ccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Q 004923 597 AVQSCLAASAL-LESNGLRLTVADARFCKP----------LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (723)
Q Consensus 597 ~v~~al~Aa~~-L~~~Gi~v~VId~~~ikP----------~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~ 661 (723)
.-..+..+++. |++.|.+++++|+..+.. =+.+.+.+.+.....+|+.=--+.+++...+..++.
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 33455566777 888899999999875421 123334444555565655544345666666666653
No 115
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=39.25 E-value=81 Score=27.77 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=42.4
Q ss_pred CcEEEEEecc----hHHHHHHHHHHHHhCCC-ceEEeecCccccccHHHHHHHh----c-CCCEEEEEcCCCCCChHH
Q 004923 587 ERVALLGYGT----AVQSCLAASALLESNGL-RLTVADARFCKPLDHALIRSLA----K-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 587 ~dv~Iva~Gs----~v~~al~Aa~~L~~~Gi-~v~VId~~~ikP~d~~~i~~~~----~-~~~~vvvvEe~~~gG~g~ 654 (723)
.+|+|+.-|+ ....|..|.+.|.+.|+ ....+|+.. |. .+++.+ . .+=+-|.|..-..||...
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~----~~-~~r~~l~~~sg~~TvPqIFI~g~~IGG~Dd 92 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DP-ELRQGIKDYSNWPTIPQVYLNGEFVGGCDI 92 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTS----CH-HHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccC----CH-HHHHHHHHhccCCCCCeEeECCEEECCHHH
Confidence 4688888885 56789999999999998 578888752 22 333332 1 233456677656788753
No 116
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=39.07 E-value=57 Score=32.54 Aligned_cols=64 Identities=20% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCceEEeecCcccccc--------HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHH
Q 004923 599 QSCLAASALLESNGLRLTVADARFCKPLD--------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 599 ~~al~Aa~~L~~~Gi~v~VId~~~ikP~d--------~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
..+..+++.+++.|+.++++|+..+..++ .+.+.+.+.....+|++=--+.+++...+..++-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 35555677788889999999998753211 33444555566666655544557777777666643
No 117
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=38.05 E-value=2.1e+02 Score=25.31 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=65.3
Q ss_pred cEEEEEecc-hHHHHHHHHHHHHhCCCceEEeecCccccccH--HHHHHHhc----CCCEEEEEcCCCCCChHHHHHHHH
Q 004923 588 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDH--ALIRSLAK----SHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 588 dv~Iva~Gs-~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~--~~i~~~~~----~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
.++|++.|. ......++++.+-.+ -.+..+|++-=...+. +.+++.++ ..+.+|.+|-++...++..+....
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~ 84 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEEL 84 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhc
Confidence 488999999 788888999987655 5777888763222111 23344443 246889999866555554433211
Q ss_pred HHcCCCCCCcceEEeecCCccccCCCHHHHH--HHcCCCHHHHHHHHHHHHhc
Q 004923 661 AQDGLLDGTVKWRPLVLPDRYIDHGSPADQL--AQAGLTPSHIAATVFNILGQ 711 (723)
Q Consensus 661 ~~~g~~~~~~~~~~~~~~d~~~~~g~~~el~--~~~gl~~e~I~~~i~~ll~~ 711 (723)
..+++.+...+.+.- -|.. ...+-+-++|++.++++.+.
T Consensus 85 --------~~~v~vI~gvnlpml----lea~~~~~~~~~l~el~~~~~~~~~~ 125 (130)
T 3gx1_A 85 --------GIRTKTVTMVSTPVV----LEAMRKASLGRGLEDIYQSCEQLFEN 125 (130)
T ss_dssp --------CCCEEEECSCCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEeCCCHHHH----HHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 124455544443321 1222 23445888898888877654
No 118
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.22 E-value=28 Score=31.01 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCceEEeecCccccccHHHHHHHh---------cCCCEEEEEcCCCCCChHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLA---------KSHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~---------~~~~~vvvvEe~~~gG~g~~ 655 (723)
.|..|...|+..||..+.+|+.. .|--.+.+.+.. ..+-..|++++-..||+-..
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 46888889999999999999974 222222333332 12346788888778998743
No 119
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=35.00 E-value=50 Score=27.73 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred cEEEEEec----chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~G----s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
.|+|.+.| +....|..|.+.|++.|+....+|+..- |--.+.+.+... .+-..|+++....||+..
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~ 88 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGELVGGLDI 88 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeChHH
Confidence 57777776 4557899999999999999999998642 211122333332 222455666445788864
No 120
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=33.91 E-value=45 Score=30.08 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=38.2
Q ss_pred cCceEEeeeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCcccc-ccHHHHHHH
Q 004923 577 VGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP-LDHALIRSL 634 (723)
Q Consensus 577 ~gk~~vl~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP-~d~~~i~~~ 634 (723)
+|++..+.+.+++++||-|+.+...+..++.|.+.|.++.++-.|+-.- +-.+.++++
T Consensus 9 ~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l 67 (142)
T 3lyu_A 9 LGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKA 67 (142)
T ss_dssp CSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTT
T ss_pred CCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHH
Confidence 3443333335689999999999999988888888888888884444322 123445443
No 121
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=33.78 E-value=71 Score=31.31 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhC-CCceEEeecCcccc---------------------ccHHHHHHHhcCCCEEEEEcCCCCCChHHH
Q 004923 598 VQSCLAASALLESN-GLRLTVADARFCKP---------------------LDHALIRSLAKSHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 598 v~~al~Aa~~L~~~-Gi~v~VId~~~ikP---------------------~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~ 655 (723)
...+..+++.|++. |.+++++|+..+.+ -|.+.+.+.+...+.||+.=--+.+++...
T Consensus 18 ~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~ 97 (242)
T 1sqs_A 18 LEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVD 97 (242)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHH
Confidence 34555667778777 99999999875421 123344444556676666554456777777
Q ss_pred HHHHHHH
Q 004923 656 VVQFLAQ 662 (723)
Q Consensus 656 v~~~l~~ 662 (723)
+..++-.
T Consensus 98 lK~~iDr 104 (242)
T 1sqs_A 98 TKNFIER 104 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 122
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.42 E-value=38 Score=29.11 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=40.3
Q ss_pred cEEEEEecchHHHHH------HHHHHHHhCCCceEEeecCccccccHHHHHHHh--------c-CCCEEEEEcCCCCCCh
Q 004923 588 RVALLGYGTAVQSCL------AASALLESNGLRLTVADARFCKPLDHALIRSLA--------K-SHEVLITVEEGSIGGF 652 (723)
Q Consensus 588 dv~Iva~Gs~v~~al------~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~--------~-~~~~vvvvEe~~~gG~ 652 (723)
.|+|.+.- ....|. +|.+.|++.||..+.+|+.. .|-..+.+.+.. . .+-..|++++...||+
T Consensus 9 ~V~vy~~~-~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~-~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~ 86 (111)
T 2ct6_A 9 VIRVFIAS-SSGFVAIKKKQQDVVRFLEANKIEFEEVDITM-SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDY 86 (111)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT-CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEH
T ss_pred EEEEEEcC-CCCCcccchhHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCH
Confidence 46666543 334555 78889999999999999975 221122333332 1 1235777887667887
Q ss_pred HH
Q 004923 653 GS 654 (723)
Q Consensus 653 g~ 654 (723)
..
T Consensus 87 d~ 88 (111)
T 2ct6_A 87 DS 88 (111)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 123
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=30.15 E-value=1.1e+02 Score=29.09 Aligned_cols=61 Identities=3% Similarity=0.060 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCceEEeecCccccccH----------HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKPLDH----------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP~d~----------~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
...+++..+.++|++++++|+.-+-.|+. +.+++.++....+|++=--+.|++...+.+++
T Consensus 20 ~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~i 90 (190)
T 3u7r_A 20 KLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHH
Confidence 33344445556789999999876532332 23455566666666554434455544444433
No 124
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=29.95 E-value=94 Score=29.73 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~ 661 (723)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.+...+.||+.=--+-+++...+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44456667777799999999984 5677777777777777776654455777766666654
No 125
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=29.18 E-value=19 Score=32.17 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=30.1
Q ss_pred eeeCCcEEEEEecchHH--HHHHHHHHHHhCCCceEEeecC
Q 004923 583 LIEGERVALLGYGTAVQ--SCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 583 l~eG~dv~Iva~Gs~v~--~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
+.++.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 44567999999998654 3455667899999999998753
No 126
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.95 E-value=38 Score=31.90 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=24.4
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
.||+||+.|..- +.||-.|.+.|++|.|++-.
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEECC
Confidence 379999988653 33556688899999999853
No 127
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.55 E-value=78 Score=32.30 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCceEEeecCccccc-------c--HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Q 004923 599 QSCLAASALLESNGLRLTVADARFCKPL-------D--HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (723)
Q Consensus 599 ~~al~Aa~~L~~~Gi~v~VId~~~ikP~-------d--~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~ 661 (723)
..+..+++.+++.|+.++++|+.-+..+ + .+.+.+.+.....+|++=--+.+++...+..++-
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHH
Confidence 4555677788888999999999875321 1 2334445555565555443334666656655554
No 128
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=27.70 E-value=2.2e+02 Score=33.94 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEe
Q 004923 533 DEAELFHMVATAAAIDDRPSCFRY 556 (723)
Q Consensus 533 d~~E~~~~l~~A~~~~~~P~~ir~ 556 (723)
|..++..+++.|.+..++|++|..
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~~ 388 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVILA 388 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEE
Confidence 788888889888765568988865
No 129
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=27.69 E-value=1.9e+02 Score=31.48 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=66.9
Q ss_pred CCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccH---HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHH
Q 004923 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH---ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 586 G~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~---~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
+-|++++++|+....+.-+.+.| +.|..|=..+ ++++. +.+.+.+++.+.++.+-.+-..+.-.++.++...
T Consensus 107 dIDaVviaTp~p~~H~e~a~~AL-~AGKHVv~~n----k~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eLv~~a~~ 181 (446)
T 3upl_A 107 LIDVIIDATGIPEVGAETGIAAI-RNGKHLVMMN----VEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIEFVSA 181 (446)
T ss_dssp TCCEEEECSCCHHHHHHHHHHHH-HTTCEEEECC----HHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCChHHHHHHHHHHH-HcCCcEEecC----cccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHHHHHHHHh
Confidence 45999999987422222222223 3576653333 35553 4566677777777777665434445555666655
Q ss_pred cCCCCCCcceEEeecCCccccCCCHHHH---HHHcCCCHHHHHHHHHHHHhcchhHHh
Q 004923 663 DGLLDGTVKWRPLVLPDRYIDHGSPADQ---LAQAGLTPSHIAATVFNILGQTREALE 717 (723)
Q Consensus 663 ~g~~~~~~~~~~~~~~d~~~~~g~~~el---~~~~gl~~e~I~~~i~~ll~~~~~~~~ 717 (723)
-|+- +-..-.|..+.+....+++.+ -+..|+++.- +.++++..|.+.+
T Consensus 182 ~G~~---~v~~Gkg~~~~~~~~~t~~~~~~~a~~~~~~~~m----~~sf~dgtk~~~E 232 (446)
T 3upl_A 182 LGYE---VVSAGKGKNNPLNFDATPDDYRQEADRRNMNVRL----LVEFIDGSKTMVE 232 (446)
T ss_dssp TTCE---EEEEEEEESSCCCTTCCHHHHHHHHHHTTCCHHH----HHHHHTSHHHHHH
T ss_pred CCCe---EEEeccCcCCcccCCCChhHHHHHHHHCCCChHH----hhhhccccHHHHH
Confidence 5541 222233445556666677666 5668888753 3445555555443
No 130
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.51 E-value=1e+02 Score=28.65 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhC------CCceEEeecCc--cccccH--------------------HHHHHHhcCCCEEEEEcCCC
Q 004923 597 AVQSCLAASALLESN------GLRLTVADARF--CKPLDH--------------------ALIRSLAKSHEVLITVEEGS 648 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~------Gi~v~VId~~~--ikP~d~--------------------~~i~~~~~~~~~vvvvEe~~ 648 (723)
.-..+...++.|++. |.+++++|+.. +.|++. +.+.+.+.....+|++=--+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y 95 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQY 95 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceE
Confidence 334555566777765 78999999874 322211 23444455666666555444
Q ss_pred CCChHHHHHHHHHH
Q 004923 649 IGGFGSHVVQFLAQ 662 (723)
Q Consensus 649 ~gG~g~~v~~~l~~ 662 (723)
.+++...+..++-.
T Consensus 96 ~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 96 NWGYPAALKNAIDR 109 (191)
T ss_dssp TTBCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 56777777666643
No 131
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.41 E-value=74 Score=29.73 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecCccccccHH-------------HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHH
Q 004923 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHA-------------LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 597 ~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~-------------~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
.-..|..+++.|++.|++++++++... +.+.- ...+.+...+.+|+.=--+.+++...+..++..
T Consensus 19 T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~ 96 (200)
T 2a5l_A 19 TAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDG 96 (200)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHH
Confidence 344566667778878999999999864 21110 112334455666655444457777777666643
No 132
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=27.14 E-value=1.1e+02 Score=25.84 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH---HHHHhc-CCCEEEEEcCCCCCChHHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL---IRSLAK-SHEVLITVEEGSIGGFGSH 655 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~---i~~~~~-~~~~vvvvEe~~~gG~g~~ 655 (723)
.|+|++. +....|..|.+.|++.|+..+++|+....|-+.+. +.+... .+-+.|++.....||+...
T Consensus 20 ~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 20 TVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDT 90 (113)
T ss_dssp SEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHH
Confidence 4666654 55688999999999999999999987653322222 222211 2234566765557887643
No 133
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=27.06 E-value=1.6e+02 Score=28.43 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCcEEEEEecchH----HHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEE
Q 004923 586 GERVALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 643 (723)
Q Consensus 586 G~dv~Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvv 643 (723)
|+.|++|.|++.. .....+.+.|++-|+++.++++..- +.+.+.+.+++.+.+++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~---~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE---SLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS---CHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC---ChHHHHHHHHhCCEEEE
Confidence 6789999998863 2445566677778999999987752 33344444555565553
No 134
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=26.66 E-value=1.1e+02 Score=32.31 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=47.8
Q ss_pred eeCCcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCcc-------------ccccHHHHHHHhcCCCEEEEEcCCCCC
Q 004923 584 IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFC-------------KPLDHALIRSLAKSHEVLITVEEGSIG 650 (723)
Q Consensus 584 ~eG~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~i-------------kP~d~~~i~~~~~~~~~vvvvEe~~~g 650 (723)
..|+.|.|++.|.. +...++.+++.|+++-++|..-- ...|.+.+.++++... +|+.|-..
T Consensus 12 ~~~k~IlIlG~G~~---g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~-- 85 (389)
T 3q2o_A 12 LPGKTIGIIGGGQL---GRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFEN-- 85 (389)
T ss_dssp CTTSEEEEECCSHH---HHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCC--
T ss_pred CCCCEEEEECCCHH---HHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeecccc--
Confidence 35678999998875 44455556678999999986421 2345667888887765 45666432
Q ss_pred ChHHHHHHHHHHcCC
Q 004923 651 GFGSHVVQFLAQDGL 665 (723)
Q Consensus 651 G~g~~v~~~l~~~g~ 665 (723)
+...+++.+.+.+.
T Consensus 86 -~~~~~~~~l~~~g~ 99 (389)
T 3q2o_A 86 -IDYRCLQWLEKHAY 99 (389)
T ss_dssp -CCHHHHHHHHHHSC
T ss_pred -ccHHHHHHHHhhCc
Confidence 23344556665554
No 135
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=26.64 E-value=1.8e+02 Score=26.10 Aligned_cols=59 Identities=8% Similarity=0.030 Sum_probs=41.4
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcC
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe 646 (723)
++.|+..+.. ...|.+..+.|++.|+.+++.+.++=.++-...-....++...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 6777777754 5799999999999999999866543234443333334567788888764
No 136
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.15 E-value=1.1e+02 Score=27.90 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=30.4
Q ss_pred EEEecchH----HHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEc
Q 004923 591 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 645 (723)
Q Consensus 591 Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvE 645 (723)
+|.|+|+. ..|...++.|++.|++++++|+... +.+.+.+.+.+.+.+|+.=
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gs 59 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGT 59 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEc
Confidence 44566654 4555566677778999999998743 2333333333445555543
No 137
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=25.77 E-value=1.7e+02 Score=31.40 Aligned_cols=71 Identities=14% Similarity=-0.053 Sum_probs=45.2
Q ss_pred EEEEecchH----HHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHH
Q 004923 590 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 590 ~Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
++|.|+||. ..|...++.|+++|+.+.++++..+..-|...+.+.+.+.+.+|+-=--..+++-..+..++
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 345677764 35566677788899999888887776667666655555666666544333455544444443
No 138
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.74 E-value=91 Score=27.26 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCC
Q 004923 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGG 651 (723)
Q Consensus 595 Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG 651 (723)
|+.-..|...++.|++.|++++++|+....+ + -+.+.+.+|+.=--+.+|
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~pty~~g 59 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGCSAMTDE 59 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEECCBTTT
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEcCccCCC
Confidence 3344455556667777899999999875433 1 234556666554333344
No 139
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.71 E-value=1.4e+02 Score=25.73 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=37.5
Q ss_pred EEEecchH----HHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCCCCChHHH--HHHHHHH
Q 004923 591 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSH--VVQFLAQ 662 (723)
Q Consensus 591 Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~--v~~~l~~ 662 (723)
+|.|+|.. ..|...++.|++.|++++++++.... .+. +.+.+.+|+.=--+.+|.... +..++..
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~---~~~----l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN---VDD----VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC---HHH----HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC---HHH----HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 45566654 34455566677779999999987542 222 335566666644344555443 5555543
No 140
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=25.57 E-value=81 Score=33.72 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 004923 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (723)
Q Consensus 192 ~ls~AlG~A~A~~~~g~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~dN~ 248 (723)
++++|+|+|++ | .+.+++.-|.|-.. .+|.+.+++....|+++++-+-.
T Consensus 76 a~~~a~Gaa~a----G-~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 76 SIAAAIGASWA----G-AKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp HHHHHHHHHHT----T-CCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--
T ss_pred HHHHHHHHHHh----C-CcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCC
Confidence 35555565554 3 34666777888765 56777777777799998886554
No 141
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=24.97 E-value=1.4e+02 Score=35.90 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=59.9
Q ss_pred eeccccHHHHHHHHHHHHhc----C-----C--eeEEee-hhHH-HH-HHHHHHHHHhhcCCCC---EEEEeeCCCCCCC
Q 004923 444 FDVGIAEQHAVTFAAGLACE----G-----L--KPFCAI-YSSF-MQ-RAYDQVVHDVDLQKLP---VRFAMDRAGLVGA 506 (723)
Q Consensus 444 id~GIaE~~~v~~AaGlA~~----G-----~--~p~~~t-~s~F-l~-ra~dqi~~~~a~~~lp---v~~v~~~~G~~G~ 506 (723)
++.+..++. +.+|.|+|++ | . .+++.+ =+.| .+ ..+|. +|.++..++| +++++..-++ |-
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ea-ln~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQET-LNMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHH-HHHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHH-HHHhhccCCCCCceEEEEEeCCc-cc
Confidence 444555543 6777788776 2 1 233333 2334 22 34443 5788999999 7777754442 22
Q ss_pred CC-CCC-----CchhhHhhhhcCCCcEEEccCCHHHHHHHHHHHHH---hCCCCEEEEe
Q 004923 507 DG-PTH-----CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (723)
Q Consensus 507 dG-~tH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~A~~---~~~~P~~ir~ 556 (723)
.+ ++. ....+++-.-.+|.+.| .-.|+.++..+++.|.+ ...+|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 222 12334333334565544 67789999999988874 3468987743
No 142
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=24.23 E-value=85 Score=29.66 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHhhhcC-CCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEEC
Q 004923 191 TSISAGLGMAVGRDLKG-RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246 (723)
Q Consensus 191 ~~ls~AlG~A~A~~~~g-~~~~vv~viGDGa~~~G~~~EAln~A~~~~~nli~Il~d 246 (723)
+.+..|+-.|+..-... ...+++.++.||.-+.+...+++..+...+.++.+|-.-
T Consensus 92 T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 92 TAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp CCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEES
T ss_pred CcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEec
Confidence 45666666555322111 356899999999999886667777666655555555443
No 143
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=23.94 E-value=1.9e+02 Score=22.17 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred EEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHH
Q 004923 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQFL 660 (723)
Q Consensus 589 v~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~~v~~~l 660 (723)
+++.+. +....|..+...|++.|+....+|+..- |-..+.+.+... ..-.+++++....+|+. .+.+++
T Consensus 3 i~~y~~-~~C~~C~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~-~i~~~~ 72 (82)
T 1fov_A 3 VEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDGN-AAKREEMIKRSGRTTVPQIFIDAQHIGGYD-DLYALD 72 (82)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTTC-SHHHHHHHHHHSSCCSCEEEETTEEEESHH-HHHHHH
T ss_pred EEEEEC-CCChhHHHHHHHHHHCCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEeCHH-HHHHHH
Confidence 445432 3457788888889888999999998741 111122333322 22244555543467764 444544
No 144
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=23.79 E-value=2.2e+02 Score=24.08 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=42.2
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHH----HHHHh-cCCCEEEEEcCCCCCChHH
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL----IRSLA-KSHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~----i~~~~-~~~~~vvvvEe~~~gG~g~ 654 (723)
..|+|.+. +....|..|.+.|++.|+..+++|+.... +... +.+.. ..+-+.|++.....||+..
T Consensus 17 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~ 86 (114)
T 3h8q_A 17 SRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQ 86 (114)
T ss_dssp CSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHH
Confidence 45777654 55678999999999999999999986431 2222 32222 2233566676545798764
No 145
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=22.11 E-value=2e+02 Score=27.09 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=24.8
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCC--ceEEeecC
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGL--RLTVADAR 621 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi--~v~VId~~ 621 (723)
.|.||.-|.. ...+.+|++.|++-|+ +++|++..
T Consensus 9 ~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH 45 (174)
T 3lp6_A 9 RVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAH 45 (174)
T ss_dssp SEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 5777665543 6789999999998887 45666655
No 146
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=22.02 E-value=1.9e+02 Score=22.93 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=38.1
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
.+++.+. +....|..+...|++.|+..+.+|+..- |-..+.+.+... ..-.+++++....+|+..
T Consensus 7 ~v~ly~~-~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~ 72 (92)
T 2khp_A 7 DVIIYTR-PGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFPQIFIGSVHVGGCDD 72 (92)
T ss_dssp CEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCCEEEETTEEEESHHH
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEcCHHH
Confidence 3555442 4457888999999999999999998732 211223333322 222355555434677653
No 147
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=21.69 E-value=1.3e+02 Score=24.09 Aligned_cols=66 Identities=12% Similarity=0.235 Sum_probs=40.3
Q ss_pred cEEEEEecchHHHHHHHHHHHHhCCCceEEeecCccccccH----HHHHHHhc-CCCEEEEEcCCCCCChHH
Q 004923 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH----ALIRSLAK-SHEVLITVEEGSIGGFGS 654 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~----~~i~~~~~-~~~~vvvvEe~~~gG~g~ 654 (723)
.++|.+. +....|..|...|++.|+..+.+|+....+-+. +.+.+... ..-.+++++....+|+..
T Consensus 13 ~v~ly~~-~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~~ 83 (92)
T 3ic4_A 13 EVLMYGL-STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNE 83 (92)
T ss_dssp SSEEEEC-TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCCH
T ss_pred eEEEEEC-CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCCH
Confidence 4565543 446788889999998999999999876544222 22222222 233555565434677753
No 148
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=21.39 E-value=36 Score=30.87 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=27.3
Q ss_pred CCcEEEEEecchHH-HHHHHHHHHHhCCCceEEeecC
Q 004923 586 GERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 586 G~dv~Iva~Gs~v~-~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
..|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 36999999998653 2235567788999999998854
No 149
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=21.26 E-value=1.5e+02 Score=25.84 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhc
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 636 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~ 636 (723)
+....|.+|.+.|++.|+..+++|+.. .|.+.+.+.++++
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~ 47 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILS 47 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHh
Confidence 346789999999999999999999864 5778888887775
No 150
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=21.16 E-value=1.3e+02 Score=28.59 Aligned_cols=63 Identities=19% Similarity=0.092 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCceEEeecCcccc---ccHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKP---LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP---~d~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
.+...++.+++.|.+++++|+....| .|.+...+.+..+..||+.=--+-+++.+.+..++-.
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 34444566777799999999987654 4555566666677777766544567777777777654
No 151
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=21.03 E-value=95 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCC
Q 004923 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (723)
Q Consensus 596 s~v~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~ 639 (723)
.....|.+|.+.|++.|+..+++|+.. .|.+.+.+.++++..+
T Consensus 13 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 13 PRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp TTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 345789999999999999999999875 6778888888776543
No 152
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=20.93 E-value=4.6e+02 Score=24.27 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=40.2
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCCc--eEEeecCccccccHH---HHHHHhcC-CCEEEEEcCCCCCChHHHHHHH
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGLR--LTVADARFCKPLDHA---LIRSLAKS-HEVLITVEEGSIGGFGSHVVQF 659 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~--v~VId~~~ikP~d~~---~i~~~~~~-~~~vvvvEe~~~gG~g~~v~~~ 659 (723)
.|.||.-|+. ...+.+|++.|++-|+. ++|++..- .+.+ .+++..++ .-.||++=.+..+.+..-|+..
T Consensus 4 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR---~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~ 79 (159)
T 3rg8_A 4 LVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHK---TAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGF 79 (159)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTT---CHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccC---CHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhc
Confidence 4666654433 67899999999998975 55555543 2222 22222222 2355555556667777666543
No 153
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=20.91 E-value=2.9e+02 Score=25.27 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=38.2
Q ss_pred cEEEEEecchHH----HHHHHHHHHHhCC-CceEEeecCccccccHHHHHHHhc-CCCEEEEEcCC
Q 004923 588 RVALLGYGTAVQ----SCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEG 647 (723)
Q Consensus 588 dv~Iva~Gs~v~----~al~Aa~~L~~~G-i~v~VId~~~ikP~d~~~i~~~~~-~~~~vvvvEe~ 647 (723)
+++|+++|+... .-..+++.|++.. -+++++|.-+.-+ +.+..+.. +.+.+|+|+.-
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~---~l~~~l~~~~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE---NDIVAIRELRPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSG---GGHHHHHHHCCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHH---HHHHHHhcCCCCEEEEEEeC
Confidence 478999999753 4567788887653 2588999987644 33333332 45788888863
No 154
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.91 E-value=1.3e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=30.5
Q ss_pred EEEEecchH----HHHHHHHHHHHhCCCceEEeecCccccccHHHHHHHhcCCCEEEEE
Q 004923 590 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITV 644 (723)
Q Consensus 590 ~Iva~Gs~v----~~al~Aa~~L~~~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvv 644 (723)
++|.|+|+. ..|...++.|++.|++++++|+... .+.+.+.+.+...+.+|+.
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEE
Confidence 345566654 4555566677778999999998743 0233333333344444444
No 155
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.59 E-value=1.9e+02 Score=25.36 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=24.5
Q ss_pred CcEEEEEecchHHHHHHHHHHHHhCCCceEEeecC
Q 004923 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (723)
Q Consensus 587 ~dv~Iva~Gs~v~~al~Aa~~L~~~Gi~v~VId~~ 621 (723)
..++|+++|.+-.. .++.|.+.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 36899999987653 456677789999999864
No 156
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=20.39 E-value=1e+02 Score=30.23 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=45.9
Q ss_pred cEEEEEecchHHHHHHHHHHHHh---CCCceEEeecCccccccHHHHHHHhcCCCEEEEEcCCC-CCCh---HHHHHHHH
Q 004923 588 RVALLGYGTAVQSCLAASALLES---NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGF---GSHVVQFL 660 (723)
Q Consensus 588 dv~Iva~Gs~v~~al~Aa~~L~~---~Gi~v~VId~~~ikP~d~~~i~~~~~~~~~vvvvEe~~-~gG~---g~~v~~~l 660 (723)
.-++|.|||+...+.+.|+.|.+ .|+.+.|+++....+ +. +...+.+|++=.-+ .|-+ ...+.++|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~---~~----l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L 113 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRL---SC----LEEERLLLVVTSTFGNGDCPGNGEKLKKSL 113 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCG---GG----GGTCSEEEEEEECBTTTBCCGGGHHHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCH---hH----hccCCeEEEEEeccCCCcCCHHHHHHHHHH
Confidence 34567899998888888777654 588899988775432 11 22445555554332 2222 23344555
Q ss_pred HHcCCCCCCcceEEeec
Q 004923 661 AQDGLLDGTVKWRPLVL 677 (723)
Q Consensus 661 ~~~g~~~~~~~~~~~~~ 677 (723)
..........++-.+|+
T Consensus 114 ~~~~~~l~~~~~aVfGl 130 (219)
T 3hr4_A 114 FMLKELNNKFRYAVFGL 130 (219)
T ss_dssp HHCCCCSSCCEEEEEEE
T ss_pred HhcchhhcCCEEEEEeC
Confidence 54321112345556665
No 157
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.37 E-value=2.8e+02 Score=25.90 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=37.3
Q ss_pred cEEEEEecch-HHHHHHHHHHHHhCCCc--eEEeecCccccccHHHHHHHh----cC-CCEEEEEcCCCCCChHHHHHH
Q 004923 588 RVALLGYGTA-VQSCLAASALLESNGLR--LTVADARFCKPLDHALIRSLA----KS-HEVLITVEEGSIGGFGSHVVQ 658 (723)
Q Consensus 588 dv~Iva~Gs~-v~~al~Aa~~L~~~Gi~--v~VId~~~ikP~d~~~i~~~~----~~-~~~vvvvEe~~~gG~g~~v~~ 658 (723)
.|.||.-|.. ...+.+|++.|++-|+. ++|++..- .+.+ +.+.+ ++ .+ ||++=.+..+.+..-|+.
T Consensus 5 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR---~p~~-~~~~~~~a~~~g~~-ViIa~AG~aa~LpgvvA~ 78 (163)
T 3ors_A 5 KVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHR---TPKM-MVQFASEARERGIN-IIIAGAGGAAHLPGMVAS 78 (163)
T ss_dssp CEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHH-HHHHHHHTTTTTCC-EEEEEEESSCCHHHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcC---CHHH-HHHHHHHHHhCCCc-EEEEECCchhhhHHHHHh
Confidence 5666664443 67899999999988875 45555542 2222 22222 22 34 444444445666655544
No 158
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=20.24 E-value=71 Score=29.96 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=32.0
Q ss_pred HHHHHhCCCceEEeecCcccccc-----------HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHH
Q 004923 605 SALLESNGLRLTVADARFCKPLD-----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (723)
Q Consensus 605 a~~L~~~Gi~v~VId~~~ikP~d-----------~~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~~ 662 (723)
++.|+ .|.+++++|+..+..++ .+.+.+.+...+.+|+.=--+.+++...+..++-.
T Consensus 30 ~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 30 IGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 33344 57889999987643222 23334445556666655443456666666665543
No 159
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.09 E-value=2.3e+02 Score=26.54 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCceEEeecCccccccH----------HHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Q 004923 600 SCLAASALLESNGLRLTVADARFCKPLDH----------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (723)
Q Consensus 600 ~al~Aa~~L~~~Gi~v~VId~~~ikP~d~----------~~i~~~~~~~~~vvvvEe~~~gG~g~~v~~~l~ 661 (723)
.+..+++.++ .|..++++|+.-+-.++. +.+.+.+.....+|+.=--+.+++...+..++-
T Consensus 21 la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD 91 (192)
T 3fvw_A 21 LAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLD 91 (192)
T ss_dssp HHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred HHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHH
Confidence 4445555665 689999999986422222 344555667777777665556777666666554
Done!